0s autopkgtest [13:49:35]: starting date and time: 2024-03-16 13:49:35+0000 0s autopkgtest [13:49:35]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:49:35]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._ab1b69y/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-variantannotation,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-genomicfiles --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-16.secgroup --name adt-noble-arm64-r-bioc-genomicfiles-20240316-134935-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 75s autopkgtest [13:50:50]: testbed dpkg architecture: arm64 75s autopkgtest [13:50:50]: testbed apt version: 2.7.12 75s autopkgtest [13:50:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 76s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 76s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 77s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 77s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 77s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 77s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 77s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 77s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 77s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 77s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 77s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 77s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 77s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 79s Fetched 9092 kB in 2s (5135 kB/s) 79s Reading package lists... 82s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s Calculating upgrade... 84s The following packages will be REMOVED: 84s libssl3 84s The following NEW packages will be installed: 84s libssl3t64 84s The following packages have been kept back: 84s curl 84s The following packages will be upgraded: 84s openssl ubuntu-minimal ubuntu-standard 84s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 84s Need to get 2775 kB of archives. 84s After this operation, 72.7 kB of additional disk space will be used. 84s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 84s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 84s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 84s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 86s Fetched 2775 kB in 1s (4075 kB/s) 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 86s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 86s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 86s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 86s wget depends on libssl3 (>= 3.0.0). 86s u-boot-tools depends on libssl3 (>= 3.0.0). 86s tnftp depends on libssl3 (>= 3.0.0). 86s tcpdump depends on libssl3 (>= 3.0.0). 86s systemd-resolved depends on libssl3 (>= 3.0.0). 86s systemd depends on libssl3 (>= 3.0.0). 86s sudo depends on libssl3 (>= 3.0.0). 86s sbsigntool depends on libssl3 (>= 3.0.0). 86s rsync depends on libssl3 (>= 3.0.0). 86s python3-cryptography depends on libssl3 (>= 3.0.0). 86s openssh-server depends on libssl3 (>= 3.0.10). 86s openssh-client depends on libssl3 (>= 3.0.10). 86s mtd-utils depends on libssl3 (>= 3.0.0). 86s mokutil depends on libssl3 (>= 3.0.0). 86s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 86s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 86s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 86s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 86s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 86s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 86s libnvme1 depends on libssl3 (>= 3.0.0). 86s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 86s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 86s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 86s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 86s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 86s kmod depends on libssl3 (>= 3.0.0). 86s dhcpcd-base depends on libssl3 (>= 3.0.0). 86s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 86s 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 87s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 87s Selecting previously unselected package libssl3t64:arm64. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 87s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 87s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 87s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 87s Unpacking ubuntu-minimal (1.536) over (1.535) ... 87s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 87s Unpacking ubuntu-standard (1.536) over (1.535) ... 87s Setting up ubuntu-minimal (1.536) ... 87s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 87s Setting up ubuntu-standard (1.536) ... 87s Setting up openssl (3.0.13-0ubuntu1) ... 87s Processing triggers for man-db (2.12.0-3) ... 88s Processing triggers for libc-bin (2.39-0ubuntu2) ... 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 89s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 90s sh: Attempting to set up Debian/Ubuntu apt sources automatically 90s sh: Distribution appears to be Ubuntu 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s eatmydata is already the newest version (131-1). 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s dbus is already the newest version (1.14.10-4ubuntu1). 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s rng-tools-debian is already the newest version (2.4). 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s The following packages will be REMOVED: 95s cloud-init* python3-configobj* python3-debconf* 96s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 96s After this operation, 3252 kB disk space will be freed. 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 97s Removing cloud-init (24.1.1-0ubuntu1) ... 98s Removing python3-configobj (5.0.8-3) ... 98s Removing python3-debconf (1.5.86) ... 98s Processing triggers for man-db (2.12.0-3) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74371 files and directories currently installed.) 98s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 99s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 99s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 99s invoke-rc.d: policy-rc.d denied execution of try-restart. 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s linux-generic is already the newest version (6.8.0-11.11+1). 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 103s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 106s Reading package lists... 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s Calculating upgrade... 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s autopkgtest [13:51:23]: rebooting testbed after setup commands that affected boot 328s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 334s autopkgtest [13:55:09]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 337s autopkgtest [13:55:12]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicfiles 339s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (dsc) [2416 B] 339s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (tar) [291 kB] 339s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (diff) [5272 B] 340s gpgv: Signature made Fri Dec 1 10:41:34 2023 UTC 340s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 340s gpgv: issuer "tillea@rki.de" 340s gpgv: Can't check signature: No public key 340s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfiles_1.38.0+dfsg-1.dsc: no acceptable signature found 340s autopkgtest [13:55:15]: testing package r-bioc-genomicfiles version 1.38.0+dfsg-1 340s autopkgtest [13:55:15]: build not needed 341s autopkgtest [13:55:16]: test pkg-r-autopkgtest: preparing testbed 343s Reading package lists... 344s Building dependency tree... 344s Reading state information... 344s Starting pkgProblemResolver with broken count: 0 344s Starting 2 pkgProblemResolver with broken count: 0 344s Done 344s The following additional packages will be installed: 344s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 344s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 344s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 344s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 344s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 344s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 344s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 344s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 344s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 344s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 344s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 345s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 345s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 345s libjs-highlight.js libjs-jquery libjs-jquery-datatables 345s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 345s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 345s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 345s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 345s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 345s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 345s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 345s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 345s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 345s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 345s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 345s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev 345s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 345s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 345s r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache 345s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 345s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 345s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 345s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicfiles 345s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 345s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 345s r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 345s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 345s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 345s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 345s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 345s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 345s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 345s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 345s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 345s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 345s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 345s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 345s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 345s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 345s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 345s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 345s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 345s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 345s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 345s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 345s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 345s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 