0s autopkgtest [13:41:30]: starting date and time: 2024-03-16 13:41:30+0000 0s autopkgtest [13:41:30]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:41:30]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wknewcfd/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-genomicalignments --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-6.secgroup --name adt-noble-arm64-r-bioc-genomicalignments-20240316-134130-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 108s autopkgtest [13:43:18]: testbed dpkg architecture: arm64 109s autopkgtest [13:43:19]: testbed apt version: 2.7.12 109s autopkgtest [13:43:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 109s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 110s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 110s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 110s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 110s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 110s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 110s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 110s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 110s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 110s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 111s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 111s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 111s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 114s Fetched 9092 kB in 2s (3916 kB/s) 114s Reading package lists... 117s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Calculating upgrade... 119s The following packages will be REMOVED: 119s libssl3 119s The following NEW packages will be installed: 119s libssl3t64 119s The following packages have been kept back: 119s curl 119s The following packages will be upgraded: 119s openssl ubuntu-minimal ubuntu-standard 119s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 119s Need to get 2775 kB of archives. 119s After this operation, 72.7 kB of additional disk space will be used. 119s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 120s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 120s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 120s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 121s Fetched 2775 kB in 1s (4104 kB/s) 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 121s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 121s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 121s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 121s wget depends on libssl3 (>= 3.0.0). 121s u-boot-tools depends on libssl3 (>= 3.0.0). 121s tnftp depends on libssl3 (>= 3.0.0). 121s tcpdump depends on libssl3 (>= 3.0.0). 121s systemd-resolved depends on libssl3 (>= 3.0.0). 121s systemd depends on libssl3 (>= 3.0.0). 121s sudo depends on libssl3 (>= 3.0.0). 121s sbsigntool depends on libssl3 (>= 3.0.0). 121s rsync depends on libssl3 (>= 3.0.0). 121s python3-cryptography depends on libssl3 (>= 3.0.0). 121s openssh-server depends on libssl3 (>= 3.0.10). 121s openssh-client depends on libssl3 (>= 3.0.10). 121s mtd-utils depends on libssl3 (>= 3.0.0). 121s mokutil depends on libssl3 (>= 3.0.0). 121s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 121s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 121s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 121s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 121s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 121s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 121s libnvme1 depends on libssl3 (>= 3.0.0). 121s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 121s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 121s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 121s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 121s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 121s kmod depends on libssl3 (>= 3.0.0). 121s dhcpcd-base depends on libssl3 (>= 3.0.0). 121s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 121s 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 121s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 122s Selecting previously unselected package libssl3t64:arm64. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 122s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 122s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 122s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 122s Unpacking ubuntu-minimal (1.536) over (1.535) ... 122s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 122s Unpacking ubuntu-standard (1.536) over (1.535) ... 122s Setting up ubuntu-minimal (1.536) ... 122s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 122s Setting up ubuntu-standard (1.536) ... 122s Setting up openssl (3.0.13-0ubuntu1) ... 122s Processing triggers for man-db (2.12.0-3) ... 123s Processing triggers for libc-bin (2.39-0ubuntu2) ... 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 124s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 125s sh: Attempting to set up Debian/Ubuntu apt sources automatically 125s sh: Distribution appears to be Ubuntu 126s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s eatmydata is already the newest version (131-1). 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s dbus is already the newest version (1.14.10-4ubuntu1). 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s rng-tools-debian is already the newest version (2.4). 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s The following packages will be REMOVED: 131s cloud-init* python3-configobj* python3-debconf* 132s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 132s After this operation, 3252 kB disk space will be freed. 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 132s Removing cloud-init (24.1.1-0ubuntu1) ... 132s Removing python3-configobj (5.0.8-3) ... 133s Removing python3-debconf (1.5.86) ... 133s Processing triggers for man-db (2.12.0-3) ... 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74371 files and directories currently installed.) 133s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 134s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 134s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 134s invoke-rc.d: policy-rc.d denied execution of try-restart. 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 135s linux-generic is already the newest version (6.8.0-11.11+1). 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 135s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 136s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 137s Reading package lists... 137s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Calculating upgrade... 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s autopkgtest [13:43:50]: rebooting testbed after setup commands that affected boot 166s autopkgtest [13:44:16]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 169s autopkgtest [13:44:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicalignments 172s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicalignments 1.38.2-1 (dsc) [2416 B] 172s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicalignments 1.38.2-1 (tar) [2266 kB] 172s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicalignments 1.38.2-1 (diff) [7556 B] 172s gpgv: Signature made Thu Jan 25 16:02:39 2024 UTC 172s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 172s gpgv: issuer "tille@debian.org" 172s gpgv: Can't check signature: No public key 172s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicalignments_1.38.2-1.dsc: no acceptable signature found 173s autopkgtest [13:44:23]: testing package r-bioc-genomicalignments version 1.38.2-1 173s autopkgtest [13:44:23]: build not needed 174s autopkgtest [13:44:24]: test pkg-r-autopkgtest: preparing testbed 175s Reading package lists... 176s Building dependency tree... 176s Reading state information... 176s Starting pkgProblemResolver with broken count: 0 176s Starting 2 pkgProblemResolver with broken count: 0 176s Done 177s The following additional packages will be installed: 177s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 177s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 177s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 177s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 177s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 177s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 177s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 177s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 177s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 177s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 177s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 177s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 177s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 177s libjs-highlight.js libjs-jquery libjs-jquery-datatables 177s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 177s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 177s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 177s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 177s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 177s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 177s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 177s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 177s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 177s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 177s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 177s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 177s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 177s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 177s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 177s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 177s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 177s r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 177s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 177s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 177s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 177s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 177s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 177s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 177s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 177s r-cran-cachem r-cran-cli r-cran-codetools r-cran-colorspace 177s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 177s r-cran-dbplyr r-cran-deldir r-cran-digest r-cran-dplyr r-cran-ellipsis 177s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 177s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 177s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 177s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 177s r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg 177s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 177s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 177s r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass 177s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 177s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig 177s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 177s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 177s r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl 177s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 177s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 177s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 177s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 177s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 177s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 177s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 