0s autopkgtest [17:31:43]: starting date and time: 2024-03-16 17:31:43+0000 0s autopkgtest [17:31:43]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:31:43]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.c31vs8zs/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-genomicranges --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-6.secgroup --name adt-noble-arm64-r-bioc-genomicranges-20240316-173143-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 102s autopkgtest [17:33:25]: testbed dpkg architecture: arm64 102s autopkgtest [17:33:25]: testbed apt version: 2.7.12 102s autopkgtest [17:33:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 103s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 103s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 104s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 104s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 104s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 104s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 104s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 104s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 104s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 104s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 104s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 104s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 104s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 106s Fetched 9060 kB in 2s (4390 kB/s) 106s Reading package lists... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Calculating upgrade... 110s The following packages will be REMOVED: 110s libglib2.0-0 libssl3 110s The following NEW packages will be installed: 110s libglib2.0-0t64 libssl3t64 xdg-user-dirs 110s The following packages have been kept back: 110s curl 110s The following packages will be upgraded: 110s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 110s ubuntu-minimal ubuntu-standard 110s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 110s Need to get 4613 kB of archives. 110s After this operation, 211 kB of additional disk space will be used. 110s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 110s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 110s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 110s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 110s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 110s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 110s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 111s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 111s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 111s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 111s Fetched 4613 kB in 1s (5632 kB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 111s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 111s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 111s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 111s udisks2 depends on libglib2.0-0 (>= 2.77.0). 111s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 111s python3-gi depends on libglib2.0-0 (>= 2.77.0). 111s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 111s netplan.io depends on libglib2.0-0 (>= 2.70.0). 111s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 111s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 111s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 111s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 111s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 111s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 111s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 111s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 111s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 111s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 111s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 111s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 111s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 111s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 111s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 111s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 111s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 111s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 111s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 111s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 111s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 111s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 111s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 111s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 111s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 111s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 111s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 111s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 111s fwupd depends on libglib2.0-0 (>= 2.79.0). 111s bolt depends on libglib2.0-0 (>= 2.56.0). 111s 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 111s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 111s Selecting previously unselected package libglib2.0-0t64:arm64. 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 111s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 112s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 112s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 112s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 112s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 112s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 112s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 112s wget depends on libssl3 (>= 3.0.0). 112s u-boot-tools depends on libssl3 (>= 3.0.0). 112s tnftp depends on libssl3 (>= 3.0.0). 112s tcpdump depends on libssl3 (>= 3.0.0). 112s systemd-resolved depends on libssl3 (>= 3.0.0). 112s systemd depends on libssl3 (>= 3.0.0). 112s sudo depends on libssl3 (>= 3.0.0). 112s sbsigntool depends on libssl3 (>= 3.0.0). 112s rsync depends on libssl3 (>= 3.0.0). 112s python3-cryptography depends on libssl3 (>= 3.0.0). 112s openssh-server depends on libssl3 (>= 3.0.10). 112s openssh-client depends on libssl3 (>= 3.0.10). 112s mtd-utils depends on libssl3 (>= 3.0.0). 112s mokutil depends on libssl3 (>= 3.0.0). 112s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 112s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 112s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 112s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 112s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 112s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 112s libnvme1 depends on libssl3 (>= 3.0.0). 112s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 112s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 112s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 112s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 112s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 112s kmod depends on libssl3 (>= 3.0.0). 112s dhcpcd-base depends on libssl3 (>= 3.0.0). 112s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 112s 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 112s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 112s Selecting previously unselected package libssl3t64:arm64. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 112s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 112s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 112s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 112s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 112s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 112s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 112s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 112s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 112s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 112s Unpacking ubuntu-minimal (1.536) over (1.535) ... 112s Selecting previously unselected package xdg-user-dirs. 112s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 112s Unpacking xdg-user-dirs (0.18-1) ... 112s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 112s Unpacking ubuntu-standard (1.536) over (1.535) ... 112s Setting up ubuntu-minimal (1.536) ... 112s Setting up xdg-user-dirs (0.18-1) ... 112s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 112s Setting up libtirpc-common (1.3.4+ds-1.1) ... 112s Setting up ubuntu-standard (1.536) ... 112s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 112s No schema files found: doing nothing. 112s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 112s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 112s Setting up openssl (3.0.13-0ubuntu1) ... 112s Setting up readline-common (8.2-3.1) ... 112s Processing triggers for man-db (2.12.0-3) ... 113s Processing triggers for install-info (7.1-3) ... 113s Processing triggers for libc-bin (2.39-0ubuntu2) ... 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 115s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 115s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 115s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 115s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 116s Reading package lists... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Calculating upgrade... 118s The following packages have been kept back: 118s curl 118s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 122s autopkgtest [17:33:45]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 122s autopkgtest [17:33:45]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicranges 124s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicranges 1.54.1+dfsg-1 (dsc) [2283 B] 124s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicranges 1.54.1+dfsg-1 (tar) [806 kB] 124s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicranges 1.54.1+dfsg-1 (diff) [6040 B] 124s gpgv: Signature made Thu Nov 30 01:40:29 2023 UTC 124s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 124s gpgv: issuer "plessy@debian.org" 124s gpgv: Can't check signature: No public key 124s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicranges_1.54.1+dfsg-1.dsc: no acceptable signature found 124s autopkgtest [17:33:47]: testing package r-bioc-genomicranges version 1.54.1+dfsg-1 125s autopkgtest [17:33:48]: build not needed 126s autopkgtest [17:33:49]: test pkg-r-autopkgtest: preparing testbed 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s Starting pkgProblemResolver with broken count: 0 129s Starting 2 pkgProblemResolver with broken count: 0 129s Done 129s The following additional packages will be installed: 129s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 129s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 129s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 129s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 129s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 129s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 129s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 129s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 129s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 129s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 129s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 129s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 129s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 129s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 129s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 129s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 129s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 129s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 129s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 129s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 129s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 129s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 129s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 129s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 129s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 129s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 129s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 129s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 129s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 129s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 129s r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationfilter 129s r-bioc-annotationhub r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 129s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion 129s r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome 129s r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger 129s r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb 129s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 129s r-bioc-genomicranges r-bioc-gviz r-bioc-interactivedisplaybase 129s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 129s r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 129s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 129s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 129s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 129s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 129s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem 129s r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster r-cran-codetools 129s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon 129s r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr 129s r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-dt 129s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 129s r-cran-filelock r-cran-fontawesome r-cran-foreign r-cran-formatr 129s r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options 129s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable 129s r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools 129s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-interp 129s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 129s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 129s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 129s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 129s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 129s r-cran-nnet r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 129s r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises 