0s autopkgtest [13:42:10]: starting date and time: 2024-03-16 13:42:10+0000 0s autopkgtest [13:42:10]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:42:10]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.yrtcmmiw/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-genomicfiles --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-7.secgroup --name adt-noble-arm64-r-bioc-genomicfiles-20240316-134209-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 111s autopkgtest [13:44:01]: testbed dpkg architecture: arm64 111s autopkgtest [13:44:01]: testbed apt version: 2.7.12 111s autopkgtest [13:44:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 111s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 112s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 113s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 113s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 113s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 113s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 113s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 113s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 113s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 113s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 113s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 113s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 113s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 115s Fetched 9092 kB in 3s (3432 kB/s) 116s Reading package lists... 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s Calculating upgrade... 120s The following packages will be REMOVED: 120s libssl3 120s The following NEW packages will be installed: 120s libssl3t64 120s The following packages have been kept back: 120s curl 120s The following packages will be upgraded: 120s openssl ubuntu-minimal ubuntu-standard 120s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 120s Need to get 2775 kB of archives. 120s After this operation, 72.7 kB of additional disk space will be used. 120s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 121s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 121s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 121s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 121s Fetched 2775 kB in 1s (3734 kB/s) 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 122s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 122s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 122s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 122s wget depends on libssl3 (>= 3.0.0). 122s u-boot-tools depends on libssl3 (>= 3.0.0). 122s tnftp depends on libssl3 (>= 3.0.0). 122s tcpdump depends on libssl3 (>= 3.0.0). 122s systemd-resolved depends on libssl3 (>= 3.0.0). 122s systemd depends on libssl3 (>= 3.0.0). 122s sudo depends on libssl3 (>= 3.0.0). 122s sbsigntool depends on libssl3 (>= 3.0.0). 122s rsync depends on libssl3 (>= 3.0.0). 122s python3-cryptography depends on libssl3 (>= 3.0.0). 122s openssh-server depends on libssl3 (>= 3.0.10). 122s openssh-client depends on libssl3 (>= 3.0.10). 122s mtd-utils depends on libssl3 (>= 3.0.0). 122s mokutil depends on libssl3 (>= 3.0.0). 122s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 122s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 122s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 122s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 122s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 122s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 122s libnvme1 depends on libssl3 (>= 3.0.0). 122s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 122s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 122s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 122s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 122s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 122s kmod depends on libssl3 (>= 3.0.0). 122s dhcpcd-base depends on libssl3 (>= 3.0.0). 122s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 122s 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 122s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 122s Selecting previously unselected package libssl3t64:arm64. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 122s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 122s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 122s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 122s Unpacking ubuntu-minimal (1.536) over (1.535) ... 122s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 122s Unpacking ubuntu-standard (1.536) over (1.535) ... 122s Setting up ubuntu-minimal (1.536) ... 122s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 122s Setting up ubuntu-standard (1.536) ... 122s Setting up openssl (3.0.13-0ubuntu1) ... 122s Processing triggers for man-db (2.12.0-3) ... 123s Processing triggers for libc-bin (2.39-0ubuntu2) ... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 125s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 125s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 125s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 125s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 127s Reading package lists... 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s Calculating upgrade... 128s The following packages have been kept back: 128s curl 128s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 132s autopkgtest [13:44:22]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 132s autopkgtest [13:44:22]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicfiles 134s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (dsc) [2416 B] 134s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (tar) [291 kB] 134s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (diff) [5272 B] 134s gpgv: Signature made Fri Dec 1 10:41:34 2023 UTC 134s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 134s gpgv: issuer "tillea@rki.de" 134s gpgv: Can't check signature: No public key 134s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfiles_1.38.0+dfsg-1.dsc: no acceptable signature found 134s autopkgtest [13:44:24]: testing package r-bioc-genomicfiles version 1.38.0+dfsg-1 134s autopkgtest [13:44:24]: build not needed 135s autopkgtest [13:44:25]: test pkg-r-autopkgtest: preparing testbed 136s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Starting pkgProblemResolver with broken count: 0 137s Starting 2 pkgProblemResolver with broken count: 0 137s Done 137s The following additional packages will be installed: 137s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 137s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 137s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 137s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 137s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 137s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 137s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 137s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 137s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 137s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 137s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 137s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 137s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 137s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 137s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 137s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 137s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 137s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 137s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 137s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 137s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 137s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 137s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 137s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 137s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 137s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 137s libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 137s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 137s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 137s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 137s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 137s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-genefilter 137s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 137s r-bioc-genomicfeatures r-bioc-genomicfiles r-bioc-genomicranges 137s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib 137s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 137s r-bioc-snpstats r-bioc-sparsearray r-bioc-summarizedexperiment 137s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 138s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 138s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 138s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 138s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 138s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 138s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 138s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 138s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 138s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 138s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 138s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 138s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 138s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 138s r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang 138s r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny 138s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 138s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 138s r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 138s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 138s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 138s xdg-utils zip zlib1g-dev 138s Suggested packages: 138s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 138s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 138s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 138s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 138s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 138s libboost-context1.83-dev libboost-contract1.83-dev 138s libboost-coroutine1.83-dev libboost-date-time1.83-dev 138s libboost-exception1.83-dev libboost-fiber1.83-dev 138s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 138s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 138s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 138s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 138s libboost-numpy1.83-dev libboost-program-options1.83-dev 138s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 138s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 138s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 138s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 