0s autopkgtest [17:31:27]: starting date and time: 2024-03-16 17:31:27+0000 0s autopkgtest [17:31:27]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:31:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.n5gq05uz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-genomicfeatures --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-11.secgroup --name adt-noble-arm64-r-bioc-genomicfeatures-20240316-173126-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 104s autopkgtest [17:33:11]: testbed dpkg architecture: arm64 105s autopkgtest [17:33:12]: testbed apt version: 2.7.12 105s autopkgtest [17:33:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 105s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 106s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 106s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 106s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 106s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 106s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 106s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 106s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 106s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 106s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 106s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 106s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 106s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 108s Fetched 9060 kB in 2s (4785 kB/s) 108s Reading package lists... 111s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s Calculating upgrade... 114s The following packages will be REMOVED: 114s libglib2.0-0 libssl3 114s The following NEW packages will be installed: 114s libglib2.0-0t64 libssl3t64 xdg-user-dirs 114s The following packages have been kept back: 114s curl 114s The following packages will be upgraded: 114s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 114s ubuntu-minimal ubuntu-standard 114s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 114s Need to get 4613 kB of archives. 114s After this operation, 211 kB of additional disk space will be used. 114s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 114s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 114s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 114s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 114s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 114s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 114s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 114s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 114s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 114s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 115s Fetched 4613 kB in 1s (6309 kB/s) 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 115s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 115s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 116s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 116s udisks2 depends on libglib2.0-0 (>= 2.77.0). 116s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 116s python3-gi depends on libglib2.0-0 (>= 2.77.0). 116s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 116s netplan.io depends on libglib2.0-0 (>= 2.70.0). 116s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 116s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 116s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 116s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 116s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 116s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 116s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 116s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 116s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 116s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 116s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 116s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 116s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 116s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 116s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 116s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 116s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 116s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 116s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 116s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 116s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 116s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 116s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 116s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 116s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 116s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 116s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 116s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 116s fwupd depends on libglib2.0-0 (>= 2.79.0). 116s bolt depends on libglib2.0-0 (>= 2.56.0). 116s 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 116s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 116s Selecting previously unselected package libglib2.0-0t64:arm64. 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 116s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 116s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 116s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 116s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 117s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 117s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 117s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 117s wget depends on libssl3 (>= 3.0.0). 117s u-boot-tools depends on libssl3 (>= 3.0.0). 117s tnftp depends on libssl3 (>= 3.0.0). 117s tcpdump depends on libssl3 (>= 3.0.0). 117s systemd-resolved depends on libssl3 (>= 3.0.0). 117s systemd depends on libssl3 (>= 3.0.0). 117s sudo depends on libssl3 (>= 3.0.0). 117s sbsigntool depends on libssl3 (>= 3.0.0). 117s rsync depends on libssl3 (>= 3.0.0). 117s python3-cryptography depends on libssl3 (>= 3.0.0). 117s openssh-server depends on libssl3 (>= 3.0.10). 117s openssh-client depends on libssl3 (>= 3.0.10). 117s mtd-utils depends on libssl3 (>= 3.0.0). 117s mokutil depends on libssl3 (>= 3.0.0). 117s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 117s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 117s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 117s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 117s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 117s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 117s libnvme1 depends on libssl3 (>= 3.0.0). 117s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 117s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 117s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 117s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 117s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 117s kmod depends on libssl3 (>= 3.0.0). 117s dhcpcd-base depends on libssl3 (>= 3.0.0). 117s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 117s 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 117s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 117s Selecting previously unselected package libssl3t64:arm64. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 117s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 117s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 117s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 117s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 118s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 118s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 118s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 118s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 118s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 118s Unpacking ubuntu-minimal (1.536) over (1.535) ... 118s Selecting previously unselected package xdg-user-dirs. 119s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 119s Unpacking xdg-user-dirs (0.18-1) ... 119s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 119s Unpacking ubuntu-standard (1.536) over (1.535) ... 119s Setting up ubuntu-minimal (1.536) ... 119s Setting up xdg-user-dirs (0.18-1) ... 119s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 119s Setting up libtirpc-common (1.3.4+ds-1.1) ... 119s Setting up ubuntu-standard (1.536) ... 119s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 119s No schema files found: doing nothing. 120s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 120s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 120s Setting up openssl (3.0.13-0ubuntu1) ... 120s Setting up readline-common (8.2-3.1) ... 120s Processing triggers for man-db (2.12.0-3) ... 121s Processing triggers for install-info (7.1-3) ... 121s Processing triggers for libc-bin (2.39-0ubuntu2) ... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 123s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 123s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 124s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 124s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 125s Reading package lists... 125s Reading package lists... 125s Building dependency tree... 125s Reading state information... 126s Calculating upgrade... 126s The following packages have been kept back: 126s curl 126s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 130s autopkgtest [17:33:37]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 130s autopkgtest [17:33:37]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicfeatures 133s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfeatures 1.54.1+dfsg-1 (dsc) [2513 B] 133s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfeatures 1.54.1+dfsg-1 (tar) [572 kB] 133s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfeatures 1.54.1+dfsg-1 (diff) [13.0 kB] 133s gpgv: Signature made Fri Dec 1 02:52:50 2023 UTC 133s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 133s gpgv: issuer "plessy@debian.org" 133s gpgv: Can't check signature: No public key 133s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfeatures_1.54.1+dfsg-1.dsc: no acceptable signature found 134s autopkgtest [17:33:41]: testing package r-bioc-genomicfeatures version 1.54.1+dfsg-1 134s autopkgtest [17:33:41]: build not needed 137s autopkgtest [17:33:44]: test pkg-r-autopkgtest: preparing testbed 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Starting pkgProblemResolver with broken count: 0 139s Starting 2 pkgProblemResolver with broken count: 0 139s Done 140s The following additional packages will be installed: 140s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 140s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 140s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 140s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 140s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 140s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 140s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 140s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 140s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 140s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 140s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 140s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 140s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 140s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 140s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 140s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 140s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 140s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 140s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 140s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 140s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 140s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 140s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 140s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 140s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 140s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 140s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 140s libzzip-0-13 linux-libc-dev node-bootstrap-sass node-html5shiv 140s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 140s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi 140s r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache 140s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 140s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 140s r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 140s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 140s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-org.hs.eg.db 140s r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 140s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 140s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 140s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 140s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 140s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 140s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 140s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 140s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 140s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 140s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 140s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 140s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 140s r-cran-magrittr r-cran-markdown r-cran-matrix r-cran-matrixstats 140s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 140s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 140s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp 140s r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 