0s autopkgtest [17:31:19]: starting date and time: 2024-03-16 17:31:19+0000 0s autopkgtest [17:31:19]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:31:19]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8yj2ocak/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-genomicalignments --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-3.secgroup --name adt-noble-arm64-r-bioc-genomicalignments-20240316-173119-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 88s autopkgtest [17:32:47]: testbed dpkg architecture: arm64 89s autopkgtest [17:32:48]: testbed apt version: 2.7.12 89s autopkgtest [17:32:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 89s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 89s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 90s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 90s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 90s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 90s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 90s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 90s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 90s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 90s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 90s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 90s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 90s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 91s Fetched 9060 kB in 2s (5749 kB/s) 92s Reading package lists... 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s Calculating upgrade... 96s The following packages will be REMOVED: 96s libglib2.0-0 libssl3 96s The following NEW packages will be installed: 96s libglib2.0-0t64 libssl3t64 xdg-user-dirs 96s The following packages have been kept back: 96s curl 96s The following packages will be upgraded: 96s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 96s ubuntu-minimal ubuntu-standard 97s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 97s Need to get 4613 kB of archives. 97s After this operation, 211 kB of additional disk space will be used. 97s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 97s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 97s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 97s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 97s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 97s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 97s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 97s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 97s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 97s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 98s Fetched 4613 kB in 1s (4155 kB/s) 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 98s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 98s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 98s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 98s udisks2 depends on libglib2.0-0 (>= 2.77.0). 98s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 98s python3-gi depends on libglib2.0-0 (>= 2.77.0). 98s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 98s netplan.io depends on libglib2.0-0 (>= 2.70.0). 98s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 98s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 98s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 98s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 98s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 98s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 98s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 98s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 98s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 98s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 98s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 98s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 98s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 98s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 98s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 98s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 98s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 98s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 98s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 98s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 98s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 98s fwupd depends on libglib2.0-0 (>= 2.79.0). 98s bolt depends on libglib2.0-0 (>= 2.56.0). 98s 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 98s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 98s Selecting previously unselected package libglib2.0-0t64:arm64. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 98s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 98s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 98s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 98s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 98s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 98s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 99s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 99s wget depends on libssl3 (>= 3.0.0). 99s u-boot-tools depends on libssl3 (>= 3.0.0). 99s tnftp depends on libssl3 (>= 3.0.0). 99s tcpdump depends on libssl3 (>= 3.0.0). 99s systemd-resolved depends on libssl3 (>= 3.0.0). 99s systemd depends on libssl3 (>= 3.0.0). 99s sudo depends on libssl3 (>= 3.0.0). 99s sbsigntool depends on libssl3 (>= 3.0.0). 99s rsync depends on libssl3 (>= 3.0.0). 99s python3-cryptography depends on libssl3 (>= 3.0.0). 99s openssh-server depends on libssl3 (>= 3.0.10). 99s openssh-client depends on libssl3 (>= 3.0.10). 99s mtd-utils depends on libssl3 (>= 3.0.0). 99s mokutil depends on libssl3 (>= 3.0.0). 99s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 99s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 99s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 99s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 99s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 99s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 99s libnvme1 depends on libssl3 (>= 3.0.0). 99s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 99s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 99s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 99s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 99s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 99s kmod depends on libssl3 (>= 3.0.0). 99s dhcpcd-base depends on libssl3 (>= 3.0.0). 99s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 99s 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 99s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 99s Selecting previously unselected package libssl3t64:arm64. 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 99s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 99s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 99s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 99s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 99s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 99s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 99s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 99s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 99s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 99s Unpacking ubuntu-minimal (1.536) over (1.535) ... 99s Selecting previously unselected package xdg-user-dirs. 99s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 99s Unpacking xdg-user-dirs (0.18-1) ... 99s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 99s Unpacking ubuntu-standard (1.536) over (1.535) ... 99s Setting up ubuntu-minimal (1.536) ... 99s Setting up xdg-user-dirs (0.18-1) ... 99s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 99s Setting up libtirpc-common (1.3.4+ds-1.1) ... 99s Setting up ubuntu-standard (1.536) ... 99s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 99s No schema files found: doing nothing. 99s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 99s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 99s Setting up openssl (3.0.13-0ubuntu1) ... 99s Setting up readline-common (8.2-3.1) ... 99s Processing triggers for man-db (2.12.0-3) ... 100s Processing triggers for install-info (7.1-3) ... 100s Processing triggers for libc-bin (2.39-0ubuntu2) ... 100s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 102s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 102s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 102s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 102s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 104s Reading package lists... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Calculating upgrade... 105s The following packages have been kept back: 105s curl 105s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 105s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 109s autopkgtest [17:33:08]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 110s autopkgtest [17:33:09]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicalignments 115s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicalignments 1.38.2-1 (dsc) [2416 B] 115s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicalignments 1.38.2-1 (tar) [2266 kB] 115s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicalignments 1.38.2-1 (diff) [7556 B] 115s gpgv: Signature made Thu Jan 25 16:02:39 2024 UTC 115s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 115s gpgv: issuer "tille@debian.org" 115s gpgv: Can't check signature: No public key 115s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicalignments_1.38.2-1.dsc: no acceptable signature found 115s autopkgtest [17:33:14]: testing package r-bioc-genomicalignments version 1.38.2-1 115s autopkgtest [17:33:14]: build not needed 117s autopkgtest [17:33:16]: test pkg-r-autopkgtest: preparing testbed 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Starting pkgProblemResolver with broken count: 0 119s Starting 2 pkgProblemResolver with broken count: 0 119s Done 120s The following additional packages will be installed: 120s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 120s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 120s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 120s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 120s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 120s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 120s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 120s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 120s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 120s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 120s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 120s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 120s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 120s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 120s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 120s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 120s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 120s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 120s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 120s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 120s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 120s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 120s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 120s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 120s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 120s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 120s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 120s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 120s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 120s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 120s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 120s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 120s r-bioc-delayedarray r-bioc-deseq2 r-bioc-edger r-bioc-genomeinfodb 120s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 120s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma 120s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 120s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 120s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 120s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 120s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 120s