138s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 138s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 138s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 138s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 138s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 138s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 138s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 138s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 138s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 138s r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel 138s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 138s r-cran-webmockr r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats 138s r-cran-class r-cran-rcolorbrewer r-cran-r.utils r-bioc-edger 138s r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz 138s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 138s r-cran-hexbin r-bioc-rhdf5 r-cran-ggplot2 r-cran-roxygen2 r-cran-ff 138s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-getopt 138s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 138s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 138s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 138s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 138s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 138s hintview texlive-latex-base-doc wp2latex 138s Recommended packages: 138s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 138s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 138s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 138s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 138s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 138s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 138s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 138s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 138s r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-waldo r-cran-cairo 138s r-cran-markdown r-cran-ragg r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf 138s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 138s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 138s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 138s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 138s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 138s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 138s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 138s The following packages will be REMOVED: 138s libcurl4 libpsl5 138s The following NEW packages will be installed: 138s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 138s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 138s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 138s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 138s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 138s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 138s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 138s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 138s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 138s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 138s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 138s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 138s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 138s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 138s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 138s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 138s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 138s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 138s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 138s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 138s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 138s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 138s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 libptexenc1 138s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 138s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 138s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 138s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 138s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 138s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 138s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 138s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 138s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 138s r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb 138s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 138s r-bioc-genomicfiles r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 138s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 138s r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 138s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 138s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 138s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 138s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 138s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 138s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 138s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 138s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 138s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 138s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 138s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 138s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 138s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 138s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 138s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 138s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 138s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 138s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 138s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 138s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 138s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 138s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 138s The following packages will be upgraded: 138s curl 138s 1 upgraded, 284 newly installed, 2 to remove and 0 not upgraded. 138s Need to get 443 MB/443 MB of archives. 138s After this operation, 1368 MB of additional disk space will be used. 138s Get:1 /tmp/autopkgtest.EpQavm/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [772 B] 138s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 138s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 138s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 138s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 138s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 138s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 138s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 138s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 138s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 138s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 138s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 138s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 138s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 139s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 139s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 139s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 139s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 139s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 139s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 139s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 139s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 139s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 139s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 139s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 139s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 139s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 139s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 139s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 139s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 139s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 139s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 140s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 140s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 140s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 140s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 140s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 140s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 140s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 140s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 140s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 140s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 140s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 140s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 140s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 140s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 140s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 140s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 140s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 140s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 140s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 140s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 140s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 140s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 140s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 140s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 140s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 140s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 140s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 140s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 140s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 141s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 141s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 141s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 141s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 141s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 141s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 141s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 141s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 141s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 141s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 141s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 141s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 141s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 141s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 141s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 141s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 141s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 141s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 141s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 141s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 