129s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 129s r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl r-cran-restfulr 129s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rsqlite 129s r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-scales r-cran-shiny 129s r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 129s r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 129s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 129s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 129s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 129s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 129s zlib1g-dev 129s Suggested packages: 129s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 129s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 129s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 129s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 129s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 129s libboost-context1.83-dev libboost-contract1.83-dev 129s libboost-coroutine1.83-dev libboost-date-time1.83-dev 129s libboost-exception1.83-dev libboost-fiber1.83-dev 129s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 129s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 129s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 129s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 129s libboost-numpy1.83-dev libboost-program-options1.83-dev 129s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 129s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 129s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 129s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 129s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 129s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 129s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 129s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 129s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 129s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 129s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 129s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 129s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-cran-testthat 129s r-bioc-experimenthub r-bioc-all r-bioc-affy r-cran-foreach r-cran-bbmisc 129s r-cran-doparallel r-bioc-shortread r-cran-batchtools r-cran-mockery 129s r-cran-webmockr r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats 129s r-cran-pheatmap r-bioc-tximport r-bioc-tximeta r-bioc-tximportdata 129s r-cran-readr r-cran-pbapply r-bioc-glmgampoi r-cran-roxygen2 r-bioc-rhdf5 129s r-cran-seuratobject r-bioc-ggbio r-cran-class r-cran-r.utils r-cran-markdown 129s r-cran-biasedurn r-cran-ellipse r-cran-gplots r-bioc-sparsematrixstats 129s r-bioc-snpstats r-cran-ff r-cran-covr r-cran-kernsmooth r-cran-kernlab 129s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-rmysql r-cran-polyclip 129s r-cran-lubridate r-cran-sp r-cran-scatterplot3d r-cran-magick r-cran-sf 129s r-cran-getopt r-cran-gam r-cran-formattable r-cran-nanotime 129s r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 129s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 129s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 129s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 129s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 129s Recommended packages: 129s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 129s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-downlit 129s r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot 129s r-cran-thematic r-cran-fastmatch r-cran-devtools r-cran-tinytest 129s r-cran-callr r-cran-covr r-cran-mockery r-cran-processx r-cran-ps 129s r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio r-cran-decor 129s r-cran-desc r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-r.utils 129s r-cran-xts r-cran-nanotime r-cran-zoo r-cran-rpostgresql r-cran-broom 129s r-cran-rmysql r-cran-future w3m | www-browser r-cran-unitizer r-cran-rsvg 129s r-cran-pkgload r-cran-hexbin r-cran-mapproj r-cran-maps r-cran-multcomp 129s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-sf r-cran-svglite 129s r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown r-cran-readr 129s r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 129s r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 129s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-usethis 129s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 129s r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 129s lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 129s x11-utils x11-xserver-utils 130s The following packages will be REMOVED: 130s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 130s The following NEW packages will be installed: 130s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 130s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 130s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 130s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 130s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 130s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 130s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 130s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 130s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 130s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 130s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 130s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 130s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 130s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 130s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 130s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 130s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 130s libjs-popper.js libjs-prettify libjs-sifter.js 130s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 130s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 130s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 130s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 130s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 130s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 130s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 130s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 130s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 130s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 130s libzzip-0-13 linux-libc-dev node-bootstrap-sass node-html5shiv 130s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 130s pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 130s r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase 130s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 130s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 130s r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 130s r-bioc-dexseq r-bioc-edger r-bioc-ensembldb r-bioc-genefilter 130s r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 130s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 130s r-bioc-gviz r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-keggrest 130s r-bioc-limma r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib 130s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 130s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 130s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass 130s r-cran-backports r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 130s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 130s r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster 130s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 130s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi 130s r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr 130s r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 130s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-foreign 130s r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 130s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 130s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms 130s r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 130s r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg 130s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 130s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 130s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit 130s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 130s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 130s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 130s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 130s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 130s r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl r-cran-restfulr 130s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rsqlite 130s r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-scales r-cran-shiny 130s r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 130s r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 130s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 130s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 130s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 130s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 130s zlib1g-dev 130s The following packages will be upgraded: 130s curl 130s 1 upgraded, 341 newly installed, 5 to remove and 0 not upgraded. 130s Need to get 489 MB/489 MB of archives. 130s After this operation, 1451 MB of additional disk space will be used. 130s Get:1 /tmp/autopkgtest.zqqNkz/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [928 B] 130s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 130s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 130s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 130s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 130s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 130s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 130s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 130s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 130s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 130s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 130s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 130s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 130s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 130s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 130s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 130s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 131s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 131s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 131s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 131s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 131s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 131s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 131s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 131s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 131s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 131s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 131s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 131s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 131s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 131s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 132s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 132s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 132s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 132s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 132s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 132s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 132s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 132s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 132s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 132s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 132s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 132s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 132s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 132s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 132s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 132s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 132s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 132s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 133s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 133s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 133s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 133s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 133s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 133s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 133s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 133s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 133s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 133s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 133s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 133s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 133s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 133s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 133s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 133s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 133s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 133s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 133s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 133s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 133s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 133s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 133s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 133s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 133s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 133s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 133s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 133s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 133s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 134s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 134s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 134s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 134s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 134s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 134s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 