177s x11-common xdg-utils zip zlib1g-dev 177s Suggested packages: 177s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 177s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 177s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 177s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 177s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 177s libboost-context1.83-dev libboost-contract1.83-dev 177s libboost-coroutine1.83-dev libboost-date-time1.83-dev 177s libboost-exception1.83-dev libboost-fiber1.83-dev 177s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 177s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 177s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 177s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 177s libboost-numpy1.83-dev libboost-program-options1.83-dev 177s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 177s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 177s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 177s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 177s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 177s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 177s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 177s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 177s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 177s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 177s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 177s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 177s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 177s r-bioc-affy r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 177s r-bioc-variantannotation r-cran-batchtools r-cran-data.table r-cran-mockery 177s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 177s r-bioc-delayedmatrixstats r-cran-pheatmap r-bioc-tximport r-bioc-tximeta 177s r-bioc-tximportdata r-cran-readr r-cran-pbapply r-bioc-glmgampoi 177s r-bioc-rhdf5 r-cran-seuratobject r-cran-r.utils r-bioc-ensembldb 177s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-annotationhub 177s r-bioc-dexseq r-cran-biasedurn r-cran-ellipse r-cran-gplots 177s r-bioc-sparsematrixstats r-cran-roxygen2 r-cran-ff r-cran-covr 177s r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs 177s r-cran-viridis r-cran-rstudioapi r-cran-rmysql r-cran-polyclip 177s r-cran-lubridate r-cran-sp r-cran-gridextra r-cran-scatterplot3d 177s r-cran-magick r-cran-sf r-cran-getopt r-cran-gam r-cran-formattable 177s r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units 177s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-spelling 177s r-cran-bench r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild 177s r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript gv 177s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 177s hintview texlive-latex-base-doc wp2latex 177s Recommended packages: 177s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 177s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 177s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 177s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-thematic 177s r-cran-callr r-cran-covr r-cran-mockery r-cran-processx r-cran-ps 177s r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio r-cran-decor 177s r-cran-desc r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-rpostgresql 177s r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-survival 177s r-cran-pkgload r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps 177s r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart 177s r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-waldo r-cran-cairo 177s r-cran-markdown r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick 177s r-cran-reticulate r-cran-rgl r-cran-tikzdevice node-highlight.js 177s r-cran-lintr r-cran-tidyverse r-cran-r.devices r-cran-sodium 177s r-cran-lubridate r-cran-future r-cran-usethis r-cran-dygraphs r-cran-dbitest 177s r-cran-gert r-cran-gh r-cran-rvest r-cran-dichromat r-cran-data.table 177s r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 177s lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 177s x11-utils x11-xserver-utils 177s The following NEW packages will be installed: 177s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 177s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 177s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 177s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 177s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 177s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 177s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 177s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 177s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 177s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 177s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 177s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 177s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 177s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 177s libjs-highlight.js libjs-jquery libjs-jquery-datatables 177s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 177s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 177s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 177s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 177s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 177s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 177s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 177s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 177s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 177s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 177s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 177s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 177s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 177s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 177s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 177s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 177s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 177s r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 177s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 177s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 177s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 177s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 177s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 177s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 177s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 177s r-cran-cachem r-cran-cli r-cran-codetools r-cran-colorspace 177s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 177s r-cran-dbplyr r-cran-deldir r-cran-digest r-cran-dplyr r-cran-ellipsis 177s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 177s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 177s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 177s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 177s r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg 177s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 177s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 177s r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass 177s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 177s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig 177s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 177s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 177s r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl 177s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 177s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 177s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 177s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 177s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 177s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 177s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 177s x11-common xdg-utils zip zlib1g-dev 177s 0 upgraded, 303 newly installed, 0 to remove and 0 not upgraded. 177s Need to get 455 MB/455 MB of archives. 177s After this operation, 1399 MB of additional disk space will be used. 177s Get:1 /tmp/autopkgtest.15A3Ds/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [796 B] 177s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 177s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 178s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 178s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 178s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 178s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 178s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 178s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 178s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 178s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 178s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 178s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 178s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 178s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 178s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 178s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 178s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 178s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 178s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 178s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 178s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 178s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 178s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 178s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 179s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 179s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 179s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 179s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 179s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 179s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 179s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 179s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 179s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 179s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 179s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 179s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 179s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 179s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 179s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 179s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 179s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 179s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 179s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 179s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 179s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 179s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 179s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 179s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 179s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 179s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 179s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 179s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 179s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 179s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 179s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 179s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 179s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 180s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 180s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 180s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 