0s autopkgtest [17:31:37]: starting date and time: 2024-03-16 17:31:37+0000 1s autopkgtest [17:31:38]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 1s autopkgtest [17:31:38]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3gf9s2_i/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-genomicfiles --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-10.secgroup --name adt-noble-arm64-r-bioc-genomicfiles-20240316-173137-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 76s autopkgtest [17:32:53]: testbed dpkg architecture: arm64 76s autopkgtest [17:32:53]: testbed apt version: 2.7.12 76s autopkgtest [17:32:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 76s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 77s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 77s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 77s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 77s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 77s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 77s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 77s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 77s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 77s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 77s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 77s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 77s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 79s Fetched 9060 kB in 2s (5197 kB/s) 79s Reading package lists... 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 84s Calculating upgrade... 84s The following packages will be REMOVED: 84s libglib2.0-0 libssl3 84s The following NEW packages will be installed: 84s libglib2.0-0t64 libssl3t64 xdg-user-dirs 84s The following packages have been kept back: 84s curl 84s The following packages will be upgraded: 84s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 84s ubuntu-minimal ubuntu-standard 84s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 84s Need to get 4613 kB of archives. 84s After this operation, 211 kB of additional disk space will be used. 84s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 85s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 85s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 86s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 86s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 86s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 86s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 86s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 86s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 86s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 87s Fetched 4613 kB in 2s (2102 kB/s) 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 87s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 87s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 87s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 87s udisks2 depends on libglib2.0-0 (>= 2.77.0). 87s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 87s python3-gi depends on libglib2.0-0 (>= 2.77.0). 87s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 87s netplan.io depends on libglib2.0-0 (>= 2.70.0). 87s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 87s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 87s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 87s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 87s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 87s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 87s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 87s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 87s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 87s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 87s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 87s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 87s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 87s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 87s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 87s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 87s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 87s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 87s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 87s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 87s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 87s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 87s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 87s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 87s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 87s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 87s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 87s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 87s fwupd depends on libglib2.0-0 (>= 2.79.0). 87s bolt depends on libglib2.0-0 (>= 2.56.0). 87s 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 87s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 87s Selecting previously unselected package libglib2.0-0t64:arm64. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 87s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 87s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 87s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 87s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 88s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 88s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 88s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 88s wget depends on libssl3 (>= 3.0.0). 88s u-boot-tools depends on libssl3 (>= 3.0.0). 88s tnftp depends on libssl3 (>= 3.0.0). 88s tcpdump depends on libssl3 (>= 3.0.0). 88s systemd-resolved depends on libssl3 (>= 3.0.0). 88s systemd depends on libssl3 (>= 3.0.0). 88s sudo depends on libssl3 (>= 3.0.0). 88s sbsigntool depends on libssl3 (>= 3.0.0). 88s rsync depends on libssl3 (>= 3.0.0). 88s python3-cryptography depends on libssl3 (>= 3.0.0). 88s openssh-server depends on libssl3 (>= 3.0.10). 88s openssh-client depends on libssl3 (>= 3.0.10). 88s mtd-utils depends on libssl3 (>= 3.0.0). 88s mokutil depends on libssl3 (>= 3.0.0). 88s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 88s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 88s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 88s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 88s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 88s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 88s libnvme1 depends on libssl3 (>= 3.0.0). 88s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 88s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 88s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 88s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 88s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 88s kmod depends on libssl3 (>= 3.0.0). 88s dhcpcd-base depends on libssl3 (>= 3.0.0). 88s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 88s 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 88s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 88s Selecting previously unselected package libssl3t64:arm64. 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 88s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 88s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 88s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 88s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 88s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 88s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 88s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 88s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 88s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 88s Unpacking ubuntu-minimal (1.536) over (1.535) ... 88s Selecting previously unselected package xdg-user-dirs. 88s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 88s Unpacking xdg-user-dirs (0.18-1) ... 88s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 88s Unpacking ubuntu-standard (1.536) over (1.535) ... 88s Setting up ubuntu-minimal (1.536) ... 88s Setting up xdg-user-dirs (0.18-1) ... 88s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 88s Setting up libtirpc-common (1.3.4+ds-1.1) ... 88s Setting up ubuntu-standard (1.536) ... 88s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 88s No schema files found: doing nothing. 88s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 88s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 88s Setting up openssl (3.0.13-0ubuntu1) ... 88s Setting up readline-common (8.2-3.1) ... 88s Processing triggers for man-db (2.12.0-3) ... 90s Processing triggers for install-info (7.1-3) ... 90s Processing triggers for libc-bin (2.39-0ubuntu2) ... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 93s sh: Attempting to set up Debian/Ubuntu apt sources automatically 93s sh: Distribution appears to be Ubuntu 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s eatmydata is already the newest version (131-1). 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s dbus is already the newest version (1.14.10-4ubuntu1). 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 97s rng-tools-debian is already the newest version (2.4). 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 98s The following packages will be REMOVED: 98s cloud-init* python3-configobj* python3-debconf* 98s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 98s After this operation, 3252 kB disk space will be freed. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 98s Removing cloud-init (24.1.1-0ubuntu1) ... 99s Removing python3-configobj (5.0.8-3) ... 99s Removing python3-debconf (1.5.86) ... 100s Processing triggers for man-db (2.12.0-3) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 100s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 101s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 101s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 101s invoke-rc.d: policy-rc.d denied execution of try-restart. 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s linux-generic is already the newest version (6.8.0-11.11+1). 