r-cran-cachem r-cran-cli r-cran-codetools r-cran-colorspace 120s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 120s r-cran-dbplyr r-cran-deldir r-cran-digest r-cran-dplyr r-cran-ellipsis 120s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 120s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 120s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 120s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 120s r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg 120s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 120s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 120s r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass 120s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 120s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig 120s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 120s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 120s r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl 120s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 120s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 120s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 120s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 120s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 120s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 120s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 120s x11-common xdg-utils zip zlib1g-dev 120s Suggested packages: 120s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 120s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 120s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 120s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 120s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 120s libboost-context1.83-dev libboost-contract1.83-dev 120s libboost-coroutine1.83-dev libboost-date-time1.83-dev 120s libboost-exception1.83-dev libboost-fiber1.83-dev 120s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 120s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 120s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 120s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 120s libboost-numpy1.83-dev libboost-program-options1.83-dev 120s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 120s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 120s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 120s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 120s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 120s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 120s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 120s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 120s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 120s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 120s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 120s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 120s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 120s r-bioc-affy r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 120s r-bioc-variantannotation r-cran-batchtools r-cran-data.table r-cran-mockery 120s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 120s r-bioc-delayedmatrixstats r-cran-pheatmap r-bioc-tximport r-bioc-tximeta 120s r-bioc-tximportdata r-cran-readr r-cran-pbapply r-bioc-glmgampoi 120s r-bioc-rhdf5 r-cran-seuratobject r-cran-r.utils r-bioc-ensembldb 120s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-annotationhub 120s r-bioc-dexseq r-cran-biasedurn r-cran-ellipse r-cran-gplots 120s r-bioc-sparsematrixstats r-cran-roxygen2 r-cran-ff r-cran-covr 120s r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs 120s r-cran-viridis r-cran-rstudioapi r-cran-rmysql r-cran-polyclip 120s r-cran-lubridate r-cran-sp r-cran-gridextra r-cran-scatterplot3d 120s r-cran-magick r-cran-sf r-cran-getopt r-cran-gam r-cran-formattable 120s r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units 120s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-spelling 120s r-cran-bench r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild 120s r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript gv 120s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 120s hintview texlive-latex-base-doc wp2latex 120s Recommended packages: 120s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 120s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 120s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 120s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-thematic 120s r-cran-callr r-cran-covr r-cran-mockery r-cran-processx r-cran-ps 120s r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio r-cran-decor 120s r-cran-desc r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-rpostgresql 120s r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-survival 120s r-cran-pkgload r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps 120s r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart 120s r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-waldo r-cran-cairo 120s r-cran-markdown r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick 120s r-cran-reticulate r-cran-rgl r-cran-tikzdevice node-highlight.js 120s r-cran-lintr r-cran-tidyverse r-cran-r.devices r-cran-sodium 120s r-cran-lubridate r-cran-future r-cran-usethis r-cran-dygraphs r-cran-dbitest 120s r-cran-gert r-cran-gh r-cran-rvest r-cran-dichromat r-cran-data.table 120s r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 120s lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 120s x11-utils x11-xserver-utils 120s The following packages will be REMOVED: 120s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 120s The following NEW packages will be installed: 120s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 120s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 120s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 120s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 120s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 120s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 120s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 120s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 120s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 120s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 120s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 120s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 120s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 120s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 120s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 120s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 120s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 120s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 120s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 120s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 120s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 120s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 120s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 120s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 120s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 120s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 120s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 120s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 120s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 120s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 120s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 120s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 120s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 120s r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 120s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 120s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 120s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 120s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 120s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 120s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 120s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 120s r-cran-cachem r-cran-cli r-cran-codetools r-cran-colorspace 120s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 120s r-cran-dbplyr r-cran-deldir r-cran-digest r-cran-dplyr r-cran-ellipsis 120s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 120s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 120s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 120s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 120s r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg 120s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 120s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 120s r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass 120s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 120s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig 120s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 120s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 120s r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl 120s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 120s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 120s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 120s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 120s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 120s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 120s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 120s x11-common xdg-utils zip zlib1g-dev 120s The following packages will be upgraded: 120s curl 121s 1 upgraded, 308 newly installed, 5 to remove and 0 not upgraded. 121s Need to get 456 MB/456 MB of archives. 121s After this operation, 1399 MB of additional disk space will be used. 121s Get:1 /tmp/autopkgtest.Fp74N0/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [796 B] 121s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 121s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 121s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 121s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 121s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 121s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 121s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 121s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 121s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 121s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 121s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 121s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 121s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 121s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 121s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 121s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 122s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 122s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 122s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 122s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 122s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 122s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 122s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 122s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 122s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 122s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 122s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 122s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 122s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 122s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 122s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 122s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 122s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 122s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 122s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 123s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 123s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 123s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 123s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 123s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 123s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 123s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 123s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 123s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 123s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 