180s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 180s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 180s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 180s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 180s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 180s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 180s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 180s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 180s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 180s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 180s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 180s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 180s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 180s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 180s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 180s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 180s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 180s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 180s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 180s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 180s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 180s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 180s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 180s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 180s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 180s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 180s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 180s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 180s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 180s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 180s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 180s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 180s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 180s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 181s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 181s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 181s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 181s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 181s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 181s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 181s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 181s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 181s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 181s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 181s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 181s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 181s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 181s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 181s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 181s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 181s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 181s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 181s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 181s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 181s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 181s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 181s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 181s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 181s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 181s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 181s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 181s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 181s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 181s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 181s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 181s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 181s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 181s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 181s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 181s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 181s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 181s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 181s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 182s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 182s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 182s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 182s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 182s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 182s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 182s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 182s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 182s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 182s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 183s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 183s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 183s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 183s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 183s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 183s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 183s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 183s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 183s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 184s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 184s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 184s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 184s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 184s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 184s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 184s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 184s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 184s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 184s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 184s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 184s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 184s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 184s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 184s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 184s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 184s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 184s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 184s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 184s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 184s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 184s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 184s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 184s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 184s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 184s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 184s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 184s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 184s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 184s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 184s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 185s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 185s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 185s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 185s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 185s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 185s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 185s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 185s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 185s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 185s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 185s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 185s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 185s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 185s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 185s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 186s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 186s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 186s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 186s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 186s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 186s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 186s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 186s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 186s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 186s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 186s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 186s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 186s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 186s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 186s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 186s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 186s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 186s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 186s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 186s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 186s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 186s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 186s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 186s Get:223 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 187s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 187s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 187s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 187s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 187s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 187s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 187s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 187s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 187s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 187s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 187s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 187s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 187s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 187s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 187s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 187s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 187s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 187s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 187s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 187s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 187s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 187s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 187s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 187s Get:247 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 187s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 187s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 188s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 188s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 190s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 190s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 190s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 190s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 190s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 190s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 190s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 190s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 190s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 190s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 190s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 