140s r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny r-cran-snow 140s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble 140s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 140s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 140s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 140s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 140s zlib1g-dev 140s Suggested packages: 140s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 140s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 140s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 140s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 140s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 140s libboost-context1.83-dev libboost-contract1.83-dev 140s libboost-coroutine1.83-dev libboost-date-time1.83-dev 140s libboost-exception1.83-dev libboost-fiber1.83-dev 140s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 140s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 140s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 140s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 140s libboost-numpy1.83-dev libboost-program-options1.83-dev 140s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 140s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 140s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 140s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 140s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 140s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 140s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 140s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 140s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 140s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 140s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 140s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 140s r-bioc-go.db r-bioc-graph r-cran-testthat r-bioc-all r-bioc-affy 140s r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 140s r-bioc-variantannotation r-bioc-shortread r-cran-batchtools 140s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-hdf5array 140s r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-ggbio 140s r-bioc-gviz r-bioc-annotationhub r-cran-r.utils r-bioc-edger r-bioc-dexseq 140s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff 140s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-getopt 140s r-cran-formattable r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins 140s r-cran-scales r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline 140s r-cran-rmpi r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio 140s r-cran-callr r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm 140s r-cran-zoo debhelper ghostscript gv | postscript-viewer perl-tk xpdf 140s | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc 140s wp2latex 140s Recommended packages: 140s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 140s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 140s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 140s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 140s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 140s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 140s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 140s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 140s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo 140s r-cran-cairo r-cran-ragg r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf 140s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 140s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 140s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 140s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 140s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 140s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 140s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 140s The following packages will be REMOVED: 140s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 140s The following NEW packages will be installed: 140s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 140s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 140s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 140s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 140s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 140s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 140s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 140s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 140s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 140s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 140s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 140s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 140s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 140s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 140s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 140s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 140s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 140s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 140s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 140s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 140s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 140s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 140s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 140s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 140s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 140s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 140s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 140s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 140s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 140s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 140s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 140s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 140s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 140s r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 140s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 140s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 140s r-bioc-org.hs.eg.db r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 140s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 140s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 140s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 140s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 140s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 140s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 140s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 140s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 140s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 140s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 140s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 140s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 140s r-cran-magrittr r-cran-markdown r-cran-matrix r-cran-matrixstats 140s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 140s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 140s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp 140s r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 140s r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny r-cran-snow 140s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble 140s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 140s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 140s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 140s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 140s zlib1g-dev 140s The following packages will be upgraded: 140s curl 140s 1 upgraded, 287 newly installed, 5 to remove and 0 not upgraded. 140s Need to get 489 MB/489 MB of archives. 140s After this operation, 1729 MB of additional disk space will be used. 140s Get:1 /tmp/autopkgtest.dRnr9Y/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [828 B] 140s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 140s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 141s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 141s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 141s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 141s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 141s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 141s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 141s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 141s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 141s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 141s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 141s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 141s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 141s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 141s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 141s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 141s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 141s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 141s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 141s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 141s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 141s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 141s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 141s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 141s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 141s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 141s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 141s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 141s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 142s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 142s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 142s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 142s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 142s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 143s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 143s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 143s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 143s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 143s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 143s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 143s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 143s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 143s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 143s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 143s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 143s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 143s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 143s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 143s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 143s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 143s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 143s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 143s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 143s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 143s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 143s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 143s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 143s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 143s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 143s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 143s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 143s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 144s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 144s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 144s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 144s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 144s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 144s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 144s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 144s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 144s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 144s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 144s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 144s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 144s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 144s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 144s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 144s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 144s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 144s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 144s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 144s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 144s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 144s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 144s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 144s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 144s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 144s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 144s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 144s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 144s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 144s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 144s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 144s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 144s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 144s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 144s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 144s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 144s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 145s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 