123s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 123s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 123s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 123s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 123s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 123s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 123s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 123s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 123s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 123s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 123s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 123s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 123s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 123s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 123s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 123s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 123s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 123s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 124s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 124s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 124s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 124s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 124s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 124s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 124s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 124s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 124s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 124s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 124s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 124s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 124s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 124s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 124s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 124s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 124s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 124s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 124s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 124s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 124s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 124s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 124s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 124s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 124s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 124s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 124s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 124s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 124s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 124s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 124s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 124s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 124s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 124s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 124s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 124s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 124s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 124s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 124s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 125s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 125s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 125s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 125s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 125s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 125s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 125s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 125s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 125s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 125s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 125s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 125s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 125s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 125s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 125s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 125s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 125s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 125s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 125s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 125s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 125s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 125s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 125s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 125s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 125s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 125s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 125s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 125s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 125s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 125s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 125s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 125s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 125s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 125s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 125s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 125s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 125s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 125s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 125s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 125s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 126s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 126s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 126s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 126s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 126s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 126s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 126s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 126s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 126s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 126s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 126s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 126s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 127s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 127s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 127s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 127s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 127s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 127s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 127s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 127s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 127s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 127s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 127s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 127s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 127s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 127s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 127s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 127s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 127s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 127s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 127s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 127s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 127s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 127s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 127s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 127s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 127s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 127s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 127s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 127s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 127s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 127s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 127s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 127s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 127s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 127s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 127s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 127s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 127s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 127s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 128s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 128s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 128s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 128s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 128s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 128s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 128s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 128s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 128s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 128s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 128s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 129s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 129s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 129s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 129s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 129s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 129s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 129s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 129s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 129s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 129s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 129s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 129s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 129s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 129s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 129s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 129s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 129s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 129s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 129s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 129s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 129s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 129s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 129s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 129s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 129s Get:229 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 129s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 129s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 129s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 129s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 129s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 129s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 129s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 129s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 129s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 129s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 129s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 129s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 129s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 129s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 129s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 129s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 129s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 129s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 129s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 129s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 130s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 130s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 130s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 130s Get:253 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 130s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 130s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 130s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 130s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 132s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 132s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 132s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 