141s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 141s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 141s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 141s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 141s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 141s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 141s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 141s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 141s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 141s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 141s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 141s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 141s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 141s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 141s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 141s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 141s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 142s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 142s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 142s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 142s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 142s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 142s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 142s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 142s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 142s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 142s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 142s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 142s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 142s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 142s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 142s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 142s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 142s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 142s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 142s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 142s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 142s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 142s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 142s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 142s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 142s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 142s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 142s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 142s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 142s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 142s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 142s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 142s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 142s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 142s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 142s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 143s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 143s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 143s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 143s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 143s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 143s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 143s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 143s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 144s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 144s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 144s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 144s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 144s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 144s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 144s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 145s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 145s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 145s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 145s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 145s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 145s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 145s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 145s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 145s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 145s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 145s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 145s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 145s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 145s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 145s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 145s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 145s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 145s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 145s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 145s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 145s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 145s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 145s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 145s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 145s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 145s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 145s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 145s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 145s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 145s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 145s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 145s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 145s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 145s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 145s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 145s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 145s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 146s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 146s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 146s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 146s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 146s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 146s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 146s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 146s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 147s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 147s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 147s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 147s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 147s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 147s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 147s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 147s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 147s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 147s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 147s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 147s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 147s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 147s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 147s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 147s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 147s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 147s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 147s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 147s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 147s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 147s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 147s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 147s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 147s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 148s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 148s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 148s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 148s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 148s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 148s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 148s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 148s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 148s Get:227 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 148s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 148s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 148s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 148s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 148s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 148s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 148s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 148s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 148s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 148s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 148s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 148s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 148s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 148s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 148s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 148s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 148s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 148s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 148s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 148s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 148s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 148s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 148s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 148s Get:251 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 148s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 149s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 149s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 149s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 152s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 152s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 152s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 152s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 152s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 152s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 152s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 152s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 153s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1build1 [3636 kB] 153s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 153s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 153s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 153s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 153s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 153s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 153s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 153s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 153s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 153s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 153s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 153s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 153s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 153s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 154s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 154s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 154s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 154s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 154s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfiles all 1.38.0+dfsg-1 [532 kB] 154s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-snpstats arm64 1.52.0+dfsg-1 [7236 kB] 154s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 156s Preconfiguring packages ... 