145s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 145s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 145s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 145s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 145s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 145s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 145s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 145s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 145s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 145s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 145s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 145s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 145s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 145s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 145s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 145s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 145s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 145s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 145s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 145s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 145s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 145s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 145s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 145s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 145s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 145s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 145s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 145s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 145s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 145s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 145s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 145s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 145s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 145s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 146s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 146s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 146s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 146s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 146s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 146s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 146s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 146s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 146s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 146s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 146s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 146s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 146s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 146s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 146s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 147s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 147s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 147s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 147s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 147s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 147s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 147s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 147s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 147s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 147s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 147s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 147s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 147s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 147s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 147s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 147s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 147s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 147s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 147s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 147s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 147s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 147s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 147s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 147s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 147s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 147s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 147s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 147s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 147s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 147s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 147s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 147s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 147s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 147s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 147s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 147s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 147s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 148s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 148s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 148s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 148s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 148s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 148s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 148s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 148s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 148s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 148s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 148s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 148s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 148s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 148s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 148s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 148s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 149s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 149s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 149s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 149s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 149s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 149s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 149s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 149s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 149s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 149s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 149s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 149s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 149s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 149s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 149s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 149s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 149s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 149s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 149s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 149s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 149s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 149s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 149s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 149s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 149s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 149s Get:230 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 149s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 150s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 150s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 150s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 150s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 150s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 150s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 150s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 150s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 150s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 150s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 150s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 150s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 150s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 150s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 150s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 150s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 150s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 150s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 150s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 150s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 150s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 150s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 150s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 150s Get:255 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 150s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 150s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 151s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 151s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 154s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 154s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 154s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 154s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 154s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 154s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 154s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 154s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 154s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 154s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 154s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 154s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 154s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 154s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 154s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 154s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 154s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 154s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 154s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 154s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 154s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 154s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 155s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 155s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 155s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 155s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 155s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 157s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 157s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 159s Preconfiguring packages ... 159s Fetched 489 MB in 17s (28.5 MB/s) 159s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 159s wget depends on libpsl5 (>= 0.16.0). 159s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 159s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 159s 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 159s Removing libpsl5:arm64 (0.21.2-1build1) ... 159s Selecting previously unselected package libpsl5t64:arm64. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 159s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 159s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 159s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 159s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 159s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 159s Selecting previously unselected package libcurl4t64:arm64. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 159s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 159s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 159s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 159s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 159s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 159s 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 159s Removing libpng16-16:arm64 (1.6.43-1) ... 159s Selecting previously unselected package libpng16-16t64:arm64. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 159s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 159s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 159s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 159s parted depends on libreadline8 (>= 6.0). 159s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 159s gpgsm depends on libreadline8 (>= 6.0). 159s gpgconf depends on libreadline8 (>= 6.0). 159s gpg depends on libreadline8 (>= 6.0). 159s gawk depends on libreadline8 (>= 6.0). 159s fdisk depends on libreadline8 (>= 6.0). 159s 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 159s Removing libreadline8:arm64 (8.2-3) ... 159s Selecting previously unselected package libreadline8t64:arm64. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 159s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 159s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 159s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 159s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 159s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 159s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 159s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 159s lsof depends on libtirpc3 (>= 1.0.2). 159s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 159s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 159s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 159s iproute2 depends on libtirpc3 (>= 1.0.2). 159s 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 159s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 159s Selecting previously unselected package libtirpc3t64:arm64. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 159s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 159s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 159s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 159s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 160s Selecting previously unselected package libc-dev-bin. 160s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 160s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 160s Selecting previously unselected package linux-libc-dev:arm64. 160s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 160s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 160s Selecting previously unselected package libcrypt-dev:arm64. 160s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 160s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 160s Selecting previously unselected package libtirpc-dev:arm64. 160s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 160s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 160s Selecting previously unselected package libnsl-dev:arm64. 160s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 160s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 160s Selecting previously unselected package rpcsvc-proto. 160s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 160s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 160s Selecting previously unselected package libc6-dev:arm64. 160s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 160s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 160s Selecting previously unselected package libisl23:arm64. 160s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 160s Unpacking libisl23:arm64 (0.26-3) ... 160s Selecting previously unselected package libmpc3:arm64. 160s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 160s Unpacking libmpc3:arm64 (1.3.1-1) ... 160s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 160s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 160s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package cpp-13. 160s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 160s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package cpp-aarch64-linux-gnu. 160s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 160s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 160s Selecting previously unselected package cpp. 160s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 160s Unpacking cpp (4:13.2.0-7ubuntu1) ... 160s Selecting previously unselected package libcc1-0:arm64. 160s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 160s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 160s Selecting previously unselected package libgomp1:arm64. 160s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 160s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 160s Selecting previously unselected package libitm1:arm64. 160s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 160s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 160s Selecting previously unselected package libatomic1:arm64. 161s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 161s Selecting previously unselected package libasan8:arm64. 161s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 161s Selecting previously unselected package liblsan0:arm64. 161s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 161s Selecting previously unselected package libtsan2:arm64. 161s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 161s Selecting previously unselected package libubsan1:arm64. 161s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 161s Selecting previously unselected package libhwasan0:arm64. 161s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 161s Selecting previously unselected package libgcc-13-dev:arm64. 161s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 161s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 161s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 161s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package gcc-13. 161s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 161s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package gcc-aarch64-linux-gnu. 161s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 161s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 161s Selecting previously unselected package gcc. 161s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 161s Unpacking gcc (4:13.2.0-7ubuntu1) ... 161s Selecting previously unselected package libstdc++-13-dev:arm64. 161s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 161s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 162s Selecting previously unselected package g++-13-aarch64-linux-gnu. 162s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 162s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 162s Selecting previously unselected package g++-13. 162s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 162s Unpacking g++-13 (13.2.0-17ubuntu2) ... 162s Selecting previously unselected package g++-aarch64-linux-gnu. 162s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 162s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 162s Selecting previously unselected package g++. 162s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 162s Unpacking g++ (4:13.2.0-7ubuntu1) ... 162s Selecting previously unselected package build-essential. 162s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 162s Unpacking build-essential (12.10ubuntu1) ... 162s Selecting previously unselected package dctrl-tools. 162s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 162s Unpacking dctrl-tools (2.24-3build2) ... 162s Selecting previously unselected package fonts-dejavu-mono. 162s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 162s Unpacking fonts-dejavu-mono (2.37-8) ... 162s Selecting previously unselected package fonts-dejavu-core. 162s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 162s Unpacking fonts-dejavu-core (2.37-8) ... 162s Selecting previously unselected package fontconfig-config. 162s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 162s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 162s Selecting previously unselected package libfontconfig1:arm64. 162s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 162s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 162s Selecting previously unselected package fontconfig. 162s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 162s Unpacking fontconfig (2.15.0-1ubuntu1) ... 163s Selecting previously unselected package fonts-font-awesome. 163s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 163s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 163s Selecting previously unselected package fonts-glyphicons-halflings. 163s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 163s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 163s Selecting previously unselected package fonts-lmodern. 163s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 163s Unpacking fonts-lmodern (2.005-1) ... 163s Selecting previously unselected package fonts-mathjax. 163s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 163s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 163s Selecting previously unselected package libgfortran5:arm64. 163s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libgfortran-13-dev:arm64. 163s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 163s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package gfortran-13. 163s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package gfortran-aarch64-linux-gnu. 163s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 163s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 163s Selecting previously unselected package gfortran. 163s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 163s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 163s Selecting previously unselected package icu-devtools. 163s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 163s Unpacking icu-devtools (74.2-1ubuntu1) ... 163s Selecting previously unselected package javascript-common. 163s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 163s Unpacking javascript-common (11+nmu1) ... 163s Selecting previously unselected package libio-string-perl. 163s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 163s Unpacking libio-string-perl (1.08-4) ... 163s Selecting previously unselected package liblatex-tounicode-perl. 163s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 163s Unpacking liblatex-tounicode-perl (0.54-2) ... 163s Selecting previously unselected package libbibtex-parser-perl. 163s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 163s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 164s Selecting previously unselected package libblas3:arm64. 164s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 164s Unpacking libblas3:arm64 (3.12.0-3) ... 164s Selecting previously unselected package libblas-dev:arm64. 164s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 164s Unpacking libblas-dev:arm64 (3.12.0-3) ... 164s Selecting previously unselected package libboost1.83-dev:arm64. 164s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 164s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 165s Selecting previously unselected package libboost-dev:arm64. 165s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 165s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 165s Selecting previously unselected package libbz2-dev:arm64. 165s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 165s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 165s Selecting previously unselected package libpixman-1-0:arm64. 165s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 165s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 165s Selecting previously unselected package libxcb-render0:arm64. 165s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 165s Unpacking libxcb-render0:arm64 (1.15-1) ... 165s Selecting previously unselected package libxcb-shm0:arm64. 165s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 165s Unpacking libxcb-shm0:arm64 (1.15-1) ... 165s Selecting previously unselected package libxrender1:arm64. 165s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 165s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 166s Selecting previously unselected package libcairo2:arm64. 166s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 166s Unpacking libcairo2:arm64 (1.18.0-1) ... 166s Selecting previously unselected package libdatrie1:arm64. 166s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 166s Unpacking libdatrie1:arm64 (0.2.13-3) ... 166s Selecting previously unselected package libdeflate0:arm64. 166s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 166s Unpacking libdeflate0:arm64 (1.19-1) ... 166s Selecting previously unselected package libgraphite2-3:arm64. 166s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 166s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 166s Selecting previously unselected package libharfbuzz0b:arm64. 166s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 166s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 166s Selecting previously unselected package x11-common. 166s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 166s Unpacking x11-common (1:7.7+23ubuntu2) ... 166s Selecting previously unselected package libice6:arm64. 166s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 166s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 166s Selecting previously unselected package libicu-dev:arm64. 166s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 166s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 166s Selecting previously unselected package libjpeg-turbo8:arm64. 166s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 166s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 166s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 166s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 166s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 166s Selecting previously unselected package libjpeg8:arm64. 166s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 166s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 166s Selecting previously unselected package libjpeg8-dev:arm64. 166s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 166s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 166s Selecting previously unselected package libjpeg-dev:arm64. 166s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 166s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 166s Selecting previously unselected package libjs-bootstrap. 166s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 166s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 166s Selecting previously unselected package libjs-popper.js. 166s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 166s Unpacking libjs-popper.js (1.16.1+ds-6) ... 166s Selecting previously unselected package libjs-bootstrap4. 166s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 166s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 166s Selecting previously unselected package libjs-d3. 166s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 166s Unpacking libjs-d3 (3.5.17-4) ... 166s Selecting previously unselected package libjs-es5-shim. 167s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 167s Unpacking libjs-es5-shim (4.6.7-2) ... 167s Selecting previously unselected package libjs-highlight.js. 167s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 167s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 167s Selecting previously unselected package libjs-jquery. 