134s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 134s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 134s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 134s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 134s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 134s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 134s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 134s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 134s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 134s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 134s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 134s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 134s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 134s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 134s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 134s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 134s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 134s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 134s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 134s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 134s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 134s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 134s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 134s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 134s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 134s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 134s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 134s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 134s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 135s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 135s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 135s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 135s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 135s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 135s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 135s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 135s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 135s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 135s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 135s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 135s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 135s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 135s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 135s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 135s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 135s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 135s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 135s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 135s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 135s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 135s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 135s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 135s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 135s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 135s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 135s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 135s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 135s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 135s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 135s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 135s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 136s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 136s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 136s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 136s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 136s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 136s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 136s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 137s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 137s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 137s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 137s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 137s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 137s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 137s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 137s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 137s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 137s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 137s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 137s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 137s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 137s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 137s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 137s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 137s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 137s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 137s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 137s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 137s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 137s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 137s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 137s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 137s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 137s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 137s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 137s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 137s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 137s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 137s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 137s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 137s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 137s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 137s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 137s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 137s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 138s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 138s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 138s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 138s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 138s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 139s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 139s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 139s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 139s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 139s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 139s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 139s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 139s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 139s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 139s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 139s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 139s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 139s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 140s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 140s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 140s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 140s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 140s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 140s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 140s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 140s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 140s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 140s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 140s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 140s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 140s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 140s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 140s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 140s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 140s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 140s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 140s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 140s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 140s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 140s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 140s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 140s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 140s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 140s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 140s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 140s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 140s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 140s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 140s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 140s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 140s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 140s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 140s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 140s Get:243 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 140s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 140s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 140s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 140s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 140s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 140s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 140s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 140s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 140s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 140s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 141s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 141s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 141s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 141s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 141s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 141s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 141s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 141s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 141s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 141s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 141s Get:264 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 141s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 141s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 141s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 141s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 143s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 143s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 143s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 143s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 143s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 143s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 143s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 143s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 143s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 143s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 143s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 143s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 143s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 143s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 143s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 143s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 143s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 144s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 144s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 144s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 144s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 144s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 144s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 144s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 144s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nnet arm64 7.3-19-2 [111 kB] 144s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreign arm64 0.8.86-1 [240 kB] 144s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 144s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 144s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 144s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 144s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 144s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltable all 2.4.2-1 [381 kB] 144s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 144s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 144s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-chron arm64 2.3-61-2 [186 kB] 144s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 144s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 145s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 145s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 145s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 145s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-acepack arm64 1.4.2-1 [60.5 kB] 145s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hmisc arm64 5.1-1-1 [3486 kB] 145s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 145s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 145s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 145s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 145s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 145s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 145s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 145s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 145s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 145s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 145s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 146s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 146s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 146s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 146s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 146s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 146s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 146s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 146s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 146s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biovizbase arm64 1.50.0-1 [2665 kB] 146s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 146s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 146s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq2 arm64 1.42.0+dfsg-1 [1218 kB] 146s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 146s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 146s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-geneplotter all 1.80.0+dfsg-1 [1416 kB] 146s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 146s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dexseq all 1.48.0+dfsg-1 [464 kB] 146s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 147s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 147s Get:341 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 147s Get:342 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 148s Preconfiguring packages ... 