345s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 345s Suggested packages: 345s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 345s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 345s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 345s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 345s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 345s libboost-context1.83-dev libboost-contract1.83-dev 345s libboost-coroutine1.83-dev libboost-date-time1.83-dev 345s libboost-exception1.83-dev libboost-fiber1.83-dev 345s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 345s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 345s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 345s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 345s libboost-numpy1.83-dev libboost-program-options1.83-dev 345s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 345s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 345s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 345s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 345s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 345s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 345s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 345s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 345s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 345s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 345s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 345s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 345s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 345s r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel 345s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 345s r-cran-webmockr r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats 345s r-cran-class r-cran-rcolorbrewer r-cran-r.utils r-bioc-edger 345s r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz 345s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 345s r-cran-hexbin r-bioc-rhdf5 r-cran-ggplot2 r-cran-roxygen2 r-cran-ff 345s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-getopt 345s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 345s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 345s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 345s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 345s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 345s hintview texlive-latex-base-doc wp2latex 345s Recommended packages: 345s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 345s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 345s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 345s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 345s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 345s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 345s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 345s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 345s r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-waldo r-cran-cairo 345s r-cran-markdown r-cran-ragg r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf 345s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 345s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 345s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 345s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 345s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 345s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 345s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 345s The following NEW packages will be installed: 345s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 345s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 345s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 345s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 345s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 345s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 345s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 345s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 345s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 345s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 345s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 345s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 345s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 345s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 345s libjs-highlight.js libjs-jquery libjs-jquery-datatables 345s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 345s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 345s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 345s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 345s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 345s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 345s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 345s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 345s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 345s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 345s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 345s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev 345s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 345s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 345s r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache 345s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 345s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 345s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 345s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicfiles 345s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 345s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 345s r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 345s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 345s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 345s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 345s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 345s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 345s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 345s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 345s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 345s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 345s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 345s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 345s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 345s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 345s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 345s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 345s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 345s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 345s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 345s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 345s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 345s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 345s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 345s 0 upgraded, 282 newly installed, 0 to remove and 0 not upgraded. 345s Need to get 442 MB/442 MB of archives. 345s After this operation, 1368 MB of additional disk space will be used. 345s Get:1 /tmp/autopkgtest.TVjxl9/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [772 B] 345s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 345s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 345s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 345s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 345s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 345s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 345s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 346s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 346s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 346s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 346s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 346s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 346s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 346s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 346s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 346s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 346s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 346s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 346s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 346s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 346s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 346s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 346s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 346s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 347s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 347s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 347s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 347s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 347s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 347s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 347s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 347s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 347s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 347s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 347s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 347s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 347s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 347s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 347s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 347s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 347s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 347s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 347s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 347s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 347s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 347s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 347s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 347s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 347s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 347s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 347s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 347s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 347s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 347s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 347s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 348s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 348s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 348s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 348s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 348s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 348s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 348s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 348s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 348s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 348s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 348s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 348s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 348s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 348s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 