167s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 167s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 167s Selecting previously unselected package libjs-jquery-datatables. 167s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 167s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 167s Selecting previously unselected package libjs-sifter.js. 167s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 167s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 167s Selecting previously unselected package libjs-microplugin.js. 167s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 167s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 167s Selecting previously unselected package libjs-jquery-selectize.js. 167s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 167s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 167s Selecting previously unselected package libjs-jquery-ui. 167s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 167s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 167s Selecting previously unselected package libjs-json. 167s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 167s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 167s Selecting previously unselected package libjs-lunr. 167s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 167s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 167s Selecting previously unselected package libjs-prettify. 167s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 167s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 167s Selecting previously unselected package libkpathsea6:arm64. 167s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 167s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 167s Selecting previously unselected package liblapack3:arm64. 167s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 167s Unpacking liblapack3:arm64 (3.12.0-3) ... 167s Selecting previously unselected package liblapack-dev:arm64. 167s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 167s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 167s Selecting previously unselected package liblerc4:arm64. 167s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 167s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 167s Selecting previously unselected package liblua5.4-0:arm64. 167s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 167s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 167s Selecting previously unselected package libncurses-dev:arm64. 167s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 167s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 167s Selecting previously unselected package libthai-data. 167s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 167s Unpacking libthai-data (0.1.29-2) ... 168s Selecting previously unselected package libthai0:arm64. 168s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 168s Unpacking libthai0:arm64 (0.1.29-2) ... 168s Selecting previously unselected package libpango-1.0-0:arm64. 168s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 168s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 168s Selecting previously unselected package libpangoft2-1.0-0:arm64. 168s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 168s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 168s Selecting previously unselected package libpangocairo-1.0-0:arm64. 168s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 168s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 168s Selecting previously unselected package libpaper1:arm64. 168s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 168s Unpacking libpaper1:arm64 (1.1.29) ... 168s Selecting previously unselected package libpaper-utils. 168s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 168s Unpacking libpaper-utils (1.1.29) ... 168s Selecting previously unselected package libpcre2-16-0:arm64. 168s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 168s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 168s Selecting previously unselected package libpcre2-32-0:arm64. 168s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 168s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 168s Selecting previously unselected package libpcre2-posix3:arm64. 168s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 168s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 168s Selecting previously unselected package libpcre2-dev:arm64. 168s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 168s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 168s Selecting previously unselected package libpkgconf3:arm64. 168s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 168s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 168s Selecting previously unselected package zlib1g-dev:arm64. 168s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 168s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 168s Selecting previously unselected package libpng-dev:arm64. 168s Preparing to unpack .../111-libpng-dev_1.6.43-3_arm64.deb ... 168s Unpacking libpng-dev:arm64 (1.6.43-3) ... 168s Selecting previously unselected package libpotrace0:arm64. 168s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 168s Unpacking libpotrace0:arm64 (1.16-2) ... 168s Selecting previously unselected package libptexenc1:arm64. 168s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 168s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 168s Selecting previously unselected package libreadline-dev:arm64. 168s Preparing to unpack .../114-libreadline-dev_8.2-3.1_arm64.deb ... 168s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 169s Selecting previously unselected package libsharpyuv0:arm64. 169s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 169s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 169s Selecting previously unselected package libsm6:arm64. 169s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 169s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 169s Selecting previously unselected package libsynctex2:arm64. 169s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 169s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 169s Selecting previously unselected package libtcl8.6:arm64. 169s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 169s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 169s Selecting previously unselected package libteckit0:arm64. 169s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 169s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 169s Selecting previously unselected package libtexlua53-5:arm64. 169s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 169s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 169s Selecting previously unselected package libjbig0:arm64. 169s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 169s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 169s Selecting previously unselected package libwebp7:arm64. 169s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 169s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 169s Selecting previously unselected package libtiff6:arm64. 169s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 169s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 169s Selecting previously unselected package libxft2:arm64. 169s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 169s Unpacking libxft2:arm64 (2.3.6-1) ... 169s Selecting previously unselected package libxss1:arm64. 169s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 169s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 169s Selecting previously unselected package libtk8.6:arm64. 169s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 169s Unpacking libtk8.6:arm64 (8.6.13-2) ... 169s Selecting previously unselected package libxt6t64:arm64. 169s Preparing to unpack .../127-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 169s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 169s Selecting previously unselected package libxmu6:arm64. 169s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 169s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 169s Selecting previously unselected package libxpm4:arm64. 169s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 169s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 169s Selecting previously unselected package libxaw7:arm64. 169s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 169s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 169s Selecting previously unselected package libxi6:arm64. 169s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 169s Unpacking libxi6:arm64 (2:1.8.1-1) ... 169s Selecting previously unselected package libzzip-0-13:arm64. 169s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 169s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 169s Selecting previously unselected package node-bootstrap-sass. 169s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 169s Unpacking node-bootstrap-sass (3.4.3-2) ... 169s Selecting previously unselected package node-html5shiv. 169s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 169s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 169s Selecting previously unselected package node-normalize.css. 169s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 169s Unpacking node-normalize.css (8.0.1-5) ... 169s Selecting previously unselected package pandoc-data. 169s Preparing to unpack .../136-pandoc-data_3.1.3-1_all.deb ... 169s Unpacking pandoc-data (3.1.3-1) ... 170s Selecting previously unselected package pandoc. 170s Preparing to unpack .../137-pandoc_3.1.3+ds-2_arm64.deb ... 170s Unpacking pandoc (3.1.3+ds-2) ... 170s Selecting previously unselected package pkgconf-bin. 171s Preparing to unpack .../138-pkgconf-bin_1.8.1-2_arm64.deb ... 171s Unpacking pkgconf-bin (1.8.1-2) ... 171s Selecting previously unselected package pkgconf:arm64. 171s Preparing to unpack .../139-pkgconf_1.8.1-2_arm64.deb ... 171s Unpacking pkgconf:arm64 (1.8.1-2) ... 171s Selecting previously unselected package pkg-config:arm64. 171s Preparing to unpack .../140-pkg-config_1.8.1-2_arm64.deb ... 171s Unpacking pkg-config:arm64 (1.8.1-2) ... 171s Selecting previously unselected package zip. 171s Preparing to unpack .../141-zip_3.0-13_arm64.deb ... 171s Unpacking zip (3.0-13) ... 171s Selecting previously unselected package unzip. 171s Preparing to unpack .../142-unzip_6.0-28ubuntu3_arm64.deb ... 171s Unpacking unzip (6.0-28ubuntu3) ... 171s Selecting previously unselected package xdg-utils. 171s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 171s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 171s Selecting previously unselected package r-base-core. 171s Preparing to unpack .../144-r-base-core_4.3.3-2build1_arm64.deb ... 171s Unpacking r-base-core (4.3.3-2build1) ... 171s Selecting previously unselected package liblzma-dev:arm64. 171s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ... 171s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 171s Selecting previously unselected package r-base-dev. 171s Preparing to unpack .../146-r-base-dev_4.3.3-2build1_all.deb ... 171s Unpacking r-base-dev (4.3.3-2build1) ... 171s Selecting previously unselected package pkg-r-autopkgtest. 171s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 171s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 171s Selecting previously unselected package r-bioc-biocgenerics. 171s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 171s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 171s Selecting previously unselected package r-bioc-biobase. 171s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_arm64.deb ... 171s Unpacking r-bioc-biobase (2.62.0-1) ... 171s Selecting previously unselected package r-bioc-s4vectors. 171s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 171s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 171s Selecting previously unselected package r-bioc-iranges. 171s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_arm64.deb ... 171s Unpacking r-bioc-iranges (2.36.0-1) ... 171s Selecting previously unselected package r-cran-dbi. 171s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 171s Unpacking r-cran-dbi (1.2.2-1) ... 171s Selecting previously unselected package r-cran-bit. 171s Preparing to unpack .../153-r-cran-bit_4.0.5-1_arm64.deb ... 171s Unpacking r-cran-bit (4.0.5-1) ... 171s Selecting previously unselected package r-cran-bit64. 171s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_arm64.deb ... 171s Unpacking r-cran-bit64 (4.0.5-1) ... 172s Selecting previously unselected package r-cran-rlang. 172s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_arm64.deb ... 172s Unpacking r-cran-rlang (1.1.3-1) ... 172s Selecting previously unselected package r-cran-cli. 172s Preparing to unpack .../156-r-cran-cli_3.6.2-1_arm64.deb ... 172s Unpacking r-cran-cli (3.6.2-1) ... 172s Selecting previously unselected package r-cran-glue. 172s Preparing to unpack .../157-r-cran-glue_1.7.0-1_arm64.deb ... 172s Unpacking r-cran-glue (1.7.0-1) ... 172s Selecting previously unselected package r-cran-lifecycle. 172s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 172s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 172s Selecting previously unselected package r-cran-vctrs. 172s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_arm64.deb ... 172s Unpacking r-cran-vctrs (0.6.5-1) ... 172s Selecting previously unselected package r-cran-blob. 172s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 172s Unpacking r-cran-blob (1.2.4-1) ... 172s Selecting previously unselected package r-cran-fastmap. 172s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_arm64.deb ... 172s Unpacking r-cran-fastmap (1.1.1-1) ... 172s Selecting previously unselected package r-cran-cachem. 172s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_arm64.deb ... 