148s Fetched 489 MB in 17s (28.5 MB/s) 148s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 148s wget depends on libpsl5 (>= 0.16.0). 148s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 148s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 148s 148s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 148s Removing libpsl5:arm64 (0.21.2-1build1) ... 148s Selecting previously unselected package libpsl5t64:arm64. 148s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 148s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 148s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 148s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 148s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 148s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 148s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 149s Selecting previously unselected package libcurl4t64:arm64. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 149s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 149s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 149s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 149s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 149s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 149s 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 149s Removing libpng16-16:arm64 (1.6.43-1) ... 149s Selecting previously unselected package libpng16-16t64:arm64. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 149s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 149s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 149s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 149s parted depends on libreadline8 (>= 6.0). 149s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 149s gpgsm depends on libreadline8 (>= 6.0). 149s gpgconf depends on libreadline8 (>= 6.0). 149s gpg depends on libreadline8 (>= 6.0). 149s gawk depends on libreadline8 (>= 6.0). 149s fdisk depends on libreadline8 (>= 6.0). 149s 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 149s Removing libreadline8:arm64 (8.2-3) ... 149s Selecting previously unselected package libreadline8t64:arm64. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 149s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 149s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 149s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 149s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 149s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 149s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 149s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 149s lsof depends on libtirpc3 (>= 1.0.2). 149s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 149s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 149s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 149s iproute2 depends on libtirpc3 (>= 1.0.2). 149s 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 149s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 149s Selecting previously unselected package libtirpc3t64:arm64. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 149s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 149s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 149s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 149s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 149s Selecting previously unselected package libc-dev-bin. 149s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 149s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 149s Selecting previously unselected package linux-libc-dev:arm64. 149s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 149s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 149s Selecting previously unselected package libcrypt-dev:arm64. 150s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 150s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 150s Selecting previously unselected package libtirpc-dev:arm64. 150s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 150s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 150s Selecting previously unselected package libnsl-dev:arm64. 150s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 150s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 150s Selecting previously unselected package rpcsvc-proto. 150s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 150s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 150s Selecting previously unselected package libc6-dev:arm64. 150s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 150s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 150s Selecting previously unselected package libisl23:arm64. 150s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 150s Unpacking libisl23:arm64 (0.26-3) ... 150s Selecting previously unselected package libmpc3:arm64. 150s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 150s Unpacking libmpc3:arm64 (1.3.1-1) ... 150s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 150s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 150s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 150s Selecting previously unselected package cpp-13. 150s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 150s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 150s Selecting previously unselected package cpp-aarch64-linux-gnu. 150s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 150s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 150s Selecting previously unselected package cpp. 150s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 150s Unpacking cpp (4:13.2.0-7ubuntu1) ... 150s Selecting previously unselected package libcc1-0:arm64. 150s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 150s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 150s Selecting previously unselected package libgomp1:arm64. 150s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 150s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 150s Selecting previously unselected package libitm1:arm64. 151s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 151s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libatomic1:arm64. 151s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 151s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libasan8:arm64. 151s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 151s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package liblsan0:arm64. 151s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 151s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libtsan2:arm64. 151s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 151s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libubsan1:arm64. 151s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 151s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libhwasan0:arm64. 151s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 151s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libgcc-13-dev:arm64. 151s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 151s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 151s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 151s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 151s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 151s Selecting previously unselected package gcc-13. 151s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 151s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 152s Selecting previously unselected package gcc-aarch64-linux-gnu. 152s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 152s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 152s Selecting previously unselected package gcc. 152s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 152s Unpacking gcc (4:13.2.0-7ubuntu1) ... 152s Selecting previously unselected package libstdc++-13-dev:arm64. 152s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 152s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 152s Selecting previously unselected package g++-13-aarch64-linux-gnu. 152s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 152s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 152s Selecting previously unselected package g++-13. 152s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 152s Unpacking g++-13 (13.2.0-17ubuntu2) ... 152s Selecting previously unselected package g++-aarch64-linux-gnu. 152s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 152s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 152s Selecting previously unselected package g++. 152s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 152s Unpacking g++ (4:13.2.0-7ubuntu1) ... 152s Selecting previously unselected package build-essential. 152s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 152s Unpacking build-essential (12.10ubuntu1) ... 152s Selecting previously unselected package dctrl-tools. 152s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 152s Unpacking dctrl-tools (2.24-3build2) ... 152s Selecting previously unselected package fonts-dejavu-mono. 152s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 152s Unpacking fonts-dejavu-mono (2.37-8) ... 152s Selecting previously unselected package fonts-dejavu-core. 152s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 152s Unpacking fonts-dejavu-core (2.37-8) ... 152s Selecting previously unselected package fontconfig-config. 153s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 153s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 153s Selecting previously unselected package libfontconfig1:arm64. 153s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 153s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 153s Selecting previously unselected package fontconfig. 153s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 153s Unpacking fontconfig (2.15.0-1ubuntu1) ... 153s Selecting previously unselected package fonts-font-awesome. 153s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 153s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 153s Selecting previously unselected package fonts-glyphicons-halflings. 153s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 153s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 153s Selecting previously unselected package fonts-lmodern. 153s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 153s Unpacking fonts-lmodern (2.005-1) ... 153s Selecting previously unselected package fonts-mathjax. 153s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 153s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 153s Selecting previously unselected package libgfortran5:arm64. 153s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 153s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 153s Selecting previously unselected package libgfortran-13-dev:arm64. 153s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 153s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 153s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 153s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 153s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 153s Selecting previously unselected package gfortran-13. 153s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 153s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 154s Selecting previously unselected package gfortran-aarch64-linux-gnu. 154s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 154s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 154s Selecting previously unselected package gfortran. 154s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 154s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 154s Selecting previously unselected package icu-devtools. 154s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 154s Unpacking icu-devtools (74.2-1ubuntu1) ... 154s Selecting previously unselected package javascript-common. 154s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 154s Unpacking javascript-common (11+nmu1) ... 154s Selecting previously unselected package libio-string-perl. 154s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 154s Unpacking libio-string-perl (1.08-4) ... 154s Selecting previously unselected package liblatex-tounicode-perl. 154s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 154s Unpacking liblatex-tounicode-perl (0.54-2) ... 154s Selecting previously unselected package libbibtex-parser-perl. 154s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 154s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 154s Selecting previously unselected package libblas3:arm64. 154s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 154s Unpacking libblas3:arm64 (3.12.0-3) ... 154s Selecting previously unselected package libblas-dev:arm64. 154s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 154s Unpacking libblas-dev:arm64 (3.12.0-3) ... 154s Selecting previously unselected package libboost1.83-dev:arm64. 154s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 154s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 156s Selecting previously unselected package libboost-dev:arm64. 156s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 156s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 156s Selecting previously unselected package libbz2-dev:arm64. 156s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 156s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 156s Selecting previously unselected package libpixman-1-0:arm64. 