348s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 348s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 348s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 348s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 348s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 348s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 348s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 348s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 348s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 348s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 348s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 348s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 348s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 348s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 348s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 348s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 348s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 348s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 348s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 348s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 348s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 348s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 348s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 348s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 348s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 349s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 349s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 349s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 349s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 349s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 349s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 349s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 349s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 349s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 349s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 349s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 349s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 349s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 349s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 349s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 349s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 349s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 349s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 349s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 349s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 349s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 349s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 349s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 349s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 349s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 349s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 349s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 349s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 349s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 349s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 349s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 349s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 349s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 349s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 349s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 349s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 349s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 349s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 349s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 349s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 349s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 349s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 349s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 350s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 350s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 350s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 350s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 350s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 350s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 350s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 351s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 351s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 351s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 351s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 351s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 351s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 351s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 351s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 351s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 351s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 351s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 351s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 351s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 351s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 351s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 351s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 351s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 351s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 351s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 351s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 351s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 351s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 351s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 351s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 351s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 351s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 351s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 351s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 351s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 351s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 351s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 351s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 351s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 351s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 351s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 351s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 351s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 352s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 352s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 352s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 352s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 352s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 352s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 352s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 352s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 352s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 352s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 352s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 352s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 352s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 352s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 352s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 352s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 352s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 352s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 352s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 352s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 352s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 352s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 353s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 353s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 353s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 353s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 353s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 353s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 353s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 353s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 353s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 353s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 353s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 353s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 353s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 353s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 353s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 353s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 353s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 353s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 353s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 353s Get:224 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 353s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 353s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 353s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 353s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 353s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 353s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 354s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 354s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 354s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 354s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 354s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 354s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 354s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 354s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 354s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 354s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 354s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 354s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 354s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 354s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 354s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 354s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 354s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 354s Get:248 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 354s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 354s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 355s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 355s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 358s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 358s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 358s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 358s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 358s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 358s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 358s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 358s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 358s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 358s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 358s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 358s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 358s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 358s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 358s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 358s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 358s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 358s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 358s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 358s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 358s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 358s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 359s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 359s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 359s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 359s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 359s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 359s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfiles all 1.38.0+dfsg-1 [532 kB] 359s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-snpstats arm64 1.52.0+dfsg-1 [7236 kB] 360s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 361s Preconfiguring packages ... 