132s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 132s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 132s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 132s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 132s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 132s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 132s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 132s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 132s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 132s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 132s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 132s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 132s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 132s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 132s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 133s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 133s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 133s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 133s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 133s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 133s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 133s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 133s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 133s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 133s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 133s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 133s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 133s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 133s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 133s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 133s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 133s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 133s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 133s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 133s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 133s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 133s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq2 arm64 1.42.0+dfsg-1 [1218 kB] 133s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 133s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 133s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 133s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 133s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 133s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 133s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 134s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 134s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 134s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 134s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB] 134s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 136s Preconfiguring packages ... 137s Fetched 456 MB in 14s (33.1 MB/s) 137s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 137s wget depends on libpsl5 (>= 0.16.0). 137s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 137s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 137s 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 137s Removing libpsl5:arm64 (0.21.2-1build1) ... 137s Selecting previously unselected package libpsl5t64:arm64. 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 137s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 137s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 137s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 137s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 137s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 137s Selecting previously unselected package libcurl4t64:arm64. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 138s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 138s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 138s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 138s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 138s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 138s 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 138s Removing libpng16-16:arm64 (1.6.43-1) ... 138s Selecting previously unselected package libpng16-16t64:arm64. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 138s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 138s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 138s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 138s parted depends on libreadline8 (>= 6.0). 138s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 138s gpgsm depends on libreadline8 (>= 6.0). 138s gpgconf depends on libreadline8 (>= 6.0). 138s gpg depends on libreadline8 (>= 6.0). 138s gawk depends on libreadline8 (>= 6.0). 138s fdisk depends on libreadline8 (>= 6.0). 138s 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 138s Removing libreadline8:arm64 (8.2-3) ... 138s Selecting previously unselected package libreadline8t64:arm64. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 138s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 138s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 138s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 138s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 138s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 138s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 138s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 138s lsof depends on libtirpc3 (>= 1.0.2). 138s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 138s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 138s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 138s iproute2 depends on libtirpc3 (>= 1.0.2). 138s 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 138s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 138s Selecting previously unselected package libtirpc3t64:arm64. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 138s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 138s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 138s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 138s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 138s Selecting previously unselected package libc-dev-bin. 138s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 138s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 138s Selecting previously unselected package linux-libc-dev:arm64. 138s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 138s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 138s Selecting previously unselected package libcrypt-dev:arm64. 138s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 138s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 138s Selecting previously unselected package libtirpc-dev:arm64. 138s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 138s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 138s Selecting previously unselected package libnsl-dev:arm64. 139s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 139s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 139s Selecting previously unselected package rpcsvc-proto. 139s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 139s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 139s Selecting previously unselected package libc6-dev:arm64. 139s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 139s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 139s Selecting previously unselected package libisl23:arm64. 139s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 139s Unpacking libisl23:arm64 (0.26-3) ... 139s Selecting previously unselected package libmpc3:arm64. 139s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 139s Unpacking libmpc3:arm64 (1.3.1-1) ... 139s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 139s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 139s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package cpp-13. 140s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package cpp-aarch64-linux-gnu. 140s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 140s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 140s Selecting previously unselected package cpp. 140s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 140s Unpacking cpp (4:13.2.0-7ubuntu1) ... 140s Selecting previously unselected package libcc1-0:arm64. 140s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libgomp1:arm64. 140s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libitm1:arm64. 140s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libatomic1:arm64. 140s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libasan8:arm64. 140s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package liblsan0:arm64. 140s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libtsan2:arm64. 140s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libubsan1:arm64. 140s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libhwasan0:arm64. 140s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libgcc-13-dev:arm64. 140s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 141s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package gcc-13. 141s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package gcc-aarch64-linux-gnu. 141s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package gcc. 141s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking gcc (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package libstdc++-13-dev:arm64. 141s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package g++-13-aarch64-linux-gnu. 141s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 142s Selecting previously unselected package g++-13. 142s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 142s Unpacking g++-13 (13.2.0-17ubuntu2) ... 142s Selecting previously unselected package g++-aarch64-linux-gnu. 142s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 142s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 142s Selecting previously unselected package g++. 143s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 143s Unpacking g++ (4:13.2.0-7ubuntu1) ... 143s Selecting previously unselected package build-essential. 143s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 143s Unpacking build-essential (12.10ubuntu1) ... 143s Selecting previously unselected package dctrl-tools. 143s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 143s Unpacking dctrl-tools (2.24-3build2) ... 143s Selecting previously unselected package fonts-dejavu-mono. 144s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 144s Unpacking fonts-dejavu-mono (2.37-8) ... 144s Selecting previously unselected package fonts-dejavu-core. 144s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 144s Unpacking fonts-dejavu-core (2.37-8) ... 144s Selecting previously unselected package fontconfig-config. 144s Preparing to unpack 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fonts-lmodern. 145s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 145s Unpacking fonts-lmodern (2.005-1) ... 145s Selecting previously unselected package fonts-mathjax. 145s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 145s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 145s Selecting previously unselected package libgfortran5:arm64. 145s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 145s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 146s Selecting previously unselected package libgfortran-13-dev:arm64. 146s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 146s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 146s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 146s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 146s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 146s Selecting previously unselected package gfortran-13. 146s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 146s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 146s Selecting previously unselected package gfortran-aarch64-linux-gnu. 146s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 146s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 146s Selecting previously unselected package gfortran. 146s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 146s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 146s Selecting previously unselected package icu-devtools. 146s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 146s Unpacking icu-devtools (74.2-1ubuntu1) ... 