172s Unpacking r-cran-cachem (1.0.8-1) ... 172s Selecting previously unselected package r-cran-memoise. 172s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 172s Unpacking r-cran-memoise (2.0.1-1) ... 172s Selecting previously unselected package r-cran-pkgconfig. 172s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 172s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 172s Selecting previously unselected package r-cran-plogr. 172s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 172s Unpacking r-cran-plogr (0.2.0-3build1) ... 172s Selecting previously unselected package r-cran-cpp11. 172s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 172s Unpacking r-cran-cpp11 (0.4.7-1) ... 172s Selecting previously unselected package r-cran-rsqlite. 172s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_arm64.deb ... 172s Unpacking r-cran-rsqlite (2.3.4-1) ... 172s Selecting previously unselected package r-cran-curl. 172s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 172s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 172s Selecting previously unselected package r-cran-jsonlite. 172s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 172s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 172s Selecting previously unselected package r-cran-mime. 172s Preparing to unpack .../170-r-cran-mime_0.12-1_arm64.deb ... 172s Unpacking r-cran-mime (0.12-1) ... 172s Selecting previously unselected package r-cran-sys. 172s Preparing to unpack .../171-r-cran-sys_3.4.2-1_arm64.deb ... 172s Unpacking r-cran-sys (3.4.2-1) ... 172s Selecting previously unselected package r-cran-askpass. 172s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_arm64.deb ... 172s Unpacking r-cran-askpass (1.2.0-1) ... 172s Selecting previously unselected package r-cran-openssl. 172s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 172s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 172s Selecting previously unselected package r-cran-r6. 172s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 172s Unpacking r-cran-r6 (2.5.1-1) ... 172s Selecting previously unselected package r-cran-httr. 172s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 172s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 172s Selecting previously unselected package r-cran-png. 172s Preparing to unpack .../176-r-cran-png_0.1-8-1_arm64.deb ... 172s Unpacking r-cran-png (0.1-8-1) ... 172s Selecting previously unselected package r-bioc-zlibbioc. 172s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 172s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 173s Selecting previously unselected package r-bioc-xvector. 173s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_arm64.deb ... 173s Unpacking r-bioc-xvector (0.42.0-1) ... 173s Selecting previously unselected package r-cran-bitops. 173s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_arm64.deb ... 173s Unpacking r-cran-bitops (1.0-7-1) ... 173s Selecting previously unselected package r-cran-rcurl. 173s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 173s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 173s Selecting previously unselected package r-bioc-genomeinfodbdata. 173s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 173s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 173s Selecting previously unselected package r-bioc-genomeinfodb. 173s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 173s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 173s Selecting previously unselected package r-cran-crayon. 173s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 173s Unpacking r-cran-crayon (1.5.2-1) ... 173s Selecting previously unselected package r-bioc-biostrings. 173s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 173s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 173s Selecting previously unselected package r-bioc-keggrest. 173s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 173s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 173s Selecting previously unselected package r-bioc-annotationdbi. 173s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 173s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 173s Selecting previously unselected package r-bioc-genomicranges. 173s Preparing to unpack .../187-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 173s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 173s Selecting previously unselected package r-cran-lazyeval. 173s Preparing to unpack .../188-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 173s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 173s Selecting previously unselected package r-bioc-annotationfilter. 173s Preparing to unpack .../189-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 173s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 173s Selecting previously unselected package r-cran-generics. 173s Preparing to unpack .../190-r-cran-generics_0.1.3-1_all.deb ... 173s Unpacking r-cran-generics (0.1.3-1) ... 173s Selecting previously unselected package r-cran-magrittr. 173s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_arm64.deb ... 173s Unpacking r-cran-magrittr (2.0.3-1) ... 173s Selecting previously unselected package r-cran-fansi. 173s Preparing to unpack .../192-r-cran-fansi_1.0.5-1_arm64.deb ... 173s Unpacking r-cran-fansi (1.0.5-1) ... 173s Selecting previously unselected package r-cran-utf8. 173s Preparing to unpack .../193-r-cran-utf8_1.2.4-1_arm64.deb ... 173s Unpacking r-cran-utf8 (1.2.4-1) ... 173s Selecting previously unselected package r-cran-pillar. 173s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 173s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-tibble. 174s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 174s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 174s Selecting previously unselected package r-cran-withr. 174s Preparing to unpack .../196-r-cran-withr_2.5.0-1_all.deb ... 174s Unpacking r-cran-withr (2.5.0-1) ... 174s Selecting previously unselected package r-cran-tidyselect. 174s Preparing to unpack .../197-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 174s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-dplyr. 174s Preparing to unpack .../198-r-cran-dplyr_1.1.4-1_arm64.deb ... 174s Unpacking r-cran-dplyr (1.1.4-1) ... 174s Selecting previously unselected package r-cran-purrr. 174s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_arm64.deb ... 174s Unpacking r-cran-purrr (1.0.2-1) ... 174s Selecting previously unselected package r-cran-stringi. 174s Preparing to unpack .../200-r-cran-stringi_1.8.3-1_arm64.deb ... 174s Unpacking r-cran-stringi (1.8.3-1) ... 174s Selecting previously unselected package r-cran-stringr. 174s Preparing to unpack .../201-r-cran-stringr_1.5.1-1_all.deb ... 174s Unpacking r-cran-stringr (1.5.1-1) ... 174s Selecting previously unselected package r-cran-tidyr. 174s Preparing to unpack .../202-r-cran-tidyr_1.3.1-1_arm64.deb ... 174s Unpacking r-cran-tidyr (1.3.1-1) ... 174s Selecting previously unselected package r-cran-dbplyr. 174s Preparing to unpack .../203-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 174s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-filelock. 174s Preparing to unpack .../204-r-cran-filelock_1.0.3-1_arm64.deb ... 174s Unpacking r-cran-filelock (1.0.3-1) ... 174s Selecting previously unselected package r-bioc-biocfilecache. 174s Preparing to unpack .../205-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 174s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 174s Selecting previously unselected package r-bioc-biocio. 174s Preparing to unpack .../206-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 174s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-formatr. 174s Preparing to unpack .../207-r-cran-formatr_1.14-1_all.deb ... 174s Unpacking r-cran-formatr (1.14-1) ... 174s Selecting previously unselected package r-cran-lambda.r. 174s Preparing to unpack .../208-r-cran-lambda.r_1.2.4-2build1_all.deb ... 174s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 174s Selecting previously unselected package r-cran-futile.options. 174s Preparing to unpack .../209-r-cran-futile.options_1.0.1-3build1_all.deb ... 174s Unpacking r-cran-futile.options (1.0.1-3build1) ... 174s Selecting previously unselected package r-cran-futile.logger. 174s Preparing to unpack .../210-r-cran-futile.logger_1.4.3-4build1_all.deb ... 174s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 174s Selecting previously unselected package r-cran-snow. 174s Preparing to unpack .../211-r-cran-snow_1%3a0.4.4-2_all.deb ... 174s Unpacking r-cran-snow (1:0.4.4-2) ... 174s Selecting previously unselected package r-cran-codetools. 174s Preparing to unpack .../212-r-cran-codetools_0.2-19-1_all.deb ... 174s Unpacking r-cran-codetools (0.2-19-1) ... 174s Selecting previously unselected package r-cran-bh. 175s Preparing to unpack .../213-r-cran-bh_1.84.0-1_all.deb ... 175s Unpacking r-cran-bh (1.84.0-1) ... 175s Selecting previously unselected package r-bioc-biocparallel. 175s Preparing to unpack .../214-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 175s Unpacking r-bioc-biocparallel (1.36.0-1) ... 175s Selecting previously unselected package r-cran-base64enc. 175s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_arm64.deb ... 175s Unpacking r-cran-base64enc (0.1-3-3) ... 175s Selecting previously unselected package r-cran-digest. 175s Preparing to unpack .../216-r-cran-digest_0.6.34-1_arm64.deb ... 175s Unpacking r-cran-digest (0.6.34-1) ... 175s Selecting previously unselected package r-cran-ellipsis. 175s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_arm64.deb ... 175s Unpacking r-cran-ellipsis (0.3.2-2) ... 175s Selecting previously unselected package r-cran-htmltools. 175s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_arm64.deb ... 175s Unpacking r-cran-htmltools (0.5.7-1) ... 175s Selecting previously unselected package r-cran-evaluate. 175s Preparing to unpack .../219-r-cran-evaluate_0.23-1_all.deb ... 175s Unpacking r-cran-evaluate (0.23-1) ... 175s Selecting previously unselected package r-cran-xfun. 175s Preparing to unpack .../220-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 175s Unpacking r-cran-xfun (0.41+dfsg-1) ... 175s Selecting previously unselected package r-cran-highr. 175s Preparing to unpack .../221-r-cran-highr_0.10+dfsg-1_all.deb ... 175s Unpacking r-cran-highr (0.10+dfsg-1) ... 175s Selecting previously unselected package r-cran-yaml. 175s Preparing to unpack .../222-r-cran-yaml_2.3.8-1_arm64.deb ... 175s Unpacking r-cran-yaml (2.3.8-1) ... 175s Selecting previously unselected package libjs-mathjax. 175s Preparing to unpack .../223-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 175s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 176s Selecting previously unselected package r-cran-knitr. 176s Preparing to unpack .../224-r-cran-knitr_1.45+dfsg-1_all.deb ... 176s Unpacking r-cran-knitr (1.45+dfsg-1) ... 176s Selecting previously unselected package r-cran-jquerylib. 176s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 176s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 176s Selecting previously unselected package r-cran-fs. 176s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 176s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 176s Selecting previously unselected package r-cran-rappdirs. 176s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_arm64.deb ... 176s Unpacking r-cran-rappdirs (0.3.3-1) ... 176s Selecting previously unselected package r-cran-sass. 176s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 176s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 176s Selecting previously unselected package r-cran-bslib. 176s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 176s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 176s Selecting previously unselected package r-cran-fontawesome. 176s Preparing to unpack .../230-r-cran-fontawesome_0.5.2-1_all.deb ... 176s Unpacking r-cran-fontawesome (0.5.2-1) ... 176s Selecting previously unselected package r-cran-tinytex. 176s Preparing to unpack .../231-r-cran-tinytex_0.49-1_all.deb ... 176s Unpacking r-cran-tinytex (0.49-1) ... 176s Selecting previously unselected package libjs-modernizr. 176s Preparing to unpack .../232-libjs-modernizr_2.6.2+ds1-5_all.deb ... 176s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 176s Selecting previously unselected package r-cran-littler. 176s Preparing to unpack .../233-r-cran-littler_0.3.19-1_arm64.deb ... 176s Unpacking r-cran-littler (0.3.19-1) ... 176s Selecting previously unselected package r-cran-pkgkitten. 176s Preparing to unpack .../234-r-cran-pkgkitten_0.2.3-1_all.deb ... 176s Unpacking r-cran-pkgkitten (0.2.3-1) ... 176s Selecting previously unselected package r-cran-rcpp. 176s Preparing to unpack .../235-r-cran-rcpp_1.0.12-1_arm64.deb ... 176s Unpacking r-cran-rcpp (1.0.12-1) ... 176s Selecting previously unselected package r-cran-later. 176s Preparing to unpack .../236-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 176s Unpacking r-cran-later (1.3.2+dfsg-1) ... 176s Selecting previously unselected package r-cran-promises. 176s Preparing to unpack .../237-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 176s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 176s Selecting previously unselected package r-cran-httpuv. 176s Preparing to unpack .../238-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 176s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 177s Selecting previously unselected package r-cran-xtable. 177s Preparing to unpack .../239-r-cran-xtable_1%3a1.8-4-2_all.deb ... 177s Unpacking r-cran-xtable (1:1.8-4-2) ... 177s Selecting previously unselected package r-cran-sourcetools. 