102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 102s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 102s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 105s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s Calculating upgrade... 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s autopkgtest [17:33:26]: rebooting testbed after setup commands that affected boot 143s autopkgtest [17:34:00]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 146s autopkgtest [17:34:03]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicfiles 149s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (dsc) [2416 B] 149s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (tar) [291 kB] 149s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (diff) [5272 B] 149s gpgv: Signature made Fri Dec 1 10:41:34 2023 UTC 149s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 149s gpgv: issuer "tillea@rki.de" 149s gpgv: Can't check signature: No public key 149s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfiles_1.38.0+dfsg-1.dsc: no acceptable signature found 150s autopkgtest [17:34:07]: testing package r-bioc-genomicfiles version 1.38.0+dfsg-1 150s autopkgtest [17:34:07]: build not needed 151s autopkgtest [17:34:08]: test pkg-r-autopkgtest: preparing testbed 152s Reading package lists... 153s Building dependency tree... 153s Reading state information... 153s Starting pkgProblemResolver with broken count: 0 153s Starting 2 pkgProblemResolver with broken count: 0 153s Done 154s The following additional packages will be installed: 154s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 154s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 154s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 154s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 154s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 154s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 154s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 154s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 154s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 154s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 154s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 154s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 154s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 154s libjs-highlight.js libjs-jquery libjs-jquery-datatables 154s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 154s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 154s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 154s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 154s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 154s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 154s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 154s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 154s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 154s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 154s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 154s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev 154s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 154s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 154s r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache 154s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 154s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 154s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 154s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicfiles 154s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 154s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 154s r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 154s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 154s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 154s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 154s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 154s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 154s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 154s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 154s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 154s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 154s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 154s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 154s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 154s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 154s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 154s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 154s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 154s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 154s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 154s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 154s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 154s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 154s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 154s Suggested packages: 154s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 154s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 154s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 154s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 154s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 154s libboost-context1.83-dev libboost-contract1.83-dev 154s libboost-coroutine1.83-dev libboost-date-time1.83-dev 154s libboost-exception1.83-dev libboost-fiber1.83-dev 154s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 154s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 154s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 154s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 154s libboost-numpy1.83-dev libboost-program-options1.83-dev 154s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 154s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 154s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 154s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 154s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 154s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 154s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 154s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 154s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 154s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 154s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 154s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 154s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 154s r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel 154s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 154s r-cran-webmockr r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats 154s r-cran-class r-cran-rcolorbrewer r-cran-r.utils r-bioc-edger 154s r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz 154s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 154s r-cran-hexbin r-bioc-rhdf5 r-cran-ggplot2 r-cran-roxygen2 r-cran-ff 154s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-getopt 154s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 154s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 154s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 154s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 154s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 154s hintview texlive-latex-base-doc wp2latex 154s Recommended packages: 154s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 154s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 154s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 154s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 154s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 154s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 154s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 154s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 154s r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-waldo r-cran-cairo 154s r-cran-markdown r-cran-ragg r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf 154s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 154s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 154s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 154s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 154s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 154s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 154s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 154s The following NEW packages will be installed: 154s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 154s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 154s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 154s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 154s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 154s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 154s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 154s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 154s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 154s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 154s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 154s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 154s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 154s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 154s libjs-highlight.js libjs-jquery libjs-jquery-datatables 154s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 154s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 154s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 154s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 154s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 154s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 154s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 154s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 154s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 154s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 154s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 154s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev 154s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 154s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 154s r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache 154s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 154s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 154s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 154s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicfiles 154s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 154s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 154s r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 154s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 154s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 154s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 154s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 154s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 154s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 154s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 154s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 154s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 154s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 154s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 154s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 154s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 154s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 154s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 154s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 154s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 154s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 154s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 154s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 154s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 154s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 154s 0 upgraded, 282 newly installed, 0 to remove and 0 not upgraded. 154s Need to get 442 MB/442 MB of archives. 154s After this operation, 1368 MB of additional disk space will be used. 154s Get:1 /tmp/autopkgtest.Bvne6b/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [772 B] 154s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 154s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 155s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 155s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 155s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 155s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 155s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 155s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 156s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 156s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 157s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 157s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 157s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 157s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 157s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 157s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 157s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 157s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 157s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 157s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 157s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 157s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 157s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 157s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 158s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 158s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 158s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 158s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 158s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 158s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 158s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 158s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 158s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 158s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 158s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 158s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 158s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 158s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 158s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 158s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 158s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 158s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 159s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 159s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 159s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 159s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 159s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 159s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 159s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 159s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 159s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 159s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 159s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 159s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 159s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 159s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 159s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 159s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 159s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 159s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 159s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 159s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 159s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 159s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 159s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 159s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 159s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 159s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 159s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 159s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 159s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 160s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 160s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 160s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 160s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 160s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 160s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 160s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 160s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 160s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 160s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 160s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 160s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 160s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 160s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 160s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 160s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 160s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 160s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 160s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 160s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 160s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 160s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 160s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 160s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 160s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 160s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 160s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 160s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 160s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 160s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 160s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 160s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 160s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 160s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 160s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 161s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 161s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 161s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 161s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 161s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 161s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 161s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 161s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 161s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 161s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 161s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 161s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 161s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 161s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 161s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 161s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 161s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 161s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 161s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 161s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 161s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 161s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 161s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 161s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 161s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 161s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 161s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 161s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 161s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 161s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 161s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 162s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 162s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 162s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 162s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 162s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 