362s Fetched 442 MB in 15s (29.9 MB/s) 362s Selecting previously unselected package libc-dev-bin. 362s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74316 files and directories currently installed.) 362s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 362s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 362s Selecting previously unselected package linux-libc-dev:arm64. 362s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 362s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 362s Selecting previously unselected package libcrypt-dev:arm64. 362s Preparing to unpack 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(0.26-3) ... 362s Selecting previously unselected package libmpc3:arm64. 362s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 362s Unpacking libmpc3:arm64 (1.3.1-1) ... 362s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 362s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 362s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 363s Selecting previously unselected package cpp-13. 363s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 363s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 363s Selecting previously unselected package cpp-aarch64-linux-gnu. 363s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 363s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 363s Selecting previously unselected package cpp. 363s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 363s Unpacking cpp (4:13.2.0-7ubuntu1) ... 363s Selecting previously unselected package libcc1-0:arm64. 363s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 363s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 363s Selecting previously unselected package libgomp1:arm64. 363s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 363s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 363s Selecting previously unselected package libitm1:arm64. 363s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 363s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 363s Selecting previously unselected package libatomic1:arm64. 363s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 363s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 363s Selecting previously unselected package libasan8:arm64. 363s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 363s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 363s Selecting previously unselected package liblsan0:arm64. 363s 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unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 364s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 364s Selecting previously unselected package g++-13. 364s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 364s Unpacking g++-13 (13.2.0-17ubuntu2) ... 364s Selecting previously unselected package g++-aarch64-linux-gnu. 364s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 364s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 364s Selecting previously unselected package g++. 364s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 364s Unpacking g++ (4:13.2.0-7ubuntu1) ... 364s Selecting previously unselected package build-essential. 364s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 364s Unpacking build-essential (12.10ubuntu1) ... 365s Selecting previously unselected package dctrl-tools. 365s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 365s Unpacking dctrl-tools (2.24-3build2) ... 365s Selecting previously unselected package fonts-dejavu-mono. 365s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 365s Unpacking fonts-dejavu-mono (2.37-8) ... 365s Selecting previously unselected package fonts-dejavu-core. 365s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 365s Unpacking fonts-dejavu-core (2.37-8) ... 365s Selecting previously unselected package fontconfig-config. 365s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 365s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 365s Selecting previously unselected package libfontconfig1:arm64. 365s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 365s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 365s Selecting previously unselected package fontconfig. 365s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 365s Unpacking fontconfig (2.15.0-1ubuntu1) ... 365s Selecting previously unselected package fonts-font-awesome. 365s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 365s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 365s Selecting previously unselected package fonts-glyphicons-halflings. 365s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 365s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 365s Selecting previously unselected package fonts-lmodern. 365s Preparing to unpack .../041-fonts-lmodern_2.005-1_all.deb ... 365s Unpacking fonts-lmodern (2.005-1) ... 365s Selecting previously unselected package fonts-mathjax. 365s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 365s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 366s Selecting previously unselected package libgfortran5:arm64. 366s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 366s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 366s Selecting previously unselected package libgfortran-13-dev:arm64. 366s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 366s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 366s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 366s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 366s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 366s Selecting previously unselected package gfortran-13. 366s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 366s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 366s Selecting previously unselected package gfortran-aarch64-linux-gnu. 366s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 366s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 366s Selecting previously unselected package gfortran. 366s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 366s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 366s Selecting previously unselected package icu-devtools. 366s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_arm64.deb ... 366s Unpacking icu-devtools (74.2-1ubuntu1) ... 366s Selecting previously unselected package javascript-common. 366s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 366s Unpacking javascript-common (11+nmu1) ... 366s Selecting previously unselected package libio-string-perl. 366s Preparing to unpack .../051-libio-string-perl_1.08-4_all.deb ... 366s Unpacking libio-string-perl (1.08-4) ... 366s Selecting previously unselected package liblatex-tounicode-perl. 366s Preparing to unpack .../052-liblatex-tounicode-perl_0.54-2_all.deb ... 366s Unpacking liblatex-tounicode-perl (0.54-2) ... 366s Selecting previously unselected package libbibtex-parser-perl. 366s Preparing to unpack .../053-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 366s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 366s Selecting previously unselected package libblas3:arm64. 366s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 366s Unpacking libblas3:arm64 (3.12.0-3) ... 366s Selecting previously unselected package libblas-dev:arm64. 366s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 366s Unpacking libblas-dev:arm64 (3.12.0-3) ... 366s Selecting previously unselected package libboost1.83-dev:arm64. 366s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 366s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 368s Selecting previously unselected package libboost-dev:arm64. 368s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 368s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 368s Selecting previously unselected package libbz2-dev:arm64. 368s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 368s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 368s Selecting previously unselected package libpixman-1-0:arm64. 368s Preparing to unpack .../059-libpixman-1-0_0.42.2-1_arm64.deb ... 368s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 368s Selecting previously unselected package libxcb-render0:arm64. 368s Preparing to unpack .../060-libxcb-render0_1.15-1_arm64.deb ... 368s Unpacking libxcb-render0:arm64 (1.15-1) ... 368s Selecting previously unselected package libxcb-shm0:arm64. 368s Preparing to unpack .../061-libxcb-shm0_1.15-1_arm64.deb ... 368s Unpacking libxcb-shm0:arm64 (1.15-1) ... 368s Selecting previously unselected package libxrender1:arm64. 368s Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 368s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 368s Selecting previously unselected package libcairo2:arm64. 368s Preparing to unpack .../063-libcairo2_1.18.0-1_arm64.deb ... 368s Unpacking libcairo2:arm64 (1.18.0-1) ... 368s Selecting previously unselected package libdatrie1:arm64. 368s Preparing to unpack .../064-libdatrie1_0.2.13-3_arm64.deb ... 368s Unpacking libdatrie1:arm64 (0.2.13-3) ... 368s Selecting previously unselected package libdeflate0:arm64. 368s Preparing to unpack .../065-libdeflate0_1.19-1_arm64.deb ... 368s Unpacking libdeflate0:arm64 (1.19-1) ... 368s Selecting previously unselected package libgraphite2-3:arm64. 368s Preparing to unpack .../066-libgraphite2-3_1.3.14-2_arm64.deb ... 368s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 368s Selecting previously unselected package libharfbuzz0b:arm64. 368s Preparing to unpack .../067-libharfbuzz0b_8.3.0-2_arm64.deb ... 368s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 368s Selecting previously unselected package x11-common. 368s Preparing to unpack .../068-x11-common_1%3a7.7+23ubuntu2_all.deb ... 368s Unpacking x11-common (1:7.7+23ubuntu2) ... 368s Selecting previously unselected package libice6:arm64. 368s Preparing to unpack .../069-libice6_2%3a1.0.10-1build2_arm64.deb ... 368s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 368s Selecting previously unselected package libicu-dev:arm64. 368s Preparing to unpack .../070-libicu-dev_74.2-1ubuntu1_arm64.deb ... 368s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 369s Selecting previously unselected package libjpeg-turbo8:arm64. 