156s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 156s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 156s Selecting previously unselected package libxcb-render0:arm64. 156s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 156s Unpacking libxcb-render0:arm64 (1.15-1) ... 156s Selecting previously unselected package libxcb-shm0:arm64. 156s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 156s Unpacking libxcb-shm0:arm64 (1.15-1) ... 156s Selecting previously unselected package libxrender1:arm64. 156s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 156s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 156s Selecting previously unselected package libcairo2:arm64. 156s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 156s Unpacking libcairo2:arm64 (1.18.0-1) ... 156s Selecting previously unselected package libdatrie1:arm64. 156s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 156s Unpacking libdatrie1:arm64 (0.2.13-3) ... 156s Selecting previously unselected package libdeflate0:arm64. 156s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 156s Unpacking libdeflate0:arm64 (1.19-1) ... 156s Selecting previously unselected package libgraphite2-3:arm64. 156s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 156s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 156s Selecting previously unselected package libharfbuzz0b:arm64. 156s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 156s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 156s Selecting previously unselected package x11-common. 156s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 156s Unpacking x11-common (1:7.7+23ubuntu2) ... 156s Selecting previously unselected package libice6:arm64. 156s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 156s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 156s Selecting previously unselected package libicu-dev:arm64. 156s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 156s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 156s Selecting previously unselected package libjpeg-turbo8:arm64. 156s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 156s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 156s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 156s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 156s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 156s Selecting previously unselected package libjpeg8:arm64. 156s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 156s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 156s Selecting previously unselected package libjpeg8-dev:arm64. 156s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 156s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 156s Selecting previously unselected package libjpeg-dev:arm64. 156s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 156s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 156s Selecting previously unselected package libjs-bootstrap. 157s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 157s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 157s Selecting previously unselected package libjs-popper.js. 157s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 157s Unpacking libjs-popper.js (1.16.1+ds-6) ... 157s Selecting previously unselected package libjs-bootstrap4. 157s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 157s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 157s Selecting previously unselected package libjs-d3. 157s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 157s Unpacking libjs-d3 (3.5.17-4) ... 157s Selecting previously unselected package libjs-es5-shim. 157s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 157s Unpacking libjs-es5-shim (4.6.7-2) ... 157s Selecting previously unselected package libjs-highlight.js. 157s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 157s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 157s Selecting previously unselected package libjs-jquery. 157s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 157s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 157s Selecting previously unselected package libjs-jquery-datatables. 157s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 157s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 157s Selecting previously unselected package libjs-jquery-datatables-extensions. 157s Preparing to unpack .../085-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 157s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 157s Selecting previously unselected package libjs-sifter.js. 157s Preparing to unpack .../086-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 157s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 157s Selecting previously unselected package libjs-microplugin.js. 157s Preparing to unpack .../087-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 157s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 157s Selecting previously unselected package libjs-jquery-selectize.js. 157s Preparing to unpack .../088-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb 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(2023.20230311.66589-9) ... 157s Selecting previously unselected package liblapack3:arm64. 157s Preparing to unpack .../094-liblapack3_3.12.0-3_arm64.deb ... 157s Unpacking liblapack3:arm64 (3.12.0-3) ... 157s Selecting previously unselected package liblapack-dev:arm64. 157s Preparing to unpack .../095-liblapack-dev_3.12.0-3_arm64.deb ... 157s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 158s Selecting previously unselected package liblerc4:arm64. 158s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 158s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 158s Selecting previously unselected package liblua5.4-0:arm64. 158s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_arm64.deb ... 158s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 158s Selecting previously unselected package libncurses-dev:arm64. 158s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 158s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 158s Selecting previously unselected package libthai-data. 158s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 158s Unpacking libthai-data (0.1.29-2) ... 158s Selecting previously unselected package libthai0:arm64. 158s Preparing to unpack .../100-libthai0_0.1.29-2_arm64.deb ... 158s Unpacking libthai0:arm64 (0.1.29-2) ... 158s Selecting previously unselected package libpango-1.0-0:arm64. 158s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 158s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 158s Selecting previously unselected package libpangoft2-1.0-0:arm64. 158s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 158s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 158s Selecting previously unselected package libpangocairo-1.0-0:arm64. 158s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 158s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 158s Selecting previously unselected package libpaper1:arm64. 158s Preparing to unpack .../104-libpaper1_1.1.29_arm64.deb ... 158s Unpacking libpaper1:arm64 (1.1.29) ... 158s Selecting previously unselected package libpaper-utils. 158s Preparing to unpack .../105-libpaper-utils_1.1.29_arm64.deb ... 158s Unpacking libpaper-utils (1.1.29) ... 158s Selecting previously unselected package libpcre2-16-0:arm64. 158s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 158s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 158s Selecting previously unselected package libpcre2-32-0:arm64. 158s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 158s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 158s Selecting previously unselected package libpcre2-posix3:arm64. 158s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 158s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 158s Selecting previously unselected package libpcre2-dev:arm64. 158s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 158s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 158s Selecting previously unselected package libpkgconf3:arm64. 158s Preparing to unpack .../110-libpkgconf3_1.8.1-2_arm64.deb ... 158s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 158s Selecting previously unselected package zlib1g-dev:arm64. 158s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 158s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 158s Selecting previously unselected package libpng-dev:arm64. 158s Preparing to unpack .../112-libpng-dev_1.6.43-3_arm64.deb ... 158s Unpacking libpng-dev:arm64 (1.6.43-3) ... 159s Selecting previously unselected package libpotrace0:arm64. 159s Preparing to unpack .../113-libpotrace0_1.16-2_arm64.deb ... 159s Unpacking libpotrace0:arm64 (1.16-2) ... 159s Selecting previously unselected package libptexenc1:arm64. 159s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_arm64.deb ... 159s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 159s Selecting previously unselected package libreadline-dev:arm64. 159s Preparing to unpack .../115-libreadline-dev_8.2-3.1_arm64.deb ... 159s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 159s Selecting previously unselected package libsharpyuv0:arm64. 159s Preparing to unpack .../116-libsharpyuv0_1.3.2-0.4_arm64.deb ... 159s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 159s Selecting previously unselected package libsm6:arm64. 159s Preparing to unpack .../117-libsm6_2%3a1.2.3-1build2_arm64.deb ... 159s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 159s Selecting previously unselected package libsynctex2:arm64. 159s Preparing to unpack .../118-libsynctex2_2023.20230311.66589-9_arm64.deb ... 159s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 159s Selecting previously unselected package libtcl8.6:arm64. 159s Preparing to unpack .../119-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 159s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 159s Selecting previously unselected package libteckit0:arm64. 159s Preparing to unpack .../120-libteckit0_2.5.12+ds1-1_arm64.deb ... 159s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 159s Selecting previously unselected package libtexlua53-5:arm64. 159s Preparing to unpack .../121-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 159s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 159s Selecting previously unselected package libjbig0:arm64. 159s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 159s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 159s Selecting previously unselected package libwebp7:arm64. 159s Preparing to unpack .../123-libwebp7_1.3.2-0.4_arm64.deb ... 159s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 159s Selecting previously unselected package libtiff6:arm64. 159s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 159s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 159s Selecting previously unselected package libxft2:arm64. 159s Preparing to unpack .../125-libxft2_2.3.6-1_arm64.deb ... 159s Unpacking libxft2:arm64 (2.3.6-1) ... 159s Selecting previously unselected package libxss1:arm64. 159s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_arm64.deb ... 159s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 159s Selecting previously unselected package libtk8.6:arm64. 159s Preparing to unpack .../127-libtk8.6_8.6.13-2_arm64.deb ... 159s Unpacking libtk8.6:arm64 (8.6.13-2) ... 159s Selecting previously unselected package libxt6t64:arm64. 159s Preparing to unpack .../128-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 159s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 159s Selecting previously unselected package libxmu6:arm64. 159s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_arm64.deb ... 159s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 159s Selecting previously unselected package libxpm4:arm64. 159s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_arm64.deb ... 159s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 159s Selecting previously unselected package libxaw7:arm64. 159s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_arm64.deb ... 159s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 159s Selecting previously unselected package libxi6:arm64. 159s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_arm64.deb ... 159s Unpacking libxi6:arm64 (2:1.8.1-1) ... 159s Selecting previously unselected package libzzip-0-13:arm64. 159s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 159s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 159s Selecting previously unselected package node-bootstrap-sass. 159s Preparing to unpack .../134-node-bootstrap-sass_3.4.3-2_all.deb ... 159s Unpacking node-bootstrap-sass (3.4.3-2) ... 159s Selecting previously unselected package node-html5shiv. 160s Preparing to unpack .../135-node-html5shiv_3.7.3+dfsg-5_all.deb ... 160s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 160s Selecting previously unselected package node-normalize.css. 160s Preparing to unpack .../136-node-normalize.css_8.0.1-5_all.deb ... 160s Unpacking node-normalize.css (8.0.1-5) ... 160s Selecting previously unselected package pandoc-data. 160s Preparing to unpack .../137-pandoc-data_3.1.3-1_all.deb ... 160s Unpacking pandoc-data (3.1.3-1) ... 160s Selecting previously unselected package pandoc. 160s Preparing to unpack .../138-pandoc_3.1.3+ds-2_arm64.deb ... 160s Unpacking pandoc (3.1.3+ds-2) ... 161s Selecting previously unselected package pkgconf-bin. 161s Preparing to unpack .../139-pkgconf-bin_1.8.1-2_arm64.deb ... 161s Unpacking pkgconf-bin (1.8.1-2) ... 161s Selecting previously unselected package pkgconf:arm64. 161s Preparing to unpack .../140-pkgconf_1.8.1-2_arm64.deb ... 161s Unpacking pkgconf:arm64 (1.8.1-2) ... 161s Selecting previously unselected package pkg-config:arm64. 161s Preparing to unpack .../141-pkg-config_1.8.1-2_arm64.deb ... 161s Unpacking pkg-config:arm64 (1.8.1-2) ... 161s Selecting previously unselected package zip. 161s Preparing to unpack .../142-zip_3.0-13_arm64.deb ... 161s Unpacking zip (3.0-13) ... 161s Selecting previously unselected package unzip. 161s Preparing to unpack .../143-unzip_6.0-28ubuntu3_arm64.deb ... 161s Unpacking unzip (6.0-28ubuntu3) ... 