156s Fetched 443 MB in 17s (26.5 MB/s) 156s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 156s wget depends on libpsl5 (>= 0.16.0). 156s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 156s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 156s 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 156s Removing libpsl5:arm64 (0.21.2-1build1) ... 157s Selecting previously unselected package libpsl5t64:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 157s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 157s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 157s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 157s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 158s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 158s Selecting previously unselected package libcurl4t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 158s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 158s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 158s Selecting previously unselected package libc-dev-bin. 158s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 158s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 158s Selecting previously unselected package linux-libc-dev:arm64. 158s Preparing to unpack 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libc6-dev:arm64 (2.39-0ubuntu2) ... 158s Selecting previously unselected package libisl23:arm64. 158s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 158s Unpacking libisl23:arm64 (0.26-3) ... 158s Selecting previously unselected package libmpc3:arm64. 158s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 158s Unpacking libmpc3:arm64 (1.3.1-1) ... 158s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 158s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 158s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 158s Selecting previously unselected package cpp-13. 158s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 158s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 159s Selecting previously unselected package cpp-aarch64-linux-gnu. 159s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 159s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 159s Selecting previously unselected package cpp. 159s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 159s Unpacking cpp (4:13.2.0-7ubuntu1) ... 159s Selecting previously unselected package libcc1-0:arm64. 159s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libgomp1:arm64. 159s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libitm1:arm64. 159s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libatomic1:arm64. 159s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libasan8:arm64. 159s 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to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 159s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 159s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 159s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 159s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package gcc-13. 160s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 160s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package gcc-aarch64-linux-gnu. 160s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 160s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 160s Selecting previously unselected package gcc. 160s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 160s Unpacking gcc (4:13.2.0-7ubuntu1) ... 160s Selecting previously unselected package libstdc++-13-dev:arm64. 160s Preparing to unpack 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.../033-build-essential_12.10ubuntu1_arm64.deb ... 160s Unpacking build-essential (12.10ubuntu1) ... 160s Selecting previously unselected package dctrl-tools. 160s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 160s Unpacking dctrl-tools (2.24-3build2) ... 160s Selecting previously unselected package fonts-dejavu-mono. 160s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 160s Unpacking fonts-dejavu-mono (2.37-8) ... 160s Selecting previously unselected package fonts-dejavu-core. 160s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 160s Unpacking fonts-dejavu-core (2.37-8) ... 160s Selecting previously unselected package fontconfig-config. 160s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 160s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 161s Selecting previously unselected package libfontconfig1:arm64. 161s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 161s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 161s Selecting previously unselected package fontconfig. 161s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 161s Unpacking fontconfig (2.15.0-1ubuntu1) ... 161s Selecting previously unselected package fonts-font-awesome. 161s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 161s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 161s Selecting previously unselected package fonts-glyphicons-halflings. 161s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 161s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 161s Selecting previously unselected package fonts-lmodern. 161s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 161s Unpacking fonts-lmodern (2.005-1) ... 161s Selecting previously unselected package fonts-mathjax. 161s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 161s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 161s Selecting previously unselected package libgfortran5:arm64. 161s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 161s Selecting previously unselected package libgfortran-13-dev:arm64. 161s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 161s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 161s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 161s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package gfortran-13. 161s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 161s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package gfortran-aarch64-linux-gnu. 161s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 161s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 161s Selecting previously unselected package gfortran. 161s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 161s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 161s Selecting previously unselected package icu-devtools. 161s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 161s Unpacking icu-devtools (74.2-1ubuntu1) ... 161s Selecting previously unselected package javascript-common. 161s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 161s Unpacking javascript-common (11+nmu1) ... 161s Selecting previously unselected package libio-string-perl. 161s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 161s Unpacking libio-string-perl (1.08-4) ... 161s Selecting previously unselected package liblatex-tounicode-perl. 161s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 161s Unpacking liblatex-tounicode-perl (0.54-2) ... 161s Selecting previously unselected package libbibtex-parser-perl. 161s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 161s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 162s Selecting previously unselected package libblas3:arm64. 162s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 162s Unpacking libblas3:arm64 (3.12.0-3) ... 162s Selecting previously unselected package libblas-dev:arm64. 162s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 162s Unpacking libblas-dev:arm64 (3.12.0-3) ... 162s Selecting previously unselected package libboost1.83-dev:arm64. 162s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 162s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 163s Selecting previously unselected package libboost-dev:arm64. 163s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 163s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 163s Selecting previously unselected package libbz2-dev:arm64. 163s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 163s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 163s Selecting previously unselected package libpixman-1-0:arm64. 163s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 163s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 163s Selecting previously unselected package libxcb-render0:arm64. 163s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 163s Unpacking libxcb-render0:arm64 (1.15-1) ... 163s Selecting previously unselected package libxcb-shm0:arm64. 163s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 163s Unpacking libxcb-shm0:arm64 (1.15-1) ... 163s Selecting previously unselected package libxrender1:arm64. 164s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 164s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 164s Selecting previously unselected package libcairo2:arm64. 164s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 164s Unpacking libcairo2:arm64 (1.18.0-1) ... 164s Selecting previously unselected package libdatrie1:arm64. 164s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 164s Unpacking libdatrie1:arm64 (0.2.13-3) ... 164s Selecting previously unselected package libdeflate0:arm64. 164s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 164s Unpacking libdeflate0:arm64 (1.19-1) ... 164s Selecting previously unselected package libgraphite2-3:arm64. 164s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 164s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 164s Selecting previously unselected package libharfbuzz0b:arm64. 164s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 164s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 164s Selecting previously unselected package x11-common. 164s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 164s Unpacking x11-common (1:7.7+23ubuntu2) ... 164s Selecting previously unselected package libice6:arm64. 164s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 164s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 164s Selecting previously unselected package libicu-dev:arm64. 