146s Selecting previously unselected package javascript-common. 146s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 146s Unpacking javascript-common (11+nmu1) ... 146s Selecting previously unselected package libio-string-perl. 146s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 146s Unpacking libio-string-perl (1.08-4) ... 146s Selecting previously unselected package liblatex-tounicode-perl. 146s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 146s Unpacking liblatex-tounicode-perl (0.54-2) ... 146s Selecting previously unselected package libbibtex-parser-perl. 146s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 146s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 146s Selecting previously unselected package libblas3:arm64. 146s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 146s Unpacking libblas3:arm64 (3.12.0-3) ... 146s Selecting previously unselected package libblas-dev:arm64. 146s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 146s Unpacking libblas-dev:arm64 (3.12.0-3) ... 146s Selecting previously unselected package libboost1.83-dev:arm64. 146s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 146s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 150s Selecting previously unselected package libboost-dev:arm64. 154s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 154s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 154s Selecting previously unselected package libbz2-dev:arm64. 156s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 156s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 156s Selecting previously unselected package libpixman-1-0:arm64. 156s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 156s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 156s Selecting previously unselected package libxcb-render0:arm64. 156s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 156s Unpacking libxcb-render0:arm64 (1.15-1) ... 156s Selecting previously unselected package libxcb-shm0:arm64. 156s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 156s Unpacking libxcb-shm0:arm64 (1.15-1) ... 156s Selecting previously unselected package libxrender1:arm64. 156s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 156s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 156s Selecting previously unselected package libcairo2:arm64. 156s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 156s Unpacking libcairo2:arm64 (1.18.0-1) ... 156s Selecting previously unselected package libdatrie1:arm64. 156s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 156s Unpacking libdatrie1:arm64 (0.2.13-3) ... 156s Selecting previously unselected package libdeflate0:arm64. 156s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 156s Unpacking libdeflate0:arm64 (1.19-1) ... 156s Selecting previously unselected package libgraphite2-3:arm64. 156s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 156s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 156s Selecting previously unselected package libharfbuzz0b:arm64. 156s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 156s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 156s Selecting previously unselected package x11-common. 156s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 156s Unpacking x11-common (1:7.7+23ubuntu2) ... 156s Selecting previously unselected package libice6:arm64. 156s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 156s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 156s Selecting previously unselected package libicu-dev:arm64. 156s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 156s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 157s Selecting previously unselected package libjpeg-turbo8:arm64. 157s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 157s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 157s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 157s Preparing to unpack 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package libjs-jquery-datatables. 158s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 158s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 158s Selecting previously unselected package libjs-sifter.js. 158s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 158s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 158s Selecting previously unselected package libjs-microplugin.js. 158s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 158s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 158s Selecting previously unselected package libjs-jquery-selectize.js. 158s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 158s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 158s Selecting previously unselected package libjs-jquery-ui. 158s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 158s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 158s Selecting previously unselected package libjs-json. 158s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 158s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 158s Selecting previously unselected package libjs-lunr. 158s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 158s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 158s Selecting previously unselected package libjs-prettify. 158s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 158s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 158s Selecting previously unselected package libkpathsea6:arm64. 158s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 158s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 158s Selecting previously unselected package liblapack3:arm64. 158s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 158s Unpacking liblapack3:arm64 (3.12.0-3) ... 158s Selecting previously unselected package liblapack-dev:arm64. 159s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 159s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 159s Selecting previously unselected package liblerc4:arm64. 159s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 159s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 159s Selecting previously unselected package liblua5.4-0:arm64. 159s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 159s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 159s Selecting previously unselected package libncurses-dev:arm64. 159s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 159s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 159s Selecting previously unselected package libthai-data. 159s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 159s Unpacking libthai-data (0.1.29-2) ... 159s Selecting previously unselected package libthai0:arm64. 159s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 159s Unpacking libthai0:arm64 (0.1.29-2) ... 159s Selecting previously unselected package libpango-1.0-0:arm64. 159s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 159s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 159s Selecting previously unselected package libpangoft2-1.0-0:arm64. 159s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 159s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 159s Selecting previously unselected package libpangocairo-1.0-0:arm64. 159s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 159s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 159s Selecting previously unselected package libpaper1:arm64. 159s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 159s Unpacking libpaper1:arm64 (1.1.29) ... 160s Selecting previously unselected package libpaper-utils. 160s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 160s Unpacking libpaper-utils (1.1.29) ... 160s Selecting previously unselected package libpcre2-16-0:arm64. 160s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 160s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 160s Selecting previously unselected package libpcre2-32-0:arm64. 160s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 160s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 160s Selecting previously unselected package libpcre2-posix3:arm64. 160s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 160s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 160s Selecting previously unselected package libpcre2-dev:arm64. 160s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 160s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 160s Selecting previously unselected package libpkgconf3:arm64. 160s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 160s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 160s Selecting previously unselected package zlib1g-dev:arm64. 160s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 160s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 160s Selecting previously unselected package libpng-dev:arm64. 160s Preparing to unpack .../111-libpng-dev_1.6.43-3_arm64.deb ... 160s Unpacking libpng-dev:arm64 (1.6.43-3) ... 160s Selecting previously unselected package libpotrace0:arm64. 160s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 160s Unpacking libpotrace0:arm64 (1.16-2) ... 160s Selecting previously unselected package libptexenc1:arm64. 160s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 160s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 160s Selecting previously unselected package libreadline-dev:arm64. 160s Preparing to unpack .../114-libreadline-dev_8.2-3.1_arm64.deb ... 160s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 160s Selecting previously unselected package libsharpyuv0:arm64. 160s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 160s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 160s Selecting previously unselected package libsm6:arm64. 160s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 160s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 161s Selecting previously unselected package libsynctex2:arm64. 161s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 161s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 161s Selecting previously unselected package libtcl8.6:arm64. 161s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 161s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 161s Selecting previously unselected package libteckit0:arm64. 161s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 161s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 161s Selecting previously unselected package libtexlua53-5:arm64. 161s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 161s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 161s Selecting previously unselected package libjbig0:arm64. 161s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 161s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 161s Selecting previously unselected package libwebp7:arm64. 161s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 161s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 161s Selecting previously unselected package libtiff6:arm64. 161s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 161s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 161s Selecting previously unselected package libxft2:arm64. 162s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 162s Unpacking libxft2:arm64 (2.3.6-1) ... 162s Selecting previously unselected package libxss1:arm64. 162s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 162s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 162s Selecting previously unselected package libtk8.6:arm64. 162s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 162s Unpacking libtk8.6:arm64 (8.6.13-2) ... 162s Selecting previously unselected package libxt6t64:arm64. 162s Preparing to unpack .../127-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 162s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 163s Selecting previously unselected package libxmu6:arm64. 163s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 163s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 163s Selecting previously unselected package libxpm4:arm64. 163s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 163s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 163s Selecting previously unselected package libxaw7:arm64. 163s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 163s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 163s Selecting previously unselected package libxi6:arm64. 164s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 164s Unpacking libxi6:arm64 (2:1.8.1-1) ... 