162s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 162s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 163s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 163s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 163s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 163s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 163s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 164s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 164s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 164s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 164s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 164s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 164s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 164s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 164s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 164s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 164s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 164s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 164s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 164s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 164s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 164s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 164s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 164s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 164s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 164s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 164s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 164s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 164s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 164s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 164s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 164s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 164s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 164s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 164s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 164s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 164s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 164s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 164s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 165s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 165s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 165s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 165s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 165s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 165s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 165s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 166s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 166s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 166s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 166s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 166s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 166s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 166s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 166s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 166s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 166s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 166s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 166s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 166s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 166s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 166s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 166s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 166s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 166s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 166s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 166s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 166s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 166s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 166s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 166s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 167s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 167s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 167s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 167s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 167s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 167s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 167s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 167s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 167s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 167s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 167s Get:224 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 167s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 167s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 167s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 167s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 167s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 167s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 167s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 167s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 167s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 167s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 167s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 167s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 167s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 167s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 167s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 167s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 167s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 167s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 167s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 167s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 167s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 167s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 167s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 167s Get:248 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 167s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 168s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 168s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 168s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 170s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 170s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 170s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 170s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 170s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 170s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 170s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 170s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 170s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 170s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 170s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 170s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 170s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 171s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 171s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 171s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 171s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 171s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 171s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 171s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 171s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 171s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 171s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 171s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 171s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 171s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 171s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 171s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfiles all 1.38.0+dfsg-1 [532 kB] 171s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-snpstats arm64 1.52.0+dfsg-1 [7236 kB] 172s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 173s Preconfiguring packages ... 174s Fetched 442 MB in 17s (25.3 MB/s) 174s Selecting previously unselected package libc-dev-bin. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 174s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 174s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 174s Selecting previously unselected package linux-libc-dev:arm64. 174s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 174s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 174s Selecting previously unselected package libcrypt-dev:arm64. 174s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 174s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 174s Selecting previously unselected package libtirpc-dev:arm64. 174s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 174s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 174s Selecting previously unselected package libnsl-dev:arm64. 174s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 174s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 174s Selecting previously unselected package rpcsvc-proto. 174s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 174s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 174s Selecting previously unselected package libc6-dev:arm64. 174s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 174s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 175s Selecting previously unselected package libisl23:arm64. 175s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 175s Unpacking libisl23:arm64 (0.26-3) ... 175s Selecting previously unselected package libmpc3:arm64. 175s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 175s Unpacking libmpc3:arm64 (1.3.1-1) ... 175s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 175s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 175s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 175s Selecting previously unselected package cpp-13. 