369s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 369s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 369s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 369s Preparing to unpack .../072-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 369s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 369s Selecting previously unselected package libjpeg8:arm64. 369s Preparing to unpack .../073-libjpeg8_8c-2ubuntu11_arm64.deb ... 369s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 369s Selecting previously unselected package libjpeg8-dev:arm64. 369s Preparing to unpack .../074-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 369s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 369s Selecting previously unselected package libjpeg-dev:arm64. 369s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 369s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 369s Selecting previously unselected package libjs-bootstrap. 369s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 369s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 369s Selecting previously unselected package libjs-popper.js. 369s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 369s Unpacking libjs-popper.js (1.16.1+ds-6) ... 369s Selecting previously unselected package libjs-bootstrap4. 369s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 369s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 369s Selecting previously unselected package libjs-d3. 369s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 369s Unpacking libjs-d3 (3.5.17-4) ... 369s Selecting previously unselected package libjs-es5-shim. 369s Preparing to unpack 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.../085-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 369s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 369s Selecting previously unselected package libjs-jquery-selectize.js. 369s Preparing to unpack .../086-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 369s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 369s Selecting previously unselected package libjs-jquery-ui. 369s Preparing to unpack .../087-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 369s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 370s Selecting previously unselected package libjs-json. 370s Preparing to unpack .../088-libjs-json_0~20221030+~1.0.8-1_all.deb ... 370s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 370s Selecting previously unselected package libjs-lunr. 370s Preparing to unpack .../089-libjs-lunr_2.3.9~dfsg-2_all.deb ... 370s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 370s Selecting previously unselected package libjs-prettify. 370s Preparing to unpack .../090-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 370s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 370s Selecting previously unselected package libkpathsea6:arm64. 370s Preparing to unpack .../091-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 370s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 370s Selecting previously unselected package liblapack3:arm64. 370s Preparing to unpack .../092-liblapack3_3.12.0-3_arm64.deb ... 370s Unpacking liblapack3:arm64 (3.12.0-3) ... 370s Selecting previously unselected package liblapack-dev:arm64. 370s Preparing to unpack .../093-liblapack-dev_3.12.0-3_arm64.deb ... 370s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 370s Selecting previously unselected package liblerc4:arm64. 370s Preparing to unpack .../094-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 370s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 370s Selecting previously unselected package liblua5.4-0:arm64. 370s Preparing to unpack .../095-liblua5.4-0_5.4.6-3_arm64.deb ... 370s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 370s Selecting previously unselected package libncurses-dev:arm64. 370s Preparing to unpack .../096-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 370s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 370s Selecting previously unselected package libthai-data. 370s Preparing to unpack .../097-libthai-data_0.1.29-2_all.deb ... 370s Unpacking libthai-data (0.1.29-2) ... 370s Selecting previously unselected package libthai0:arm64. 370s Preparing to unpack .../098-libthai0_0.1.29-2_arm64.deb ... 370s Unpacking libthai0:arm64 (0.1.29-2) ... 370s Selecting previously unselected package libpango-1.0-0:arm64. 370s Preparing to unpack .../099-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 370s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 370s Selecting previously unselected package libpangoft2-1.0-0:arm64. 370s Preparing to unpack .../100-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 370s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 370s Selecting previously unselected package libpangocairo-1.0-0:arm64. 370s Preparing to unpack .../101-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 370s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 370s Selecting previously unselected package libpaper1:arm64. 370s Preparing to unpack .../102-libpaper1_1.1.29_arm64.deb ... 370s Unpacking libpaper1:arm64 (1.1.29) ... 371s Selecting previously unselected package libpaper-utils. 371s Preparing to unpack .../103-libpaper-utils_1.1.29_arm64.deb ... 371s Unpacking libpaper-utils (1.1.29) ... 371s Selecting previously unselected package libpcre2-16-0:arm64. 371s Preparing to unpack .../104-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 371s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 371s Selecting previously unselected package libpcre2-32-0:arm64. 371s Preparing to unpack .../105-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 371s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 371s Selecting previously unselected package libpcre2-posix3:arm64. 371s Preparing to unpack .../106-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 371s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 371s Selecting previously unselected package libpcre2-dev:arm64. 371s Preparing to unpack .../107-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 371s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 371s Selecting previously unselected package libpkgconf3:arm64. 371s Preparing to unpack .../108-libpkgconf3_1.8.1-2_arm64.deb ... 371s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 371s Selecting previously unselected package zlib1g-dev:arm64. 371s Preparing to unpack .../109-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 371s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 371s Selecting previously unselected package libpng-dev:arm64. 371s Preparing to unpack .../110-libpng-dev_1.6.43-1_arm64.deb ... 371s Unpacking libpng-dev:arm64 (1.6.43-1) ... 371s Selecting previously unselected package libpotrace0:arm64. 371s Preparing to unpack .../111-libpotrace0_1.16-2_arm64.deb ... 371s Unpacking libpotrace0:arm64 (1.16-2) ... 371s Selecting previously unselected package libptexenc1:arm64. 371s Preparing to unpack .../112-libptexenc1_2023.20230311.66589-9_arm64.deb ... 371s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 371s Selecting previously unselected package libreadline-dev:arm64. 371s Preparing to unpack .../113-libreadline-dev_8.2-3_arm64.deb ... 371s Unpacking libreadline-dev:arm64 (8.2-3) ... 371s Selecting previously unselected package libsharpyuv0:arm64. 371s Preparing to unpack .../114-libsharpyuv0_1.3.2-0.4_arm64.deb ... 371s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 371s Selecting previously unselected package libsm6:arm64. 371s Preparing to unpack .../115-libsm6_2%3a1.2.3-1build2_arm64.deb ... 371s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 371s Selecting previously unselected package libsynctex2:arm64. 371s Preparing to unpack .../116-libsynctex2_2023.20230311.66589-9_arm64.deb ... 371s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 372s Selecting previously unselected package libtcl8.6:arm64. 372s Preparing to unpack .../117-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 372s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 372s Selecting previously unselected package libteckit0:arm64. 372s Preparing to unpack .../118-libteckit0_2.5.12+ds1-1_arm64.deb ... 372s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 372s Selecting previously unselected package libtexlua53-5:arm64. 372s Preparing to unpack .../119-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 372s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 372s Selecting previously unselected package libjbig0:arm64. 372s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 372s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 372s Selecting previously unselected package libwebp7:arm64. 372s Preparing to unpack .../121-libwebp7_1.3.2-0.4_arm64.deb ... 372s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 372s Selecting previously unselected package libtiff6:arm64. 372s Preparing to unpack .../122-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 372s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 372s Selecting previously unselected package libxft2:arm64. 372s Preparing to unpack .../123-libxft2_2.3.6-1_arm64.deb ... 372s Unpacking libxft2:arm64 (2.3.6-1) ... 372s Selecting previously unselected package libxss1:arm64. 372s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build2_arm64.deb ... 372s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 372s Selecting previously unselected package libtk8.6:arm64. 372s Preparing to unpack .../125-libtk8.6_8.6.13-2_arm64.deb ... 372s Unpacking libtk8.6:arm64 (8.6.13-2) ... 372s Selecting previously unselected package libxt6:arm64. 372s Preparing to unpack .../126-libxt6_1%3a1.2.1-1.1_arm64.deb ... 372s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 372s Selecting previously unselected package libxmu6:arm64. 372s Preparing to unpack .../127-libxmu6_2%3a1.1.3-3_arm64.deb ... 372s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 372s Selecting previously unselected package libxpm4:arm64. 372s Preparing to unpack .../128-libxpm4_1%3a3.5.17-1_arm64.deb ... 372s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 372s Selecting previously unselected package libxaw7:arm64. 372s Preparing to unpack .../129-libxaw7_2%3a1.0.14-1_arm64.deb ... 372s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 372s Selecting previously unselected package libxi6:arm64. 372s Preparing to unpack .../130-libxi6_2%3a1.8.1-1_arm64.deb ... 372s Unpacking libxi6:arm64 (2:1.8.1-1) ... 373s Selecting previously unselected package libzzip-0-13:arm64. 373s Preparing to unpack .../131-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 373s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 373s Selecting previously unselected package node-bootstrap-sass. 373s Preparing to unpack .../132-node-bootstrap-sass_3.4.3-2_all.deb ... 373s Unpacking node-bootstrap-sass (3.4.3-2) ... 373s Selecting previously unselected package node-html5shiv. 373s Preparing to unpack .../133-node-html5shiv_3.7.3+dfsg-5_all.deb ... 373s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 373s Selecting previously unselected package node-normalize.css. 373s Preparing to unpack .../134-node-normalize.css_8.0.1-5_all.deb ... 