190s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 190s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 190s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 190s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 190s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 190s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 190s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 190s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 190s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 190s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 190s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 190s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 190s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 190s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 190s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 190s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 190s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 191s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 191s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 191s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 191s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 191s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 191s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 191s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 191s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 191s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 191s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 191s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 191s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq2 arm64 1.42.0+dfsg-1 [1218 kB] 191s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 191s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 191s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 191s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 191s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 191s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 191s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 191s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 191s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 191s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 191s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB] 191s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 193s Preconfiguring packages ... 193s Fetched 455 MB in 14s (31.7 MB/s) 193s Selecting previously unselected package libc-dev-bin. 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74316 files and directories currently installed.) 193s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 194s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 194s Selecting previously unselected package linux-libc-dev:arm64. 194s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 194s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 194s Selecting previously unselected package libcrypt-dev:arm64. 194s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 194s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 194s Selecting previously unselected package libtirpc-dev:arm64. 194s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 194s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 194s Selecting previously unselected package libnsl-dev:arm64. 194s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 194s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 194s Selecting previously unselected package rpcsvc-proto. 194s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 194s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 194s Selecting previously unselected package libc6-dev:arm64. 194s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 194s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 194s Selecting previously unselected package libisl23:arm64. 194s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 194s Unpacking libisl23:arm64 (0.26-3) ... 194s Selecting previously unselected package libmpc3:arm64. 194s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 194s Unpacking libmpc3:arm64 (1.3.1-1) ... 194s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 194s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package cpp-13. 194s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package cpp-aarch64-linux-gnu. 194s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 194s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 194s Selecting previously unselected package cpp. 194s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 194s Unpacking cpp (4:13.2.0-7ubuntu1) ... 194s Selecting previously unselected package libcc1-0:arm64. 194s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 194s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 195s Selecting previously unselected package libgomp1:arm64. 195s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 195s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 195s Selecting previously unselected package libitm1:arm64. 195s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 195s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 195s Selecting previously unselected package libatomic1:arm64. 195s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 195s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 195s Selecting previously unselected package libasan8:arm64. 195s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 195s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 195s Selecting previously unselected package liblsan0:arm64. 195s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 195s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 195s Selecting previously unselected package libtsan2:arm64. 195s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 195s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 195s Selecting previously unselected package libubsan1:arm64. 195s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 195s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 195s Selecting previously unselected package libhwasan0:arm64. 195s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 195s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 195s Selecting previously unselected package libgcc-13-dev:arm64. 195s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 195s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 195s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 196s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 196s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package gcc-13. 196s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 196s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package gcc-aarch64-linux-gnu. 196s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 196s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 196s Selecting previously unselected package gcc. 196s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 196s Unpacking gcc (4:13.2.0-7ubuntu1) ... 196s Selecting previously unselected package libstdc++-13-dev:arm64. 196s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 196s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package g++-13-aarch64-linux-gnu. 196s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 196s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package g++-13. 197s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 197s Unpacking g++-13 (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package g++-aarch64-linux-gnu. 197s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 197s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 197s Selecting previously unselected package g++. 197s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 197s Unpacking g++ (4:13.2.0-7ubuntu1) ... 197s Selecting previously unselected package build-essential. 197s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 197s Unpacking build-essential (12.10ubuntu1) ... 197s Selecting previously unselected package dctrl-tools. 197s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 197s Unpacking dctrl-tools (2.24-3build2) ... 197s Selecting previously unselected package fonts-dejavu-mono. 197s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 197s Unpacking fonts-dejavu-mono (2.37-8) ... 198s Selecting previously unselected package fonts-dejavu-core. 198s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 198s Unpacking fonts-dejavu-core (2.37-8) ... 198s Selecting previously unselected package fontconfig-config. 198s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 198s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 198s Selecting previously unselected package libfontconfig1:arm64. 198s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 198s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 198s Selecting previously unselected package fontconfig. 198s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 198s Unpacking fontconfig (2.15.0-1ubuntu1) ... 198s Selecting previously unselected package fonts-font-awesome. 198s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 198s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 198s Selecting previously unselected package fonts-glyphicons-halflings. 198s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 198s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 198s Selecting previously unselected package fonts-lmodern. 198s Preparing to unpack .../041-fonts-lmodern_2.005-1_all.deb ... 198s Unpacking fonts-lmodern (2.005-1) ... 198s Selecting previously unselected package fonts-mathjax. 198s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 198s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 198s Selecting previously unselected package libgfortran5:arm64. 198s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libgfortran-13-dev:arm64. 198s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 198s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package gfortran-13. 199s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package gfortran-aarch64-linux-gnu. 199s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 199s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 199s Selecting previously unselected package gfortran. 199s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 199s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 199s Selecting previously unselected package icu-devtools. 199s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_arm64.deb ... 199s Unpacking icu-devtools (74.2-1ubuntu1) ... 199s Selecting previously unselected package javascript-common. 199s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 199s Unpacking javascript-common (11+nmu1) ... 199s Selecting previously unselected package libio-string-perl. 199s Preparing to unpack .../051-libio-string-perl_1.08-4_all.deb ... 199s Unpacking libio-string-perl (1.08-4) ... 199s Selecting previously unselected package liblatex-tounicode-perl. 199s Preparing to unpack .../052-liblatex-tounicode-perl_0.54-2_all.deb ... 199s Unpacking liblatex-tounicode-perl (0.54-2) ... 199s Selecting previously unselected package libbibtex-parser-perl. 199s Preparing to unpack .../053-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 199s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 199s Selecting previously unselected package libblas3:arm64. 199s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 199s Unpacking libblas3:arm64 (3.12.0-3) ... 199s Selecting previously unselected package libblas-dev:arm64. 199s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 199s Unpacking libblas-dev:arm64 (3.12.0-3) ... 199s Selecting previously unselected package libboost1.83-dev:arm64. 