177s Preparing to unpack .../240-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 177s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 177s Selecting previously unselected package r-cran-commonmark. 177s Preparing to unpack .../241-r-cran-commonmark_1.9.1-1_arm64.deb ... 177s Unpacking r-cran-commonmark (1.9.1-1) ... 177s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 177s Preparing to unpack .../242-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 177s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 177s Selecting previously unselected package r-cran-shiny. 177s Preparing to unpack .../243-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 177s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 177s Selecting previously unselected package r-cran-rmarkdown. 177s Preparing to unpack .../244-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 177s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 177s Selecting previously unselected package r-cran-bookdown. 177s Preparing to unpack .../245-r-cran-bookdown_0.37+dfsg-1_all.deb ... 177s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 177s Selecting previously unselected package r-cran-biocmanager. 177s Preparing to unpack .../246-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 177s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 177s Selecting previously unselected package tex-common. 177s Preparing to unpack .../247-tex-common_6.18_all.deb ... 177s Unpacking tex-common (6.18) ... 177s Selecting previously unselected package t1utils. 177s Preparing to unpack .../248-t1utils_1.41-4build2_arm64.deb ... 177s Unpacking t1utils (1.41-4build2) ... 177s Selecting previously unselected package texlive-binaries. 177s Preparing to unpack .../249-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 177s Unpacking texlive-binaries (2023.20230311.66589-9) ... 177s Selecting previously unselected package texlive-base. 177s Preparing to unpack .../250-texlive-base_2023.20240207-1_all.deb ... 177s Unpacking texlive-base (2023.20240207-1) ... 179s Selecting previously unselected package texlive-latex-base. 179s Preparing to unpack .../251-texlive-latex-base_2023.20240207-1_all.deb ... 179s Unpacking texlive-latex-base (2023.20240207-1) ... 179s Selecting previously unselected package texlive-bibtex-extra. 179s Preparing to unpack .../252-texlive-bibtex-extra_2023.20240207-1_all.deb ... 179s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 181s Selecting previously unselected package r-bioc-biocstyle. 181s Preparing to unpack .../253-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 181s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 181s Selecting previously unselected package r-cran-xml. 182s Preparing to unpack .../254-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 182s Unpacking r-cran-xml (3.99-0.16.1-1) ... 182s Selecting previously unselected package r-cran-hms. 182s Preparing to unpack .../255-r-cran-hms_1.1.3-1_all.deb ... 182s Unpacking r-cran-hms (1.1.3-1) ... 182s Selecting previously unselected package r-cran-prettyunits. 182s Preparing to unpack .../256-r-cran-prettyunits_1.2.0-1_all.deb ... 182s Unpacking r-cran-prettyunits (1.2.0-1) ... 182s Selecting previously unselected package r-cran-progress. 182s Preparing to unpack .../257-r-cran-progress_1.2.3-1_all.deb ... 182s Unpacking r-cran-progress (1.2.3-1) ... 182s Selecting previously unselected package r-cran-xml2. 182s Preparing to unpack .../258-r-cran-xml2_1.3.6-1_arm64.deb ... 182s Unpacking r-cran-xml2 (1.3.6-1) ... 182s Selecting previously unselected package r-bioc-biomart. 182s Preparing to unpack .../259-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 182s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 182s Selecting previously unselected package r-bioc-rhtslib. 182s Preparing to unpack .../260-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 182s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 182s Selecting previously unselected package r-bioc-rsamtools. 182s Preparing to unpack .../261-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 182s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 182s Selecting previously unselected package r-cran-matrixstats. 182s Preparing to unpack .../262-r-cran-matrixstats_1.2.0-1_arm64.deb ... 182s Unpacking r-cran-matrixstats (1.2.0-1) ... 182s Selecting previously unselected package r-bioc-matrixgenerics. 182s Preparing to unpack .../263-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 182s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 182s Selecting previously unselected package r-cran-lattice. 182s Preparing to unpack .../264-r-cran-lattice_0.22-5-1_arm64.deb ... 182s Unpacking r-cran-lattice (0.22-5-1) ... 182s Selecting previously unselected package r-cran-matrix. 182s Preparing to unpack .../265-r-cran-matrix_1.6-5-1_arm64.deb ... 182s Unpacking r-cran-matrix (1.6-5-1) ... 182s Selecting previously unselected package r-cran-abind. 182s Preparing to unpack .../266-r-cran-abind_1.4-5-2_all.deb ... 182s Unpacking r-cran-abind (1.4-5-2) ... 182s Selecting previously unselected package r-bioc-s4arrays. 182s Preparing to unpack .../267-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 182s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 182s Selecting previously unselected package r-bioc-sparsearray. 182s Preparing to unpack .../268-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 182s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 182s Selecting previously unselected package r-bioc-delayedarray. 182s Preparing to unpack .../269-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 182s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 182s Selecting previously unselected package r-bioc-summarizedexperiment. 182s Preparing to unpack .../270-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 182s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 182s Selecting previously unselected package r-bioc-genomicalignments. 182s Preparing to unpack .../271-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 182s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 183s Selecting previously unselected package r-cran-rjson. 183s Preparing to unpack .../272-r-cran-rjson_0.2.21-1_arm64.deb ... 183s Unpacking r-cran-rjson (0.2.21-1) ... 183s Selecting previously unselected package r-cran-restfulr. 183s Preparing to unpack .../273-r-cran-restfulr_0.0.15-1_arm64.deb ... 183s Unpacking r-cran-restfulr (0.0.15-1) ... 183s Selecting previously unselected package r-bioc-rtracklayer. 183s Preparing to unpack .../274-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 183s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 183s Selecting previously unselected package r-bioc-bsgenome. 183s Preparing to unpack .../275-r-bioc-bsgenome_1.70.2-1_all.deb ... 183s Unpacking r-bioc-bsgenome (1.70.2-1) ... 183s Selecting previously unselected package r-bioc-genomicfeatures. 183s Preparing to unpack .../276-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 183s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 183s Selecting previously unselected package r-bioc-protgenerics. 183s Preparing to unpack .../277-r-bioc-protgenerics_1.34.0-1_all.deb ... 183s Unpacking r-bioc-protgenerics (1.34.0-1) ... 183s Selecting previously unselected package r-bioc-ensembldb. 183s Preparing to unpack .../278-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 183s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 183s Selecting previously unselected package r-bioc-org.hs.eg.db. 183s Preparing to unpack .../279-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 183s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 185s Selecting previously unselected package r-cran-markdown. 185s Preparing to unpack .../280-r-cran-markdown_1.12+dfsg-1_all.deb ... 185s Unpacking r-cran-markdown (1.12+dfsg-1) ... 185s Selecting previously unselected package r-cran-runit. 185s Preparing to unpack .../281-r-cran-runit_0.4.32-3_all.deb ... 185s Unpacking r-cran-runit (0.4.32-3) ... 185s Selecting previously unselected package autopkgtest-satdep. 185s Preparing to unpack .../282-1-autopkgtest-satdep.deb ... 185s Unpacking autopkgtest-satdep (0) ... 185s Setting up libjs-json (0~20221030+~1.0.8-1) ... 185s Setting up javascript-common (11+nmu1) ... 185s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 185s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 185s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 185s Setting up libpaper1:arm64 (1.1.29) ... 185s 185s Creating config file /etc/papersize with new version 185s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 185s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 185s Setting up libxpm4:arm64 (1:3.5.17-1) ... 185s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 185s Setting up libxi6:arm64 (2:1.8.1-1) ... 185s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 185s Setting up libdatrie1:arm64 (0.2.13-3) ... 185s Setting up libjs-popper.js (1.16.1+ds-6) ... 185s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 185s Setting up libxcb-render0:arm64 (1.15-1) ... 185s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 185s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 185s Setting up libjs-lunr (2.3.9~dfsg-2) ... 185s Setting up unzip (6.0-28ubuntu3) ... 185s Setting up liblatex-tounicode-perl (0.54-2) ... 185s Setting up x11-common (1:7.7+23ubuntu2) ... 186s Setting up node-html5shiv (3.7.3+dfsg-5) ... 186s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 186s Setting up libdeflate0:arm64 (1.19-1) ... 186s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 186s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 186s Setting up libxcb-shm0:arm64 (1.15-1) ... 186s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 186s Setting up libpaper-utils (1.1.29) ... 186s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 186s Setting up libjs-modernizr (2.6.2+ds1-5) ... 186s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 186s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 186s Setting up libjs-es5-shim (4.6.7-2) ... 186s Setting up tex-common (6.18) ... 186s update-language: texlive-base not installed and configured, doing nothing! 186s Setting up libio-string-perl (1.08-4) ... 186s Setting up zip (3.0-13) ... 186s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 186s Setting up libblas3:arm64 (3.12.0-3) ... 186s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 186s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 186s Setting up libpkgconf3:arm64 (1.8.1-2) ... 186s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 186s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 186s Setting up t1utils (1.41-4build2) ... 186s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 186s Setting up libjs-d3 (3.5.17-4) ... 186s Setting up fonts-dejavu-mono (2.37-8) ... 186s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 186s Setting up libmpc3:arm64 (1.3.1-1) ... 186s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 186s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 186s Setting up icu-devtools (74.2-1ubuntu1) ... 186s Setting up fonts-dejavu-core (2.37-8) ... 186s Setting up pkgconf-bin (1.8.1-2) ... 186s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 186s Setting up libkpathsea6:arm64 (2023.20230311.66589-9) ... 186s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 186s Setting up libwebp7:arm64 (1.3.2-0.4) ... 186s Setting up libreadline8t64:arm64 (8.2-3.1) ... 186s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 186s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 186s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 186s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 186s Setting up libnsl-dev:arm64 (1.3.0-3) ... 186s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 186s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 186s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 186s Setting up fonts-lmodern (2.005-1) ... 186s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 186s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 186s Setting up libthai-data (0.1.29-2) ... 186s Setting up node-bootstrap-sass (3.4.3-2) ... 186s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 186s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 186s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 186s Setting up pandoc-data (3.1.3-1) ... 186s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 186s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 186s Setting up libisl23:arm64 (0.26-3) ... 186s Setting up libc-dev-bin (2.39-0ubuntu2) ... 186s Setting up node-normalize.css (8.0.1-5) ... 186s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 186s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 186s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 186s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 186s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 186s Setting up libblas-dev:arm64 (3.12.0-3) ... 186s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 186s Setting up dctrl-tools (2.24-3build2) ... 186s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 186s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 186s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 186s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 186s Setting up libpotrace0:arm64 (1.16-2) ... 186s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 186s Setting up libice6:arm64 (2:1.0.10-1build2) ... 186s Setting up liblapack3:arm64 (3.12.0-3) ... 