373s Unpacking node-normalize.css (8.0.1-5) ... 373s Selecting previously unselected package pandoc-data. 373s Preparing to unpack .../135-pandoc-data_3.1.3-1_all.deb ... 373s Unpacking pandoc-data (3.1.3-1) ... 373s Selecting previously unselected package pandoc. 373s Preparing to unpack .../136-pandoc_3.1.3+ds-2_arm64.deb ... 373s Unpacking pandoc (3.1.3+ds-2) ... 374s Selecting previously unselected package pkgconf-bin. 374s Preparing to unpack .../137-pkgconf-bin_1.8.1-2_arm64.deb ... 374s Unpacking pkgconf-bin (1.8.1-2) ... 374s Selecting previously unselected package pkgconf:arm64. 374s Preparing to unpack .../138-pkgconf_1.8.1-2_arm64.deb ... 374s Unpacking pkgconf:arm64 (1.8.1-2) ... 374s Selecting previously unselected package pkg-config:arm64. 374s Preparing to unpack .../139-pkg-config_1.8.1-2_arm64.deb ... 374s Unpacking pkg-config:arm64 (1.8.1-2) ... 374s Selecting previously unselected package zip. 374s Preparing to unpack .../140-zip_3.0-13_arm64.deb ... 374s Unpacking zip (3.0-13) ... 374s Selecting previously unselected package unzip. 374s Preparing to unpack .../141-unzip_6.0-28ubuntu3_arm64.deb ... 374s Unpacking unzip (6.0-28ubuntu3) ... 374s Selecting previously unselected package xdg-utils. 374s Preparing to unpack .../142-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 374s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 374s Selecting previously unselected package r-base-core. 374s Preparing to unpack .../143-r-base-core_4.3.2-1build1_arm64.deb ... 374s Unpacking r-base-core (4.3.2-1build1) ... 375s Selecting previously unselected package liblzma-dev:arm64. 375s Preparing to unpack .../144-liblzma-dev_5.4.5-0.3_arm64.deb ... 375s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 375s Selecting previously unselected package r-base-dev. 375s Preparing to unpack .../145-r-base-dev_4.3.2-1build1_all.deb ... 375s Unpacking r-base-dev (4.3.2-1build1) ... 375s Selecting previously unselected package pkg-r-autopkgtest. 375s Preparing to unpack .../146-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 375s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 375s Selecting previously unselected package r-bioc-biocgenerics. 375s Preparing to unpack .../147-r-bioc-biocgenerics_0.48.1-2_all.deb ... 375s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 375s Selecting previously unselected package r-bioc-biobase. 375s Preparing to unpack .../148-r-bioc-biobase_2.62.0-1_arm64.deb ... 375s Unpacking r-bioc-biobase (2.62.0-1) ... 375s Selecting previously unselected package r-bioc-s4vectors. 375s Preparing to unpack .../149-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 375s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 375s Selecting previously unselected package r-bioc-iranges. 375s Preparing to unpack .../150-r-bioc-iranges_2.36.0-1_arm64.deb ... 375s Unpacking r-bioc-iranges (2.36.0-1) ... 375s Selecting previously unselected package r-cran-dbi. 375s Preparing to unpack .../151-r-cran-dbi_1.2.2-1_all.deb ... 375s Unpacking r-cran-dbi (1.2.2-1) ... 376s Selecting previously unselected package r-cran-bit. 376s Preparing to unpack .../152-r-cran-bit_4.0.5-1_arm64.deb ... 376s Unpacking r-cran-bit (4.0.5-1) ... 376s Selecting previously unselected package r-cran-bit64. 376s Preparing to unpack .../153-r-cran-bit64_4.0.5-1_arm64.deb ... 376s Unpacking r-cran-bit64 (4.0.5-1) ... 376s Selecting previously unselected package r-cran-rlang. 376s Preparing to unpack .../154-r-cran-rlang_1.1.3-1_arm64.deb ... 376s Unpacking r-cran-rlang (1.1.3-1) ... 376s Selecting previously unselected package r-cran-cli. 376s Preparing to unpack .../155-r-cran-cli_3.6.2-1_arm64.deb ... 376s Unpacking r-cran-cli (3.6.2-1) ... 376s Selecting previously unselected package r-cran-glue. 376s Preparing to unpack .../156-r-cran-glue_1.7.0-1_arm64.deb ... 376s Unpacking r-cran-glue (1.7.0-1) ... 376s Selecting previously unselected package r-cran-lifecycle. 376s Preparing to unpack .../157-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 376s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 376s Selecting previously unselected package r-cran-vctrs. 376s Preparing to unpack .../158-r-cran-vctrs_0.6.5-1_arm64.deb ... 376s Unpacking r-cran-vctrs (0.6.5-1) ... 376s Selecting previously unselected package r-cran-blob. 376s Preparing to unpack .../159-r-cran-blob_1.2.4-1_all.deb ... 376s Unpacking r-cran-blob (1.2.4-1) ... 376s Selecting previously unselected package r-cran-fastmap. 376s Preparing to unpack .../160-r-cran-fastmap_1.1.1-1_arm64.deb ... 376s Unpacking r-cran-fastmap (1.1.1-1) ... 376s Selecting previously unselected package r-cran-cachem. 376s Preparing to unpack .../161-r-cran-cachem_1.0.8-1_arm64.deb ... 376s Unpacking r-cran-cachem (1.0.8-1) ... 376s Selecting previously unselected package r-cran-memoise. 376s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ... 376s Unpacking r-cran-memoise (2.0.1-1) ... 376s Selecting previously unselected package r-cran-pkgconfig. 376s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 376s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 376s Selecting previously unselected package r-cran-plogr. 376s Preparing to unpack .../164-r-cran-plogr_0.2.0-3build1_all.deb ... 376s Unpacking r-cran-plogr (0.2.0-3build1) ... 376s Selecting previously unselected package r-cran-cpp11. 376s Preparing to unpack .../165-r-cran-cpp11_0.4.7-1_all.deb ... 376s Unpacking r-cran-cpp11 (0.4.7-1) ... 376s Selecting previously unselected package r-cran-rsqlite. 376s Preparing to unpack .../166-r-cran-rsqlite_2.3.4-1_arm64.deb ... 376s Unpacking r-cran-rsqlite (2.3.4-1) ... 376s Selecting previously unselected package r-cran-curl. 377s Preparing to unpack .../167-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 377s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 377s Selecting previously unselected package r-cran-jsonlite. 377s Preparing to unpack .../168-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 377s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 377s Selecting previously unselected package r-cran-mime. 377s Preparing to unpack .../169-r-cran-mime_0.12-1_arm64.deb ... 377s Unpacking r-cran-mime (0.12-1) ... 377s Selecting previously unselected package r-cran-sys. 377s Preparing to unpack .../170-r-cran-sys_3.4.2-1_arm64.deb ... 377s Unpacking r-cran-sys (3.4.2-1) ... 377s Selecting previously unselected package r-cran-askpass. 377s Preparing to unpack .../171-r-cran-askpass_1.2.0-1_arm64.deb ... 377s Unpacking r-cran-askpass (1.2.0-1) ... 377s Selecting previously unselected package r-cran-openssl. 377s Preparing to unpack .../172-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 377s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 377s Selecting previously unselected package r-cran-r6. 377s Preparing to unpack .../173-r-cran-r6_2.5.1-1_all.deb ... 377s Unpacking r-cran-r6 (2.5.1-1) ... 377s Selecting previously unselected package r-cran-httr. 377s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ... 377s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 377s Selecting previously unselected package r-cran-png. 377s Preparing to unpack .../175-r-cran-png_0.1-8-1_arm64.deb ... 377s Unpacking r-cran-png (0.1-8-1) ... 377s Selecting previously unselected package r-bioc-zlibbioc. 377s Preparing to unpack .../176-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 377s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 377s Selecting previously unselected package r-bioc-xvector. 377s Preparing to unpack .../177-r-bioc-xvector_0.42.0-1_arm64.deb ... 377s Unpacking r-bioc-xvector (0.42.0-1) ... 377s Selecting previously unselected package r-cran-bitops. 377s Preparing to unpack .../178-r-cran-bitops_1.0-7-1_arm64.deb ... 377s Unpacking r-cran-bitops (1.0-7-1) ... 377s Selecting previously unselected package r-cran-rcurl. 377s Preparing to unpack .../179-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 377s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 377s Selecting previously unselected package r-bioc-genomeinfodbdata. 377s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 377s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 377s Selecting previously unselected package r-bioc-genomeinfodb. 377s Preparing to unpack .../181-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 377s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 377s Selecting previously unselected package r-cran-crayon. 377s Preparing to unpack .../182-r-cran-crayon_1.5.2-1_all.deb ... 377s Unpacking r-cran-crayon (1.5.2-1) ... 377s Selecting previously unselected package r-bioc-biostrings. 377s Preparing to unpack .../183-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 377s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 378s Selecting previously unselected package r-bioc-keggrest. 378s Preparing to unpack .../184-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 378s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 378s Selecting previously unselected package r-bioc-annotationdbi. 378s Preparing to unpack .../185-r-bioc-annotationdbi_1.64.1-1_all.deb ... 378s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 378s Selecting previously unselected package r-cran-xml. 378s Preparing to unpack .../186-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 378s Unpacking r-cran-xml (3.99-0.16.1-1) ... 378s Selecting previously unselected package r-cran-xtable. 378s Preparing to unpack .../187-r-cran-xtable_1%3a1.8-4-2_all.deb ... 378s Unpacking r-cran-xtable (1:1.8-4-2) ... 378s Selecting previously unselected package r-bioc-annotate. 378s Preparing to unpack .../188-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 378s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 378s Selecting previously unselected package r-cran-generics. 378s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 378s Unpacking r-cran-generics (0.1.3-1) ... 378s Selecting previously unselected package r-cran-magrittr. 378s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_arm64.deb ... 378s Unpacking r-cran-magrittr (2.0.3-1) ... 378s Selecting previously unselected package r-cran-fansi. 378s Preparing to unpack .../191-r-cran-fansi_1.0.5-1_arm64.deb ... 378s Unpacking r-cran-fansi (1.0.5-1) ... 378s Selecting previously unselected package r-cran-utf8. 378s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_arm64.deb ... 378s Unpacking r-cran-utf8 (1.2.4-1) ... 378s Selecting previously unselected package r-cran-pillar. 378s Preparing to unpack .../193-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 378s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 378s Selecting previously unselected package r-cran-tibble. 378s Preparing to unpack .../194-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 378s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 378s Selecting previously unselected package r-cran-withr. 379s Preparing to unpack .../195-r-cran-withr_2.5.0-1_all.deb ... 379s Unpacking r-cran-withr (2.5.0-1) ... 379s Selecting previously unselected package r-cran-tidyselect. 379s Preparing to unpack .../196-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 379s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 379s Selecting previously unselected package r-cran-dplyr. 