0s autopkgtest [17:31:03]: starting date and time: 2024-03-16 17:31:03+0000 0s autopkgtest [17:31:03]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:31:03]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.m7f9_hpp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-genomeinfodb --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-21.secgroup --name adt-noble-arm64-r-bioc-genomeinfodb-20240316-173103-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 86s autopkgtest [17:32:29]: testbed dpkg architecture: arm64 86s autopkgtest [17:32:29]: testbed apt version: 2.7.12 86s autopkgtest [17:32:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 86s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 86s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 87s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 87s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 87s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 87s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 87s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 87s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 87s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 87s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 87s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 87s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 87s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 89s Fetched 9060 kB in 2s (5346 kB/s) 89s Reading package lists... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s Calculating upgrade... 93s The following packages will be REMOVED: 93s libglib2.0-0 libssl3 93s The following NEW packages will be installed: 93s libglib2.0-0t64 libssl3t64 xdg-user-dirs 93s The following packages have been kept back: 93s curl 93s The following packages will be upgraded: 93s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 93s ubuntu-minimal ubuntu-standard 94s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 94s Need to get 4613 kB of archives. 94s After this operation, 211 kB of additional disk space will be used. 94s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 94s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 94s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 94s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 94s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 94s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 94s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 94s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 94s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 94s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 95s Fetched 4613 kB in 1s (6878 kB/s) 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 95s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 95s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 96s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 96s udisks2 depends on libglib2.0-0 (>= 2.77.0). 96s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 96s python3-gi depends on libglib2.0-0 (>= 2.77.0). 96s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 96s netplan.io depends on libglib2.0-0 (>= 2.70.0). 96s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 96s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 96s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 96s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 96s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 96s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 96s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 96s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 96s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 96s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 96s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 96s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 96s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 96s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 96s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 96s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 96s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 96s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 96s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 96s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 96s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 96s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 96s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 96s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 96s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 96s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 96s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 96s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 96s fwupd depends on libglib2.0-0 (>= 2.79.0). 96s bolt depends on libglib2.0-0 (>= 2.56.0). 96s 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 96s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 96s Selecting previously unselected package libglib2.0-0t64:arm64. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 96s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 96s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 96s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 96s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 96s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 96s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 97s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 97s wget depends on libssl3 (>= 3.0.0). 97s u-boot-tools depends on libssl3 (>= 3.0.0). 97s tnftp depends on libssl3 (>= 3.0.0). 97s tcpdump depends on libssl3 (>= 3.0.0). 97s systemd-resolved depends on libssl3 (>= 3.0.0). 97s systemd depends on libssl3 (>= 3.0.0). 97s sudo depends on libssl3 (>= 3.0.0). 97s sbsigntool depends on libssl3 (>= 3.0.0). 97s rsync depends on libssl3 (>= 3.0.0). 97s python3-cryptography depends on libssl3 (>= 3.0.0). 97s openssh-server depends on libssl3 (>= 3.0.10). 97s openssh-client depends on libssl3 (>= 3.0.10). 97s mtd-utils depends on libssl3 (>= 3.0.0). 97s mokutil depends on libssl3 (>= 3.0.0). 97s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 97s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 97s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 97s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 97s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 97s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 97s libnvme1 depends on libssl3 (>= 3.0.0). 97s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 97s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 97s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 97s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 97s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 97s kmod depends on libssl3 (>= 3.0.0). 97s dhcpcd-base depends on libssl3 (>= 3.0.0). 97s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 97s 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 97s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 97s Selecting previously unselected package libssl3t64:arm64. 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 97s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 97s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 97s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 97s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 97s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 97s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 97s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 97s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 97s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 97s Unpacking ubuntu-minimal (1.536) over (1.535) ... 97s Selecting previously unselected package xdg-user-dirs. 97s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 97s Unpacking xdg-user-dirs (0.18-1) ... 97s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 97s Unpacking ubuntu-standard (1.536) over (1.535) ... 97s Setting up ubuntu-minimal (1.536) ... 97s Setting up xdg-user-dirs (0.18-1) ... 97s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 97s Setting up libtirpc-common (1.3.4+ds-1.1) ... 97s Setting up ubuntu-standard (1.536) ... 97s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 97s No schema files found: doing nothing. 97s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 97s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 97s Setting up openssl (3.0.13-0ubuntu1) ... 97s Setting up readline-common (8.2-3.1) ... 97s Processing triggers for man-db (2.12.0-3) ... 98s Processing triggers for install-info (7.1-3) ... 98s Processing triggers for libc-bin (2.39-0ubuntu2) ... 98s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 100s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 100s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 100s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 100s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 102s Reading package lists... 