175s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 175s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 175s Selecting previously unselected package cpp-aarch64-linux-gnu. 175s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 175s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Selecting previously unselected package cpp. 175s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 175s Unpacking cpp (4:13.2.0-7ubuntu1) ... 175s Selecting previously unselected package libcc1-0:arm64. 175s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 175s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 175s Selecting previously unselected package libgomp1:arm64. 175s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 175s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 175s Selecting previously unselected package libitm1:arm64. 175s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 175s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 175s Selecting previously unselected package libatomic1:arm64. 175s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 175s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 175s Selecting previously unselected package libasan8:arm64. 175s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 175s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 175s Selecting previously unselected package liblsan0:arm64. 175s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 175s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 175s Selecting previously unselected package libtsan2:arm64. 175s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 175s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 175s Selecting previously unselected package libubsan1:arm64. 175s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 175s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 175s Selecting previously unselected package libhwasan0:arm64. 175s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 175s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 175s Selecting previously unselected package libgcc-13-dev:arm64. 176s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 176s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 176s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 176s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 176s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 176s Selecting previously unselected package gcc-13. 176s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 176s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 176s Selecting previously unselected package gcc-aarch64-linux-gnu. 176s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 176s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 176s Selecting previously unselected package gcc. 176s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 176s Unpacking gcc (4:13.2.0-7ubuntu1) ... 176s Selecting previously unselected package libstdc++-13-dev:arm64. 176s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 176s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 176s Selecting previously unselected package g++-13-aarch64-linux-gnu. 176s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 176s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 177s Selecting previously unselected package g++-13. 177s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 177s Unpacking g++-13 (13.2.0-17ubuntu2) ... 177s Selecting previously unselected package g++-aarch64-linux-gnu. 177s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 177s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 177s Selecting previously unselected package g++. 177s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 177s Unpacking g++ (4:13.2.0-7ubuntu1) ... 177s Selecting previously unselected package build-essential. 177s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 177s Unpacking build-essential (12.10ubuntu1) ... 177s Selecting previously unselected package dctrl-tools. 177s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 177s Unpacking dctrl-tools (2.24-3build2) ... 177s Selecting previously unselected package fonts-dejavu-mono. 177s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 177s Unpacking fonts-dejavu-mono (2.37-8) ... 177s Selecting previously unselected package fonts-dejavu-core. 177s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 177s Unpacking fonts-dejavu-core (2.37-8) ... 177s Selecting previously unselected package fontconfig-config. 177s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 177s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 177s Selecting previously unselected package libfontconfig1:arm64. 177s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 177s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 177s Selecting previously unselected package fontconfig. 177s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 177s Unpacking fontconfig (2.15.0-1ubuntu1) ... 177s Selecting previously unselected package fonts-font-awesome. 177s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 177s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 177s Selecting previously unselected package fonts-glyphicons-halflings. 177s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 177s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 177s Selecting previously unselected package fonts-lmodern. 177s Preparing to unpack .../041-fonts-lmodern_2.005-1_all.deb ... 177s Unpacking fonts-lmodern (2.005-1) ... 177s Selecting previously unselected package fonts-mathjax. 177s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 177s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 178s Selecting previously unselected package libgfortran5:arm64. 178s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 178s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 178s Selecting previously unselected package libgfortran-13-dev:arm64. 178s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 178s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 178s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 178s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 178s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 178s Selecting previously unselected package gfortran-13. 178s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 178s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 178s Selecting previously unselected package gfortran-aarch64-linux-gnu. 178s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 178s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 178s Selecting previously unselected package gfortran. 178s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 178s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 178s Selecting previously unselected package icu-devtools. 178s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_arm64.deb ... 178s Unpacking icu-devtools (74.2-1ubuntu1) ... 178s Selecting previously unselected package javascript-common. 178s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 178s Unpacking javascript-common (11+nmu1) ... 178s Selecting previously unselected package libio-string-perl. 178s Preparing to unpack .../051-libio-string-perl_1.08-4_all.deb ... 178s Unpacking libio-string-perl (1.08-4) ... 178s Selecting previously unselected package liblatex-tounicode-perl. 178s Preparing to unpack .../052-liblatex-tounicode-perl_0.54-2_all.deb ... 178s Unpacking liblatex-tounicode-perl (0.54-2) ... 178s Selecting previously unselected package libbibtex-parser-perl. 178s Preparing to unpack .../053-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 178s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 178s Selecting previously unselected package libblas3:arm64. 178s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 178s Unpacking libblas3:arm64 (3.12.0-3) ... 178s Selecting previously unselected package libblas-dev:arm64. 178s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 178s Unpacking libblas-dev:arm64 (3.12.0-3) ... 178s Selecting previously unselected package libboost1.83-dev:arm64. 178s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 178s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 180s Selecting previously unselected package libboost-dev:arm64. 180s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 180s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 180s Selecting previously unselected package libbz2-dev:arm64. 180s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 180s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 180s Selecting previously unselected package libpixman-1-0:arm64. 180s Preparing to unpack .../059-libpixman-1-0_0.42.2-1_arm64.deb ... 180s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 181s Selecting previously unselected package libxcb-render0:arm64. 181s Preparing to unpack .../060-libxcb-render0_1.15-1_arm64.deb ... 181s Unpacking libxcb-render0:arm64 (1.15-1) ... 181s Selecting previously unselected package libxcb-shm0:arm64. 181s Preparing to unpack .../061-libxcb-shm0_1.15-1_arm64.deb ... 181s Unpacking libxcb-shm0:arm64 (1.15-1) ... 181s Selecting previously unselected package libxrender1:arm64. 181s Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 181s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 181s Selecting previously unselected package libcairo2:arm64. 181s Preparing to unpack .../063-libcairo2_1.18.0-1_arm64.deb ... 181s Unpacking libcairo2:arm64 (1.18.0-1) ... 181s Selecting previously unselected package libdatrie1:arm64. 181s Preparing to unpack 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unselected package libjpeg-dev:arm64. 182s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 182s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 182s Selecting previously unselected package libjs-bootstrap. 182s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 182s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 182s Selecting previously unselected package libjs-popper.js. 182s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 182s Unpacking libjs-popper.js (1.16.1+ds-6) ... 182s Selecting previously unselected package libjs-bootstrap4. 182s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 182s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 182s Selecting previously unselected package libjs-d3. 