164s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 164s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 164s Selecting previously unselected package libjpeg-turbo8:arm64. 164s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 164s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 164s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 164s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 164s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 164s Selecting previously unselected package libjpeg8:arm64. 164s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 164s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 164s Selecting previously unselected package libjpeg8-dev:arm64. 164s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 164s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 164s Selecting previously unselected package libjpeg-dev:arm64. 164s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 164s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 164s Selecting previously unselected package libjs-bootstrap. 164s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 164s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 164s Selecting previously unselected package libjs-popper.js. 164s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 164s Unpacking libjs-popper.js (1.16.1+ds-6) ... 164s Selecting previously unselected package libjs-bootstrap4. 164s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 164s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 164s Selecting previously unselected package libjs-d3. 165s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 165s Unpacking libjs-d3 (3.5.17-4) ... 165s Selecting previously unselected package libjs-es5-shim. 165s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 165s Unpacking libjs-es5-shim (4.6.7-2) ... 165s Selecting previously unselected package libjs-highlight.js. 165s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 165s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 165s Selecting previously unselected package libjs-jquery. 165s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 165s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 165s Selecting previously unselected package libjs-jquery-datatables. 165s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 165s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 165s Selecting previously unselected package libjs-sifter.js. 165s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 165s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 165s Selecting previously unselected package libjs-microplugin.js. 165s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 165s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 165s Selecting previously unselected package libjs-jquery-selectize.js. 165s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 165s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 165s Selecting previously unselected package libjs-jquery-ui. 165s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 165s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 165s Selecting previously unselected package libjs-json. 165s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 165s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 165s Selecting previously unselected package libjs-lunr. 165s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 165s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 165s Selecting previously unselected package libjs-prettify. 165s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 165s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 165s Selecting previously unselected package libkpathsea6:arm64. 165s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 165s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 165s Selecting previously unselected package liblapack3:arm64. 165s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 165s Unpacking liblapack3:arm64 (3.12.0-3) ... 165s Selecting previously unselected package liblapack-dev:arm64. 165s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 165s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 165s Selecting previously unselected package liblerc4:arm64. 165s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 165s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 165s Selecting previously unselected package liblua5.4-0:arm64. 165s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 165s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 165s Selecting previously unselected package libncurses-dev:arm64. 165s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 165s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 165s Selecting previously unselected package libthai-data. 165s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 165s Unpacking libthai-data (0.1.29-2) ... 165s Selecting previously unselected package libthai0:arm64. 166s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 166s Unpacking libthai0:arm64 (0.1.29-2) ... 166s Selecting previously unselected package libpango-1.0-0:arm64. 166s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 166s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 166s Selecting previously unselected package libpangoft2-1.0-0:arm64. 166s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 166s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 166s Selecting previously unselected package libpangocairo-1.0-0:arm64. 166s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 166s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 166s Selecting previously unselected package libpaper1:arm64. 166s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 166s Unpacking libpaper1:arm64 (1.1.29) ... 166s Selecting previously unselected package libpaper-utils. 166s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 166s Unpacking libpaper-utils (1.1.29) ... 166s Selecting previously unselected package libpcre2-16-0:arm64. 166s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 166s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 166s Selecting previously unselected package libpcre2-32-0:arm64. 166s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 166s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 166s Selecting previously unselected package libpcre2-posix3:arm64. 167s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 167s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 167s Selecting previously unselected package libpcre2-dev:arm64. 167s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 167s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 167s Selecting previously unselected package libpkgconf3:arm64. 167s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 167s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 167s Selecting previously unselected package zlib1g-dev:arm64. 167s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 167s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 167s Selecting previously unselected package libpng-dev:arm64. 167s Preparing to unpack .../111-libpng-dev_1.6.43-1_arm64.deb ... 167s Unpacking libpng-dev:arm64 (1.6.43-1) ... 167s Selecting previously unselected package libpotrace0:arm64. 167s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 167s Unpacking libpotrace0:arm64 (1.16-2) ... 167s Selecting previously unselected package libptexenc1:arm64. 167s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 167s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 167s Selecting previously unselected package libreadline-dev:arm64. 167s Preparing to unpack .../114-libreadline-dev_8.2-3_arm64.deb ... 167s Unpacking libreadline-dev:arm64 (8.2-3) ... 167s Selecting previously unselected package libsharpyuv0:arm64. 167s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 167s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 167s Selecting previously unselected package libsm6:arm64. 167s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 167s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 167s Selecting previously unselected package libsynctex2:arm64. 168s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 168s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 168s Selecting previously unselected package libtcl8.6:arm64. 168s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 168s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 168s Selecting previously unselected package libteckit0:arm64. 168s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 168s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 168s Selecting previously unselected package libtexlua53-5:arm64. 168s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 168s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 168s Selecting previously unselected package libjbig0:arm64. 168s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 168s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 168s Selecting previously unselected package libwebp7:arm64. 168s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 168s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 168s Selecting previously unselected package libtiff6:arm64. 168s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 168s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 168s Selecting previously unselected package libxft2:arm64. 168s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 168s Unpacking libxft2:arm64 (2.3.6-1) ... 168s Selecting previously unselected package libxss1:arm64. 168s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 168s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 168s Selecting previously unselected package libtk8.6:arm64. 168s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 168s Unpacking libtk8.6:arm64 (8.6.13-2) ... 168s Selecting previously unselected package libxt6:arm64. 168s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_arm64.deb ... 168s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 168s Selecting previously unselected package libxmu6:arm64. 168s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 168s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 168s Selecting previously unselected package libxpm4:arm64. 168s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 168s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 168s Selecting previously unselected package libxaw7:arm64. 168s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 168s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 168s Selecting previously unselected package libxi6:arm64. 168s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 168s Unpacking libxi6:arm64 (2:1.8.1-1) ... 168s Selecting previously unselected package libzzip-0-13:arm64. 