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 103s Calculating upgrade... 103s The following packages have been kept back: 103s curl 103s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 103s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 107s autopkgtest [17:32:50]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 107s autopkgtest [17:32:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomeinfodb 109s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomeinfodb 1.38.6+dfsg-1 (dsc) [2300 B] 109s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomeinfodb 1.38.6+dfsg-1 (tar) [3261 kB] 109s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomeinfodb 1.38.6+dfsg-1 (diff) [5552 B] 110s gpgv: Signature made Tue Feb 13 12:41:34 2024 UTC 110s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 110s gpgv: issuer "tille@debian.org" 110s gpgv: Can't check signature: No public key 110s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomeinfodb_1.38.6+dfsg-1.dsc: no acceptable signature found 110s autopkgtest [17:32:53]: testing package r-bioc-genomeinfodb version 1.38.6+dfsg-1 110s autopkgtest [17:32:53]: build not needed 112s autopkgtest [17:32:55]: test pkg-r-autopkgtest: preparing testbed 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 114s Starting pkgProblemResolver with broken count: 0 114s Starting 2 pkgProblemResolver with broken count: 0 114s Done 115s The following additional packages will be installed: 115s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 115s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 115s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 115s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 115s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 115s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 115s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 115s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 115s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 115s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 115s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 115s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 115s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 115s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 115s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 115s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 115s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 115s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 115s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 115s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 115s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 115s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 115s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 115s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 115s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 115s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 115s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 115s libzzip-0-13 linux-libc-dev node-bootstrap-sass node-html5shiv 115s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 115s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 115s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 115s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 115s r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata 115s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 115s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib 115s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 115s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 115s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 115s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 115s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 115s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 115s r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis 115s r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 115s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 115s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 115s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 115s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 115s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 115s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 115s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 115s r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 115s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 115s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 115s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 115s r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 115s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 115s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 115s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 115s x11-common xdg-utils zip zlib1g-dev 115s Suggested packages: 115s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 115s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 115s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 115s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 115s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 115s libboost-context1.83-dev libboost-contract1.83-dev 115s libboost-coroutine1.83-dev libboost-date-time1.83-dev 115s libboost-exception1.83-dev libboost-fiber1.83-dev 115s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 115s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 115s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 115s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 115s libboost-numpy1.83-dev libboost-program-options1.83-dev 115s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 115s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 115s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 115s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 115s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 115s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 115s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 115s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 115s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 115s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 115s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 115s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 115s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 115s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 115s r-cran-doparallel r-bioc-variantannotation r-bioc-shortread 115s r-cran-batchtools r-cran-mockery r-cran-webmockr r-bioc-hdf5array 115s r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-edger 115s r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz 115s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 115s r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-rstudioapi 115s r-cran-rmysql r-cran-lubridate r-cran-getopt r-cran-formattable 115s r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-scales 115s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 115s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 115s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 115s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 115s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 115s Recommended packages: 115s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 115s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 115s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 115s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 115s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 115s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 115s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 115s r-cran-webutils r-cran-xts r-cran-nanotime r-cran-zoo r-cran-rpostgresql 115s r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-survival 115s r-cran-pkgload r-cran-waldo r-cran-cairo r-cran-markdown r-cran-ragg 115s r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick 115s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 115s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 115s r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis r-cran-dygraphs 115s r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-mockr 115s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 115s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 115s x11-xserver-utils 115s The following packages will be REMOVED: 115s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 115s The following NEW packages will be installed: 115s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 115s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 115s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 115s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 115s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 115s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 