182s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 182s Unpacking libjs-d3 (3.5.17-4) ... 182s Selecting previously unselected package libjs-es5-shim. 182s Preparing to unpack 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Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 184s Selecting previously unselected package libtcl8.6:arm64. 185s Preparing to unpack .../117-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 185s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 185s Selecting previously unselected package libteckit0:arm64. 185s Preparing to unpack .../118-libteckit0_2.5.12+ds1-1_arm64.deb ... 185s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 185s Selecting previously unselected package libtexlua53-5:arm64. 186s Preparing to unpack .../119-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 186s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 186s Selecting previously unselected package libjbig0:arm64. 186s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 186s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 186s Selecting previously unselected package libwebp7:arm64. 186s Preparing to unpack .../121-libwebp7_1.3.2-0.4_arm64.deb ... 186s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 186s Selecting previously unselected package libtiff6:arm64. 186s Preparing to unpack .../122-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 186s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 186s Selecting previously unselected package libxft2:arm64. 186s Preparing to unpack .../123-libxft2_2.3.6-1_arm64.deb ... 186s Unpacking libxft2:arm64 (2.3.6-1) ... 186s Selecting previously unselected package libxss1:arm64. 186s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build2_arm64.deb ... 186s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 186s Selecting previously unselected package libtk8.6:arm64. 186s Preparing to unpack .../125-libtk8.6_8.6.13-2_arm64.deb ... 186s Unpacking libtk8.6:arm64 (8.6.13-2) ... 186s Selecting previously unselected package libxt6:arm64. 186s Preparing to unpack .../126-libxt6_1%3a1.2.1-1.1_arm64.deb ... 186s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 186s Selecting previously unselected package libxmu6:arm64. 186s Preparing to unpack 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unselected package r-bioc-iranges. 189s Preparing to unpack .../150-r-bioc-iranges_2.36.0-1_arm64.deb ... 189s Unpacking r-bioc-iranges (2.36.0-1) ... 189s Selecting previously unselected package r-cran-dbi. 189s Preparing to unpack .../151-r-cran-dbi_1.2.2-1_all.deb ... 189s Unpacking r-cran-dbi (1.2.2-1) ... 189s Selecting previously unselected package r-cran-bit. 189s Preparing to unpack .../152-r-cran-bit_4.0.5-1_arm64.deb ... 189s Unpacking r-cran-bit (4.0.5-1) ... 189s Selecting previously unselected package r-cran-bit64. 189s Preparing to unpack .../153-r-cran-bit64_4.0.5-1_arm64.deb ... 189s Unpacking r-cran-bit64 (4.0.5-1) ... 189s Selecting previously unselected package r-cran-rlang. 189s Preparing to unpack .../154-r-cran-rlang_1.1.3-1_arm64.deb ... 189s Unpacking r-cran-rlang (1.1.3-1) ... 189s Selecting previously unselected package r-cran-cli. 189s Preparing to unpack .../155-r-cran-cli_3.6.2-1_arm64.deb ... 189s Unpacking r-cran-cli (3.6.2-1) ... 189s Selecting previously unselected package r-cran-glue. 189s Preparing to unpack .../156-r-cran-glue_1.7.0-1_arm64.deb ... 189s Unpacking r-cran-glue (1.7.0-1) ... 189s Selecting previously unselected package r-cran-lifecycle. 189s Preparing to unpack .../157-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 189s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 189s Selecting previously unselected package r-cran-vctrs. 189s Preparing to unpack .../158-r-cran-vctrs_0.6.5-1_arm64.deb ... 189s Unpacking r-cran-vctrs (0.6.5-1) ... 189s Selecting previously unselected package r-cran-blob. 189s Preparing to unpack .../159-r-cran-blob_1.2.4-1_all.deb ... 189s Unpacking r-cran-blob (1.2.4-1) ... 189s Selecting previously unselected package r-cran-fastmap. 189s Preparing to unpack .../160-r-cran-fastmap_1.1.1-1_arm64.deb ... 189s Unpacking r-cran-fastmap (1.1.1-1) ... 189s Selecting previously unselected package r-cran-cachem. 189s Preparing to unpack .../161-r-cran-cachem_1.0.8-1_arm64.deb ... 189s Unpacking r-cran-cachem (1.0.8-1) ... 189s Selecting previously unselected package r-cran-memoise. 189s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ... 189s Unpacking r-cran-memoise (2.0.1-1) ... 189s Selecting previously unselected package r-cran-pkgconfig. 189s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 189s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 189s Selecting previously unselected package r-cran-plogr. 189s Preparing to unpack .../164-r-cran-plogr_0.2.0-3build1_all.deb ... 189s Unpacking r-cran-plogr (0.2.0-3build1) ... 189s Selecting previously unselected package r-cran-cpp11. 189s Preparing to unpack .../165-r-cran-cpp11_0.4.7-1_all.deb ... 189s Unpacking r-cran-cpp11 (0.4.7-1) ... 189s Selecting previously unselected package r-cran-rsqlite. 189s Preparing to unpack .../166-r-cran-rsqlite_2.3.4-1_arm64.deb ... 189s Unpacking r-cran-rsqlite (2.3.4-1) ... 189s Selecting previously unselected package r-cran-curl. 189s Preparing to unpack .../167-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 189s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 189s Selecting previously unselected package r-cran-jsonlite. 189s Preparing to unpack .../168-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 189s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 190s Selecting previously unselected package r-cran-mime. 190s Preparing to unpack .../169-r-cran-mime_0.12-1_arm64.deb ... 190s Unpacking r-cran-mime (0.12-1) ... 190s Selecting previously unselected package r-cran-sys. 190s Preparing to unpack .../170-r-cran-sys_3.4.2-1_arm64.deb ... 190s Unpacking r-cran-sys (3.4.2-1) ... 190s Selecting previously unselected package r-cran-askpass. 190s Preparing to unpack .../171-r-cran-askpass_1.2.0-1_arm64.deb ... 190s Unpacking r-cran-askpass (1.2.0-1) ... 190s Selecting previously unselected package r-cran-openssl. 190s Preparing to unpack .../172-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 190s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 190s Selecting previously unselected package r-cran-r6. 190s Preparing to unpack .../173-r-cran-r6_2.5.1-1_all.deb ... 190s Unpacking r-cran-r6 (2.5.1-1) ... 190s Selecting previously unselected package r-cran-httr. 190s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ... 190s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 190s Selecting previously unselected package r-cran-png. 190s Preparing to unpack .../175-r-cran-png_0.1-8-1_arm64.deb ... 190s Unpacking r-cran-png (0.1-8-1) ... 190s Selecting previously unselected package r-bioc-zlibbioc. 190s Preparing to unpack .../176-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 190s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-xvector. 190s Preparing to unpack .../177-r-bioc-xvector_0.42.0-1_arm64.deb ... 190s Unpacking r-bioc-xvector (0.42.0-1) ... 190s Selecting previously unselected package r-cran-bitops. 190s Preparing to unpack .../178-r-cran-bitops_1.0-7-1_arm64.deb ... 190s Unpacking r-cran-bitops (1.0-7-1) ... 190s Selecting previously unselected package r-cran-rcurl. 190s Preparing to unpack .../179-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 190s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 190s Selecting previously unselected package r-bioc-genomeinfodbdata. 190s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 190s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 190s Selecting previously unselected package r-bioc-genomeinfodb. 190s Preparing to unpack .../181-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 190s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 190s Selecting previously unselected package r-cran-crayon. 190s Preparing to unpack .../182-r-cran-crayon_1.5.2-1_all.deb ... 190s Unpacking r-cran-crayon (1.5.2-1) ... 191s Selecting previously unselected package r-bioc-biostrings. 191s Preparing to unpack .../183-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 191s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 191s Selecting previously unselected package r-bioc-keggrest. 191s Preparing to unpack .../184-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 191s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 191s Selecting previously unselected package r-bioc-annotationdbi. 191s Preparing to unpack .../185-r-bioc-annotationdbi_1.64.1-1_all.deb ... 191s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 191s Selecting previously unselected package r-cran-xml. 191s Preparing to unpack .../186-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 191s Unpacking r-cran-xml (3.99-0.16.1-1) ... 191s Selecting previously unselected package r-cran-xtable. 191s Preparing to unpack .../187-r-cran-xtable_1%3a1.8-4-2_all.deb ... 191s Unpacking r-cran-xtable (1:1.8-4-2) ... 191s Selecting previously unselected package r-bioc-annotate. 191s Preparing to unpack .../188-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 191s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 191s Selecting previously unselected package r-cran-generics. 191s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 191s Unpacking r-cran-generics (0.1.3-1) ... 191s Selecting previously unselected package r-cran-magrittr. 191s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_arm64.deb ... 191s Unpacking r-cran-magrittr (2.0.3-1) ... 191s Selecting previously unselected package r-cran-fansi. 191s Preparing to unpack .../191-r-cran-fansi_1.0.5-1_arm64.deb ... 191s Unpacking r-cran-fansi (1.0.5-1) ... 191s Selecting previously unselected package r-cran-utf8. 191s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_arm64.deb ... 191s Unpacking r-cran-utf8 (1.2.4-1) ... 191s Selecting previously unselected package r-cran-pillar. 