161s Selecting previously unselected package xdg-utils. 161s Preparing to unpack .../144-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 161s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 161s Selecting previously unselected package r-base-core. 161s Preparing to unpack .../145-r-base-core_4.3.3-2build1_arm64.deb ... 161s Unpacking r-base-core (4.3.3-2build1) ... 161s Selecting previously unselected package liblzma-dev:arm64. 161s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 161s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 161s Selecting previously unselected package r-base-dev. 161s Preparing to unpack .../147-r-base-dev_4.3.3-2build1_all.deb ... 161s Unpacking r-base-dev (4.3.3-2build1) ... 161s Selecting previously unselected package pkg-r-autopkgtest. 162s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 162s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 162s Selecting previously unselected package r-bioc-biocgenerics. 162s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 162s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 162s Selecting previously unselected package r-bioc-biobase. 162s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 162s Unpacking r-bioc-biobase (2.62.0-1) ... 162s Selecting previously unselected package r-bioc-s4vectors. 162s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 162s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 162s Selecting previously unselected package r-bioc-iranges. 162s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 162s Unpacking r-bioc-iranges (2.36.0-1) ... 162s Selecting previously unselected package r-cran-dbi. 162s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 162s Unpacking r-cran-dbi (1.2.2-1) ... 162s Selecting previously unselected package r-cran-bit. 162s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 162s Unpacking r-cran-bit (4.0.5-1) ... 162s Selecting previously unselected package r-cran-bit64. 162s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 162s Unpacking r-cran-bit64 (4.0.5-1) ... 162s Selecting previously unselected package r-cran-rlang. 162s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 162s Unpacking r-cran-rlang (1.1.3-1) ... 162s Selecting previously unselected package r-cran-cli. 162s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 162s Unpacking r-cran-cli (3.6.2-1) ... 162s Selecting previously unselected package r-cran-glue. 162s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 162s Unpacking r-cran-glue (1.7.0-1) ... 162s Selecting previously unselected package r-cran-lifecycle. 162s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 162s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 162s Selecting previously unselected package r-cran-vctrs. 162s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 162s Unpacking r-cran-vctrs (0.6.5-1) ... 162s Selecting previously unselected package r-cran-blob. 162s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 162s Unpacking r-cran-blob (1.2.4-1) ... 162s Selecting previously unselected package r-cran-fastmap. 162s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 162s Unpacking r-cran-fastmap (1.1.1-1) ... 162s Selecting previously unselected package r-cran-cachem. 162s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 162s Unpacking r-cran-cachem (1.0.8-1) ... 163s Selecting previously unselected package r-cran-memoise. 163s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 163s Unpacking r-cran-memoise (2.0.1-1) ... 163s Selecting previously unselected package r-cran-pkgconfig. 163s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 163s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 163s Selecting previously unselected package r-cran-plogr. 163s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 163s Unpacking r-cran-plogr (0.2.0-3build1) ... 163s Selecting previously unselected package r-cran-cpp11. 163s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 163s Unpacking r-cran-cpp11 (0.4.7-1) ... 163s Selecting previously unselected package r-cran-rsqlite. 163s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 163s Unpacking r-cran-rsqlite (2.3.4-1) ... 163s Selecting previously unselected package r-cran-curl. 163s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 163s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 163s Selecting previously unselected package r-cran-jsonlite. 163s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 163s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 163s Selecting previously unselected package r-cran-mime. 163s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 163s Unpacking r-cran-mime (0.12-1) ... 163s Selecting previously unselected package r-cran-sys. 163s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 163s Unpacking r-cran-sys (3.4.2-1) ... 163s Selecting previously unselected package r-cran-askpass. 163s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 163s Unpacking r-cran-askpass (1.2.0-1) ... 163s Selecting previously unselected package r-cran-openssl. 163s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 163s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 163s Selecting previously unselected package r-cran-r6. 163s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 163s Unpacking r-cran-r6 (2.5.1-1) ... 163s Selecting previously unselected package r-cran-httr. 164s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 164s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 164s Selecting previously unselected package r-cran-png. 164s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 164s Unpacking r-cran-png (0.1-8-1) ... 164s Selecting previously unselected package r-bioc-zlibbioc. 164s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 164s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 164s Selecting previously unselected package r-bioc-xvector. 164s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 164s Unpacking r-bioc-xvector (0.42.0-1) ... 164s Selecting previously unselected package r-cran-bitops. 164s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 164s Unpacking r-cran-bitops (1.0-7-1) ... 164s Selecting previously unselected package r-cran-rcurl. 164s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 164s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 164s Selecting previously unselected package r-bioc-genomeinfodbdata. 164s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 164s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 164s Selecting previously unselected package r-bioc-genomeinfodb. 164s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 164s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 164s Selecting previously unselected package r-cran-crayon. 164s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 164s Unpacking r-cran-crayon (1.5.2-1) ... 164s Selecting previously unselected package r-bioc-biostrings. 164s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 164s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 164s Selecting previously unselected package r-bioc-keggrest. 164s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 164s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 164s Selecting previously unselected package r-bioc-annotationdbi. 164s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 164s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 164s Selecting previously unselected package r-cran-xml. 164s Preparing to unpack .../188-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 164s Unpacking r-cran-xml (3.99-0.16.1-1) ... 164s Selecting previously unselected package r-cran-xtable. 165s Preparing to unpack .../189-r-cran-xtable_1%3a1.8-4-2_all.deb ... 165s Unpacking r-cran-xtable (1:1.8-4-2) ... 165s Selecting previously unselected package r-bioc-annotate. 165s Preparing to unpack .../190-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 165s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 165s Selecting previously unselected package r-bioc-genomicranges. 165s Preparing to unpack .../191-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 165s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 165s Selecting previously unselected package r-cran-lazyeval. 165s Preparing to unpack .../192-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 165s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 165s Selecting previously unselected package r-bioc-annotationfilter. 165s Preparing to unpack .../193-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 165s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 165s Selecting previously unselected package r-cran-generics. 165s Preparing to unpack .../194-r-cran-generics_0.1.3-1_all.deb ... 165s Unpacking r-cran-generics (0.1.3-1) ... 165s Selecting previously unselected package r-cran-magrittr. 165s Preparing to unpack .../195-r-cran-magrittr_2.0.3-1_arm64.deb ... 165s Unpacking r-cran-magrittr (2.0.3-1) ... 165s Selecting previously unselected package r-cran-fansi. 165s Preparing to unpack .../196-r-cran-fansi_1.0.5-1_arm64.deb ... 165s Unpacking r-cran-fansi (1.0.5-1) ... 165s Selecting previously unselected package r-cran-utf8. 165s Preparing to unpack .../197-r-cran-utf8_1.2.4-1_arm64.deb ... 165s Unpacking r-cran-utf8 (1.2.4-1) ... 165s Selecting previously unselected package r-cran-pillar. 165s Preparing to unpack .../198-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 165s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 165s Selecting previously unselected package r-cran-tibble. 165s Preparing to unpack .../199-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 165s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 165s Selecting previously unselected package r-cran-withr. 165s Preparing to unpack .../200-r-cran-withr_2.5.0-1_all.deb ... 165s Unpacking r-cran-withr (2.5.0-1) ... 165s Selecting previously unselected package r-cran-tidyselect. 165s Preparing to unpack .../201-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 165s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 165s Selecting previously unselected package r-cran-dplyr. 165s Preparing to unpack .../202-r-cran-dplyr_1.1.4-1_arm64.deb ... 165s Unpacking r-cran-dplyr (1.1.4-1) ... 165s Selecting previously unselected package r-cran-purrr. 165s Preparing to unpack .../203-r-cran-purrr_1.0.2-1_arm64.deb ... 165s Unpacking r-cran-purrr (1.0.2-1) ... 165s Selecting previously unselected package r-cran-stringi. 165s Preparing to unpack .../204-r-cran-stringi_1.8.3-1_arm64.deb ... 165s Unpacking r-cran-stringi (1.8.3-1) ... 165s Selecting previously unselected package r-cran-stringr. 165s Preparing to unpack .../205-r-cran-stringr_1.5.1-1_all.deb ... 165s Unpacking r-cran-stringr (1.5.1-1) ... 165s Selecting previously unselected package r-cran-tidyr. 165s Preparing to unpack .../206-r-cran-tidyr_1.3.1-1_arm64.deb ... 165s Unpacking r-cran-tidyr (1.3.1-1) ... 165s Selecting previously unselected package r-cran-dbplyr. 165s Preparing to unpack .../207-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 165s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 166s Selecting previously unselected package r-cran-filelock. 166s Preparing to unpack .../208-r-cran-filelock_1.0.3-1_arm64.deb ... 166s Unpacking r-cran-filelock (1.0.3-1) ... 166s Selecting previously unselected package r-bioc-biocfilecache. 166s Preparing to unpack .../209-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 166s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 166s Selecting previously unselected package r-cran-biocmanager. 166s Preparing to unpack .../210-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 166s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 166s Selecting previously unselected package r-bioc-biocversion. 166s Preparing to unpack .../211-r-bioc-biocversion_3.18.1-1_all.deb ... 166s Unpacking r-bioc-biocversion (3.18.1-1) ... 166s Selecting previously unselected package r-cran-rappdirs. 166s Preparing to unpack .../212-r-cran-rappdirs_0.3.3-1_arm64.deb ... 166s Unpacking r-cran-rappdirs (0.3.3-1) ... 166s Selecting previously unselected package r-cran-yaml. 166s Preparing to unpack .../213-r-cran-yaml_2.3.8-1_arm64.deb ... 166s Unpacking r-cran-yaml (2.3.8-1) ... 166s Selecting previously unselected package r-cran-littler. 166s Preparing to unpack .../214-r-cran-littler_0.3.19-1_arm64.deb ... 166s Unpacking r-cran-littler (0.3.19-1) ... 166s Selecting previously unselected package r-cran-pkgkitten. 166s Preparing to unpack .../215-r-cran-pkgkitten_0.2.3-1_all.deb ... 166s Unpacking r-cran-pkgkitten (0.2.3-1) ... 166s Selecting previously unselected package r-cran-rcpp. 166s Preparing to unpack .../216-r-cran-rcpp_1.0.12-1_arm64.deb ... 166s Unpacking r-cran-rcpp (1.0.12-1) ... 166s Selecting previously unselected package r-cran-later. 166s Preparing to unpack .../217-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 166s Unpacking r-cran-later (1.3.2+dfsg-1) ... 166s Selecting previously unselected package r-cran-promises. 166s Preparing to unpack .../218-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 166s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 166s Selecting previously unselected package r-cran-httpuv. 166s Preparing to unpack .../219-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 166s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 166s Selecting previously unselected package r-cran-base64enc. 166s Preparing to unpack .../220-r-cran-base64enc_0.1-3-3_arm64.deb ... 166s Unpacking r-cran-base64enc (0.1-3-3) ... 166s Selecting previously unselected package r-cran-digest. 166s Preparing to unpack .../221-r-cran-digest_0.6.34-1_arm64.deb ... 166s Unpacking r-cran-digest (0.6.34-1) ... 166s Selecting previously unselected package r-cran-ellipsis. 166s Preparing to unpack .../222-r-cran-ellipsis_0.3.2-2_arm64.deb ... 166s Unpacking r-cran-ellipsis (0.3.2-2) ... 166s Selecting previously unselected package r-cran-htmltools. 166s Preparing to unpack .../223-r-cran-htmltools_0.5.7-1_arm64.deb ... 166s Unpacking r-cran-htmltools (0.5.7-1) ... 166s Selecting previously unselected package r-cran-fontawesome. 166s Preparing to unpack .../224-r-cran-fontawesome_0.5.2-1_all.deb ... 166s Unpacking r-cran-fontawesome (0.5.2-1) ... 