115s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 115s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 115s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 115s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 115s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 115s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 115s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 115s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 115s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 115s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 115s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 115s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 115s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 115s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 115s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 115s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 115s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 115s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 115s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 115s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 115s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 115s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 115s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 115s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 115s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 115s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 115s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 115s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 115s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 115s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 115s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 115s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 115s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 115s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 115s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 115s r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr 115s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 115s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 115s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 115s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 115s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 115s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 115s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 115s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 115s r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 115s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 115s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 115s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 115s r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 115s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 115s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 115s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 115s x11-common xdg-utils zip zlib1g-dev 115s The following packages will be upgraded: 115s curl 115s 1 upgraded, 285 newly installed, 5 to remove and 0 not upgraded. 115s Need to get 427 MB/427 MB of archives. 115s After this operation, 1345 MB of additional disk space will be used. 115s Get:1 /tmp/autopkgtest.DXqv89/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [808 B] 115s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 115s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 115s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 115s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 115s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 115s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 115s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 115s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 116s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 116s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 116s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 116s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 116s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 116s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 116s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 116s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 116s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 116s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 116s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 116s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 116s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 116s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 116s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 116s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 116s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 116s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 116s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 116s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 116s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 116s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 117s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 117s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 117s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 117s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 117s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 117s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 117s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 117s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 117s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 117s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 117s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 117s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 117s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 117s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 117s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 117s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 117s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 117s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 117s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 117s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 117s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 117s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 117s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 117s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 117s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 117s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 117s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 117s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 117s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 117s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 117s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 117s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 118s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 118s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 118s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 118s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 118s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 118s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 118s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 118s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 118s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 118s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 118s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 118s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 118s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 118s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 118s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 118s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 118s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 118s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 118s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 118s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 118s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 118s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 118s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 118s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 118s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 118s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 118s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 118s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 118s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 118s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 118s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 118s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 118s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 118s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 118s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 