191s Preparing to unpack .../193-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 191s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 191s Selecting previously unselected package r-cran-tibble. 192s Preparing to unpack .../194-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 192s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 192s Selecting previously unselected package r-cran-withr. 192s Preparing to unpack .../195-r-cran-withr_2.5.0-1_all.deb ... 192s Unpacking r-cran-withr (2.5.0-1) ... 192s Selecting previously unselected package r-cran-tidyselect. 192s Preparing to unpack .../196-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 192s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 192s Selecting previously unselected package r-cran-dplyr. 192s Preparing to unpack .../197-r-cran-dplyr_1.1.4-1_arm64.deb ... 192s Unpacking r-cran-dplyr (1.1.4-1) ... 192s Selecting previously unselected package r-cran-purrr. 192s Preparing to unpack .../198-r-cran-purrr_1.0.2-1_arm64.deb ... 192s Unpacking r-cran-purrr (1.0.2-1) ... 192s Selecting previously unselected package r-cran-stringi. 192s Preparing to unpack .../199-r-cran-stringi_1.8.3-1_arm64.deb ... 192s Unpacking r-cran-stringi (1.8.3-1) ... 192s Selecting previously unselected package r-cran-stringr. 192s Preparing to unpack .../200-r-cran-stringr_1.5.1-1_all.deb ... 192s Unpacking r-cran-stringr (1.5.1-1) ... 192s Selecting previously unselected package r-cran-tidyr. 192s Preparing to unpack .../201-r-cran-tidyr_1.3.1-1_arm64.deb ... 192s Unpacking r-cran-tidyr (1.3.1-1) ... 192s Selecting previously unselected package r-cran-dbplyr. 192s Preparing to unpack .../202-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 192s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 192s Selecting previously unselected package r-cran-filelock. 192s Preparing to unpack .../203-r-cran-filelock_1.0.3-1_arm64.deb ... 192s Unpacking r-cran-filelock (1.0.3-1) ... 192s Selecting previously unselected package r-bioc-biocfilecache. 192s Preparing to unpack .../204-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 192s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 192s Selecting previously unselected package r-bioc-biocio. 192s Preparing to unpack .../205-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 192s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 192s Selecting previously unselected package r-cran-formatr. 192s Preparing to unpack .../206-r-cran-formatr_1.14-1_all.deb ... 192s Unpacking r-cran-formatr (1.14-1) ... 192s Selecting previously unselected package r-cran-lambda.r. 192s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build1_all.deb ... 192s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 192s Selecting previously unselected package r-cran-futile.options. 192s Preparing to unpack .../208-r-cran-futile.options_1.0.1-3build1_all.deb ... 192s Unpacking r-cran-futile.options (1.0.1-3build1) ... 193s Selecting previously unselected package r-cran-futile.logger. 193s Preparing to unpack .../209-r-cran-futile.logger_1.4.3-4build1_all.deb ... 193s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 193s Selecting previously unselected package r-cran-snow. 193s Preparing to unpack .../210-r-cran-snow_1%3a0.4.4-2_all.deb ... 193s Unpacking r-cran-snow (1:0.4.4-2) ... 193s Selecting previously unselected package r-cran-codetools. 193s Preparing to unpack .../211-r-cran-codetools_0.2-19-1_all.deb ... 193s Unpacking r-cran-codetools (0.2-19-1) ... 193s Selecting previously unselected package r-cran-bh. 193s Preparing to unpack .../212-r-cran-bh_1.84.0-1_all.deb ... 193s Unpacking r-cran-bh (1.84.0-1) ... 193s Selecting previously unselected package r-bioc-biocparallel. 193s Preparing to unpack .../213-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 193s Unpacking r-bioc-biocparallel (1.36.0-1) ... 193s Selecting previously unselected package r-cran-base64enc. 193s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3_arm64.deb ... 193s Unpacking r-cran-base64enc (0.1-3-3) ... 193s Selecting previously unselected package r-cran-digest. 193s Preparing to unpack .../215-r-cran-digest_0.6.34-1_arm64.deb ... 193s Unpacking r-cran-digest (0.6.34-1) ... 193s Selecting previously unselected package r-cran-ellipsis. 193s Preparing to unpack .../216-r-cran-ellipsis_0.3.2-2_arm64.deb ... 193s Unpacking r-cran-ellipsis (0.3.2-2) ... 193s Selecting previously unselected package r-cran-htmltools. 193s Preparing to unpack .../217-r-cran-htmltools_0.5.7-1_arm64.deb ... 193s Unpacking r-cran-htmltools (0.5.7-1) ... 193s Selecting previously unselected package r-cran-evaluate. 193s Preparing to unpack .../218-r-cran-evaluate_0.23-1_all.deb ... 193s Unpacking r-cran-evaluate (0.23-1) ... 193s Selecting previously unselected package r-cran-xfun. 193s Preparing to unpack .../219-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 193s Unpacking r-cran-xfun (0.41+dfsg-1) ... 193s Selecting previously unselected package r-cran-highr. 193s Preparing to unpack .../220-r-cran-highr_0.10+dfsg-1_all.deb ... 193s Unpacking r-cran-highr (0.10+dfsg-1) ... 193s Selecting previously unselected package r-cran-yaml. 193s Preparing to unpack .../221-r-cran-yaml_2.3.8-1_arm64.deb ... 193s Unpacking r-cran-yaml (2.3.8-1) ... 193s Selecting previously unselected package libjs-mathjax. 193s Preparing to unpack .../222-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 193s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 194s Selecting previously unselected package r-cran-knitr. 194s Preparing to unpack .../223-r-cran-knitr_1.45+dfsg-1_all.deb ... 194s Unpacking r-cran-knitr (1.45+dfsg-1) ... 194s Selecting previously unselected package r-cran-jquerylib. 194s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 194s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 194s Selecting previously unselected package r-cran-fs. 194s Preparing to unpack .../225-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 194s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 194s Selecting previously unselected package r-cran-rappdirs. 194s Preparing to unpack .../226-r-cran-rappdirs_0.3.3-1_arm64.deb ... 194s Unpacking r-cran-rappdirs (0.3.3-1) ... 194s Selecting previously unselected package r-cran-sass. 194s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 194s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 194s Selecting previously unselected package r-cran-bslib. 194s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 194s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 194s Selecting previously unselected package r-cran-fontawesome. 194s Preparing to unpack .../229-r-cran-fontawesome_0.5.2-1_all.deb ... 194s Unpacking r-cran-fontawesome (0.5.2-1) ... 194s Selecting previously unselected package r-cran-tinytex. 194s Preparing to unpack .../230-r-cran-tinytex_0.49-1_all.deb ... 194s Unpacking r-cran-tinytex (0.49-1) ... 194s Selecting previously unselected package libjs-modernizr. 194s Preparing to unpack .../231-libjs-modernizr_2.6.2+ds1-5_all.deb ... 194s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 194s Selecting previously unselected package r-cran-littler. 194s Preparing to unpack .../232-r-cran-littler_0.3.19-1_arm64.deb ... 194s Unpacking r-cran-littler (0.3.19-1) ... 195s Selecting previously unselected package r-cran-pkgkitten. 195s Preparing to unpack .../233-r-cran-pkgkitten_0.2.3-1_all.deb ... 195s Unpacking r-cran-pkgkitten (0.2.3-1) ... 195s Selecting previously unselected package r-cran-rcpp. 195s Preparing to unpack .../234-r-cran-rcpp_1.0.12-1_arm64.deb ... 195s Unpacking r-cran-rcpp (1.0.12-1) ... 195s Selecting previously unselected package r-cran-later. 195s Preparing to unpack .../235-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 195s Unpacking r-cran-later (1.3.2+dfsg-1) ... 195s Selecting previously unselected package r-cran-promises. 195s Preparing to unpack .../236-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 195s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 195s Selecting previously unselected package r-cran-httpuv. 195s Preparing to unpack .../237-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 195s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 195s Selecting previously unselected package r-cran-sourcetools. 195s Preparing to unpack .../238-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 195s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 195s Selecting previously unselected package r-cran-commonmark. 195s Preparing to unpack .../239-r-cran-commonmark_1.9.1-1_arm64.deb ... 195s Unpacking r-cran-commonmark (1.9.1-1) ... 195s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 195s Preparing to unpack .../240-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 195s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 195s Selecting previously unselected package r-cran-shiny. 195s Preparing to unpack .../241-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 195s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 195s Selecting previously unselected package r-cran-rmarkdown. 195s Preparing to unpack .../242-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 195s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 196s Selecting previously unselected package r-cran-bookdown. 196s Preparing to unpack .../243-r-cran-bookdown_0.37+dfsg-1_all.deb ... 196s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 196s Selecting previously unselected package r-cran-biocmanager. 196s Preparing to unpack .../244-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 196s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 196s Selecting previously unselected package tex-common. 196s Preparing to unpack .../245-tex-common_6.18_all.deb ... 196s Unpacking tex-common (6.18) ... 196s Selecting previously unselected package t1utils. 196s Preparing to unpack .../246-t1utils_1.41-4build2_arm64.deb ... 196s Unpacking t1utils (1.41-4build2) ... 196s Selecting previously unselected package texlive-binaries. 196s Preparing to unpack .../247-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 196s Unpacking texlive-binaries (2023.20230311.66589-9) ... 