199s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 199s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 201s Selecting previously unselected package libboost-dev:arm64. 201s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 201s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 201s Selecting previously unselected package libbz2-dev:arm64. 201s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 201s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 201s Selecting previously unselected package libpixman-1-0:arm64. 201s Preparing to unpack .../059-libpixman-1-0_0.42.2-1_arm64.deb ... 201s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 201s Selecting previously unselected package libxcb-render0:arm64. 201s Preparing to unpack .../060-libxcb-render0_1.15-1_arm64.deb ... 201s Unpacking libxcb-render0:arm64 (1.15-1) ... 201s Selecting previously unselected package libxcb-shm0:arm64. 201s Preparing to unpack .../061-libxcb-shm0_1.15-1_arm64.deb ... 201s Unpacking libxcb-shm0:arm64 (1.15-1) ... 201s Selecting previously unselected package libxrender1:arm64. 201s Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 201s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 201s Selecting previously unselected package libcairo2:arm64. 201s Preparing to unpack .../063-libcairo2_1.18.0-1_arm64.deb ... 201s Unpacking libcairo2:arm64 (1.18.0-1) ... 201s Selecting previously unselected package libdatrie1:arm64. 201s Preparing to unpack .../064-libdatrie1_0.2.13-3_arm64.deb ... 201s Unpacking libdatrie1:arm64 (0.2.13-3) ... 201s Selecting previously unselected package libdeflate0:arm64. 201s Preparing to unpack .../065-libdeflate0_1.19-1_arm64.deb ... 201s Unpacking libdeflate0:arm64 (1.19-1) ... 201s Selecting previously unselected package libgraphite2-3:arm64. 201s Preparing to unpack .../066-libgraphite2-3_1.3.14-2_arm64.deb ... 201s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 201s Selecting previously unselected package libharfbuzz0b:arm64. 201s Preparing to unpack .../067-libharfbuzz0b_8.3.0-2_arm64.deb ... 201s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 201s Selecting previously unselected package x11-common. 201s Preparing to unpack .../068-x11-common_1%3a7.7+23ubuntu2_all.deb ... 201s Unpacking x11-common (1:7.7+23ubuntu2) ... 201s Selecting previously unselected package libice6:arm64. 201s Preparing to unpack .../069-libice6_2%3a1.0.10-1build2_arm64.deb ... 201s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 201s Selecting previously unselected package libicu-dev:arm64. 201s Preparing to unpack .../070-libicu-dev_74.2-1ubuntu1_arm64.deb ... 201s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 201s Selecting previously unselected package libjpeg-turbo8:arm64. 201s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 201s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 201s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 201s Preparing to unpack .../072-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 201s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 201s Selecting previously unselected package libjpeg8:arm64. 201s Preparing to unpack .../073-libjpeg8_8c-2ubuntu11_arm64.deb ... 201s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 202s Selecting previously unselected package libjpeg8-dev:arm64. 202s Preparing to unpack .../074-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 202s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 202s Selecting previously unselected package libjpeg-dev:arm64. 202s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 202s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 202s Selecting previously unselected package libjs-bootstrap. 202s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 202s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 202s Selecting previously unselected package libjs-popper.js. 202s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 202s Unpacking libjs-popper.js (1.16.1+ds-6) ... 202s Selecting previously unselected package libjs-bootstrap4. 202s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 202s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 202s Selecting previously unselected package libjs-d3. 202s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 202s Unpacking libjs-d3 (3.5.17-4) ... 202s Selecting previously unselected package libjs-es5-shim. 202s Preparing to unpack .../080-libjs-es5-shim_4.6.7-2_all.deb ... 202s Unpacking libjs-es5-shim (4.6.7-2) ... 202s Selecting previously unselected package libjs-highlight.js. 202s Preparing to unpack .../081-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 202s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 202s Selecting previously unselected package libjs-jquery. 202s Preparing to unpack .../082-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 202s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 202s Selecting previously unselected package libjs-jquery-datatables. 202s Preparing to unpack .../083-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 202s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 202s Selecting previously unselected package libjs-sifter.js. 202s Preparing to unpack .../084-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 202s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 202s Selecting previously unselected package libjs-microplugin.js. 202s Preparing to unpack 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libpcre2-posix3:arm64. 203s Preparing to unpack .../106-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 203s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 203s Selecting previously unselected package libpcre2-dev:arm64. 203s Preparing to unpack .../107-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 203s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 203s Selecting previously unselected package libpkgconf3:arm64. 203s Preparing to unpack .../108-libpkgconf3_1.8.1-2_arm64.deb ... 203s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 203s Selecting previously unselected package zlib1g-dev:arm64. 203s Preparing to unpack .../109-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 203s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 203s Selecting previously unselected package libpng-dev:arm64. 203s Preparing to unpack .../110-libpng-dev_1.6.43-1_arm64.deb ... 203s Unpacking libpng-dev:arm64 (1.6.43-1) ... 203s Selecting previously unselected package libpotrace0:arm64. 203s Preparing to unpack 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Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 203s Selecting previously unselected package libtcl8.6:arm64. 203s Preparing to unpack .../117-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 203s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 203s Selecting previously unselected package libteckit0:arm64. 203s Preparing to unpack .../118-libteckit0_2.5.12+ds1-1_arm64.deb ... 203s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 203s Selecting previously unselected package libtexlua53-5:arm64. 203s Preparing to unpack .../119-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 203s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 204s Selecting previously unselected package libjbig0:arm64. 204s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 204s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 204s Selecting previously unselected package libwebp7:arm64. 204s Preparing to unpack .../121-libwebp7_1.3.2-0.4_arm64.deb ... 204s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 204s Selecting previously unselected package libtiff6:arm64. 204s Preparing to unpack .../122-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 204s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 204s Selecting previously unselected package libxft2:arm64. 204s Preparing to unpack .../123-libxft2_2.3.6-1_arm64.deb ... 204s Unpacking libxft2:arm64 (2.3.6-1) ... 204s Selecting previously unselected package libxss1:arm64. 204s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build2_arm64.deb ... 204s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 204s Selecting previously unselected package libtk8.6:arm64. 204s Preparing to unpack .../125-libtk8.6_8.6.13-2_arm64.deb ... 204s Unpacking libtk8.6:arm64 (8.6.13-2) ... 204s Selecting previously unselected package libxt6:arm64. 204s Preparing to unpack .../126-libxt6_1%3a1.2.1-1.1_arm64.deb ... 204s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 204s Selecting previously unselected package libxmu6:arm64. 204s Preparing to unpack .../127-libxmu6_2%3a1.1.3-3_arm64.deb ... 204s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 204s Selecting previously unselected package libxpm4:arm64. 204s Preparing to unpack .../128-libxpm4_1%3a3.5.17-1_arm64.deb ... 204s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 204s Selecting previously unselected package libxaw7:arm64. 204s Preparing to unpack .../129-libxaw7_2%3a1.0.14-1_arm64.deb ... 204s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 204s Selecting previously unselected package libxi6:arm64. 204s Preparing to unpack .../130-libxi6_2%3a1.8.1-1_arm64.deb ... 204s Unpacking libxi6:arm64 (2:1.8.1-1) ... 204s Selecting previously unselected package libzzip-0-13:arm64. 204s Preparing to unpack .../131-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 204s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 204s Selecting previously unselected package zip. 204s Preparing to unpack .../132-zip_3.0-13_arm64.deb ... 204s Unpacking zip (3.0-13) ... 204s Selecting previously unselected package unzip. 204s Preparing to unpack .../133-unzip_6.0-28ubuntu3_arm64.deb ... 204s Unpacking unzip (6.0-28ubuntu3) ... 204s Selecting previously unselected package xdg-utils. 204s Preparing to unpack .../134-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 204s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 204s Selecting previously unselected package r-base-core. 204s Preparing to unpack .../135-r-base-core_4.3.2-1build1_arm64.deb ... 204s Unpacking r-base-core (4.3.2-1build1) ... 205s Selecting previously unselected package r-cran-littler. 205s Preparing to unpack .../136-r-cran-littler_0.3.19-1_arm64.deb ... 205s Unpacking r-cran-littler (0.3.19-1) ... 205s Selecting previously unselected package littler. 205s Preparing to unpack .../137-littler_0.3.19-1_all.deb ... 205s Unpacking littler (0.3.19-1) ... 205s Selecting previously unselected package node-bootstrap-sass. 205s Preparing to unpack .../138-node-bootstrap-sass_3.4.3-2_all.deb ... 205s Unpacking node-bootstrap-sass (3.4.3-2) ... 205s Selecting previously unselected package node-html5shiv. 205s Preparing to unpack .../139-node-html5shiv_3.7.3+dfsg-5_all.deb ... 205s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 205s Selecting previously unselected package node-normalize.css. 205s Preparing to unpack .../140-node-normalize.css_8.0.1-5_all.deb ... 205s Unpacking node-normalize.css (8.0.1-5) ... 205s Selecting previously unselected package pandoc-data. 205s Preparing to unpack .../141-pandoc-data_3.1.3-1_all.deb ... 205s Unpacking pandoc-data (3.1.3-1) ... 205s Selecting previously unselected package pandoc. 205s Preparing to unpack .../142-pandoc_3.1.3+ds-2_arm64.deb ... 205s Unpacking pandoc (3.1.3+ds-2) ... 206s Selecting previously unselected package pkgconf-bin. 206s Preparing to unpack .../143-pkgconf-bin_1.8.1-2_arm64.deb ... 206s Unpacking pkgconf-bin (1.8.1-2) ... 206s Selecting previously unselected package pkgconf:arm64. 207s Preparing to unpack .../144-pkgconf_1.8.1-2_arm64.deb ... 