118s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 118s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 118s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 119s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 119s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 119s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 119s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 119s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 119s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 119s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 119s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 119s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 119s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 119s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 119s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 119s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 119s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 120s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 120s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 120s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 120s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 120s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 120s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 120s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 120s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 120s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 120s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 120s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 120s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 120s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 120s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 120s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 120s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 120s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 120s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 120s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 120s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 120s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 120s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 120s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 120s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 120s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 120s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 120s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 120s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 120s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 121s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 121s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 121s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 121s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 121s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 121s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 121s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 123s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 123s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 123s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 123s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 123s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 123s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 123s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 123s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 123s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 123s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 123s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 123s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 123s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 123s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 123s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 124s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 124s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 124s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 124s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 124s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 124s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 124s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 124s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 124s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 124s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 124s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 124s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 124s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 124s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 124s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 124s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 124s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 124s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 124s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 124s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 124s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 124s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 125s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 125s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 125s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 127s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 127s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 127s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 127s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 127s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 127s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 127s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 127s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 127s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 127s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 127s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 128s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 128s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 128s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 128s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 128s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 128s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 128s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 128s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 128s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 128s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 129s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 129s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 129s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 129s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 129s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 129s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 129s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 129s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 129s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 129s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 129s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 129s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 129s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 129s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 129s Get:227 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 129s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 129s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 129s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 129s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 129s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 129s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 130s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 130s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 130s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 130s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 130s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 130s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 130s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 130s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 130s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 130s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 130s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 130s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 130s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 130s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 130s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 130s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 130s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 130s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 130s Get:252 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 