169s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 169s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 169s Selecting previously unselected package node-bootstrap-sass. 169s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 169s Unpacking node-bootstrap-sass (3.4.3-2) ... 169s Selecting previously unselected package node-html5shiv. 169s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 169s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 169s Selecting previously unselected package node-normalize.css. 169s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 169s Unpacking node-normalize.css (8.0.1-5) ... 169s Selecting previously unselected package pandoc-data. 169s Preparing to unpack .../136-pandoc-data_3.1.3-1_all.deb ... 169s Unpacking pandoc-data (3.1.3-1) ... 169s Selecting previously unselected package pandoc. 169s Preparing to unpack .../137-pandoc_3.1.3+ds-2_arm64.deb ... 169s Unpacking pandoc (3.1.3+ds-2) ... 170s Selecting previously unselected package pkgconf-bin. 170s Preparing to unpack .../138-pkgconf-bin_1.8.1-2_arm64.deb ... 170s Unpacking pkgconf-bin (1.8.1-2) ... 170s Selecting previously unselected package pkgconf:arm64. 170s Preparing to unpack .../139-pkgconf_1.8.1-2_arm64.deb ... 170s Unpacking pkgconf:arm64 (1.8.1-2) ... 170s Selecting previously unselected package pkg-config:arm64. 171s Preparing to unpack .../140-pkg-config_1.8.1-2_arm64.deb ... 171s Unpacking pkg-config:arm64 (1.8.1-2) ... 171s Selecting previously unselected package zip. 171s Preparing to unpack .../141-zip_3.0-13_arm64.deb ... 171s Unpacking zip (3.0-13) ... 171s Selecting previously unselected package unzip. 171s Preparing to unpack .../142-unzip_6.0-28ubuntu3_arm64.deb ... 171s Unpacking unzip (6.0-28ubuntu3) ... 171s Selecting previously unselected package xdg-utils. 171s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 171s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 171s Selecting previously unselected package r-base-core. 171s Preparing to unpack .../144-r-base-core_4.3.2-1build1_arm64.deb ... 171s Unpacking r-base-core (4.3.2-1build1) ... 172s Selecting previously unselected package liblzma-dev:arm64. 172s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ... 172s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 172s Selecting previously unselected package r-base-dev. 172s Preparing to unpack .../146-r-base-dev_4.3.2-1build1_all.deb ... 172s Unpacking r-base-dev (4.3.2-1build1) ... 172s Selecting previously unselected package pkg-r-autopkgtest. 172s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 172s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 172s Selecting previously unselected package r-bioc-biocgenerics. 172s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 172s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 172s Selecting previously unselected package r-bioc-biobase. 172s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_arm64.deb ... 172s Unpacking r-bioc-biobase (2.62.0-1) ... 172s Selecting previously unselected package r-bioc-s4vectors. 172s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 172s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 172s Selecting previously unselected package r-bioc-iranges. 172s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_arm64.deb ... 172s Unpacking r-bioc-iranges (2.36.0-1) ... 172s Selecting previously unselected package r-cran-dbi. 172s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 172s Unpacking r-cran-dbi (1.2.2-1) ... 172s Selecting previously unselected package r-cran-bit. 172s Preparing to unpack .../153-r-cran-bit_4.0.5-1_arm64.deb ... 172s Unpacking r-cran-bit (4.0.5-1) ... 172s Selecting previously unselected package r-cran-bit64. 172s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_arm64.deb ... 172s Unpacking r-cran-bit64 (4.0.5-1) ... 172s Selecting previously unselected package r-cran-rlang. 172s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_arm64.deb ... 172s Unpacking r-cran-rlang (1.1.3-1) ... 172s Selecting previously unselected package r-cran-cli. 172s Preparing to unpack .../156-r-cran-cli_3.6.2-1_arm64.deb ... 172s Unpacking r-cran-cli (3.6.2-1) ... 172s Selecting previously unselected package r-cran-glue. 172s Preparing to unpack .../157-r-cran-glue_1.7.0-1_arm64.deb ... 172s Unpacking r-cran-glue (1.7.0-1) ... 172s Selecting previously unselected package r-cran-lifecycle. 172s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 172s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 172s Selecting previously unselected package r-cran-vctrs. 172s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_arm64.deb ... 172s Unpacking r-cran-vctrs (0.6.5-1) ... 172s Selecting previously unselected package r-cran-blob. 173s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 173s Unpacking r-cran-blob (1.2.4-1) ... 173s Selecting previously unselected package r-cran-fastmap. 173s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_arm64.deb ... 173s Unpacking r-cran-fastmap (1.1.1-1) ... 173s Selecting previously unselected package r-cran-cachem. 173s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_arm64.deb ... 173s Unpacking r-cran-cachem (1.0.8-1) ... 173s Selecting previously unselected package r-cran-memoise. 173s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 173s Unpacking r-cran-memoise (2.0.1-1) ... 173s Selecting previously unselected package r-cran-pkgconfig. 173s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 173s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 173s Selecting previously unselected package r-cran-plogr. 173s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 173s Unpacking r-cran-plogr (0.2.0-3build1) ... 173s Selecting previously unselected package r-cran-cpp11. 173s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 173s Unpacking r-cran-cpp11 (0.4.7-1) ... 173s Selecting previously unselected package r-cran-rsqlite. 173s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_arm64.deb ... 173s Unpacking r-cran-rsqlite (2.3.4-1) ... 173s Selecting previously unselected package r-cran-curl. 173s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 173s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 173s Selecting previously unselected package r-cran-jsonlite. 173s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 173s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 173s Selecting previously unselected package r-cran-mime. 173s Preparing to unpack .../170-r-cran-mime_0.12-1_arm64.deb ... 173s Unpacking r-cran-mime (0.12-1) ... 173s Selecting previously unselected package r-cran-sys. 173s Preparing to unpack .../171-r-cran-sys_3.4.2-1_arm64.deb ... 173s Unpacking r-cran-sys (3.4.2-1) ... 173s Selecting previously unselected package r-cran-askpass. 173s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_arm64.deb ... 173s Unpacking r-cran-askpass (1.2.0-1) ... 173s Selecting previously unselected package r-cran-openssl. 173s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 173s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 173s Selecting previously unselected package r-cran-r6. 173s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 173s Unpacking r-cran-r6 (2.5.1-1) ... 173s Selecting previously unselected package r-cran-httr. 173s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 173s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 173s Selecting previously unselected package r-cran-png. 173s Preparing to unpack .../176-r-cran-png_0.1-8-1_arm64.deb ... 173s Unpacking r-cran-png (0.1-8-1) ... 173s Selecting previously unselected package r-bioc-zlibbioc. 173s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 173s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 173s Selecting previously unselected package r-bioc-xvector. 173s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_arm64.deb ... 173s Unpacking r-bioc-xvector (0.42.0-1) ... 173s Selecting previously unselected package r-cran-bitops. 173s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_arm64.deb ... 173s Unpacking r-cran-bitops (1.0-7-1) ... 173s Selecting previously unselected package r-cran-rcurl. 173s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 173s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 173s Selecting previously unselected package r-bioc-genomeinfodbdata. 173s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 173s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 174s Selecting previously unselected package r-bioc-genomeinfodb. 174s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 174s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 174s Selecting previously unselected package r-cran-crayon. 174s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 174s Unpacking r-cran-crayon (1.5.2-1) ... 174s Selecting previously unselected package r-bioc-biostrings. 174s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 174s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 174s Selecting previously unselected package r-bioc-keggrest. 174s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 174s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 174s Selecting previously unselected package r-bioc-annotationdbi. 174s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 174s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 174s Selecting previously unselected package r-cran-xml. 174s Preparing to unpack .../187-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 174s Unpacking r-cran-xml (3.99-0.16.1-1) ... 174s Selecting previously unselected package r-cran-xtable. 174s Preparing to unpack .../188-r-cran-xtable_1%3a1.8-4-2_all.deb ... 174s Unpacking r-cran-xtable (1:1.8-4-2) ... 174s Selecting previously unselected package r-bioc-annotate. 174s Preparing to unpack .../189-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 174s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-generics. 174s Preparing to unpack .../190-r-cran-generics_0.1.3-1_all.deb ... 174s Unpacking r-cran-generics (0.1.3-1) ... 174s Selecting previously unselected package r-cran-magrittr. 174s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_arm64.deb ... 174s Unpacking r-cran-magrittr (2.0.3-1) ... 174s Selecting previously unselected package r-cran-fansi. 174s Preparing to unpack .../192-r-cran-fansi_1.0.5-1_arm64.deb ... 174s Unpacking r-cran-fansi (1.0.5-1) ... 174s Selecting previously unselected package r-cran-utf8. 174s Preparing to unpack .../193-r-cran-utf8_1.2.4-1_arm64.deb ... 174s Unpacking r-cran-utf8 (1.2.4-1) ... 174s Selecting previously unselected package r-cran-pillar. 174s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 174s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-tibble. 174s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 174s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 174s Selecting previously unselected package r-cran-withr. 174s Preparing to unpack .../196-r-cran-withr_2.5.0-1_all.deb ... 174s Unpacking r-cran-withr (2.5.0-1) ... 174s Selecting previously unselected package r-cran-tidyselect. 