207s Unpacking pkgconf:arm64 (1.8.1-2) ... 207s Selecting previously unselected package pkg-config:arm64. 207s Preparing to unpack .../145-pkg-config_1.8.1-2_arm64.deb ... 207s Unpacking pkg-config:arm64 (1.8.1-2) ... 207s Selecting previously unselected package liblzma-dev:arm64. 207s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 207s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 207s Selecting previously unselected package r-base-dev. 207s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ... 207s Unpacking r-base-dev (4.3.2-1build1) ... 207s Selecting previously unselected package pkg-r-autopkgtest. 207s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 207s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 207s Selecting previously unselected package r-bioc-biocgenerics. 207s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 207s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 207s Selecting previously unselected package r-bioc-biobase. 207s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 207s Unpacking r-bioc-biobase (2.62.0-1) ... 207s Selecting previously unselected package r-bioc-s4vectors. 207s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 207s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 207s Selecting previously unselected package r-bioc-iranges. 207s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 207s Unpacking r-bioc-iranges (2.36.0-1) ... 207s Selecting previously unselected package r-cran-dbi. 208s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 208s Unpacking r-cran-dbi (1.2.2-1) ... 208s Selecting previously unselected package r-cran-bit. 208s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 208s Unpacking r-cran-bit (4.0.5-1) ... 208s Selecting previously unselected package r-cran-bit64. 208s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 208s Unpacking r-cran-bit64 (4.0.5-1) ... 208s Selecting previously unselected package r-cran-rlang. 208s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 208s Unpacking r-cran-rlang (1.1.3-1) ... 208s Selecting previously unselected package r-cran-cli. 208s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 208s Unpacking r-cran-cli (3.6.2-1) ... 208s Selecting previously unselected package r-cran-glue. 208s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 208s Unpacking r-cran-glue (1.7.0-1) ... 208s Selecting previously unselected package r-cran-lifecycle. 208s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 208s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 208s Selecting previously unselected package r-cran-vctrs. 208s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 208s Unpacking r-cran-vctrs (0.6.5-1) ... 208s Selecting previously unselected package r-cran-blob. 208s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 208s Unpacking r-cran-blob (1.2.4-1) ... 208s Selecting previously unselected package r-cran-fastmap. 208s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 208s Unpacking r-cran-fastmap (1.1.1-1) ... 208s Selecting previously unselected package r-cran-cachem. 208s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 208s Unpacking r-cran-cachem (1.0.8-1) ... 208s Selecting previously unselected package r-cran-memoise. 208s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 208s Unpacking r-cran-memoise (2.0.1-1) ... 208s Selecting previously unselected package r-cran-pkgconfig. 208s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 208s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 208s Selecting previously unselected package r-cran-plogr. 208s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 208s Unpacking r-cran-plogr (0.2.0-3build1) ... 208s Selecting previously unselected package r-cran-cpp11. 209s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 209s Unpacking r-cran-cpp11 (0.4.7-1) ... 209s Selecting previously unselected package r-cran-rsqlite. 209s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 209s Unpacking r-cran-rsqlite (2.3.4-1) ... 209s Selecting previously unselected package r-cran-curl. 209s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 209s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 209s Selecting previously unselected package r-cran-jsonlite. 209s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 209s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 209s Selecting previously unselected package r-cran-mime. 209s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 209s Unpacking r-cran-mime (0.12-1) ... 209s Selecting previously unselected package r-cran-sys. 209s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 209s Unpacking r-cran-sys (3.4.2-1) ... 209s Selecting previously unselected package r-cran-askpass. 209s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 209s Unpacking r-cran-askpass (1.2.0-1) ... 209s Selecting previously unselected package r-cran-openssl. 210s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 210s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 210s Selecting previously unselected package r-cran-r6. 210s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 210s Unpacking r-cran-r6 (2.5.1-1) ... 210s Selecting previously unselected package r-cran-httr. 210s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 210s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 210s Selecting previously unselected package r-cran-png. 210s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 210s Unpacking r-cran-png (0.1-8-1) ... 210s Selecting previously unselected package r-bioc-zlibbioc. 210s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 210s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 210s Selecting previously unselected package r-bioc-xvector. 211s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 211s Unpacking r-bioc-xvector (0.42.0-1) ... 211s Selecting previously unselected package r-cran-bitops. 211s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 211s Unpacking r-cran-bitops (1.0-7-1) ... 211s Selecting previously unselected package r-cran-rcurl. 211s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 211s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 211s Selecting previously unselected package r-bioc-genomeinfodbdata. 211s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 211s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 211s Selecting previously unselected package r-bioc-genomeinfodb. 211s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 211s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 211s Selecting previously unselected package r-cran-crayon. 211s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 211s Unpacking r-cran-crayon (1.5.2-1) ... 211s Selecting previously unselected package r-bioc-biostrings. 211s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 211s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 212s Selecting previously unselected package r-bioc-keggrest. 212s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 212s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 212s Selecting previously unselected package r-bioc-annotationdbi. 212s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 212s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 212s Selecting previously unselected package r-cran-generics. 212s Preparing to unpack .../188-r-cran-generics_0.1.3-1_all.deb ... 212s Unpacking r-cran-generics (0.1.3-1) ... 212s Selecting previously unselected package r-cran-magrittr. 212s Preparing to unpack .../189-r-cran-magrittr_2.0.3-1_arm64.deb ... 212s Unpacking r-cran-magrittr (2.0.3-1) ... 212s Selecting previously unselected package r-cran-fansi. 212s Preparing to unpack .../190-r-cran-fansi_1.0.5-1_arm64.deb ... 212s Unpacking r-cran-fansi (1.0.5-1) ... 212s Selecting previously unselected package r-cran-utf8. 212s Preparing to unpack .../191-r-cran-utf8_1.2.4-1_arm64.deb ... 212s Unpacking r-cran-utf8 (1.2.4-1) ... 212s Selecting previously unselected package r-cran-pillar. 212s Preparing to unpack .../192-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 212s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 212s Selecting previously unselected package r-cran-tibble. 212s Preparing to unpack .../193-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 212s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 212s Selecting previously unselected package r-cran-withr. 212s Preparing to unpack .../194-r-cran-withr_2.5.0-1_all.deb ... 212s Unpacking r-cran-withr (2.5.0-1) ... 212s Selecting previously unselected package r-cran-tidyselect. 212s Preparing to unpack .../195-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 212s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 212s Selecting previously unselected package r-cran-dplyr. 212s Preparing to unpack .../196-r-cran-dplyr_1.1.4-1_arm64.deb ... 212s Unpacking r-cran-dplyr (1.1.4-1) ... 212s Selecting previously unselected package r-cran-purrr. 212s Preparing to unpack .../197-r-cran-purrr_1.0.2-1_arm64.deb ... 212s Unpacking r-cran-purrr (1.0.2-1) ... 212s Selecting previously unselected package r-cran-stringi. 212s Preparing to unpack .../198-r-cran-stringi_1.8.3-1_arm64.deb ... 212s Unpacking r-cran-stringi (1.8.3-1) ... 212s Selecting previously unselected package r-cran-stringr. 212s Preparing to unpack .../199-r-cran-stringr_1.5.1-1_all.deb ... 212s Unpacking r-cran-stringr (1.5.1-1) ... 212s Selecting previously unselected package r-cran-tidyr. 212s Preparing to unpack .../200-r-cran-tidyr_1.3.1-1_arm64.deb ... 212s Unpacking r-cran-tidyr (1.3.1-1) ... 212s Selecting previously unselected package r-cran-dbplyr. 212s Preparing to unpack .../201-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 212s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 213s Selecting previously unselected package r-cran-filelock. 213s Preparing to unpack .../202-r-cran-filelock_1.0.3-1_arm64.deb ... 213s Unpacking r-cran-filelock (1.0.3-1) ... 213s Selecting previously unselected package r-bioc-biocfilecache. 213s Preparing to unpack .../203-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 213s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 213s Selecting previously unselected package r-bioc-biocio. 213s Preparing to unpack .../204-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 213s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 213s Selecting previously unselected package r-cran-formatr. 213s Preparing to unpack .../205-r-cran-formatr_1.14-1_all.deb ... 213s Unpacking r-cran-formatr (1.14-1) ... 213s Selecting previously unselected package r-cran-lambda.r. 213s Preparing to unpack .../206-r-cran-lambda.r_1.2.4-2build1_all.deb ... 213s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 213s Selecting previously unselected package r-cran-futile.options. 213s Preparing to unpack .../207-r-cran-futile.options_1.0.1-3build1_all.deb ... 213s Unpacking r-cran-futile.options (1.0.1-3build1) ... 213s Selecting previously unselected package r-cran-futile.logger. 213s Preparing to unpack .../208-r-cran-futile.logger_1.4.3-4build1_all.deb ... 213s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 213s Selecting previously unselected package r-cran-snow. 213s Preparing to unpack .../209-r-cran-snow_1%3a0.4.4-2_all.deb ... 213s Unpacking r-cran-snow (1:0.4.4-2) ... 213s Selecting previously unselected package r-cran-codetools. 213s Preparing to unpack .../210-r-cran-codetools_0.2-19-1_all.deb ... 213s Unpacking r-cran-codetools (0.2-19-1) ... 213s Selecting previously unselected package r-cran-bh. 213s Preparing to unpack .../211-r-cran-bh_1.84.0-1_all.deb ... 213s Unpacking r-cran-bh (1.84.0-1) ... 213s Selecting previously unselected package r-bioc-biocparallel. 