166s Selecting previously unselected package r-cran-sourcetools. 166s Preparing to unpack .../225-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 166s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 166s Selecting previously unselected package r-cran-commonmark. 166s Preparing to unpack .../226-r-cran-commonmark_1.9.1-1_arm64.deb ... 166s Unpacking r-cran-commonmark (1.9.1-1) ... 166s Selecting previously unselected package r-cran-jquerylib. 166s Preparing to unpack .../227-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 166s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 167s Selecting previously unselected package r-cran-fs. 167s Preparing to unpack .../228-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 167s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 167s Selecting previously unselected package r-cran-sass. 167s Preparing to unpack .../229-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 167s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 167s Selecting previously unselected package r-cran-bslib. 167s Preparing to unpack .../230-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 167s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 167s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 167s Preparing to unpack .../231-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 167s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 167s Selecting previously unselected package r-cran-shiny. 167s Preparing to unpack .../232-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 167s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 167s Selecting previously unselected package r-cran-evaluate. 167s Preparing to unpack .../233-r-cran-evaluate_0.23-1_all.deb ... 167s Unpacking r-cran-evaluate (0.23-1) ... 167s Selecting previously unselected package r-cran-xfun. 167s Preparing to unpack .../234-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 167s Unpacking r-cran-xfun (0.41+dfsg-1) ... 167s Selecting previously unselected package r-cran-highr. 167s Preparing to unpack .../235-r-cran-highr_0.10+dfsg-1_all.deb ... 167s Unpacking r-cran-highr (0.10+dfsg-1) ... 167s Selecting previously unselected package libjs-mathjax. 167s Preparing to unpack .../236-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 167s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 168s Selecting previously unselected package r-cran-knitr. 168s Preparing to unpack .../237-r-cran-knitr_1.45+dfsg-1_all.deb ... 168s Unpacking r-cran-knitr (1.45+dfsg-1) ... 168s Selecting previously unselected package r-cran-tinytex. 168s Preparing to unpack .../238-r-cran-tinytex_0.49-1_all.deb ... 168s Unpacking r-cran-tinytex (0.49-1) ... 168s Selecting previously unselected package libjs-modernizr. 168s Preparing to unpack .../239-libjs-modernizr_2.6.2+ds1-5_all.deb ... 168s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 168s Selecting previously unselected package r-cran-rmarkdown. 168s Preparing to unpack .../240-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 168s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 168s Selecting previously unselected package r-cran-htmlwidgets. 168s Preparing to unpack .../241-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 168s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 168s Selecting previously unselected package r-cran-crosstalk. 168s Preparing to unpack .../242-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 168s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 168s Selecting previously unselected package r-cran-dt. 168s Preparing to unpack .../243-r-cran-dt_0.31+dfsg-1_all.deb ... 168s Unpacking r-cran-dt (0.31+dfsg-1) ... 168s Selecting previously unselected package r-bioc-interactivedisplaybase. 168s Preparing to unpack .../244-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 168s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 168s Selecting previously unselected package r-bioc-annotationhub. 168s Preparing to unpack .../245-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 168s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 168s Selecting previously unselected package r-bioc-biocio. 168s Preparing to unpack .../246-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 168s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 168s Selecting previously unselected package r-cran-formatr. 168s Preparing to unpack .../247-r-cran-formatr_1.14-1_all.deb ... 168s Unpacking r-cran-formatr (1.14-1) ... 168s Selecting previously unselected package r-cran-lambda.r. 168s Preparing to unpack .../248-r-cran-lambda.r_1.2.4-2build1_all.deb ... 168s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 168s Selecting previously unselected package r-cran-futile.options. 168s Preparing to unpack .../249-r-cran-futile.options_1.0.1-3build1_all.deb ... 168s Unpacking r-cran-futile.options (1.0.1-3build1) ... 168s Selecting previously unselected package r-cran-futile.logger. 168s Preparing to unpack .../250-r-cran-futile.logger_1.4.3-4build1_all.deb ... 168s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 169s Selecting previously unselected package r-cran-snow. 169s Preparing to unpack .../251-r-cran-snow_1%3a0.4.4-2_all.deb ... 169s Unpacking r-cran-snow (1:0.4.4-2) ... 169s Selecting previously unselected package r-cran-codetools. 169s Preparing to unpack .../252-r-cran-codetools_0.2-19-1_all.deb ... 169s Unpacking r-cran-codetools (0.2-19-1) ... 169s Selecting previously unselected package r-cran-bh. 169s Preparing to unpack .../253-r-cran-bh_1.84.0-1_all.deb ... 169s Unpacking r-cran-bh (1.84.0-1) ... 169s Selecting previously unselected package r-bioc-biocparallel. 169s Preparing to unpack .../254-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 169s Unpacking r-bioc-biocparallel (1.36.0-1) ... 169s Selecting previously unselected package r-cran-bookdown. 169s Preparing to unpack .../255-r-cran-bookdown_0.37+dfsg-1_all.deb ... 169s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 169s Selecting previously unselected package tex-common. 169s Preparing to unpack .../256-tex-common_6.18_all.deb ... 169s Unpacking tex-common (6.18) ... 169s Selecting previously unselected package t1utils. 169s Preparing to unpack .../257-t1utils_1.41-4build2_arm64.deb ... 169s Unpacking t1utils (1.41-4build2) ... 169s Selecting previously unselected package texlive-binaries. 169s Preparing to unpack .../258-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 169s Unpacking texlive-binaries (2023.20230311.66589-9) ... 169s Selecting previously unselected package texlive-base. 169s Preparing to unpack .../259-texlive-base_2023.20240207-1_all.deb ... 169s Unpacking texlive-base (2023.20240207-1) ... 170s Selecting previously unselected package texlive-latex-base. 170s Preparing to unpack .../260-texlive-latex-base_2023.20240207-1_all.deb ... 170s Unpacking texlive-latex-base (2023.20240207-1) ... 171s Selecting previously unselected package texlive-bibtex-extra. 171s Preparing to unpack .../261-texlive-bibtex-extra_2023.20240207-1_all.deb ... 171s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 173s Selecting previously unselected package r-bioc-biocstyle. 174s Preparing to unpack .../262-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 174s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-hms. 174s Preparing to unpack .../263-r-cran-hms_1.1.3-1_all.deb ... 174s Unpacking r-cran-hms (1.1.3-1) ... 174s Selecting previously unselected package r-cran-prettyunits. 174s Preparing to unpack .../264-r-cran-prettyunits_1.2.0-1_all.deb ... 174s Unpacking r-cran-prettyunits (1.2.0-1) ... 174s Selecting previously unselected package r-cran-progress. 174s Preparing to unpack .../265-r-cran-progress_1.2.3-1_all.deb ... 174s Unpacking r-cran-progress (1.2.3-1) ... 174s Selecting previously unselected package r-cran-xml2. 174s Preparing to unpack .../266-r-cran-xml2_1.3.6-1_arm64.deb ... 174s Unpacking r-cran-xml2 (1.3.6-1) ... 174s Selecting previously unselected package r-bioc-biomart. 174s Preparing to unpack .../267-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 174s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 174s Selecting previously unselected package r-cran-farver. 174s Preparing to unpack .../268-r-cran-farver_2.1.1-1_arm64.deb ... 174s Unpacking r-cran-farver (2.1.1-1) ... 174s Selecting previously unselected package r-cran-labeling. 174s Preparing to unpack .../269-r-cran-labeling_0.4.3-1_all.deb ... 174s Unpacking r-cran-labeling (0.4.3-1) ... 174s Selecting previously unselected package r-cran-colorspace. 174s Preparing to unpack .../270-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 174s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 174s Selecting previously unselected package r-cran-munsell. 174s Preparing to unpack .../271-r-cran-munsell_0.5.0-2build1_all.deb ... 174s Unpacking r-cran-munsell (0.5.0-2build1) ... 174s Selecting previously unselected package r-cran-rcolorbrewer. 174s Preparing to unpack .../272-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 174s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 174s Selecting previously unselected package r-cran-viridislite. 174s Preparing to unpack .../273-r-cran-viridislite_0.4.2-2_all.deb ... 174s Unpacking r-cran-viridislite (0.4.2-2) ... 174s Selecting previously unselected package r-cran-scales. 174s Preparing to unpack .../274-r-cran-scales_1.3.0-1_all.deb ... 174s Unpacking r-cran-scales (1.3.0-1) ... 174s Selecting previously unselected package r-cran-gtable. 174s Preparing to unpack .../275-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 174s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 174s Selecting previously unselected package r-cran-isoband. 174s Preparing to unpack .../276-r-cran-isoband_0.2.7-1_arm64.deb ... 174s Unpacking r-cran-isoband (0.2.7-1) ... 174s Selecting previously unselected package r-cran-mass. 174s Preparing to unpack .../277-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 174s Unpacking r-cran-mass (7.3-60.0.1-1) ... 174s Selecting previously unselected package r-cran-lattice. 174s Preparing to unpack .../278-r-cran-lattice_0.22-5-1_arm64.deb ... 174s Unpacking r-cran-lattice (0.22-5-1) ... 174s Selecting previously unselected package r-cran-nlme. 174s Preparing to unpack .../279-r-cran-nlme_3.1.164-1_arm64.deb ... 174s Unpacking r-cran-nlme (3.1.164-1) ... 174s Selecting previously unselected package r-cran-matrix. 175s Preparing to unpack .../280-r-cran-matrix_1.6-5-1_arm64.deb ... 175s Unpacking r-cran-matrix (1.6-5-1) ... 175s Selecting previously unselected package r-cran-mgcv. 175s Preparing to unpack .../281-r-cran-mgcv_1.9-1-1_arm64.deb ... 175s Unpacking r-cran-mgcv (1.9-1-1) ... 175s Selecting previously unselected package r-cran-ggplot2. 175s Preparing to unpack .../282-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 175s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 175s Selecting previously unselected package r-cran-cluster. 175s Preparing to unpack .../283-r-cran-cluster_2.1.6-1_arm64.deb ... 175s Unpacking r-cran-cluster (2.1.6-1) ... 175s Selecting previously unselected package r-cran-survival. 175s Preparing to unpack .../284-r-cran-survival_3.5-8-1_arm64.deb ... 175s Unpacking r-cran-survival (3.5-8-1) ... 175s Selecting previously unselected package r-cran-rpart. 175s Preparing to unpack .../285-r-cran-rpart_4.1.23-1_arm64.deb ... 175s Unpacking r-cran-rpart (4.1.23-1) ... 175s Selecting previously unselected package r-cran-nnet. 175s Preparing to unpack .../286-r-cran-nnet_7.3-19-2_arm64.deb ... 175s Unpacking r-cran-nnet (7.3-19-2) ... 175s Selecting previously unselected package r-cran-foreign. 175s Preparing to unpack .../287-r-cran-foreign_0.8.86-1_arm64.deb ... 175s Unpacking r-cran-foreign (0.8.86-1) ... 175s Selecting previously unselected package r-cran-gridextra. 175s Preparing to unpack .../288-r-cran-gridextra_2.3-3build1_all.deb ... 175s Unpacking r-cran-gridextra (2.3-3build1) ... 175s Selecting previously unselected package r-cran-data.table. 175s Preparing to unpack .../289-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 175s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 175s Selecting previously unselected package r-cran-backports. 175s Preparing to unpack .../290-r-cran-backports_1.4.1-1_arm64.deb ... 175s Unpacking r-cran-backports (1.4.1-1) ... 176s Selecting previously unselected package r-cran-checkmate. 176s Preparing to unpack .../291-r-cran-checkmate_2.3.1-1_arm64.deb ... 176s Unpacking r-cran-checkmate (2.3.1-1) ... 176s Selecting previously unselected package r-cran-rstudioapi. 176s Preparing to unpack .../292-r-cran-rstudioapi_0.15.0-1_all.deb ... 176s Unpacking r-cran-rstudioapi (0.15.0-1) ... 176s Selecting previously unselected package r-cran-htmltable. 176s Preparing to unpack .../293-r-cran-htmltable_2.4.2-1_all.deb ... 176s Unpacking r-cran-htmltable (2.4.2-1) ... 176s Selecting previously unselected package r-cran-viridis. 176s Preparing to unpack .../294-r-cran-viridis_0.6.5-1_all.deb ... 176s Unpacking r-cran-viridis (0.6.5-1) ... 176s Selecting previously unselected package r-cran-formula. 176s Preparing to unpack .../295-r-cran-formula_1.2-5-1_all.deb ... 176s Unpacking r-cran-formula (1.2-5-1) ... 176s Selecting previously unselected package r-cran-chron. 176s Preparing to unpack .../296-r-cran-chron_2.3-61-2_arm64.deb ... 176s Unpacking r-cran-chron (2.3-61-2) ... 176s Selecting previously unselected package r-cran-jpeg. 176s Preparing to unpack .../297-r-cran-jpeg_0.1-10-1_arm64.deb ... 176s Unpacking r-cran-jpeg (0.1-10-1) ... 176s Selecting previously unselected package r-cran-deldir. 176s Preparing to unpack .../298-r-cran-deldir_2.0-4-1_arm64.deb ... 176s Unpacking r-cran-deldir (2.0-4-1) ... 176s Selecting previously unselected package r-cran-rcppeigen. 176s Preparing to unpack .../299-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 176s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 176s Selecting previously unselected package r-cran-interp. 176s Preparing to unpack .../300-r-cran-interp_1.1-6-1_arm64.deb ... 176s Unpacking r-cran-interp (1.1-6-1) ... 176s Selecting previously unselected package r-cran-latticeextra. 176s Preparing to unpack .../301-r-cran-latticeextra_0.6-30-1_all.deb ... 