379s Preparing to unpack .../197-r-cran-dplyr_1.1.4-1_arm64.deb ... 379s Unpacking r-cran-dplyr (1.1.4-1) ... 379s Selecting previously unselected package r-cran-purrr. 379s Preparing to unpack .../198-r-cran-purrr_1.0.2-1_arm64.deb ... 379s Unpacking r-cran-purrr (1.0.2-1) ... 379s Selecting previously unselected package r-cran-stringi. 379s Preparing to unpack .../199-r-cran-stringi_1.8.3-1_arm64.deb ... 379s Unpacking r-cran-stringi (1.8.3-1) ... 379s Selecting previously unselected package r-cran-stringr. 379s Preparing to unpack .../200-r-cran-stringr_1.5.1-1_all.deb ... 379s Unpacking r-cran-stringr (1.5.1-1) ... 379s Selecting previously unselected package r-cran-tidyr. 379s Preparing to unpack .../201-r-cran-tidyr_1.3.1-1_arm64.deb ... 379s Unpacking r-cran-tidyr (1.3.1-1) ... 379s Selecting previously unselected package r-cran-dbplyr. 379s Preparing to unpack .../202-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 379s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 379s Selecting previously unselected package r-cran-filelock. 379s Preparing to unpack .../203-r-cran-filelock_1.0.3-1_arm64.deb ... 379s Unpacking r-cran-filelock (1.0.3-1) ... 379s Selecting previously unselected package r-bioc-biocfilecache. 379s Preparing to unpack .../204-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 379s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 379s Selecting previously unselected package r-bioc-biocio. 379s Preparing to unpack .../205-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 379s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 379s Selecting previously unselected package r-cran-formatr. 379s Preparing to unpack .../206-r-cran-formatr_1.14-1_all.deb ... 379s Unpacking r-cran-formatr (1.14-1) ... 379s Selecting previously unselected package r-cran-lambda.r. 379s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build1_all.deb ... 379s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 379s Selecting previously unselected package r-cran-futile.options. 379s Preparing to unpack .../208-r-cran-futile.options_1.0.1-3build1_all.deb ... 379s Unpacking r-cran-futile.options (1.0.1-3build1) ... 379s Selecting previously unselected package r-cran-futile.logger. 379s Preparing to unpack .../209-r-cran-futile.logger_1.4.3-4build1_all.deb ... 379s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 379s Selecting previously unselected package r-cran-snow. 380s Preparing to unpack .../210-r-cran-snow_1%3a0.4.4-2_all.deb ... 380s Unpacking r-cran-snow (1:0.4.4-2) ... 380s Selecting previously unselected package r-cran-codetools. 380s Preparing to unpack .../211-r-cran-codetools_0.2-19-1_all.deb ... 380s Unpacking r-cran-codetools (0.2-19-1) ... 380s Selecting previously unselected package r-cran-bh. 380s Preparing to unpack .../212-r-cran-bh_1.84.0-1_all.deb ... 380s Unpacking r-cran-bh (1.84.0-1) ... 380s Selecting previously unselected package r-bioc-biocparallel. 380s Preparing to unpack .../213-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 380s Unpacking r-bioc-biocparallel (1.36.0-1) ... 380s Selecting previously unselected package r-cran-base64enc. 380s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3_arm64.deb ... 380s Unpacking r-cran-base64enc (0.1-3-3) ... 380s Selecting previously unselected package r-cran-digest. 380s Preparing to unpack .../215-r-cran-digest_0.6.34-1_arm64.deb ... 380s Unpacking r-cran-digest (0.6.34-1) ... 380s Selecting previously unselected package r-cran-ellipsis. 380s Preparing to unpack .../216-r-cran-ellipsis_0.3.2-2_arm64.deb ... 380s Unpacking r-cran-ellipsis (0.3.2-2) ... 380s Selecting previously unselected package r-cran-htmltools. 380s Preparing to unpack .../217-r-cran-htmltools_0.5.7-1_arm64.deb ... 380s Unpacking r-cran-htmltools (0.5.7-1) ... 380s Selecting previously unselected package r-cran-evaluate. 380s Preparing to unpack .../218-r-cran-evaluate_0.23-1_all.deb ... 380s Unpacking r-cran-evaluate (0.23-1) ... 380s Selecting previously unselected package r-cran-xfun. 380s Preparing to unpack .../219-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 380s Unpacking r-cran-xfun (0.41+dfsg-1) ... 380s Selecting previously unselected package r-cran-highr. 381s Preparing to unpack .../220-r-cran-highr_0.10+dfsg-1_all.deb ... 381s Unpacking r-cran-highr (0.10+dfsg-1) ... 381s Selecting previously unselected package r-cran-yaml. 381s Preparing to unpack .../221-r-cran-yaml_2.3.8-1_arm64.deb ... 381s Unpacking r-cran-yaml (2.3.8-1) ... 381s Selecting previously unselected package libjs-mathjax. 381s Preparing to unpack .../222-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 381s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 381s Selecting previously unselected package r-cran-knitr. 381s Preparing to unpack .../223-r-cran-knitr_1.45+dfsg-1_all.deb ... 381s Unpacking r-cran-knitr (1.45+dfsg-1) ... 382s Selecting previously unselected package r-cran-jquerylib. 382s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 382s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 382s Selecting previously unselected package r-cran-fs. 382s Preparing to unpack .../225-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 382s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 382s Selecting previously unselected package r-cran-rappdirs. 382s Preparing to unpack .../226-r-cran-rappdirs_0.3.3-1_arm64.deb ... 382s Unpacking r-cran-rappdirs (0.3.3-1) ... 382s Selecting previously unselected package r-cran-sass. 382s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 382s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 382s Selecting previously unselected package r-cran-bslib. 382s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 382s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 382s Selecting previously unselected package r-cran-fontawesome. 382s Preparing to unpack .../229-r-cran-fontawesome_0.5.2-1_all.deb ... 382s Unpacking r-cran-fontawesome (0.5.2-1) ... 382s Selecting previously unselected package r-cran-tinytex. 382s Preparing to unpack .../230-r-cran-tinytex_0.49-1_all.deb ... 382s Unpacking r-cran-tinytex (0.49-1) ... 382s Selecting previously unselected package libjs-modernizr. 382s Preparing to unpack .../231-libjs-modernizr_2.6.2+ds1-5_all.deb ... 382s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 382s Selecting previously unselected package r-cran-littler. 382s Preparing to unpack .../232-r-cran-littler_0.3.19-1_arm64.deb ... 382s Unpacking r-cran-littler (0.3.19-1) ... 382s Selecting previously unselected package r-cran-pkgkitten. 382s Preparing to unpack .../233-r-cran-pkgkitten_0.2.3-1_all.deb ... 382s Unpacking r-cran-pkgkitten (0.2.3-1) ... 383s Selecting previously unselected package r-cran-rcpp. 383s Preparing to unpack .../234-r-cran-rcpp_1.0.12-1_arm64.deb ... 383s Unpacking r-cran-rcpp (1.0.12-1) ... 383s Selecting previously unselected package r-cran-later. 383s Preparing to unpack .../235-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 383s Unpacking r-cran-later (1.3.2+dfsg-1) ... 383s Selecting previously unselected package r-cran-promises. 383s Preparing to unpack .../236-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 383s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 383s Selecting previously unselected package r-cran-httpuv. 383s Preparing to unpack .../237-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 383s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 383s Selecting previously unselected package r-cran-sourcetools. 383s Preparing to unpack .../238-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 383s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 383s Selecting previously unselected package r-cran-commonmark. 383s Preparing to unpack .../239-r-cran-commonmark_1.9.1-1_arm64.deb ... 383s Unpacking r-cran-commonmark (1.9.1-1) ... 383s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 383s Preparing to unpack .../240-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 383s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 383s Selecting previously unselected package r-cran-shiny. 383s Preparing to unpack .../241-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 383s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 383s Selecting previously unselected package r-cran-rmarkdown. 383s Preparing to unpack .../242-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 383s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 383s Selecting previously unselected package r-cran-bookdown. 383s Preparing to unpack .../243-r-cran-bookdown_0.37+dfsg-1_all.deb ... 383s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 383s Selecting previously unselected package r-cran-biocmanager. 384s Preparing to unpack .../244-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 384s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 384s Selecting previously unselected package tex-common. 384s Preparing to unpack .../245-tex-common_6.18_all.deb ... 384s Unpacking tex-common (6.18) ... 384s Selecting previously unselected package t1utils. 384s Preparing to unpack .../246-t1utils_1.41-4build2_arm64.deb ... 384s Unpacking t1utils (1.41-4build2) ... 384s Selecting previously unselected package texlive-binaries. 384s Preparing to unpack .../247-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 384s Unpacking texlive-binaries (2023.20230311.66589-9) ... 384s Selecting previously unselected package texlive-base. 384s Preparing to unpack .../248-texlive-base_2023.20240207-1_all.deb ... 384s Unpacking texlive-base (2023.20240207-1) ... 385s Selecting previously unselected package texlive-latex-base. 385s Preparing to unpack .../249-texlive-latex-base_2023.20240207-1_all.deb ... 385s Unpacking texlive-latex-base (2023.20240207-1) ... 385s Selecting previously unselected package texlive-bibtex-extra. 385s Preparing to unpack .../250-texlive-bibtex-extra_2023.20240207-1_all.deb ... 385s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 388s Selecting previously unselected package r-bioc-biocstyle. 389s Preparing to unpack .../251-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 389s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 389s Selecting previously unselected package r-cran-hms. 389s Preparing to unpack .../252-r-cran-hms_1.1.3-1_all.deb ... 389s Unpacking r-cran-hms (1.1.3-1) ... 389s Selecting previously unselected package r-cran-prettyunits. 389s Preparing to unpack .../253-r-cran-prettyunits_1.2.0-1_all.deb ... 389s Unpacking r-cran-prettyunits (1.2.0-1) ... 389s Selecting previously unselected package r-cran-progress. 389s Preparing to unpack .../254-r-cran-progress_1.2.3-1_all.deb ... 389s Unpacking r-cran-progress (1.2.3-1) ... 389s Selecting previously unselected package r-cran-xml2. 389s Preparing to unpack .../255-r-cran-xml2_1.3.6-1_arm64.deb ... 389s Unpacking r-cran-xml2 (1.3.6-1) ... 389s Selecting previously unselected package r-bioc-biomart. 389s Preparing to unpack .../256-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 389s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 389s Selecting previously unselected package r-bioc-genomicranges. 