213s Preparing to unpack .../212-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 213s Unpacking r-bioc-biocparallel (1.36.0-1) ... 213s Selecting previously unselected package r-cran-base64enc. 213s Preparing to unpack .../213-r-cran-base64enc_0.1-3-3_arm64.deb ... 213s Unpacking r-cran-base64enc (0.1-3-3) ... 213s Selecting previously unselected package r-cran-digest. 213s Preparing to unpack .../214-r-cran-digest_0.6.34-1_arm64.deb ... 213s Unpacking r-cran-digest (0.6.34-1) ... 213s Selecting previously unselected package r-cran-ellipsis. 213s Preparing to unpack .../215-r-cran-ellipsis_0.3.2-2_arm64.deb ... 213s Unpacking r-cran-ellipsis (0.3.2-2) ... 213s Selecting previously unselected package r-cran-htmltools. 213s Preparing to unpack .../216-r-cran-htmltools_0.5.7-1_arm64.deb ... 213s Unpacking r-cran-htmltools (0.5.7-1) ... 213s Selecting previously unselected package r-cran-evaluate. 213s Preparing to unpack .../217-r-cran-evaluate_0.23-1_all.deb ... 213s Unpacking r-cran-evaluate (0.23-1) ... 213s Selecting previously unselected package r-cran-xfun. 213s Preparing to unpack .../218-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 213s Unpacking r-cran-xfun (0.41+dfsg-1) ... 213s Selecting previously unselected package r-cran-highr. 213s Preparing to unpack .../219-r-cran-highr_0.10+dfsg-1_all.deb ... 213s Unpacking r-cran-highr (0.10+dfsg-1) ... 213s Selecting previously unselected package r-cran-yaml. 213s Preparing to unpack .../220-r-cran-yaml_2.3.8-1_arm64.deb ... 213s Unpacking r-cran-yaml (2.3.8-1) ... 213s Selecting previously unselected package libjs-mathjax. 213s Preparing to unpack .../221-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 213s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 214s Selecting previously unselected package r-cran-knitr. 214s Preparing to unpack .../222-r-cran-knitr_1.45+dfsg-1_all.deb ... 214s Unpacking r-cran-knitr (1.45+dfsg-1) ... 214s Selecting previously unselected package r-cran-jquerylib. 214s Preparing to unpack .../223-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 214s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 214s Selecting previously unselected package r-cran-fs. 214s Preparing to unpack .../224-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 214s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 214s Selecting previously unselected package r-cran-rappdirs. 214s Preparing to unpack .../225-r-cran-rappdirs_0.3.3-1_arm64.deb ... 214s Unpacking r-cran-rappdirs (0.3.3-1) ... 214s Selecting previously unselected package r-cran-sass. 214s Preparing to unpack .../226-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 214s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 214s Selecting previously unselected package r-cran-bslib. 214s Preparing to unpack .../227-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 214s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 214s Selecting previously unselected package r-cran-fontawesome. 214s Preparing to unpack .../228-r-cran-fontawesome_0.5.2-1_all.deb ... 214s Unpacking r-cran-fontawesome (0.5.2-1) ... 214s Selecting previously unselected package r-cran-tinytex. 214s Preparing to unpack .../229-r-cran-tinytex_0.49-1_all.deb ... 214s Unpacking r-cran-tinytex (0.49-1) ... 215s Selecting previously unselected package libjs-modernizr. 215s Preparing to unpack .../230-libjs-modernizr_2.6.2+ds1-5_all.deb ... 215s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 215s Selecting previously unselected package r-cran-pkgkitten. 215s Preparing to unpack .../231-r-cran-pkgkitten_0.2.3-1_all.deb ... 215s Unpacking r-cran-pkgkitten (0.2.3-1) ... 215s Selecting previously unselected package r-cran-rcpp. 215s Preparing to unpack .../232-r-cran-rcpp_1.0.12-1_arm64.deb ... 215s Unpacking r-cran-rcpp (1.0.12-1) ... 215s Selecting previously unselected package r-cran-later. 215s Preparing to unpack .../233-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 215s Unpacking r-cran-later (1.3.2+dfsg-1) ... 215s Selecting previously unselected package r-cran-promises. 215s Preparing to unpack .../234-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 215s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 215s Selecting previously unselected package r-cran-httpuv. 215s Preparing to unpack .../235-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 215s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 215s Selecting previously unselected package r-cran-xtable. 215s Preparing to unpack .../236-r-cran-xtable_1%3a1.8-4-2_all.deb ... 215s Unpacking r-cran-xtable (1:1.8-4-2) ... 215s Selecting previously unselected package r-cran-sourcetools. 215s Preparing to unpack .../237-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 215s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 215s Selecting previously unselected package r-cran-commonmark. 215s Preparing to unpack .../238-r-cran-commonmark_1.9.1-1_arm64.deb ... 215s Unpacking r-cran-commonmark (1.9.1-1) ... 215s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 215s Preparing to unpack .../239-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 215s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 215s Selecting previously unselected package r-cran-shiny. 215s Preparing to unpack .../240-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 215s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 215s Selecting previously unselected package r-cran-rmarkdown. 215s Preparing to unpack .../241-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 215s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 215s Selecting previously unselected package r-cran-bookdown. 216s Preparing to unpack .../242-r-cran-bookdown_0.37+dfsg-1_all.deb ... 216s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 216s Selecting previously unselected package r-cran-biocmanager. 216s Preparing to unpack .../243-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 216s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 216s Selecting previously unselected package tex-common. 216s Preparing to unpack .../244-tex-common_6.18_all.deb ... 216s Unpacking tex-common (6.18) ... 216s Selecting previously unselected package t1utils. 216s Preparing to unpack .../245-t1utils_1.41-4build2_arm64.deb ... 216s Unpacking t1utils (1.41-4build2) ... 216s Selecting previously unselected package texlive-binaries. 216s Preparing to unpack .../246-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 216s Unpacking texlive-binaries (2023.20230311.66589-9) ... 216s Selecting previously unselected package texlive-base. 216s Preparing to unpack .../247-texlive-base_2023.20240207-1_all.deb ... 216s Unpacking texlive-base (2023.20240207-1) ... 217s Selecting previously unselected package texlive-latex-base. 217s Preparing to unpack .../248-texlive-latex-base_2023.20240207-1_all.deb ... 217s Unpacking texlive-latex-base (2023.20240207-1) ... 217s Selecting previously unselected package texlive-bibtex-extra. 217s Preparing to unpack .../249-texlive-bibtex-extra_2023.20240207-1_all.deb ... 217s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 220s Selecting previously unselected package r-bioc-biocstyle. 220s Preparing to unpack .../250-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 220s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 220s Selecting previously unselected package r-cran-xml. 220s Preparing to unpack .../251-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 220s Unpacking r-cran-xml (3.99-0.16.1-1) ... 220s Selecting previously unselected package r-cran-hms. 220s Preparing to unpack .../252-r-cran-hms_1.1.3-1_all.deb ... 220s Unpacking r-cran-hms (1.1.3-1) ... 220s Selecting previously unselected package r-cran-prettyunits. 220s Preparing to unpack .../253-r-cran-prettyunits_1.2.0-1_all.deb ... 220s Unpacking r-cran-prettyunits (1.2.0-1) ... 220s Selecting previously unselected package r-cran-progress. 220s Preparing to unpack .../254-r-cran-progress_1.2.3-1_all.deb ... 220s Unpacking r-cran-progress (1.2.3-1) ... 220s Selecting previously unselected package r-cran-xml2. 220s Preparing to unpack .../255-r-cran-xml2_1.3.6-1_arm64.deb ... 220s Unpacking r-cran-xml2 (1.3.6-1) ... 220s Selecting previously unselected package r-bioc-biomart. 220s Preparing to unpack .../256-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 220s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 220s Selecting previously unselected package r-bioc-genomicranges. 220s Preparing to unpack .../257-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 220s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 220s Selecting previously unselected package r-bioc-rhtslib. 220s Preparing to unpack .../258-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 220s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 220s Selecting previously unselected package r-bioc-rsamtools. 220s Preparing to unpack .../259-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 220s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 221s Selecting previously unselected package r-cran-matrixstats. 221s Preparing to unpack .../260-r-cran-matrixstats_1.2.0-1_arm64.deb ... 221s Unpacking r-cran-matrixstats (1.2.0-1) ... 221s Selecting previously unselected package r-bioc-matrixgenerics. 221s Preparing to unpack .../261-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 221s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 221s Selecting previously unselected package r-cran-lattice. 221s Preparing to unpack .../262-r-cran-lattice_0.22-5-1_arm64.deb ... 221s Unpacking r-cran-lattice (0.22-5-1) ... 221s Selecting previously unselected package r-cran-matrix. 221s Preparing to unpack .../263-r-cran-matrix_1.6-5-1_arm64.deb ... 221s Unpacking r-cran-matrix (1.6-5-1) ... 221s Selecting previously unselected package r-cran-abind. 221s Preparing to unpack .../264-r-cran-abind_1.4-5-2_all.deb ... 221s Unpacking r-cran-abind (1.4-5-2) ... 221s Selecting previously unselected package r-bioc-s4arrays. 221s Preparing to unpack .../265-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 221s Selecting previously unselected package r-bioc-sparsearray. 221s Preparing to unpack .../266-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 221s Selecting previously unselected package r-bioc-delayedarray. 221s Preparing to unpack .../267-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 221s Selecting previously unselected package r-bioc-summarizedexperiment. 221s Preparing to unpack .../268-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 221s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 221s Selecting previously unselected package r-bioc-genomicalignments. 221s Preparing to unpack .../269-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 221s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 221s Selecting previously unselected package r-cran-rjson. 221s Preparing to unpack .../270-r-cran-rjson_0.2.21-1_arm64.deb ... 221s Unpacking r-cran-rjson (0.2.21-1) ... 221s Selecting previously unselected package r-cran-restfulr. 221s Preparing to unpack .../271-r-cran-restfulr_0.0.15-1_arm64.deb ... 221s Unpacking r-cran-restfulr (0.0.15-1) ... 221s Selecting previously unselected package r-bioc-rtracklayer. 221s Preparing to unpack .../272-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 221s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 221s Selecting previously unselected package r-bioc-bsgenome. 221s Preparing to unpack .../273-r-bioc-bsgenome_1.70.2-1_all.deb ... 221s Unpacking r-bioc-bsgenome (1.70.2-1) ... 221s Selecting previously unselected package r-cran-locfit. 