176s Unpacking r-cran-latticeextra (0.6-30-1) ... 176s Selecting previously unselected package r-cran-acepack. 176s Preparing to unpack .../302-r-cran-acepack_1.4.2-1_arm64.deb ... 176s Unpacking r-cran-acepack (1.4.2-1) ... 177s Selecting previously unselected package r-cran-hmisc. 177s Preparing to unpack .../303-r-cran-hmisc_5.1-1-1_arm64.deb ... 177s Unpacking r-cran-hmisc (5.1-1-1) ... 177s Selecting previously unselected package r-cran-dichromat. 177s Preparing to unpack .../304-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 177s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 177s Selecting previously unselected package r-cran-matrixstats. 177s Preparing to unpack .../305-r-cran-matrixstats_1.2.0-1_arm64.deb ... 177s Unpacking r-cran-matrixstats (1.2.0-1) ... 177s Selecting previously unselected package r-bioc-matrixgenerics. 177s Preparing to unpack .../306-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 177s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 177s Selecting previously unselected package r-cran-abind. 177s Preparing to unpack .../307-r-cran-abind_1.4-5-2_all.deb ... 177s Unpacking r-cran-abind (1.4-5-2) ... 177s Selecting previously unselected package r-bioc-s4arrays. 177s Preparing to unpack .../308-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 177s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 177s Selecting previously unselected package r-bioc-sparsearray. 177s Preparing to unpack .../309-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 177s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 177s Selecting previously unselected package r-bioc-delayedarray. 177s Preparing to unpack .../310-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 177s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 177s Selecting previously unselected package r-bioc-summarizedexperiment. 177s Preparing to unpack .../311-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 177s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 177s Selecting previously unselected package r-bioc-rhtslib. 177s Preparing to unpack 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Unpacking r-bioc-rtracklayer (1.62.0-1) ... 178s Selecting previously unselected package r-bioc-genomicfeatures. 178s Preparing to unpack .../318-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 178s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 178s Selecting previously unselected package r-bioc-bsgenome. 178s Preparing to unpack .../319-r-bioc-bsgenome_1.70.2-1_all.deb ... 178s Unpacking r-bioc-bsgenome (1.70.2-1) ... 178s Selecting previously unselected package r-bioc-variantannotation. 178s Preparing to unpack .../320-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 178s Unpacking r-bioc-variantannotation (1.48.1-1) ... 178s Selecting previously unselected package r-bioc-protgenerics. 178s Preparing to unpack .../321-r-bioc-protgenerics_1.34.0-1_all.deb ... 178s Unpacking r-bioc-protgenerics (1.34.0-1) ... 178s Selecting previously unselected package r-bioc-ensembldb. 178s Preparing to unpack .../322-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 178s Unpacking r-bioc-ensembldb 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done. 183s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 183s Setting up libxft2:arm64 (2.3.6-1) ... 183s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 183s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 183s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 183s Setting up cpp-13 (13.2.0-17ubuntu2) ... 183s Setting up libtk8.6:arm64 (8.6.13-2) ... 183s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 183s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 183s Setting up libreadline-dev:arm64 (8.2-3.1) ... 183s Setting up libcairo2:arm64 (1.18.0-1) ... 183s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 183s Setting up gcc-13 (13.2.0-17ubuntu2) ... 183s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 183s Setting up cpp (4:13.2.0-7ubuntu1) ... 183s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 183s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 183s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 183s Setting up 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185s Setting up r-cran-mass (7.3-60.0.1-1) ... 185s Setting up r-cran-checkmate (2.3.1-1) ... 185s Setting up r-cran-acepack (1.4.2-1) ... 185s Setting up r-cran-snow (1:0.4.4-2) ... 185s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 185s Setting up r-cran-glue (1.7.0-1) ... 185s Setting up r-cran-foreign (0.8.86-1) ... 185s Setting up r-cran-bit (4.0.5-1) ... 185s Setting up r-cran-xtable (1:1.8-4-2) ... 185s Setting up r-cran-cli (3.6.2-1) ... 185s Setting up gfortran (4:13.2.0-7ubuntu1) ... 185s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 185s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 185s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 185s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 185s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 185s Setting up r-cran-bitops (1.0-7-1) ... 185s Setting up r-bioc-biocversion (3.18.1-1) ... 185s Setting up r-cran-bit64 (4.0.5-1) ... 185s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 185s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 185s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 185s Setting up r-cran-deldir (2.0-4-1) ... 185s Setting up r-cran-askpass (1.2.0-1) ... 185s Setting up r-cran-fastmap (1.1.1-1) ... 185s Setting up r-cran-png (0.1-8-1) ... 185s Setting up r-bioc-biobase (2.62.0-1) ... 185s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 185s Setting up r-cran-rstudioapi (0.15.0-1) ... 185s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 185s Setting up r-cran-utf8 (1.2.4-1) ... 185s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 185s Setting up r-cran-stringi (1.8.3-1) ... 185s Setting up texlive-latex-base (2023.20240207-1) ... 185s Setting up r-cran-hwriter (1.3.2.1-1) ... 185s Setting up r-cran-cpp11 (0.4.7-1) ... 185s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 185s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 185s Setting up r-cran-isoband (0.2.7-1) ... 185s Setting up r-cran-runit (0.4.32-3) ... 185s Setting up r-cran-futile.logger (1.4.3-4build1) ... 185s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 185s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 185s Setting up r-cran-later (1.3.2+dfsg-1) ... 185s Setting up r-cran-matrix (1.6-5-1) ... 185s Setting up r-cran-tinytex (0.49-1) ... 185s Setting up r-cran-knitr (1.45+dfsg-1) ... 185s Setting up r-cran-mgcv (1.9-1-1) ... 185s Setting up g++ (4:13.2.0-7ubuntu1) ... 185s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 185s Setting up r-cran-cachem (1.0.8-1) ... 185s Setting up build-essential (12.10ubuntu1) ... 185s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 185s Setting up r-bioc-iranges (2.36.0-1) ... 185s Setting up r-cran-rjson (0.2.21-1) ... 185s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 185s Setting up r-cran-restfulr (0.0.15-1) ... 185s Setting up r-cran-vctrs (0.6.5-1) ... 185s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 185s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 185s Setting up r-cran-ellipsis (0.3.2-2) ... 185s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 185s Setting up r-base-dev (4.3.3-2build1) ... 185s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 185s Setting up r-cran-stringr (1.5.1-1) ... 185s Setting up r-bioc-biocparallel (1.36.0-1) ... 185s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 185s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 185s Setting up r-cran-xml2 (1.3.6-1) ... 185s Setting up r-cran-munsell (0.5.0-2build1) ... 185s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 185s Setting up r-cran-survival (3.5-8-1) ... 185s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 185s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 185s Setting up texlive-bibtex-extra (2023.20240207-1) ... 185s Setting up r-cran-interp (1.1-6-1) ... 185s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 185s Setting up r-cran-httr (1.4.7+dfsg-1) ... 185s Setting up r-cran-gridextra (2.3-3build1) ... 185s Setting up r-cran-hms (1.1.3-1) ... 185s Setting up r-cran-scales (1.3.0-1) ... 185s Setting up r-cran-memoise (2.0.1-1) ... 185s Setting up r-cran-promises (1.2.1+dfsg-1) ... 185s Setting up r-cran-purrr (1.0.2-1) ... 185s Setting up r-cran-blob (1.2.4-1) ... 185s Setting up r-cran-htmltools (0.5.7-1) ... 185s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 185s Setting up r-bioc-xvector (0.42.0-1) ... 185s Setting up r-cran-sass (0.4.8+dfsg-1) ... 185s Setting up r-cran-dplyr (1.1.4-1) ... 185s Setting up r-cran-rsqlite (2.3.4-1) ... 185s Setting up r-cran-progress (1.2.3-1) ... 185s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 185s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 185s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 185s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 185s Setting up r-cran-rpart (4.1.23-1) ... 185s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 185s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 185s Setting up r-cran-fontawesome (0.5.2-1) ... 185s Setting up r-cran-latticeextra (0.6-30-1) ... 185s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 185s Setting up r-cran-viridis (0.6.5-1) ... 185s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 185s Setting up r-cran-tidyr (1.3.1-1) ... 185s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 185s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 185s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 185s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 185s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 185s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 185s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 185s Setting up r-bioc-annotationdbi (1.64.1-1) ... 185s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 185s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 185s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 185s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 185s Setting up r-bioc-genefilter (1.84.0-1) ... 185s Setting up r-bioc-genomicalignments (1.38.2-1) ... 185s Setting up r-bioc-geneplotter (1.80.0+dfsg-1) ... 185s Setting up r-cran-bookdown (0.37+dfsg-1) ... 185s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 185s Setting up r-bioc-rtracklayer (1.62.0-1) ... 185s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 185s Setting up r-bioc-dexseq (1.48.0+dfsg-1) ... 185s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 185s Setting up r-bioc-bsgenome (1.70.2-1) ... 185s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 185s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 185s Setting up r-cran-dt (0.31+dfsg-1) ... 185s Setting up r-bioc-variantannotation (1.48.1-1) ... 185s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 185s Setting up r-cran-htmltable (2.4.2-1) ... 185s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 185s Setting up r-cran-hmisc (5.1-1-1) ... 185s Setting up r-bioc-biovizbase (1.50.0-1) ... 185s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 185s Setting up autopkgtest-satdep (0) ... 185s Processing triggers for man-db (2.12.0-3) ... 186s Processing triggers for install-info (7.1-3) ... 186s Processing triggers for libc-bin (2.39-0ubuntu2) ... 186s Processing triggers for tex-common (6.18) ... 187s Running updmap-sys. This may take some time... done. 187s Running mktexlsr /var/lib/texmf ... done. 187s Building format(s) --all. 223s This may take some time... done. 239s (Reading database ... 129631 files and directories currently installed.) 239s Removing autopkgtest-satdep (0) ... 239s autopkgtest [17:35:42]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 239s autopkgtest [17:35:42]: test pkg-r-autopkgtest: [----------------------- 240s Test: Try to load the R library GenomicRanges 241s 241s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 241s Copyright (C) 2024 The R Foundation for Statistical Computing 241s Platform: aarch64-unknown-linux-gnu (64-bit) 241s 241s R is free software and comes with ABSOLUTELY NO WARRANTY. 241s You are welcome to redistribute it under certain conditions. 241s Type 'license()' or 'licence()' for distribution details. 241s 241s R is a collaborative project with many contributors. 241s Type 'contributors()' for more information and 241s 'citation()' on how to cite R or R packages in publications. 241s 241s Type 'demo()' for some demos, 'help()' for on-line help, or 241s 'help.start()' for an HTML browser interface to help. 241s Type 'q()' to quit R. 241s 241s > library('GenomicRanges') 241s Loading required package: stats4 241s Loading required package: BiocGenerics 241s 241s Attaching package: ‘BiocGenerics’ 241s 241s The following objects are masked from ‘package:stats’: 241s 241s IQR, mad, sd, var, xtabs 241s 241s The following objects are masked from ‘package:base’: 241s 241s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 241s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 241s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 241s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 241s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 241s table, tapply, union, unique, unsplit, which.max, which.min 241s 241s Loading required package: S4Vectors 242s 242s Attaching package: ‘S4Vectors’ 242s 242s The following object is masked from ‘package:utils’: 242s 242s findMatches 242s 242s The following objects are masked from ‘package:base’: 242s 242s expand.grid, I, unname 242s 242s Loading required package: IRanges 242s Loading required package: GenomeInfoDb 243s > 243s > 243s Other tests are currently unsupported! 243s They will be progressively added. 243s autopkgtest [17:35:46]: test pkg-r-autopkgtest: -----------------------] 244s pkg-r-autopkgtest PASS 244s autopkgtest [17:35:47]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 244s autopkgtest [17:35:47]: @@@@@@@@@@@@@@@@@@@@ summary 244s pkg-r-autopkgtest PASS 262s Creating nova instance adt-noble-arm64-r-bioc-genomicranges-20240316-173143-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...