164s Selecting previously unselected package libzzip-0-13:arm64. 164s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 164s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 164s Selecting previously unselected package zip. 164s Preparing to unpack .../133-zip_3.0-13_arm64.deb ... 164s Unpacking zip (3.0-13) ... 164s Selecting previously unselected package unzip. 164s Preparing to unpack .../134-unzip_6.0-28ubuntu3_arm64.deb ... 164s Unpacking unzip (6.0-28ubuntu3) ... 164s Selecting previously unselected package xdg-utils. 164s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 164s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 164s Selecting previously unselected package r-base-core. 164s Preparing to unpack .../136-r-base-core_4.3.3-2build1_arm64.deb ... 164s Unpacking r-base-core (4.3.3-2build1) ... 164s Selecting previously unselected package r-cran-littler. 164s Preparing to unpack .../137-r-cran-littler_0.3.19-1_arm64.deb ... 164s Unpacking r-cran-littler (0.3.19-1) ... 164s Selecting previously unselected package littler. 164s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 164s Unpacking littler (0.3.19-1) ... 165s Selecting previously unselected package node-bootstrap-sass. 165s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 165s Unpacking node-bootstrap-sass (3.4.3-2) ... 165s Selecting previously unselected package node-html5shiv. 165s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 165s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 165s Selecting previously unselected package node-normalize.css. 165s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 165s Unpacking node-normalize.css (8.0.1-5) ... 165s Selecting previously unselected package pandoc-data. 165s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 165s Unpacking pandoc-data (3.1.3-1) ... 165s Selecting previously unselected package pandoc. 165s Preparing to unpack .../143-pandoc_3.1.3+ds-2_arm64.deb ... 165s Unpacking pandoc (3.1.3+ds-2) ... 166s Selecting previously unselected package pkgconf-bin. 166s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_arm64.deb ... 166s Unpacking pkgconf-bin (1.8.1-2) ... 166s Selecting previously unselected package pkgconf:arm64. 166s Preparing to unpack .../145-pkgconf_1.8.1-2_arm64.deb ... 166s Unpacking pkgconf:arm64 (1.8.1-2) ... 166s Selecting previously unselected package pkg-config:arm64. 166s Preparing to unpack .../146-pkg-config_1.8.1-2_arm64.deb ... 166s Unpacking pkg-config:arm64 (1.8.1-2) ... 166s Selecting previously unselected package liblzma-dev:arm64. 166s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 166s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 166s Selecting previously unselected package r-base-dev. 166s Preparing to unpack .../148-r-base-dev_4.3.3-2build1_all.deb ... 166s Unpacking r-base-dev (4.3.3-2build1) ... 166s Selecting previously unselected package pkg-r-autopkgtest. 166s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 166s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 166s Selecting previously unselected package r-bioc-biocgenerics. 166s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 166s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 166s Selecting previously unselected package r-bioc-biobase. 166s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_arm64.deb ... 166s Unpacking r-bioc-biobase (2.62.0-1) ... 167s Selecting previously unselected package r-bioc-s4vectors. 167s Preparing to unpack .../152-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 167s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 167s Selecting previously unselected package r-bioc-iranges. 167s Preparing to unpack .../153-r-bioc-iranges_2.36.0-1_arm64.deb ... 167s Unpacking r-bioc-iranges (2.36.0-1) ... 167s Selecting previously unselected package r-cran-dbi. 167s Preparing to unpack .../154-r-cran-dbi_1.2.2-1_all.deb ... 167s Unpacking r-cran-dbi (1.2.2-1) ... 167s Selecting previously unselected package r-cran-bit. 167s Preparing to unpack .../155-r-cran-bit_4.0.5-1_arm64.deb ... 167s Unpacking r-cran-bit (4.0.5-1) ... 167s Selecting previously unselected package r-cran-bit64. 167s Preparing to unpack .../156-r-cran-bit64_4.0.5-1_arm64.deb ... 167s Unpacking r-cran-bit64 (4.0.5-1) ... 167s Selecting previously unselected package r-cran-rlang. 167s Preparing to unpack .../157-r-cran-rlang_1.1.3-1_arm64.deb ... 167s Unpacking r-cran-rlang (1.1.3-1) ... 167s Selecting previously unselected package r-cran-cli. 167s Preparing to unpack .../158-r-cran-cli_3.6.2-1_arm64.deb ... 167s Unpacking r-cran-cli (3.6.2-1) ... 167s Selecting previously unselected package r-cran-glue. 167s Preparing to unpack .../159-r-cran-glue_1.7.0-1_arm64.deb ... 167s Unpacking r-cran-glue (1.7.0-1) ... 167s Selecting previously unselected package r-cran-lifecycle. 167s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 167s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 167s Selecting previously unselected package r-cran-vctrs. 167s Preparing to unpack .../161-r-cran-vctrs_0.6.5-1_arm64.deb ... 167s Unpacking r-cran-vctrs (0.6.5-1) ... 167s Selecting previously unselected package r-cran-blob. 167s Preparing to unpack .../162-r-cran-blob_1.2.4-1_all.deb ... 167s Unpacking r-cran-blob (1.2.4-1) ... 167s Selecting previously unselected package r-cran-fastmap. 168s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_arm64.deb ... 168s Unpacking r-cran-fastmap (1.1.1-1) ... 168s Selecting previously unselected package r-cran-cachem. 168s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 168s Unpacking r-cran-cachem (1.0.8-1) ... 168s Selecting previously unselected package r-cran-memoise. 168s Preparing to unpack .../165-r-cran-memoise_2.0.1-1_all.deb ... 168s Unpacking r-cran-memoise (2.0.1-1) ... 168s Selecting previously unselected package r-cran-pkgconfig. 168s Preparing to unpack .../166-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 168s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 168s Selecting previously unselected package r-cran-plogr. 168s Preparing to unpack .../167-r-cran-plogr_0.2.0-3build1_all.deb ... 168s Unpacking r-cran-plogr (0.2.0-3build1) ... 168s Selecting previously unselected package r-cran-cpp11. 168s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 168s Unpacking r-cran-cpp11 (0.4.7-1) ... 168s Selecting previously unselected package r-cran-rsqlite. 168s Preparing to unpack .../169-r-cran-rsqlite_2.3.4-1_arm64.deb ... 168s Unpacking r-cran-rsqlite (2.3.4-1) ... 168s Selecting previously unselected package r-cran-curl. 168s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 168s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 168s Selecting previously unselected package r-cran-jsonlite. 168s Preparing to unpack .../171-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 168s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 168s Selecting previously unselected package r-cran-mime. 168s Preparing to unpack .../172-r-cran-mime_0.12-1_arm64.deb ... 168s Unpacking r-cran-mime (0.12-1) ... 168s Selecting previously unselected package r-cran-sys. 168s Preparing to unpack .../173-r-cran-sys_3.4.2-1_arm64.deb ... 168s Unpacking r-cran-sys (3.4.2-1) ... 168s Selecting previously unselected package r-cran-askpass. 168s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_arm64.deb ... 168s Unpacking r-cran-askpass (1.2.0-1) ... 168s Selecting previously unselected package r-cran-openssl. 168s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 168s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 168s Selecting previously unselected package r-cran-r6. 168s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 168s Unpacking r-cran-r6 (2.5.1-1) ... 168s Selecting previously unselected package r-cran-httr. 169s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 169s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 169s Selecting previously unselected package r-cran-png. 169s Preparing to unpack .../178-r-cran-png_0.1-8-1_arm64.deb ... 169s Unpacking r-cran-png (0.1-8-1) ... 169s Selecting previously unselected package r-bioc-zlibbioc. 169s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 169s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 169s Selecting previously unselected package r-bioc-xvector. 169s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_arm64.deb ... 169s Unpacking r-bioc-xvector (0.42.0-1) ... 169s Selecting previously unselected package r-cran-bitops. 169s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_arm64.deb ... 169s Unpacking r-cran-bitops (1.0-7-1) ... 169s Selecting previously unselected package r-cran-rcurl. 169s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 169s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 169s Selecting previously unselected package r-bioc-genomeinfodbdata. 170s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 170s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 170s Selecting previously unselected package r-bioc-genomeinfodb. 170s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 170s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 170s Selecting previously unselected package r-cran-crayon. 170s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 170s Unpacking r-cran-crayon (1.5.2-1) ... 170s Selecting previously unselected package r-bioc-biostrings. 170s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 170s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 170s Selecting previously unselected package r-bioc-keggrest. 170s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 170s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 170s Selecting previously unselected package r-bioc-annotationdbi. 170s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 170s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 170s Selecting previously unselected package r-cran-generics. 171s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 171s Unpacking r-cran-generics (0.1.3-1) ... 171s Selecting previously unselected package r-cran-magrittr. 171s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_arm64.deb ... 171s Unpacking r-cran-magrittr (2.0.3-1) ... 171s Selecting previously unselected package r-cran-fansi. 172s Preparing to unpack .../191-r-cran-fansi_1.0.5-1_arm64.deb ... 172s Unpacking r-cran-fansi (1.0.5-1) ... 172s Selecting previously unselected package r-cran-utf8. 172s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_arm64.deb ... 172s Unpacking r-cran-utf8 (1.2.4-1) ... 172s Selecting previously unselected package r-cran-pillar. 172s Preparing to unpack .../193-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 172s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 172s Selecting previously unselected package r-cran-tibble. 172s Preparing to unpack .../194-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 172s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 172s Selecting previously unselected package r-cran-withr. 172s Preparing to unpack .../195-r-cran-withr_2.5.0-1_all.deb ... 172s Unpacking r-cran-withr (2.5.0-1) ... 172s Selecting previously unselected package r-cran-tidyselect. 172s Preparing to unpack .../196-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 172s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 172s Selecting previously unselected package r-cran-dplyr. 173s Preparing to unpack .../197-r-cran-dplyr_1.1.4-1_arm64.deb ... 173s Unpacking r-cran-dplyr (1.1.4-1) ... 173s Selecting previously unselected package r-cran-purrr. 173s Preparing to unpack .../198-r-cran-purrr_1.0.2-1_arm64.deb ... 173s Unpacking r-cran-purrr (1.0.2-1) ... 173s Selecting previously unselected package r-cran-stringi. 173s Preparing to unpack .../199-r-cran-stringi_1.8.3-1_arm64.deb ... 173s Unpacking r-cran-stringi (1.8.3-1) ... 173s Selecting previously unselected package r-cran-stringr. 173s Preparing to unpack .../200-r-cran-stringr_1.5.1-1_all.deb ... 173s Unpacking r-cran-stringr (1.5.1-1) ... 173s Selecting previously unselected package r-cran-tidyr. 173s Preparing to unpack .../201-r-cran-tidyr_1.3.1-1_arm64.deb ... 173s Unpacking r-cran-tidyr (1.3.1-1) ... 173s Selecting previously unselected package r-cran-dbplyr. 173s Preparing to unpack .../202-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 173s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 173s Selecting previously unselected package r-cran-filelock. 