130s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 130s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 131s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 131s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 134s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 134s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 134s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 134s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 134s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 134s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 134s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 134s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 134s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 134s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 134s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 134s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 134s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 134s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 134s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 134s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 135s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 135s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 135s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 135s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 135s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 135s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 135s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 135s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 135s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 135s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 136s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 136s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 136s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 136s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 138s Preconfiguring packages ... 138s Fetched 427 MB in 21s (20.4 MB/s) 138s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 138s wget depends on libpsl5 (>= 0.16.0). 138s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 138s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 138s 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 138s Removing libpsl5:arm64 (0.21.2-1build1) ... 138s Selecting previously unselected package libpsl5t64:arm64. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 138s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 138s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 138s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 138s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 138s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 138s Selecting previously unselected package libcurl4t64:arm64. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 138s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 138s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 138s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 138s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 138s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 138s 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 138s Removing libpng16-16:arm64 (1.6.43-1) ... 138s Selecting previously unselected package libpng16-16t64:arm64. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 138s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 138s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 138s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 138s parted depends on libreadline8 (>= 6.0). 138s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 138s gpgsm depends on libreadline8 (>= 6.0). 138s gpgconf depends on libreadline8 (>= 6.0). 138s gpg depends on libreadline8 (>= 6.0). 138s gawk depends on libreadline8 (>= 6.0). 138s fdisk depends on libreadline8 (>= 6.0). 138s 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 139s Removing libreadline8:arm64 (8.2-3) ... 139s Selecting previously unselected package libreadline8t64:arm64. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 139s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 139s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 139s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 139s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 139s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 139s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 139s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 139s lsof depends on libtirpc3 (>= 1.0.2). 139s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 139s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 139s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 139s iproute2 depends on libtirpc3 (>= 1.0.2). 139s 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 139s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 139s Selecting previously unselected package libtirpc3t64:arm64. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 139s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 139s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 139s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 139s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 139s Selecting previously unselected package libc-dev-bin. 139s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 139s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 139s Selecting previously unselected package linux-libc-dev:arm64. 139s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 139s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 139s Selecting previously unselected package libcrypt-dev:arm64. 139s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 139s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 139s Selecting previously unselected package libtirpc-dev:arm64. 139s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 139s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 139s Selecting previously unselected package libnsl-dev:arm64. 139s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 139s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 139s Selecting previously unselected package rpcsvc-proto. 139s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 139s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 139s Selecting previously unselected package libc6-dev:arm64. 139s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 139s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 139s Selecting previously unselected package libisl23:arm64. 139s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 139s Unpacking libisl23:arm64 (0.26-3) ... 139s Selecting previously unselected package libmpc3:arm64. 139s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 139s Unpacking libmpc3:arm64 (1.3.1-1) ... 139s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 139s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 139s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package cpp-13. 140s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package cpp-aarch64-linux-gnu. 140s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 140s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 140s Selecting previously unselected package cpp. 140s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 140s Unpacking cpp (4:13.2.0-7ubuntu1) ... 140s Selecting previously unselected package libcc1-0:arm64. 140s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libgomp1:arm64. 140s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libitm1:arm64. 140s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libatomic1:arm64. 140s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libasan8:arm64. 140s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package liblsan0:arm64. 140s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libtsan2:arm64. 140s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libubsan1:arm64. 140s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libhwasan0:arm64. 140s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libgcc-13-dev:arm64. 140s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 140s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package gcc-13. 141s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package gcc-aarch64-linux-gnu. 141s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package gcc. 141s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking gcc (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package libstdc++-13-dev:arm64. 141s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package g++-13-aarch64-linux-gnu. 141s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package g++-13. 141s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking g++-13 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package g++-aarch64-linux-gnu. 141s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package g++. 