197s Selecting previously unselected package texlive-base. 197s Preparing to unpack .../248-texlive-base_2023.20240207-1_all.deb ... 197s Unpacking texlive-base (2023.20240207-1) ... 198s Selecting previously unselected package texlive-latex-base. 198s Preparing to unpack .../249-texlive-latex-base_2023.20240207-1_all.deb ... 198s Unpacking texlive-latex-base (2023.20240207-1) ... 198s Selecting previously unselected package texlive-bibtex-extra. 198s Preparing to unpack .../250-texlive-bibtex-extra_2023.20240207-1_all.deb ... 198s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 201s Selecting previously unselected package r-bioc-biocstyle. 201s Preparing to unpack .../251-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 201s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 201s Selecting previously unselected package r-cran-hms. 201s Preparing to unpack .../252-r-cran-hms_1.1.3-1_all.deb ... 201s Unpacking r-cran-hms (1.1.3-1) ... 201s Selecting previously unselected package r-cran-prettyunits. 202s Preparing to unpack .../253-r-cran-prettyunits_1.2.0-1_all.deb ... 202s Unpacking r-cran-prettyunits (1.2.0-1) ... 202s Selecting previously unselected package r-cran-progress. 202s Preparing to unpack .../254-r-cran-progress_1.2.3-1_all.deb ... 202s Unpacking r-cran-progress (1.2.3-1) ... 202s Selecting previously unselected package r-cran-xml2. 203s Preparing to unpack .../255-r-cran-xml2_1.3.6-1_arm64.deb ... 203s Unpacking r-cran-xml2 (1.3.6-1) ... 203s Selecting previously unselected package r-bioc-biomart. 203s Preparing to unpack .../256-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 203s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 203s Selecting previously unselected package r-bioc-genomicranges. 203s Preparing to unpack .../257-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 203s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 203s Selecting previously unselected package r-bioc-rhtslib. 203s Preparing to unpack .../258-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 203s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 203s Selecting previously unselected package r-bioc-rsamtools. 203s Preparing to unpack .../259-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 203s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 203s Selecting previously unselected package r-cran-matrixstats. 204s Preparing to unpack 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Setting up r-cran-stringr (1.5.1-1) ... 215s Setting up r-bioc-biocparallel (1.36.0-1) ... 215s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 215s Setting up r-cran-xml2 (1.3.6-1) ... 215s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 215s Setting up r-cran-survival (3.5-8-1) ... 215s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 215s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 215s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ... 215s Setting up texlive-bibtex-extra (2023.20240207-1) ... 215s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 215s Setting up r-cran-httr (1.4.7+dfsg-1) ... 215s Setting up r-cran-hms (1.1.3-1) ... 215s Setting up r-cran-memoise (2.0.1-1) ... 215s Setting up r-cran-promises (1.2.1+dfsg-1) ... 215s Setting up r-cran-purrr (1.0.2-1) ... 215s Setting up r-cran-blob (1.2.4-1) ... 215s Setting up r-cran-htmltools (0.5.7-1) ... 215s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 215s Setting up r-bioc-xvector (0.42.0-1) ... 215s Setting up r-cran-sass (0.4.8+dfsg-1) ... 215s Setting up r-cran-dplyr (1.1.4-1) ... 215s Setting up r-cran-rsqlite (2.3.4-1) ... 215s Setting up r-cran-progress (1.2.3-1) ... 215s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 215s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 215s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 215s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 215s Setting up r-cran-fontawesome (0.5.2-1) ... 215s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 215s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 215s Setting up r-cran-tidyr (1.3.1-1) ... 215s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 215s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 215s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 215s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 215s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 215s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 215s Setting up r-bioc-annotationdbi (1.64.1-1) ... 215s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 215s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 215s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 215s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 215s Setting up r-bioc-genefilter (1.84.0-1) ... 215s Setting up r-bioc-genomicalignments (1.38.2-1) ... 215s Setting up r-cran-bookdown (0.37+dfsg-1) ... 215s Setting up r-bioc-rtracklayer (1.62.0-1) ... 215s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 215s Setting up r-bioc-bsgenome (1.70.2-1) ... 215s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 215s Setting up r-bioc-variantannotation (1.48.1-1) ... 215s Setting up r-bioc-genomicfiles (1.38.0+dfsg-1) ... 215s Setting up autopkgtest-satdep (0) ... 215s Processing triggers for man-db (2.12.0-3) ... 217s Processing triggers for install-info (7.1-3) ... 217s Processing triggers for libc-bin (2.39-0ubuntu2) ... 217s Processing triggers for tex-common (6.18) ... 218s Running updmap-sys. This may take some time... done. 218s Running mktexlsr /var/lib/texmf ... done. 218s Building format(s) --all. 256s This may take some time... done. 270s (Reading database ... 124101 files and directories currently installed.) 270s Removing autopkgtest-satdep (0) ... 271s autopkgtest [17:36:08]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 271s autopkgtest [17:36:08]: test pkg-r-autopkgtest: [----------------------- 271s Test: Try to load the R library GenomicFiles 271s 271s R version 4.3.2 (2023-10-31) -- "Eye Holes" 271s Copyright (C) 2023 The R Foundation for Statistical Computing 271s Platform: aarch64-unknown-linux-gnu (64-bit) 271s 271s R is free software and comes with ABSOLUTELY NO WARRANTY. 271s You are welcome to redistribute it under certain conditions. 271s Type 'license()' or 'licence()' for distribution details. 271s 271s R is a collaborative project with many contributors. 271s Type 'contributors()' for more information and 271s 'citation()' on how to cite R or R packages in publications. 271s 271s Type 'demo()' for some demos, 'help()' for on-line help, or 271s 'help.start()' for an HTML browser interface to help. 271s Type 'q()' to quit R. 271s 272s > library('GenomicFiles') 272s Loading required package: BiocGenerics 272s 272s Attaching package: ‘BiocGenerics’ 272s 272s The following objects are masked from ‘package:stats’: 272s 272s IQR, mad, sd, var, xtabs 272s 272s The following objects are masked from ‘package:base’: 272s 272s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 272s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 272s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 272s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 272s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 272s table, tapply, union, unique, unsplit, which.max, which.min 272s 272s Loading required package: MatrixGenerics 272s Loading required package: matrixStats 272s 272s Attaching package: ‘MatrixGenerics’ 272s 272s The following objects are masked from ‘package:matrixStats’: 272s 272s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 272s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 272s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 272s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 272s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 272s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 272s colWeightedMeans, colWeightedMedians, colWeightedSds, 272s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 272s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 272s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 272s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 272s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 272s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 272s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 272s rowWeightedSds, rowWeightedVars 272s 272s Loading required package: GenomicRanges 272s Loading required package: stats4 272s Loading required package: S4Vectors 272s 272s Attaching package: ‘S4Vectors’ 272s 272s The following object is masked from ‘package:utils’: 272s 272s findMatches 272s 272s The following objects are masked from ‘package:base’: 272s 272s expand.grid, I, unname 272s 272s Loading required package: IRanges 273s Loading required package: GenomeInfoDb 274s Loading required package: SummarizedExperiment 274s Loading required package: Biobase 275s Welcome to Bioconductor 275s 275s Vignettes contain introductory material; view with 275s 'browseVignettes()'. To cite Bioconductor, see 275s 'citation("Biobase")', and for packages 'citation("pkgname")'. 275s 275s 275s Attaching package: ‘Biobase’ 275s 275s The following object is masked from ‘package:MatrixGenerics’: 275s 275s rowMedians 275s 275s The following objects are masked from ‘package:matrixStats’: 275s 275s anyMissing, rowMedians 275s 277s Loading required package: BiocParallel 277s Loading required package: Rsamtools 277s Loading required package: Biostrings 277s Loading required package: XVector 279s 279s Attaching package: ‘Biostrings’ 279s 279s The following object is masked from ‘package:base’: 279s 279s strsplit 279s 279s Loading required package: rtracklayer 284s > 284s > 285s Other tests are currently unsupported! 285s They will be progressively added. 286s autopkgtest [17:36:23]: test pkg-r-autopkgtest: -----------------------] 286s pkg-r-autopkgtest PASS 286s autopkgtest [17:36:23]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 286s autopkgtest [17:36:23]: @@@@@@@@@@@@@@@@@@@@ summary 286s pkg-r-autopkgtest PASS 290s Creating nova instance adt-noble-arm64-r-bioc-genomicfiles-20240316-173137-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...