389s Preparing to unpack .../257-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 389s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 389s Selecting previously unselected package r-bioc-rhtslib. 389s Preparing to unpack .../258-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 389s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 389s Selecting previously unselected package r-bioc-rsamtools. 390s Preparing to unpack .../259-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 390s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 390s Selecting previously unselected package r-cran-matrixstats. 390s Preparing to unpack .../260-r-cran-matrixstats_1.2.0-1_arm64.deb ... 390s Unpacking r-cran-matrixstats (1.2.0-1) ... 390s Selecting previously unselected package r-bioc-matrixgenerics. 390s Preparing to unpack .../261-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 390s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 390s Selecting previously unselected package r-cran-lattice. 390s Preparing to unpack .../262-r-cran-lattice_0.22-5-1_arm64.deb ... 390s Unpacking r-cran-lattice (0.22-5-1) ... 390s Selecting previously unselected package r-cran-matrix. 390s Preparing to unpack .../263-r-cran-matrix_1.6-5-1_arm64.deb ... 390s Unpacking r-cran-matrix (1.6-5-1) ... 390s Selecting previously unselected package r-cran-abind. 390s Preparing to unpack .../264-r-cran-abind_1.4-5-2_all.deb ... 390s Unpacking r-cran-abind (1.4-5-2) ... 390s Selecting previously unselected package r-bioc-s4arrays. 391s Preparing to unpack .../265-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 391s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 391s Selecting previously unselected package r-bioc-sparsearray. 391s Preparing to unpack .../266-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 391s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 391s Selecting previously unselected package r-bioc-delayedarray. 391s Preparing to unpack .../267-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 391s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 391s Selecting previously unselected package r-bioc-summarizedexperiment. 391s Preparing to unpack .../268-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 391s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 391s Selecting previously unselected package r-bioc-genomicalignments. 391s Preparing to unpack .../269-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 391s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 391s Selecting previously unselected package r-cran-rjson. 391s Preparing to unpack .../270-r-cran-rjson_0.2.21-1_arm64.deb ... 391s Unpacking r-cran-rjson (0.2.21-1) ... 391s Selecting previously unselected package r-cran-restfulr. 391s Preparing to unpack .../271-r-cran-restfulr_0.0.15-1_arm64.deb ... 391s Unpacking r-cran-restfulr (0.0.15-1) ... 391s Selecting previously unselected package r-bioc-rtracklayer. 391s Preparing to unpack .../272-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 391s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 391s Selecting previously unselected package r-bioc-bsgenome. 392s Preparing to unpack .../273-r-bioc-bsgenome_1.70.2-1_all.deb ... 392s Unpacking r-bioc-bsgenome (1.70.2-1) ... 392s Selecting previously unselected package r-cran-survival. 392s Preparing to unpack .../274-r-cran-survival_3.5-8-1_arm64.deb ... 392s Unpacking r-cran-survival (3.5-8-1) ... 392s Selecting previously unselected package r-bioc-genefilter. 392s Preparing to unpack .../275-r-bioc-genefilter_1.84.0-1_arm64.deb ... 392s Unpacking r-bioc-genefilter (1.84.0-1) ... 392s Selecting previously unselected package r-bioc-genomicfeatures. 392s Preparing to unpack .../276-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 392s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 392s Selecting previously unselected package r-bioc-variantannotation. 392s Preparing to unpack .../277-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 392s Unpacking r-bioc-variantannotation (1.48.1-1) ... 393s Selecting previously unselected package r-bioc-genomicfiles. 393s Preparing to unpack .../278-r-bioc-genomicfiles_1.38.0+dfsg-1_all.deb ... 393s Unpacking r-bioc-genomicfiles (1.38.0+dfsg-1) ... 393s Selecting previously unselected package r-bioc-snpstats. 393s Preparing to unpack .../279-r-bioc-snpstats_1.52.0+dfsg-1_arm64.deb ... 393s Unpacking r-bioc-snpstats (1.52.0+dfsg-1) ... 393s Selecting previously unselected package r-cran-runit. 393s Preparing to unpack .../280-r-cran-runit_0.4.32-3_all.deb ... 393s Unpacking r-cran-runit (0.4.32-3) ... 394s Selecting previously unselected package autopkgtest-satdep. 394s Preparing to unpack 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396s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 396s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 396s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 396s Setting up pandoc (3.1.3+ds-2) ... 396s Setting up liblapack-dev:arm64 (3.12.0-3) ... 396s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 396s Setting up pkg-config:arm64 (1.8.1-2) ... 396s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 396s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 396s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 396s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 396s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 396s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 396s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 396s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 396s Setting up libbz2-dev:arm64 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Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 401s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 401s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 401s Setting up r-bioc-genefilter (1.84.0-1) ... 401s Setting up r-bioc-genomicalignments (1.38.2-1) ... 401s Setting up r-cran-bookdown (0.37+dfsg-1) ... 401s Setting up r-bioc-rtracklayer (1.62.0-1) ... 401s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 401s Setting up r-bioc-bsgenome (1.70.2-1) ... 401s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 401s Setting up r-bioc-variantannotation (1.48.1-1) ... 401s Setting up r-bioc-genomicfiles (1.38.0+dfsg-1) ... 401s Setting up autopkgtest-satdep (0) ... 401s Processing triggers for man-db (2.12.0-3) ... 402s Processing triggers for install-info (7.1-3) ... 402s Processing triggers for libc-bin (2.39-0ubuntu2) ... 403s Processing triggers for tex-common (6.18) ... 403s Running updmap-sys. This may take some time... done. 403s Running mktexlsr /var/lib/texmf ... done. 403s Building format(s) --all. 439s This may take some time... done. 451s (Reading database ... 124087 files and directories currently installed.) 451s Removing autopkgtest-satdep (0) ... 451s autopkgtest [13:57:06]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 451s autopkgtest [13:57:06]: test pkg-r-autopkgtest: [----------------------- 452s Test: Try to load the R library GenomicFiles 452s 452s R version 4.3.2 (2023-10-31) -- "Eye Holes" 452s Copyright (C) 2023 The R Foundation for Statistical Computing 452s Platform: aarch64-unknown-linux-gnu (64-bit) 452s 452s R is free software and comes with ABSOLUTELY NO WARRANTY. 452s You are welcome to redistribute it under certain conditions. 452s Type 'license()' or 'licence()' for distribution details. 452s 452s R is a collaborative project with many contributors. 452s Type 'contributors()' for more information and 452s 'citation()' on how to cite R or R packages in publications. 452s 452s Type 'demo()' for some demos, 'help()' for on-line help, or 452s 'help.start()' for an HTML browser interface to help. 452s Type 'q()' to quit R. 452s 452s > library('GenomicFiles') 452s Loading required package: BiocGenerics 452s 452s Attaching package: ‘BiocGenerics’ 452s 452s The following objects are masked from ‘package:stats’: 452s 452s IQR, mad, sd, var, xtabs 452s 452s The following objects are masked from ‘package:base’: 452s 452s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 452s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 452s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 452s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 452s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 452s table, tapply, union, unique, unsplit, which.max, which.min 452s 452s Loading required package: MatrixGenerics 452s Loading required package: matrixStats 452s 452s Attaching package: ‘MatrixGenerics’ 452s 452s The following objects are masked from ‘package:matrixStats’: 452s 452s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 452s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 452s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 452s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 452s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 452s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 452s colWeightedMeans, colWeightedMedians, colWeightedSds, 452s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 452s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 452s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 452s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 452s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 452s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 452s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 452s rowWeightedSds, rowWeightedVars 452s 452s Loading required package: GenomicRanges 452s Loading required package: stats4 452s Loading required package: S4Vectors 453s 453s Attaching package: ‘S4Vectors’ 453s 453s The following object is masked from ‘package:utils’: 453s 453s findMatches 453s 453s The following objects are masked from ‘package:base’: 453s 453s expand.grid, I, unname 453s 453s Loading required package: IRanges 454s Loading required package: GenomeInfoDb 455s Loading required package: SummarizedExperiment 455s Loading required package: Biobase 455s Welcome to Bioconductor 455s 455s Vignettes contain introductory material; view with 455s 'browseVignettes()'. To cite Bioconductor, see 455s 'citation("Biobase")', and for packages 'citation("pkgname")'. 455s 455s 455s Attaching package: ‘Biobase’ 455s 455s The following object is masked from ‘package:MatrixGenerics’: 455s 455s rowMedians 455s 455s The following objects are masked from ‘package:matrixStats’: 455s 455s anyMissing, rowMedians 455s 458s Loading required package: BiocParallel 458s Loading required package: Rsamtools 458s Loading required package: Biostrings 458s Loading required package: XVector 459s 459s Attaching package: ‘Biostrings’ 459s 459s The following object is masked from ‘package:base’: 459s 459s strsplit 459s 459s Loading required package: rtracklayer 465s > 465s > 465s Other tests are currently unsupported! 465s They will be progressively added. 466s autopkgtest [13:57:21]: test pkg-r-autopkgtest: -----------------------] 466s pkg-r-autopkgtest PASS 466s autopkgtest [13:57:21]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 467s autopkgtest [13:57:22]: @@@@@@@@@@@@@@@@@@@@ summary 467s pkg-r-autopkgtest PASS 500s Creating nova instance adt-noble-arm64-r-bioc-genomicfiles-20240316-134935-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...