141s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking g++ (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package build-essential. 141s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 141s Unpacking build-essential (12.10ubuntu1) ... 141s Selecting previously unselected package dctrl-tools. 141s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 141s Unpacking dctrl-tools (2.24-3build2) ... 142s Selecting previously unselected package fonts-dejavu-mono. 142s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 142s Unpacking fonts-dejavu-mono (2.37-8) ... 142s Selecting previously unselected package fonts-dejavu-core. 142s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 142s Unpacking fonts-dejavu-core (2.37-8) ... 142s Selecting previously unselected package fontconfig-config. 142s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 142s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 142s Selecting previously unselected package libfontconfig1:arm64. 142s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 142s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 142s Selecting previously unselected package fontconfig. 142s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 142s Unpacking fontconfig (2.15.0-1ubuntu1) ... 142s Selecting previously unselected package fonts-font-awesome. 142s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 142s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 142s Selecting previously unselected package fonts-glyphicons-halflings. 142s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 142s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 142s Selecting previously unselected package fonts-lmodern. 142s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 142s Unpacking fonts-lmodern (2.005-1) ... 142s Selecting previously unselected package fonts-mathjax. 142s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 142s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 142s Selecting previously unselected package libgfortran5:arm64. 142s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 142s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 142s Selecting previously unselected package libgfortran-13-dev:arm64. 142s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 142s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 142s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 142s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 142s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package gfortran-13. 143s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 143s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package gfortran-aarch64-linux-gnu. 143s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 143s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 143s Selecting previously unselected package gfortran. 143s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 143s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 143s Selecting previously unselected package icu-devtools. 143s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 143s Unpacking icu-devtools (74.2-1ubuntu1) ... 143s Selecting previously unselected package javascript-common. 143s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 143s Unpacking javascript-common (11+nmu1) ... 143s Selecting previously unselected package libio-string-perl. 143s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 143s Unpacking libio-string-perl (1.08-4) ... 143s Selecting previously unselected package liblatex-tounicode-perl. 143s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 143s Unpacking liblatex-tounicode-perl (0.54-2) ... 143s Selecting previously unselected package libbibtex-parser-perl. 143s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 143s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 143s Selecting previously unselected package libblas3:arm64. 143s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 143s Unpacking libblas3:arm64 (3.12.0-3) ... 143s Selecting previously unselected package libblas-dev:arm64. 143s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 143s Unpacking libblas-dev:arm64 (3.12.0-3) ... 143s Selecting previously unselected package libboost1.83-dev:arm64. 143s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 143s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 145s Selecting previously unselected package libboost-dev:arm64. 145s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 145s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 145s Selecting previously unselected package libbz2-dev:arm64. 145s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 145s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 145s Selecting previously unselected package libpixman-1-0:arm64. 145s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 145s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 145s Selecting previously unselected package libxcb-render0:arm64. 145s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 145s Unpacking libxcb-render0:arm64 (1.15-1) ... 145s Selecting previously unselected package libxcb-shm0:arm64. 145s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 145s Unpacking libxcb-shm0:arm64 (1.15-1) ... 145s Selecting previously unselected package libxrender1:arm64. 145s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 145s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 145s Selecting previously unselected package libcairo2:arm64. 145s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 145s Unpacking libcairo2:arm64 (1.18.0-1) ... 145s Selecting previously unselected package libdatrie1:arm64. 145s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 145s Unpacking libdatrie1:arm64 (0.2.13-3) ... 145s Selecting previously unselected package libdeflate0:arm64. 145s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 145s Unpacking libdeflate0:arm64 (1.19-1) ... 145s Selecting previously unselected package libgraphite2-3:arm64. 146s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 146s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 146s Selecting previously unselected package libharfbuzz0b:arm64. 146s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 146s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 146s Selecting previously unselected package x11-common. 146s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 146s Unpacking x11-common (1:7.7+23ubuntu2) ... 146s Selecting previously unselected package libice6:arm64. 146s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 146s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 146s Selecting previously unselected package libicu-dev:arm64. 146s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 146s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 146s Selecting previously unselected package libjpeg-turbo8:arm64. 146s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 146s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 146s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 146s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 146s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 146s Selecting previously unselected package libjpeg8:arm64. 146s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 146s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 146s Selecting previously unselected package libjpeg8-dev:arm64. 146s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 146s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 146s Selecting previously unselected package libjpeg-dev:arm64. 146s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 146s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 146s Selecting previously unselected package libjs-bootstrap. 147s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 147s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 147s Selecting previously unselected package libjs-popper.js. 147s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 147s Unpacking libjs-popper.js (1.16.1+ds-6) ... 147s Selecting previously unselected package libjs-bootstrap4. 147s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 147s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 147s Selecting previously unselected package libjs-d3. 147s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 147s Unpacking libjs-d3 (3.5.17-4) ... 147s Selecting previously unselected package libjs-es5-shim. 147s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 147s Unpacking libjs-es5-shim (4.6.7-2) ... 147s Selecting previously unselected package libjs-highlight.js. 147s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 147s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 147s Selecting previously unselected package libjs-jquery. 147s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 147s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 147s Selecting previously unselected package libjs-jquery-datatables. 