174s Preparing to unpack .../197-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 174s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-dplyr. 174s Preparing to unpack .../198-r-cran-dplyr_1.1.4-1_arm64.deb ... 174s Unpacking r-cran-dplyr (1.1.4-1) ... 175s Selecting previously unselected package r-cran-purrr. 175s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_arm64.deb ... 175s Unpacking r-cran-purrr (1.0.2-1) ... 175s Selecting previously unselected package r-cran-stringi. 175s Preparing to unpack .../200-r-cran-stringi_1.8.3-1_arm64.deb ... 175s Unpacking r-cran-stringi (1.8.3-1) ... 175s Selecting previously unselected package r-cran-stringr. 175s Preparing to unpack .../201-r-cran-stringr_1.5.1-1_all.deb ... 175s Unpacking r-cran-stringr (1.5.1-1) ... 175s Selecting previously unselected package r-cran-tidyr. 175s Preparing to unpack .../202-r-cran-tidyr_1.3.1-1_arm64.deb ... 175s Unpacking r-cran-tidyr (1.3.1-1) ... 175s Selecting previously unselected package r-cran-dbplyr. 175s Preparing to unpack .../203-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 175s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 175s Selecting previously unselected package r-cran-filelock. 175s Preparing to unpack .../204-r-cran-filelock_1.0.3-1_arm64.deb ... 175s Unpacking r-cran-filelock (1.0.3-1) ... 175s Selecting previously unselected package r-bioc-biocfilecache. 175s Preparing to unpack .../205-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 175s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 175s Selecting previously unselected package r-bioc-biocio. 175s Preparing to unpack .../206-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 175s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 175s Selecting previously unselected package r-cran-formatr. 175s Preparing to unpack .../207-r-cran-formatr_1.14-1_all.deb ... 175s Unpacking r-cran-formatr (1.14-1) ... 175s Selecting previously unselected package r-cran-lambda.r. 175s Preparing to unpack .../208-r-cran-lambda.r_1.2.4-2build1_all.deb ... 175s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 175s Selecting previously unselected package r-cran-futile.options. 175s Preparing to unpack .../209-r-cran-futile.options_1.0.1-3build1_all.deb ... 175s Unpacking r-cran-futile.options (1.0.1-3build1) ... 175s Selecting previously unselected package r-cran-futile.logger. 175s Preparing to unpack .../210-r-cran-futile.logger_1.4.3-4build1_all.deb ... 175s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 175s Selecting previously unselected package r-cran-snow. 175s Preparing to unpack .../211-r-cran-snow_1%3a0.4.4-2_all.deb ... 175s Unpacking r-cran-snow (1:0.4.4-2) ... 175s Selecting previously unselected package r-cran-codetools. 175s Preparing to unpack .../212-r-cran-codetools_0.2-19-1_all.deb ... 175s Unpacking r-cran-codetools (0.2-19-1) ... 175s Selecting previously unselected package r-cran-bh. 175s Preparing to unpack .../213-r-cran-bh_1.84.0-1_all.deb ... 175s Unpacking r-cran-bh (1.84.0-1) ... 175s Selecting previously unselected package r-bioc-biocparallel. 175s Preparing to unpack .../214-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 175s Unpacking r-bioc-biocparallel (1.36.0-1) ... 175s Selecting previously unselected package r-cran-base64enc. 175s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_arm64.deb ... 175s Unpacking r-cran-base64enc (0.1-3-3) ... 175s Selecting previously unselected package r-cran-digest. 175s Preparing to unpack .../216-r-cran-digest_0.6.34-1_arm64.deb ... 175s Unpacking r-cran-digest (0.6.34-1) ... 176s Selecting previously unselected package r-cran-ellipsis. 176s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_arm64.deb ... 176s Unpacking r-cran-ellipsis (0.3.2-2) ... 176s Selecting previously unselected package r-cran-htmltools. 176s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_arm64.deb ... 176s Unpacking r-cran-htmltools (0.5.7-1) ... 176s Selecting previously unselected package r-cran-evaluate. 176s Preparing to unpack .../219-r-cran-evaluate_0.23-1_all.deb ... 176s Unpacking r-cran-evaluate (0.23-1) ... 176s Selecting previously unselected package r-cran-xfun. 176s Preparing to unpack .../220-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 176s Unpacking r-cran-xfun (0.41+dfsg-1) ... 176s Selecting previously unselected package r-cran-highr. 176s Preparing to unpack .../221-r-cran-highr_0.10+dfsg-1_all.deb ... 176s Unpacking r-cran-highr (0.10+dfsg-1) ... 176s Selecting previously unselected package r-cran-yaml. 176s Preparing to unpack .../222-r-cran-yaml_2.3.8-1_arm64.deb ... 176s Unpacking r-cran-yaml (2.3.8-1) ... 176s Selecting previously unselected package libjs-mathjax. 176s Preparing to unpack .../223-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 176s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 176s Selecting previously unselected package r-cran-knitr. 176s Preparing to unpack .../224-r-cran-knitr_1.45+dfsg-1_all.deb ... 176s Unpacking r-cran-knitr (1.45+dfsg-1) ... 177s Selecting previously unselected package r-cran-jquerylib. 177s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 177s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 177s Selecting previously unselected package r-cran-fs. 177s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 177s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 177s Selecting previously unselected package r-cran-rappdirs. 177s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_arm64.deb ... 177s Unpacking r-cran-rappdirs (0.3.3-1) ... 177s Selecting previously unselected package r-cran-sass. 177s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 177s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 177s Selecting previously unselected package r-cran-bslib. 177s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 177s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 177s Selecting previously unselected package r-cran-fontawesome. 177s Preparing to unpack .../230-r-cran-fontawesome_0.5.2-1_all.deb ... 177s Unpacking r-cran-fontawesome (0.5.2-1) ... 177s Selecting previously unselected package r-cran-tinytex. 177s Preparing to unpack .../231-r-cran-tinytex_0.49-1_all.deb ... 177s Unpacking r-cran-tinytex (0.49-1) ... 177s Selecting previously unselected package libjs-modernizr. 177s Preparing to unpack .../232-libjs-modernizr_2.6.2+ds1-5_all.deb ... 177s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 177s Selecting previously unselected package r-cran-littler. 177s Preparing to unpack .../233-r-cran-littler_0.3.19-1_arm64.deb ... 177s Unpacking r-cran-littler (0.3.19-1) ... 177s Selecting previously unselected package r-cran-pkgkitten. 177s Preparing to unpack .../234-r-cran-pkgkitten_0.2.3-1_all.deb ... 177s Unpacking r-cran-pkgkitten (0.2.3-1) ... 177s Selecting previously unselected package r-cran-rcpp. 177s Preparing to unpack .../235-r-cran-rcpp_1.0.12-1_arm64.deb ... 177s Unpacking r-cran-rcpp (1.0.12-1) ... 177s Selecting previously unselected package r-cran-later. 177s Preparing to unpack .../236-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 177s Unpacking r-cran-later (1.3.2+dfsg-1) ... 177s Selecting previously unselected package r-cran-promises. 177s Preparing to unpack .../237-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 177s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 177s Selecting previously unselected package r-cran-httpuv. 177s Preparing to unpack .../238-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 177s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 177s Selecting previously unselected package r-cran-sourcetools. 177s Preparing to unpack .../239-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 177s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 177s Selecting previously unselected package r-cran-commonmark. 177s Preparing to unpack .../240-r-cran-commonmark_1.9.1-1_arm64.deb ... 177s Unpacking r-cran-commonmark (1.9.1-1) ... 177s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 177s Preparing to unpack .../241-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 177s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 177s Selecting previously unselected package r-cran-shiny. 177s Preparing to unpack .../242-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 177s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 178s Selecting previously unselected package r-cran-rmarkdown. 178s Preparing to unpack .../243-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 178s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 178s Selecting previously unselected package r-cran-bookdown. 178s Preparing to unpack .../244-r-cran-bookdown_0.37+dfsg-1_all.deb ... 178s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 178s Selecting previously unselected package r-cran-biocmanager. 178s Preparing to unpack .../245-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 178s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 178s Selecting previously unselected package tex-common. 178s Preparing to unpack .../246-tex-common_6.18_all.deb ... 178s Unpacking tex-common (6.18) ... 178s Selecting previously unselected package t1utils. 178s Preparing to unpack .../247-t1utils_1.41-4build2_arm64.deb ... 178s Unpacking t1utils (1.41-4build2) ... 178s Selecting previously unselected package texlive-binaries. 178s Preparing to unpack .../248-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 178s Unpacking texlive-binaries (2023.20230311.66589-9) ... 178s Selecting previously unselected package texlive-base. 178s Preparing to unpack .../249-texlive-base_2023.20240207-1_all.deb ... 178s Unpacking texlive-base (2023.20240207-1) ... 179s Selecting previously unselected package texlive-latex-base. 179s Preparing to unpack .../250-texlive-latex-base_2023.20240207-1_all.deb ... 179s Unpacking texlive-latex-base (2023.20240207-1) ... 179s Selecting previously unselected package texlive-bibtex-extra. 179s Preparing to unpack .../251-texlive-bibtex-extra_2023.20240207-1_all.deb ... 179s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 182s Selecting previously unselected package r-bioc-biocstyle. 182s Preparing to unpack .../252-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 182s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 182s Selecting previously unselected package r-cran-hms. 182s Preparing to unpack .../253-r-cran-hms_1.1.3-1_all.deb ... 182s Unpacking r-cran-hms (1.1.3-1) ... 182s Selecting previously unselected package r-cran-prettyunits. 182s Preparing to unpack .../254-r-cran-prettyunits_1.2.0-1_all.deb ... 182s Unpacking r-cran-prettyunits (1.2.0-1) ... 182s Selecting previously unselected package r-cran-progress. 182s Preparing to unpack .../255-r-cran-progress_1.2.3-1_all.deb ... 182s Unpacking r-cran-progress (1.2.3-1) ... 182s Selecting previously unselected package r-cran-xml2. 183s Preparing to unpack .../256-r-cran-xml2_1.3.6-1_arm64.deb ... 