186s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 186s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 186s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 186s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 186s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 186s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 186s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 186s Setting up pkgconf:arm64 (1.8.1-2) ... 186s Setting up libthai0:arm64 (0.1.29-2) ... 186s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 186s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 186s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 186s Setting up pandoc (3.1.3+ds-2) ... 186s Setting up liblapack-dev:arm64 (3.12.0-3) ... 186s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 186s Setting up pkg-config:arm64 (1.8.1-2) ... 186s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 186s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 186s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 186s Setting up curl (8.5.0-2ubuntu7) ... 186s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 186s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 186s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 186s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 186s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 186s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 186s Setting up fontconfig (2.15.0-1ubuntu1) ... 188s Regenerating fonts cache... done. 188s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 188s Setting up libxft2:arm64 (2.3.6-1) ... 188s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 188s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 188s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 188s Setting up cpp-13 (13.2.0-17ubuntu2) ... 188s Setting up libtk8.6:arm64 (8.6.13-2) ... 188s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 188s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 189s Setting up libreadline-dev:arm64 (8.2-3.1) ... 189s Setting up libcairo2:arm64 (1.18.0-1) ... 189s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 189s Setting up gcc-13 (13.2.0-17ubuntu2) ... 189s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 189s Setting up cpp (4:13.2.0-7ubuntu1) ... 189s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 189s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 189s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 189s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 189s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 189s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 189s Setting up g++-13 (13.2.0-17ubuntu2) ... 189s Setting up libxmu6:arm64 (2:1.1.3-3) ... 189s Setting up libpng-dev:arm64 (1.6.43-3) ... 189s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 189s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 189s Setting up libxaw7:arm64 (2:1.0.14-1) ... 189s Setting up gcc (4:13.2.0-7ubuntu1) ... 189s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 189s Setting up r-base-core (4.3.3-2build1) ... 189s 189s Creating config file /etc/R/Renviron with new version 189s Setting up r-cran-crayon (1.5.2-1) ... 189s Setting up r-cran-sourcetools (0.1.7-1-1) ... 189s Setting up r-cran-futile.options (1.0.1-3build1) ... 189s Setting up r-cran-lattice (0.22-5-1) ... 189s Setting up r-cran-formatr (1.14-1) ... 189s Setting up r-cran-xml (3.99-0.16.1-1) ... 189s Setting up texlive-binaries (2023.20230311.66589-9) ... 189s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 189s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 189s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 189s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 189s Setting up r-cran-lazyeval (0.2.2-1build1) ... 189s Setting up r-cran-commonmark (1.9.1-1) ... 189s Setting up r-cran-r6 (2.5.1-1) ... 189s Setting up r-cran-pkgkitten (0.2.3-1) ... 189s Setting up texlive-base (2023.20240207-1) ... 189s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 190s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 190s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 190s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 191s Setting up r-cran-magrittr (2.0.3-1) ... 191s Setting up r-cran-rappdirs (0.3.3-1) ... 191s Setting up r-cran-filelock (1.0.3-1) ... 191s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 191s Setting up r-cran-littler (0.3.19-1) ... 191s Setting up r-cran-bh (1.84.0-1) ... 191s Setting up r-cran-fs (1.6.3+dfsg-1) ... 191s Setting up r-cran-rcpp (1.0.12-1) ... 191s Setting up r-cran-curl (5.2.0+dfsg-1) ... 191s Setting up r-cran-codetools (0.2-19-1) ... 191s Setting up r-bioc-biocgenerics (0.48.1-2) ... 191s Setting up r-cran-rlang (1.1.3-1) ... 191s Setting up r-cran-matrixstats (1.2.0-1) ... 191s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 191s Setting up r-cran-xfun (0.41+dfsg-1) ... 191s Setting up r-cran-sys (3.4.2-1) ... 191s Setting up r-cran-plogr (0.2.0-3build1) ... 191s Setting up r-cran-withr (2.5.0-1) ... 191s Setting up r-cran-mime (0.12-1) ... 191s Setting up r-cran-generics (0.1.3-1) ... 191s Setting up r-cran-base64enc (0.1-3-3) ... 191s Setting up r-cran-abind (1.4-5-2) ... 191s Setting up r-cran-digest (0.6.34-1) ... 191s Setting up r-cran-yaml (2.3.8-1) ... 191s Setting up r-cran-lambda.r (1.2.4-2build1) ... 191s Setting up r-bioc-protgenerics (1.34.0-1) ... 191s Setting up r-cran-evaluate (0.23-1) ... 191s Setting up r-cran-dbi (1.2.2-1) ... 191s Setting up r-cran-highr (0.10+dfsg-1) ... 191s Setting up r-cran-prettyunits (1.2.0-1) ... 191s Setting up r-cran-fansi (1.0.5-1) ... 191s Setting up r-cran-snow (1:0.4.4-2) ... 191s Setting up r-cran-glue (1.7.0-1) ... 191s Setting up r-cran-bit (4.0.5-1) ... 191s Setting up r-cran-xtable (1:1.8-4-2) ... 191s Setting up r-cran-cli (3.6.2-1) ... 191s Setting up gfortran (4:13.2.0-7ubuntu1) ... 191s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 191s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 191s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 191s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 191s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 191s Setting up r-cran-bitops (1.0-7-1) ... 191s Setting up r-cran-bit64 (4.0.5-1) ... 191s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 191s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 191s Setting up r-cran-askpass (1.2.0-1) ... 191s Setting up r-cran-fastmap (1.1.1-1) ... 191s Setting up r-cran-png (0.1-8-1) ... 191s Setting up r-bioc-biobase (2.62.0-1) ... 191s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 191s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 191s Setting up r-cran-utf8 (1.2.4-1) ... 191s Setting up r-cran-stringi (1.8.3-1) ... 191s Setting up texlive-latex-base (2023.20240207-1) ... 191s Setting up r-cran-markdown (1.12+dfsg-1) ... 191s Setting up r-cran-cpp11 (0.4.7-1) ... 191s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 191s Setting up r-cran-runit (0.4.32-3) ... 191s Setting up r-cran-futile.logger (1.4.3-4build1) ... 191s Setting up r-cran-later (1.3.2+dfsg-1) ... 191s Setting up r-cran-matrix (1.6-5-1) ... 191s Setting up r-cran-tinytex (0.49-1) ... 191s Setting up r-cran-knitr (1.45+dfsg-1) ... 191s Setting up g++ (4:13.2.0-7ubuntu1) ... 191s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 191s Setting up r-cran-cachem (1.0.8-1) ... 191s Setting up build-essential (12.10ubuntu1) ... 191s Setting up r-bioc-iranges (2.36.0-1) ... 191s Setting up r-cran-rjson (0.2.21-1) ... 191s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 191s Setting up r-cran-restfulr (0.0.15-1) ... 191s Setting up r-cran-vctrs (0.6.5-1) ... 191s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 191s Setting up r-cran-ellipsis (0.3.2-2) ... 191s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 191s Setting up r-base-dev (4.3.3-2build1) ... 191s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 191s Setting up r-cran-stringr (1.5.1-1) ... 191s Setting up r-bioc-biocparallel (1.36.0-1) ... 191s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 191s Setting up r-cran-xml2 (1.3.6-1) ... 191s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 191s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 191s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 191s Setting up texlive-bibtex-extra (2023.20240207-1) ... 191s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 191s Setting up r-cran-httr (1.4.7+dfsg-1) ... 191s Setting up r-cran-hms (1.1.3-1) ... 191s Setting up r-cran-memoise (2.0.1-1) ... 191s Setting up r-cran-promises (1.2.1+dfsg-1) ... 191s Setting up r-cran-purrr (1.0.2-1) ... 191s Setting up r-cran-blob (1.2.4-1) ... 191s Setting up r-cran-htmltools (0.5.7-1) ... 191s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 191s Setting up r-bioc-xvector (0.42.0-1) ... 191s Setting up r-cran-sass (0.4.8+dfsg-1) ... 191s Setting up r-cran-dplyr (1.1.4-1) ... 191s Setting up r-cran-rsqlite (2.3.4-1) ... 191s Setting up r-cran-progress (1.2.3-1) ... 191s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 191s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 191s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 191s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 191s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 191s Setting up r-cran-fontawesome (0.5.2-1) ... 191s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 191s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 191s Setting up r-cran-tidyr (1.3.1-1) ... 191s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 191s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 191s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 191s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 191s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 191s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 191s Setting up r-bioc-annotationdbi (1.64.1-1) ... 191s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 191s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 191s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 191s Setting up r-bioc-genomicalignments (1.38.2-1) ... 191s Setting up r-cran-bookdown (0.37+dfsg-1) ... 191s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 191s Setting up r-bioc-rtracklayer (1.62.0-1) ... 191s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 191s Setting up r-bioc-bsgenome (1.70.2-1) ... 191s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 191s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 191s Setting up autopkgtest-satdep (0) ... 191s Processing triggers for man-db (2.12.0-3) ... 192s Processing triggers for install-info (7.1-3) ... 192s Processing triggers for libc-bin (2.39-0ubuntu2) ... 192s Processing triggers for tex-common (6.18) ... 192s Running updmap-sys. This may take some time... done. 192s Running mktexlsr /var/lib/texmf ... done. 192s Building format(s) --all. 228s This may take some time... done. 242s (Reading database ... 124411 files and directories currently installed.) 242s Removing autopkgtest-satdep (0) ... 243s autopkgtest [17:35:30]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 243s autopkgtest [17:35:30]: test pkg-r-autopkgtest: [----------------------- 243s Test: Try to load the R library GenomicFeatures 243s 243s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 243s Copyright (C) 2024 The R Foundation for Statistical Computing 243s Platform: aarch64-unknown-linux-gnu (64-bit) 243s 243s R is free software and comes with ABSOLUTELY NO WARRANTY. 243s You are welcome to redistribute it under certain conditions. 243s Type 'license()' or 'licence()' for distribution details. 243s 243s R is a collaborative project with many contributors. 243s Type 'contributors()' for more information and 243s 'citation()' on how to cite R or R packages in publications. 243s 243s Type 'demo()' for some demos, 'help()' for on-line help, or 243s 'help.start()' for an HTML browser interface to help. 243s Type 'q()' to quit R. 243s 244s > library('GenomicFeatures') 244s Loading required package: BiocGenerics 244s 244s Attaching package: ‘BiocGenerics’ 244s 244s The following objects are masked from ‘package:stats’: 244s 244s IQR, mad, sd, var, xtabs 244s 244s The following objects are masked from ‘package:base’: 244s 244s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 244s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 244s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 244s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 244s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 244s table, tapply, union, unique, unsplit, which.max, which.min 244s 244s Loading required package: S4Vectors 244s Loading required package: stats4 244s 244s Attaching package: ‘S4Vectors’ 244s 244s The following object is masked from ‘package:utils’: 244s 244s findMatches 244s 244s The following objects are masked from ‘package:base’: 244s 244s expand.grid, I, unname 244s 244s Loading required package: IRanges 245s Loading required package: GenomeInfoDb 245s Loading required package: GenomicRanges 246s Loading required package: AnnotationDbi 246s Loading required package: Biobase 246s Welcome to Bioconductor 246s 246s Vignettes contain introductory material; view with 246s 'browseVignettes()'. To cite Bioconductor, see 246s 'citation("Biobase")', and for packages 'citation("pkgname")'. 246s 253s > 253s > 254s Other tests are currently unsupported! 254s They will be progressively added. 254s autopkgtest [17:35:41]: test pkg-r-autopkgtest: -----------------------] 254s autopkgtest [17:35:41]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 254s pkg-r-autopkgtest PASS 255s autopkgtest [17:35:42]: @@@@@@@@@@@@@@@@@@@@ summary 255s pkg-r-autopkgtest PASS 266s Creating nova instance adt-noble-arm64-r-bioc-genomicfeatures-20240316-173126-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...