147s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 147s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 147s Selecting previously unselected package libjs-sifter.js. 147s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 147s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 147s Selecting previously unselected package libjs-microplugin.js. 147s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 147s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 147s Selecting previously unselected package libjs-jquery-selectize.js. 147s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 147s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 147s Selecting previously unselected package libjs-jquery-ui. 147s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 147s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 147s Selecting previously unselected package libjs-json. 147s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 147s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 147s Selecting previously unselected package libjs-lunr. 147s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 147s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 147s Selecting previously unselected package libjs-prettify. 147s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 147s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 147s Selecting previously unselected package libkpathsea6:arm64. 147s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 147s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 147s Selecting previously unselected package liblapack3:arm64. 147s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 147s Unpacking liblapack3:arm64 (3.12.0-3) ... 148s Selecting previously unselected package liblapack-dev:arm64. 148s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 148s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 148s Selecting previously unselected package liblerc4:arm64. 148s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 148s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 148s Selecting previously unselected package liblua5.4-0:arm64. 148s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 148s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 148s Selecting previously unselected package libncurses-dev:arm64. 148s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 148s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 148s Selecting previously unselected package libthai-data. 148s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 148s Unpacking libthai-data (0.1.29-2) ... 148s Selecting previously unselected package libthai0:arm64. 148s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 148s Unpacking libthai0:arm64 (0.1.29-2) ... 148s Selecting previously unselected package libpango-1.0-0:arm64. 148s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 148s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 148s Selecting previously unselected package libpangoft2-1.0-0:arm64. 148s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 148s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 148s Selecting previously unselected package libpangocairo-1.0-0:arm64. 148s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 148s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 148s Selecting previously unselected package libpaper1:arm64. 148s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 148s Unpacking libpaper1:arm64 (1.1.29) ... 148s Selecting previously unselected package libpaper-utils. 149s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 149s Unpacking libpaper-utils (1.1.29) ... 149s Selecting previously unselected package libpcre2-16-0:arm64. 149s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 149s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 149s Selecting previously unselected package libpcre2-32-0:arm64. 149s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 149s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 149s Selecting previously unselected package libpcre2-posix3:arm64. 149s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 149s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 149s Selecting previously unselected package libpcre2-dev:arm64. 149s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 149s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 149s Selecting previously unselected package libpkgconf3:arm64. 149s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 149s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 149s Selecting previously unselected package zlib1g-dev:arm64. 149s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 149s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 149s Selecting previously unselected package libpng-dev:arm64. 149s Preparing to unpack .../111-libpng-dev_1.6.43-3_arm64.deb ... 149s Unpacking libpng-dev:arm64 (1.6.43-3) ... 149s Selecting previously unselected package libpotrace0:arm64. 149s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 149s Unpacking libpotrace0:arm64 (1.16-2) ... 149s Selecting previously unselected package libptexenc1:arm64. 149s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 149s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 149s Selecting previously unselected package libreadline-dev:arm64. 149s Preparing to unpack .../114-libreadline-dev_8.2-3.1_arm64.deb ... 149s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 150s Selecting previously unselected package libsharpyuv0:arm64. 150s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 150s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 150s Selecting previously unselected package libsm6:arm64. 150s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 150s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 150s Selecting previously unselected package libsynctex2:arm64. 150s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 150s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 150s Selecting previously unselected package libtcl8.6:arm64. 150s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 150s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 150s Selecting previously unselected package libteckit0:arm64. 150s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 150s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 150s Selecting previously unselected package libtexlua53-5:arm64. 150s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 150s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 150s Selecting previously unselected package libjbig0:arm64. 150s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 150s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 150s Selecting previously unselected package libwebp7:arm64. 150s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 150s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 150s Selecting previously unselected package libtiff6:arm64. 150s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 150s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 150s Selecting previously unselected package libxft2:arm64. 150s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 150s Unpacking libxft2:arm64 (2.3.6-1) ... 151s Selecting previously unselected package libxss1:arm64. 151s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 151s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 151s Selecting previously unselected package libtk8.6:arm64. 151s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 151s Unpacking libtk8.6:arm64 (8.6.13-2) ... 151s Selecting previously unselected package libxt6t64:arm64. 151s Preparing to unpack .../127-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 151s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 151s Selecting previously unselected package libxmu6:arm64. 151s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 151s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 151s Selecting previously unselected package libxpm4:arm64. 151s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 151s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 151s Selecting previously unselected package libxaw7:arm64. 151s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 151s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 151s Selecting previously unselected package libxi6:arm64. 151s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 151s Unpacking libxi6:arm64 (2:1.8.1-1) ... 151s Selecting previously unselected package libzzip-0-13:arm64. 151s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 151s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 151s Selecting previously unselected package node-bootstrap-sass. 151s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 151s Unpacking node-bootstrap-sass (3.4.3-2) ... 151s Selecting previously unselected package node-html5shiv. 151s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 151s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 151s Selecting previously unselected package node-normalize.css. 152s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 152s Unpacking node-normalize.css (8.0.1-5) ... 