183s Unpacking r-cran-xml2 (1.3.6-1) ... 183s Selecting previously unselected package r-bioc-biomart. 183s Preparing to unpack .../257-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 183s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 183s Selecting previously unselected package r-bioc-genomicranges. 183s Preparing to unpack .../258-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 183s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 183s Selecting previously unselected package r-bioc-rhtslib. 183s Preparing to unpack .../259-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 183s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 183s Selecting previously unselected package r-bioc-rsamtools. 183s Preparing to unpack .../260-r-bioc-rsamtools_2.18.0+dfsg-1build1_arm64.deb ... 183s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 183s Selecting previously unselected package r-cran-matrixstats. 183s Preparing to unpack .../261-r-cran-matrixstats_1.2.0-1_arm64.deb ... 183s Unpacking r-cran-matrixstats (1.2.0-1) ... 183s Selecting previously unselected package r-bioc-matrixgenerics. 183s Preparing to unpack .../262-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 183s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 183s Selecting previously unselected package r-cran-lattice. 183s Preparing to unpack .../263-r-cran-lattice_0.22-5-1_arm64.deb ... 183s Unpacking r-cran-lattice (0.22-5-1) ... 183s Selecting previously unselected package r-cran-matrix. 183s Preparing to unpack .../264-r-cran-matrix_1.6-5-1_arm64.deb ... 183s Unpacking r-cran-matrix (1.6-5-1) ... 183s Selecting previously unselected package r-cran-abind. 183s Preparing to unpack .../265-r-cran-abind_1.4-5-2_all.deb ... 183s Unpacking r-cran-abind (1.4-5-2) ... 183s Selecting previously unselected package r-bioc-s4arrays. 183s Preparing to unpack .../266-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 183s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 183s Selecting previously unselected package r-bioc-sparsearray. 183s Preparing to unpack .../267-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 183s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 183s Selecting previously unselected package r-bioc-delayedarray. 183s Preparing to unpack .../268-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 183s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 183s Selecting previously unselected package r-bioc-summarizedexperiment. 183s Preparing to unpack .../269-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 183s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 183s Selecting previously unselected package r-bioc-genomicalignments. 183s Preparing to unpack .../270-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 183s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 183s Selecting previously unselected package r-cran-rjson. 183s Preparing to unpack .../271-r-cran-rjson_0.2.21-1_arm64.deb ... 183s Unpacking r-cran-rjson (0.2.21-1) ... 183s Selecting previously unselected package r-cran-restfulr. 184s Preparing to unpack .../272-r-cran-restfulr_0.0.15-1_arm64.deb ... 184s Unpacking r-cran-restfulr (0.0.15-1) ... 184s Selecting previously unselected package r-bioc-rtracklayer. 184s Preparing to unpack .../273-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 184s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 184s Selecting previously unselected package r-bioc-bsgenome. 184s Preparing to unpack .../274-r-bioc-bsgenome_1.70.2-1_all.deb ... 184s Unpacking r-bioc-bsgenome (1.70.2-1) ... 184s Selecting previously unselected package r-cran-survival. 184s Preparing to unpack .../275-r-cran-survival_3.5-8-1_arm64.deb ... 184s Unpacking r-cran-survival (3.5-8-1) ... 184s Selecting previously unselected package r-bioc-genefilter. 184s Preparing to unpack .../276-r-bioc-genefilter_1.84.0-1_arm64.deb ... 184s Unpacking r-bioc-genefilter (1.84.0-1) ... 184s Selecting previously unselected package r-bioc-genomicfeatures. 184s Preparing to unpack .../277-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 184s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 184s Selecting previously unselected package r-bioc-variantannotation. 184s Preparing to unpack .../278-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 184s Unpacking r-bioc-variantannotation (1.48.1-1) ... 184s Selecting previously unselected package r-bioc-genomicfiles. 184s Preparing to unpack .../279-r-bioc-genomicfiles_1.38.0+dfsg-1_all.deb ... 184s Unpacking r-bioc-genomicfiles (1.38.0+dfsg-1) ... 184s Selecting previously unselected package r-bioc-snpstats. 184s Preparing to unpack .../280-r-bioc-snpstats_1.52.0+dfsg-1_arm64.deb ... 184s Unpacking r-bioc-snpstats (1.52.0+dfsg-1) ... 184s Selecting previously unselected package r-cran-runit. 184s Preparing to unpack .../281-r-cran-runit_0.4.32-3_all.deb ... 184s Unpacking r-cran-runit (0.4.32-3) ... 184s Selecting previously unselected package autopkgtest-satdep. 184s Preparing to unpack .../282-1-autopkgtest-satdep.deb ... 184s Unpacking autopkgtest-satdep (0) ... 184s Setting up libjs-json (0~20221030+~1.0.8-1) ... 184s Setting up javascript-common (11+nmu1) ... 184s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 184s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 184s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 184s Setting up libpaper1:arm64 (1.1.29) ... 185s 185s Creating config file /etc/papersize with new version 185s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 185s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 185s Setting up libxpm4:arm64 (1:3.5.17-1) ... 185s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 185s Setting up libxi6:arm64 (2:1.8.1-1) ... 185s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 185s Setting up libdatrie1:arm64 (0.2.13-3) 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Processing triggers for man-db (2.12.0-3) ... 193s Processing triggers for install-info (7.1-3) ... 193s Processing triggers for libc-bin (2.39-0ubuntu2) ... 193s Processing triggers for tex-common (6.18) ... 194s Running updmap-sys. This may take some time... done. 194s Running mktexlsr /var/lib/texmf ... done. 194s Building format(s) --all. 234s This may take some time... done. 248s (Reading database ... 124533 files and directories currently installed.) 248s Removing autopkgtest-satdep (0) ... 249s autopkgtest [13:46:19]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 249s autopkgtest [13:46:19]: test pkg-r-autopkgtest: [----------------------- 249s Test: Try to load the R library GenomicFiles 250s 250s R version 4.3.2 (2023-10-31) -- "Eye Holes" 250s Copyright (C) 2023 The R Foundation for Statistical Computing 250s Platform: aarch64-unknown-linux-gnu (64-bit) 250s 250s R is free software and comes with ABSOLUTELY NO WARRANTY. 250s You are welcome to redistribute it under certain conditions. 250s Type 'license()' or 'licence()' for distribution details. 250s 250s R is a collaborative project with many contributors. 250s Type 'contributors()' for more information and 250s 'citation()' on how to cite R or R packages in publications. 250s 250s Type 'demo()' for some demos, 'help()' for on-line help, or 250s 'help.start()' for an HTML browser interface to help. 250s Type 'q()' to quit R. 250s 250s > library('GenomicFiles') 250s Loading required package: BiocGenerics 250s 250s Attaching package: ‘BiocGenerics’ 250s 250s The following objects are masked from ‘package:stats’: 250s 250s IQR, mad, sd, var, xtabs 250s 250s The following objects are masked from ‘package:base’: 250s 250s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 250s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 250s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 250s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 250s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 250s table, tapply, union, unique, unsplit, which.max, which.min 250s 250s Loading required package: MatrixGenerics 250s Loading required package: matrixStats 250s 250s Attaching package: ‘MatrixGenerics’ 250s 250s The following objects are masked from ‘package:matrixStats’: 250s 250s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 250s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 250s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 250s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 250s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 250s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 250s colWeightedMeans, colWeightedMedians, colWeightedSds, 250s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 250s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 250s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 250s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 250s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 250s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 250s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 250s rowWeightedSds, rowWeightedVars 250s 250s Loading required package: GenomicRanges 250s Loading required package: stats4 250s Loading required package: S4Vectors 251s 251s Attaching package: ‘S4Vectors’ 251s 251s The following object is masked from ‘package:utils’: 251s 251s findMatches 251s 251s The following objects are masked from ‘package:base’: 251s 251s expand.grid, I, unname 251s 251s Loading required package: IRanges 251s Loading required package: GenomeInfoDb 252s Loading required package: SummarizedExperiment 252s Loading required package: Biobase 253s Welcome to Bioconductor 253s 253s Vignettes contain introductory material; view with 253s 'browseVignettes()'. To cite Bioconductor, see 253s 'citation("Biobase")', and for packages 'citation("pkgname")'. 253s 253s 253s Attaching package: ‘Biobase’ 253s 253s The following object is masked from ‘package:MatrixGenerics’: 253s 253s rowMedians 253s 253s The following objects are masked from ‘package:matrixStats’: 253s 253s anyMissing, rowMedians 253s 255s Loading required package: BiocParallel 255s Loading required package: Rsamtools 255s Loading required package: Biostrings 255s Loading required package: XVector 256s 256s Attaching package: ‘Biostrings’ 256s 256s The following object is masked from ‘package:base’: 256s 256s strsplit 256s 256s Loading required package: rtracklayer 261s > 261s > 261s Warning message: 261s package ‘Rsamtools’ was built under R version 4.3.3 262s Other tests are currently unsupported! 262s They will be progressively added. 262s autopkgtest [13:46:32]: test pkg-r-autopkgtest: -----------------------] 263s autopkgtest [13:46:33]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 263s pkg-r-autopkgtest PASS 263s autopkgtest [13:46:33]: @@@@@@@@@@@@@@@@@@@@ summary 263s pkg-r-autopkgtest PASS 274s Creating nova instance adt-noble-arm64-r-bioc-genomicfiles-20240316-134209-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...