173s Preparing to unpack .../203-r-cran-filelock_1.0.3-1_arm64.deb ... 173s Unpacking r-cran-filelock (1.0.3-1) ... 173s Selecting previously unselected package r-bioc-biocfilecache. 173s Preparing to unpack .../204-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 173s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 173s Selecting previously unselected package r-bioc-biocio. 173s Preparing to unpack .../205-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 173s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 173s Selecting previously unselected package r-cran-formatr. 173s Preparing to unpack .../206-r-cran-formatr_1.14-1_all.deb ... 173s Unpacking r-cran-formatr (1.14-1) ... 173s Selecting previously unselected package r-cran-lambda.r. 173s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build1_all.deb ... 173s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 173s Selecting previously unselected package r-cran-futile.options. 173s Preparing to unpack .../208-r-cran-futile.options_1.0.1-3build1_all.deb ... 173s Unpacking r-cran-futile.options (1.0.1-3build1) ... 173s Selecting previously unselected package r-cran-futile.logger. 173s Preparing to unpack .../209-r-cran-futile.logger_1.4.3-4build1_all.deb ... 173s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 173s Selecting previously unselected package r-cran-snow. 174s Preparing to unpack .../210-r-cran-snow_1%3a0.4.4-2_all.deb ... 174s Unpacking r-cran-snow (1:0.4.4-2) ... 174s Selecting previously unselected package r-cran-codetools. 174s Preparing to unpack .../211-r-cran-codetools_0.2-19-1_all.deb ... 174s Unpacking r-cran-codetools (0.2-19-1) ... 174s Selecting previously unselected package r-cran-bh. 174s Preparing to unpack .../212-r-cran-bh_1.84.0-1_all.deb ... 174s Unpacking r-cran-bh (1.84.0-1) ... 174s Selecting previously unselected package r-bioc-biocparallel. 174s Preparing to unpack .../213-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 174s Unpacking r-bioc-biocparallel (1.36.0-1) ... 174s Selecting previously unselected package r-cran-base64enc. 174s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3_arm64.deb ... 174s Unpacking r-cran-base64enc (0.1-3-3) ... 174s Selecting previously unselected package r-cran-digest. 174s Preparing to unpack .../215-r-cran-digest_0.6.34-1_arm64.deb ... 174s Unpacking r-cran-digest (0.6.34-1) ... 174s Selecting previously unselected package r-cran-ellipsis. 174s Preparing to unpack .../216-r-cran-ellipsis_0.3.2-2_arm64.deb ... 174s Unpacking r-cran-ellipsis (0.3.2-2) ... 174s Selecting previously unselected package r-cran-htmltools. 174s Preparing to unpack .../217-r-cran-htmltools_0.5.7-1_arm64.deb ... 174s Unpacking r-cran-htmltools (0.5.7-1) ... 174s Selecting previously unselected package r-cran-evaluate. 174s Preparing to unpack .../218-r-cran-evaluate_0.23-1_all.deb ... 174s Unpacking r-cran-evaluate (0.23-1) ... 174s Selecting previously unselected package r-cran-xfun. 174s Preparing to unpack .../219-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 174s Unpacking r-cran-xfun (0.41+dfsg-1) ... 174s Selecting previously unselected package r-cran-highr. 174s Preparing to unpack .../220-r-cran-highr_0.10+dfsg-1_all.deb ... 174s Unpacking r-cran-highr (0.10+dfsg-1) ... 174s Selecting previously unselected package r-cran-yaml. 174s Preparing to unpack .../221-r-cran-yaml_2.3.8-1_arm64.deb ... 174s Unpacking r-cran-yaml (2.3.8-1) ... 174s Selecting previously unselected package libjs-mathjax. 174s Preparing to unpack .../222-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 174s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 176s Selecting previously unselected package r-cran-knitr. 176s Preparing to unpack .../223-r-cran-knitr_1.45+dfsg-1_all.deb ... 176s Unpacking r-cran-knitr (1.45+dfsg-1) ... 176s Selecting previously unselected package r-cran-jquerylib. 176s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 176s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 176s Selecting previously unselected package r-cran-fs. 177s Preparing to unpack .../225-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 177s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 177s Selecting previously unselected package r-cran-rappdirs. 177s Preparing to unpack .../226-r-cran-rappdirs_0.3.3-1_arm64.deb ... 177s Unpacking r-cran-rappdirs (0.3.3-1) ... 177s Selecting previously unselected package r-cran-sass. 177s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 177s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 177s Selecting previously unselected package r-cran-bslib. 177s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 177s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 177s Selecting previously unselected package r-cran-fontawesome. 177s Preparing to unpack .../229-r-cran-fontawesome_0.5.2-1_all.deb ... 177s Unpacking r-cran-fontawesome (0.5.2-1) ... 177s Selecting previously unselected package r-cran-tinytex. 178s Preparing to unpack .../230-r-cran-tinytex_0.49-1_all.deb ... 178s Unpacking r-cran-tinytex (0.49-1) ... 178s Selecting previously unselected package libjs-modernizr. 178s Preparing to unpack .../231-libjs-modernizr_2.6.2+ds1-5_all.deb ... 178s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 178s Selecting previously unselected package r-cran-pkgkitten. 178s Preparing to unpack .../232-r-cran-pkgkitten_0.2.3-1_all.deb ... 178s Unpacking r-cran-pkgkitten (0.2.3-1) ... 178s Selecting previously unselected package r-cran-rcpp. 178s Preparing to unpack .../233-r-cran-rcpp_1.0.12-1_arm64.deb ... 178s Unpacking r-cran-rcpp (1.0.12-1) ... 178s Selecting previously unselected package r-cran-later. 178s Preparing to unpack .../234-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 178s Unpacking r-cran-later (1.3.2+dfsg-1) ... 178s Selecting previously unselected package r-cran-promises. 178s Preparing to unpack .../235-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 178s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 178s Selecting previously unselected package r-cran-httpuv. 178s Preparing to unpack .../236-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 178s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 178s Selecting previously unselected package r-cran-xtable. 178s Preparing to unpack .../237-r-cran-xtable_1%3a1.8-4-2_all.deb ... 178s Unpacking r-cran-xtable (1:1.8-4-2) ... 178s Selecting previously unselected package r-cran-sourcetools. 178s Preparing to unpack .../238-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 178s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 179s Selecting previously unselected package r-cran-commonmark. 179s Preparing to unpack .../239-r-cran-commonmark_1.9.1-1_arm64.deb ... 179s Unpacking r-cran-commonmark (1.9.1-1) ... 179s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 179s Preparing to unpack .../240-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 179s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 179s Selecting previously unselected package r-cran-shiny. 179s Preparing to unpack .../241-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 179s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 179s Selecting previously unselected package r-cran-rmarkdown. 179s Preparing to unpack .../242-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 179s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 179s Selecting previously unselected package r-cran-bookdown. 179s Preparing to unpack .../243-r-cran-bookdown_0.37+dfsg-1_all.deb ... 179s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 179s Selecting previously unselected package r-cran-biocmanager. 179s Preparing to unpack .../244-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 179s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 179s Selecting previously unselected package tex-common. 179s Preparing to unpack .../245-tex-common_6.18_all.deb ... 179s Unpacking tex-common (6.18) ... 179s Selecting previously unselected package t1utils. 179s Preparing to unpack .../246-t1utils_1.41-4build2_arm64.deb ... 179s Unpacking t1utils (1.41-4build2) ... 179s Selecting previously unselected package texlive-binaries. 179s Preparing to unpack .../247-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 179s Unpacking texlive-binaries (2023.20230311.66589-9) ... 180s Selecting previously unselected package texlive-base. 180s Preparing to unpack .../248-texlive-base_2023.20240207-1_all.deb ... 180s Unpacking texlive-base (2023.20240207-1) ... 181s Selecting previously unselected package texlive-latex-base. 181s Preparing to unpack .../249-texlive-latex-base_2023.20240207-1_all.deb ... 181s Unpacking texlive-latex-base (2023.20240207-1) ... 181s Selecting previously unselected package texlive-bibtex-extra. 181s Preparing to unpack .../250-texlive-bibtex-extra_2023.20240207-1_all.deb ... 181s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 184s Selecting previously unselected package r-bioc-biocstyle. 184s Preparing to unpack .../251-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 184s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 184s Selecting previously unselected package r-cran-xml. 184s Preparing to unpack .../252-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 184s Unpacking r-cran-xml (3.99-0.16.1-1) ... 184s Selecting previously unselected package r-cran-hms. 184s Preparing to unpack .../253-r-cran-hms_1.1.3-1_all.deb ... 184s Unpacking r-cran-hms (1.1.3-1) ... 184s Selecting previously unselected package r-cran-prettyunits. 184s Preparing to unpack .../254-r-cran-prettyunits_1.2.0-1_all.deb ... 184s Unpacking r-cran-prettyunits (1.2.0-1) ... 184s Selecting previously unselected package r-cran-progress. 184s Preparing to unpack .../255-r-cran-progress_1.2.3-1_all.deb ... 184s Unpacking r-cran-progress (1.2.3-1) ... 184s Selecting previously unselected package r-cran-xml2. 184s Preparing to unpack .../256-r-cran-xml2_1.3.6-1_arm64.deb ... 184s Unpacking r-cran-xml2 (1.3.6-1) ... 184s Selecting previously unselected package r-bioc-biomart. 184s Preparing to unpack .../257-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 184s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 184s Selecting previously unselected package r-bioc-genomicranges. 184s Preparing to unpack .../258-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 184s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 184s Selecting previously unselected package r-bioc-rhtslib. 184s Preparing to unpack .../259-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 184s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 184s Selecting previously unselected package r-bioc-rsamtools. 184s Preparing to unpack .../260-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 184s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 185s Selecting previously unselected package r-cran-matrixstats. 185s Preparing to unpack .../261-r-cran-matrixstats_1.2.0-1_arm64.deb ... 185s Unpacking r-cran-matrixstats (1.2.0-1) ... 185s Selecting previously unselected package r-bioc-matrixgenerics. 185s Preparing to unpack .../262-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 185s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 185s Selecting previously unselected package r-cran-lattice. 185s Preparing to unpack .../263-r-cran-lattice_0.22-5-1_arm64.deb ... 185s Unpacking r-cran-lattice (0.22-5-1) ... 185s Selecting previously unselected package r-cran-matrix. 185s Preparing to unpack .../264-r-cran-matrix_1.6-5-1_arm64.deb ... 185s Unpacking r-cran-matrix (1.6-5-1) ... 185s Selecting previously unselected package r-cran-abind. 185s Preparing to unpack .../265-r-cran-abind_1.4-5-2_all.deb ... 185s Unpacking r-cran-abind (1.4-5-2) ... 185s Selecting previously unselected package r-bioc-s4arrays. 185s Preparing to unpack .../266-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 185s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 185s Selecting previously unselected package r-bioc-sparsearray. 185s Preparing to unpack .../267-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 185s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 185s Selecting previously unselected package r-bioc-delayedarray. 185s Preparing to unpack .../268-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 185s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 185s Selecting previously unselected package r-bioc-summarizedexperiment. 