221s Preparing to unpack .../274-r-cran-locfit_1.5-9.8-1_arm64.deb ... 221s Unpacking r-cran-locfit (1.5-9.8-1) ... 221s Selecting previously unselected package r-cran-gtable. 221s Preparing to unpack .../275-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 221s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 221s Selecting previously unselected package r-cran-isoband. 221s Preparing to unpack .../276-r-cran-isoband_0.2.7-1_arm64.deb ... 221s Unpacking r-cran-isoband (0.2.7-1) ... 222s Selecting previously unselected package r-cran-mass. 222s Preparing to unpack .../277-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 222s Unpacking r-cran-mass (7.3-60.0.1-1) ... 222s Selecting previously unselected package r-cran-nlme. 222s Preparing to unpack .../278-r-cran-nlme_3.1.164-1_arm64.deb ... 222s Unpacking r-cran-nlme (3.1.164-1) ... 222s Selecting previously unselected package r-cran-mgcv. 222s Preparing to unpack .../279-r-cran-mgcv_1.9-1-1_arm64.deb ... 222s Unpacking r-cran-mgcv (1.9-1-1) ... 222s Selecting previously unselected package r-cran-farver. 222s Preparing to unpack .../280-r-cran-farver_2.1.1-1_arm64.deb ... 222s Unpacking r-cran-farver (2.1.1-1) ... 222s Selecting previously unselected package r-cran-labeling. 222s Preparing to unpack .../281-r-cran-labeling_0.4.3-1_all.deb ... 222s Unpacking r-cran-labeling (0.4.3-1) ... 222s Selecting previously unselected package 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warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 230s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 230s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 230s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 230s Setting up r-cran-bitops (1.0-7-1) ... 230s Setting up r-cran-bit64 (4.0.5-1) ... 230s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 230s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 230s Setting up r-cran-deldir (2.0-4-1) ... 230s Setting up r-cran-askpass (1.2.0-1) ... 230s Setting up r-cran-fastmap (1.1.1-1) ... 230s Setting up r-cran-png (0.1-8-1) ... 230s Setting up r-bioc-biobase (2.62.0-1) ... 230s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 230s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 230s Setting up r-cran-utf8 (1.2.4-1) ... 230s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 230s Setting up r-cran-stringi (1.8.3-1) ... 230s Setting up texlive-latex-base (2023.20240207-1) ... 230s Setting up r-cran-hwriter (1.3.2.1-1) ... 230s Setting up r-cran-cpp11 (0.4.7-1) ... 230s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 230s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 230s Setting up r-cran-isoband (0.2.7-1) ... 230s Setting up r-cran-runit (0.4.32-3) ... 230s Setting up r-cran-futile.logger (1.4.3-4build1) ... 230s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 230s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 230s Setting up r-cran-later (1.3.2+dfsg-1) ... 230s Setting up r-cran-matrix (1.6-5-1) ... 230s Setting up r-cran-tinytex (0.49-1) ... 230s Setting up r-cran-knitr (1.45+dfsg-1) ... 230s Setting up r-cran-mgcv (1.9-1-1) ... 230s Setting up g++ (4:13.2.0-7ubuntu1) ... 230s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 230s Setting up r-cran-cachem (1.0.8-1) ... 230s Setting up build-essential (12.10ubuntu1) ... 230s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 230s Setting up r-bioc-iranges (2.36.0-1) ... 230s Setting up r-cran-rjson (0.2.21-1) ... 231s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 231s Setting up r-cran-restfulr (0.0.15-1) ... 231s Setting up r-cran-vctrs (0.6.5-1) ... 231s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 231s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 231s Setting up r-cran-ellipsis (0.3.2-2) ... 231s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 231s Setting up r-base-dev (4.3.2-1build1) ... 231s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 231s Setting up r-cran-stringr (1.5.1-1) ... 231s Setting up r-bioc-biocparallel (1.36.0-1) ... 231s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 231s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 231s Setting up r-cran-xml2 (1.3.6-1) ... 231s Setting up r-cran-munsell (0.5.0-2build1) ... 231s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 231s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 231s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 231s Setting up texlive-bibtex-extra (2023.20240207-1) ... 231s Setting up r-cran-interp (1.1-6-1) ... 231s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 231s Setting up r-cran-httr (1.4.7+dfsg-1) ... 231s Setting up r-cran-hms (1.1.3-1) ... 231s Setting up r-cran-scales (1.3.0-1) ... 231s Setting up r-cran-memoise (2.0.1-1) ... 231s Setting up r-cran-promises (1.2.1+dfsg-1) ... 231s Setting up r-cran-purrr (1.0.2-1) ... 231s Setting up r-cran-blob (1.2.4-1) ... 231s Setting up r-cran-htmltools (0.5.7-1) ... 231s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 231s Setting up r-bioc-xvector (0.42.0-1) ... 231s Setting up r-cran-sass (0.4.8+dfsg-1) ... 231s Setting up r-cran-dplyr (1.1.4-1) ... 231s Setting up r-cran-rsqlite (2.3.4-1) ... 231s Setting up r-cran-progress (1.2.3-1) ... 231s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 231s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 231s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 231s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 231s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 231s Setting up r-cran-fontawesome (0.5.2-1) ... 231s Setting up r-cran-latticeextra (0.6-30-1) ... 231s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 231s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 231s Setting up r-cran-tidyr (1.3.1-1) ... 231s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 231s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 231s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 231s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 231s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 231s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 231s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 231s Setting up r-bioc-annotationdbi (1.64.1-1) ... 231s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 231s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 231s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 231s Setting up r-bioc-genomicalignments (1.38.2-1) ... 231s Setting up r-cran-bookdown (0.37+dfsg-1) ... 231s Setting up r-bioc-rtracklayer (1.62.0-1) ... 231s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 231s Setting up r-bioc-shortread (1.60.0-2) ... 231s Setting up r-bioc-bsgenome (1.70.2-1) ... 231s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 231s Setting up autopkgtest-satdep (0) ... 231s Processing triggers for man-db (2.12.0-3) ... 232s Processing triggers for install-info (7.1-3) ... 232s Processing triggers for libc-bin (2.39-0ubuntu2) ... 232s Processing triggers for tex-common (6.18) ... 233s Running updmap-sys. This may take some time... done. 233s Running mktexlsr /var/lib/texmf ... done. 233s Building format(s) --all. 275s This may take some time... done. 288s (Reading database ... 126874 files and directories currently installed.) 288s Removing autopkgtest-satdep (0) ... 289s autopkgtest [13:46:19]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 289s autopkgtest [13:46:19]: test pkg-r-autopkgtest: [----------------------- 289s Test: Try to load the R library GenomicAlignments 290s 290s R version 4.3.2 (2023-10-31) -- "Eye Holes" 290s Copyright (C) 2023 The R Foundation for Statistical Computing 290s Platform: aarch64-unknown-linux-gnu (64-bit) 290s 290s R is free software and comes with ABSOLUTELY NO WARRANTY. 290s You are welcome to redistribute it under certain conditions. 290s Type 'license()' or 'licence()' for distribution details. 290s 290s R is a collaborative project with many contributors. 290s Type 'contributors()' for more information and 290s 'citation()' on how to cite R or R packages in publications. 290s 290s Type 'demo()' for some demos, 'help()' for on-line help, or 290s 'help.start()' for an HTML browser interface to help. 290s Type 'q()' to quit R. 290s 290s > library('GenomicAlignments') 290s Loading required package: BiocGenerics 290s 290s Attaching package: ‘BiocGenerics’ 290s 290s The following objects are masked from ‘package:stats’: 290s 290s IQR, mad, sd, var, xtabs 290s 290s The following objects are masked from ‘package:base’: 290s 290s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 290s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 290s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 290s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 290s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 290s table, tapply, union, unique, unsplit, which.max, which.min 290s 290s Loading required package: S4Vectors 290s Loading required package: stats4 291s 291s Attaching package: ‘S4Vectors’ 291s 291s The following object is masked from ‘package:utils’: 291s 291s findMatches 291s 291s The following objects are masked from ‘package:base’: 291s 291s expand.grid, I, unname 291s 291s Loading required package: IRanges 292s Loading required package: GenomeInfoDb 292s Loading required package: GenomicRanges 293s Loading required package: SummarizedExperiment 293s Loading required package: MatrixGenerics 293s Loading required package: matrixStats 293s 293s Attaching package: ‘MatrixGenerics’ 293s 293s The following objects are masked from ‘package:matrixStats’: 293s 293s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 293s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 293s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 293s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 293s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 293s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 293s colWeightedMeans, colWeightedMedians, colWeightedSds, 293s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 293s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 293s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 293s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 293s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 293s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 293s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 293s rowWeightedSds, rowWeightedVars 293s 293s Loading required package: Biobase 293s Welcome to Bioconductor 293s 293s Vignettes contain introductory material; view with 293s 'browseVignettes()'. To cite Bioconductor, see 293s 'citation("Biobase")', and for packages 'citation("pkgname")'. 293s 293s 293s Attaching package: ‘Biobase’ 293s 293s The following object is masked from ‘package:MatrixGenerics’: 293s 293s rowMedians 293s 293s The following objects are masked from ‘package:matrixStats’: 293s 293s anyMissing, rowMedians 293s 296s Loading required package: Biostrings 296s Loading required package: XVector 296s 296s Attaching package: ‘Biostrings’ 296s 296s The following object is masked from ‘package:base’: 296s 296s strsplit 296s 296s Loading required package: Rsamtools 297s > 297s > 298s Other tests are currently unsupported! 298s They will be progressively added. 298s autopkgtest [13:46:28]: test pkg-r-autopkgtest: -----------------------] 298s pkg-r-autopkgtest PASS 298s autopkgtest [13:46:28]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 299s autopkgtest [13:46:29]: @@@@@@@@@@@@@@@@@@@@ summary 299s pkg-r-autopkgtest PASS 317s Creating nova instance adt-noble-arm64-r-bioc-genomicalignments-20240316-134130-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...