185s Preparing to unpack .../269-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 185s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 185s Selecting previously unselected package r-bioc-genomicalignments. 185s Preparing to unpack .../270-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 185s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 185s Selecting previously unselected package r-cran-rjson. 185s Preparing to unpack .../271-r-cran-rjson_0.2.21-1_arm64.deb ... 185s Unpacking r-cran-rjson (0.2.21-1) ... 185s Selecting previously unselected package r-cran-restfulr. 186s Preparing to unpack .../272-r-cran-restfulr_0.0.15-1_arm64.deb ... 186s Unpacking r-cran-restfulr (0.0.15-1) ... 186s Selecting previously unselected package r-bioc-rtracklayer. 186s Preparing to unpack .../273-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 186s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 187s Selecting previously unselected package r-bioc-bsgenome. 187s Preparing to unpack .../274-r-bioc-bsgenome_1.70.2-1_all.deb ... 187s Unpacking r-bioc-bsgenome (1.70.2-1) ... 187s Selecting previously unselected package r-cran-locfit. 187s Preparing to unpack .../275-r-cran-locfit_1.5-9.8-1_arm64.deb ... 187s Unpacking r-cran-locfit (1.5-9.8-1) ... 187s Selecting previously unselected package r-cran-gtable. 187s Preparing to unpack .../276-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 187s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 187s Selecting previously unselected package r-cran-isoband. 187s Preparing to unpack .../277-r-cran-isoband_0.2.7-1_arm64.deb ... 187s Unpacking r-cran-isoband (0.2.7-1) ... 187s Selecting previously unselected package r-cran-mass. 187s Preparing to unpack .../278-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 187s Unpacking r-cran-mass (7.3-60.0.1-1) ... 187s Selecting previously unselected package r-cran-nlme. 187s Preparing to unpack .../279-r-cran-nlme_3.1.164-1_arm64.deb ... 187s Unpacking r-cran-nlme (3.1.164-1) ... 188s Selecting previously unselected package r-cran-mgcv. 188s Preparing to unpack .../280-r-cran-mgcv_1.9-1-1_arm64.deb ... 188s Unpacking r-cran-mgcv (1.9-1-1) ... 188s Selecting previously unselected package r-cran-farver. 188s Preparing to unpack .../281-r-cran-farver_2.1.1-1_arm64.deb ... 188s Unpacking r-cran-farver (2.1.1-1) ... 188s Selecting previously unselected package r-cran-labeling. 188s Preparing to unpack .../282-r-cran-labeling_0.4.3-1_all.deb ... 188s Unpacking r-cran-labeling (0.4.3-1) ... 188s Selecting previously unselected package r-cran-colorspace. 188s Preparing to unpack .../283-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 188s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 188s Selecting previously unselected package r-cran-munsell. 188s Preparing to unpack .../284-r-cran-munsell_0.5.0-2build1_all.deb ... 188s Unpacking r-cran-munsell (0.5.0-2build1) ... 188s Selecting previously unselected package r-cran-rcolorbrewer. 188s Preparing to unpack .../285-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 188s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 188s Selecting previously unselected package r-cran-viridislite. 188s Preparing to unpack .../286-r-cran-viridislite_0.4.2-2_all.deb ... 188s Unpacking r-cran-viridislite (0.4.2-2) ... 188s Selecting previously unselected package r-cran-scales. 188s Preparing to unpack .../287-r-cran-scales_1.3.0-1_all.deb ... 188s Unpacking r-cran-scales (1.3.0-1) ... 188s Selecting previously unselected package r-cran-ggplot2. 188s Preparing to unpack .../288-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 188s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 188s Selecting previously unselected package r-cran-rcpparmadillo. 189s Preparing to unpack .../289-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ... 189s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 189s Selecting previously unselected package r-bioc-deseq2. 189s Preparing to unpack .../290-r-bioc-deseq2_1.42.0+dfsg-1_arm64.deb ... 189s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 189s Selecting previously unselected package r-cran-statmod. 189s Preparing to unpack .../291-r-cran-statmod_1.5.0-1_arm64.deb ... 189s Unpacking r-cran-statmod (1.5.0-1) ... 189s Selecting previously unselected package r-bioc-limma. 189s Preparing to unpack .../292-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 189s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 189s Selecting previously unselected package r-bioc-edger. 189s Preparing to unpack .../293-r-bioc-edger_4.0.16+dfsg-1_arm64.deb ... 189s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 189s Selecting previously unselected package r-bioc-genomicfeatures. 189s Preparing to unpack .../294-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 189s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 189s Selecting previously unselected package r-cran-hwriter. 189s Preparing to unpack .../295-r-cran-hwriter_1.3.2.1-1_all.deb ... 189s Unpacking r-cran-hwriter (1.3.2.1-1) ... 189s Selecting previously unselected package r-cran-jpeg. 189s Preparing to unpack .../296-r-cran-jpeg_0.1-10-1_arm64.deb ... 189s Unpacking r-cran-jpeg (0.1-10-1) ... 189s Selecting previously unselected package r-cran-deldir. 189s Preparing to unpack .../297-r-cran-deldir_2.0-4-1_arm64.deb ... 189s Unpacking r-cran-deldir (2.0-4-1) ... 189s Selecting previously unselected package r-cran-rcppeigen. 189s Preparing to unpack .../298-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 189s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 190s Selecting previously unselected package r-cran-interp. 190s Preparing to unpack .../299-r-cran-interp_1.1-6-1_arm64.deb ... 190s Unpacking r-cran-interp (1.1-6-1) ... 190s Selecting previously unselected package r-cran-latticeextra. 190s Preparing to unpack .../300-r-cran-latticeextra_0.6-30-1_all.deb ... 190s Unpacking r-cran-latticeextra (0.6-30-1) ... 190s Selecting previously unselected package r-bioc-shortread. 190s Preparing to unpack .../301-r-bioc-shortread_1.60.0-2_arm64.deb ... 190s Unpacking r-bioc-shortread (1.60.0-2) ... 190s Selecting previously unselected package r-cran-runit. 190s Preparing to unpack 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r-cran-jquerylib (0.1.4+dfsg-4) ... 199s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 199s Setting up r-cran-tidyr (1.3.1-1) ... 199s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 199s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 199s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 199s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 199s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 199s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 199s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 199s Setting up r-bioc-annotationdbi (1.64.1-1) ... 199s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 199s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 199s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 199s Setting up r-bioc-genomicalignments (1.38.2-1) ... 199s Setting up r-cran-bookdown (0.37+dfsg-1) ... 199s Setting up r-bioc-rtracklayer (1.62.0-1) ... 199s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 199s Setting up r-bioc-shortread (1.60.0-2) ... 199s Setting up r-bioc-bsgenome (1.70.2-1) ... 199s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 199s Setting up autopkgtest-satdep (0) ... 199s Processing triggers for man-db (2.12.0-3) ... 200s Processing triggers for install-info (7.1-3) ... 200s Processing triggers for libc-bin (2.39-0ubuntu2) ... 200s Processing triggers for tex-common (6.18) ... 200s Running updmap-sys. This may take some time... done. 200s Running mktexlsr /var/lib/texmf ... done. 201s Building format(s) --all. 238s This may take some time... done. 262s (Reading database ... 127349 files and directories currently installed.) 262s Removing autopkgtest-satdep (0) ... 262s autopkgtest [17:35:41]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 262s autopkgtest [17:35:41]: test pkg-r-autopkgtest: [----------------------- 263s Test: Try to load the R library GenomicAlignments 263s 263s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 263s Copyright (C) 2024 The R Foundation for Statistical Computing 263s Platform: aarch64-unknown-linux-gnu (64-bit) 263s 263s R is free software and comes with ABSOLUTELY NO WARRANTY. 263s You are welcome to redistribute it under certain conditions. 263s Type 'license()' or 'licence()' for distribution details. 263s 263s R is a collaborative project with many contributors. 263s Type 'contributors()' for more information and 263s 'citation()' on how to cite R or R packages in publications. 263s 263s Type 'demo()' for some demos, 'help()' for on-line help, or 263s 'help.start()' for an HTML browser interface to help. 263s Type 'q()' to quit R. 263s 264s > library('GenomicAlignments') 264s Loading required package: BiocGenerics 264s 264s Attaching package: ‘BiocGenerics’ 264s 264s The following objects are masked from ‘package:stats’: 264s 264s IQR, mad, sd, var, xtabs 264s 264s The following objects are masked from ‘package:base’: 264s 264s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 264s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 264s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 264s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 264s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 264s table, tapply, union, unique, unsplit, which.max, which.min 264s 264s Loading required package: S4Vectors 264s Loading required package: stats4 265s 265s Attaching package: ‘S4Vectors’ 265s 265s The following object is masked from ‘package:utils’: 265s 265s findMatches 265s 265s The following objects are masked from ‘package:base’: 265s 265s expand.grid, I, unname 265s 265s Loading required package: IRanges 266s Loading required package: GenomeInfoDb 267s Loading required package: GenomicRanges 268s Loading required package: SummarizedExperiment 268s Loading required package: MatrixGenerics 268s Loading required package: matrixStats 269s 269s Attaching package: ‘MatrixGenerics’ 269s 269s The following objects are masked from ‘package:matrixStats’: 269s 269s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 269s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 269s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 269s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 269s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 269s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 269s colWeightedMeans, colWeightedMedians, colWeightedSds, 269s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 269s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 269s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 269s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 269s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 269s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 269s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 269s rowWeightedSds, rowWeightedVars 269s 269s Loading required package: Biobase 269s Welcome to Bioconductor 269s 269s Vignettes contain introductory material; view with 269s 'browseVignettes()'. To cite Bioconductor, see 269s 'citation("Biobase")', and for packages 'citation("pkgname")'. 269s 269s 269s Attaching package: ‘Biobase’ 269s 269s The following object is masked from ‘package:MatrixGenerics’: 269s 269s rowMedians 269s 269s The following objects are masked from ‘package:matrixStats’: 269s 269s anyMissing, rowMedians 269s 273s Loading required package: Biostrings 273s Loading required package: XVector 273s 273s Attaching package: ‘Biostrings’ 273s 273s The following object is masked from ‘package:base’: 273s 273s strsplit 273s 273s Loading required package: Rsamtools 276s > 276s > 280s Other tests are currently unsupported! 280s They will be progressively added. 282s autopkgtest [17:36:01]: test pkg-r-autopkgtest: -----------------------] 282s pkg-r-autopkgtest PASS 282s autopkgtest [17:36:01]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 283s autopkgtest [17:36:02]: @@@@@@@@@@@@@@@@@@@@ summary 283s pkg-r-autopkgtest PASS 294s Creating nova instance adt-noble-arm64-r-bioc-genomicalignments-20240316-173119-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...