152s Selecting previously unselected package pandoc-data. 152s Preparing to unpack .../136-pandoc-data_3.1.3-1_all.deb ... 152s Unpacking pandoc-data (3.1.3-1) ... 152s Selecting previously unselected package pandoc. 152s Preparing to unpack .../137-pandoc_3.1.3+ds-2_arm64.deb ... 152s Unpacking pandoc (3.1.3+ds-2) ... 153s Selecting previously unselected package pkgconf-bin. 153s Preparing to unpack .../138-pkgconf-bin_1.8.1-2_arm64.deb ... 153s Unpacking pkgconf-bin (1.8.1-2) ... 153s Selecting previously unselected package pkgconf:arm64. 153s Preparing to unpack .../139-pkgconf_1.8.1-2_arm64.deb ... 154s Unpacking pkgconf:arm64 (1.8.1-2) ... 154s Selecting previously unselected package pkg-config:arm64. 154s Preparing to unpack .../140-pkg-config_1.8.1-2_arm64.deb ... 154s Unpacking pkg-config:arm64 (1.8.1-2) ... 154s Selecting previously unselected package zip. 154s Preparing to unpack .../141-zip_3.0-13_arm64.deb ... 154s Unpacking zip (3.0-13) ... 154s Selecting previously unselected package unzip. 154s Preparing to unpack .../142-unzip_6.0-28ubuntu3_arm64.deb ... 154s Unpacking unzip (6.0-28ubuntu3) ... 154s Selecting previously unselected package xdg-utils. 154s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 154s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 154s Selecting previously unselected package r-base-core. 154s Preparing to unpack .../144-r-base-core_4.3.3-2build1_arm64.deb ... 154s Unpacking r-base-core (4.3.3-2build1) ... 154s Selecting previously unselected package liblzma-dev:arm64. 154s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ... 154s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 154s Selecting previously unselected package r-base-dev. 154s Preparing to unpack .../146-r-base-dev_4.3.3-2build1_all.deb ... 154s Unpacking r-base-dev (4.3.3-2build1) ... 154s Selecting previously unselected package pkg-r-autopkgtest. 154s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 154s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 154s Selecting previously unselected package r-bioc-biocgenerics. 154s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 154s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 154s Selecting previously unselected package r-bioc-biobase. 154s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_arm64.deb ... 154s Unpacking r-bioc-biobase (2.62.0-1) ... 154s Selecting previously unselected package r-bioc-s4vectors. 154s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 154s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 154s Selecting previously unselected package r-bioc-iranges. 155s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_arm64.deb ... 155s Unpacking r-bioc-iranges (2.36.0-1) ... 155s Selecting previously unselected package r-cran-dbi. 155s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 155s Unpacking r-cran-dbi (1.2.2-1) ... 155s Selecting previously unselected package r-cran-bit. 155s Preparing to unpack .../153-r-cran-bit_4.0.5-1_arm64.deb ... 155s Unpacking r-cran-bit (4.0.5-1) ... 155s Selecting previously unselected package r-cran-bit64. 155s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_arm64.deb ... 155s Unpacking r-cran-bit64 (4.0.5-1) ... 155s Selecting previously unselected package r-cran-rlang. 155s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_arm64.deb ... 155s Unpacking r-cran-rlang (1.1.3-1) ... 155s Selecting previously unselected package r-cran-cli. 155s Preparing to unpack .../156-r-cran-cli_3.6.2-1_arm64.deb ... 155s Unpacking r-cran-cli (3.6.2-1) ... 155s Selecting previously unselected package r-cran-glue. 155s Preparing to unpack .../157-r-cran-glue_1.7.0-1_arm64.deb ... 155s Unpacking r-cran-glue (1.7.0-1) ... 155s Selecting previously unselected package r-cran-lifecycle. 155s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 155s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 155s Selecting previously unselected package r-cran-vctrs. 155s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_arm64.deb ... 155s Unpacking r-cran-vctrs (0.6.5-1) ... 156s Selecting previously unselected package r-cran-blob. 156s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 156s Unpacking r-cran-blob (1.2.4-1) ... 156s Selecting previously unselected package r-cran-fastmap. 156s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_arm64.deb ... 156s Unpacking r-cran-fastmap (1.1.1-1) ... 156s Selecting previously unselected package r-cran-cachem. 156s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_arm64.deb ... 156s Unpacking r-cran-cachem (1.0.8-1) ... 156s Selecting previously unselected package r-cran-memoise. 156s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 156s Unpacking r-cran-memoise (2.0.1-1) ... 156s Selecting previously unselected package r-cran-pkgconfig. 156s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 156s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 156s Selecting previously unselected package r-cran-plogr. 156s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 156s Unpacking r-cran-plogr (0.2.0-3build1) ... 156s Selecting previously unselected package r-cran-cpp11. 156s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 156s Unpacking r-cran-cpp11 (0.4.7-1) ... 156s Selecting previously unselected package r-cran-rsqlite. 156s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_arm64.deb ... 156s Unpacking r-cran-rsqlite (2.3.4-1) ... 156s Selecting previously unselected package r-cran-curl. 156s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 156s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 156s Selecting previously unselected package r-cran-jsonlite. 156s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 156s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 156s Selecting previously unselected package r-cran-mime. 156s Preparing to unpack .../170-r-cran-mime_0.12-1_arm64.deb ... 156s Unpacking r-cran-mime (0.12-1) ... 156s Selecting previously unselected package r-cran-sys. 156s Preparing to unpack .../171-r-cran-sys_3.4.2-1_arm64.deb ... 156s Unpacking r-cran-sys (3.4.2-1) ... 156s Selecting previously unselected package r-cran-askpass. 156s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_arm64.deb ... 156s Unpacking r-cran-askpass (1.2.0-1) ... 156s Selecting previously unselected package r-cran-openssl. 156s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 156s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 156s Selecting previously unselected package r-cran-r6. 156s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 156s Unpacking r-cran-r6 (2.5.1-1) ... 156s Selecting previously unselected package r-cran-httr. 156s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 156s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 157s Selecting previously unselected package r-cran-png. 157s Preparing to unpack .../176-r-cran-png_0.1-8-1_arm64.deb ... 157s Unpacking r-cran-png (0.1-8-1) ... 157s Selecting previously unselected package r-bioc-zlibbioc. 157s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 157s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 157s Selecting previously unselected package r-bioc-xvector. 157s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_arm64.deb ... 157s Unpacking r-bioc-xvector (0.42.0-1) ... 157s Selecting previously unselected package r-cran-bitops. 157s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_arm64.deb ... 157s Unpacking r-cran-bitops (1.0-7-1) ... 157s Selecting previously unselected package r-cran-rcurl. 157s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 157s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 157s Selecting previously unselected package r-bioc-genomeinfodbdata. 157s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 157s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 157s Selecting previously unselected package r-bioc-genomeinfodb. 157s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 157s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 157s Selecting previously unselected package r-cran-crayon. 157s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 157s Unpacking r-cran-crayon (1.5.2-1) ... 157s Selecting previously unselected package r-bioc-biostrings. 157s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 157s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 157s Selecting previously unselected package r-bioc-keggrest. 157s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 157s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 158s Selecting previously unselected package r-bioc-annotationdbi. 158s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 158s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 158s Selecting previously unselected package r-cran-generics. 158s Preparing to unpack .../187-r-cran-generics_0.1.3-1_all.deb ... 158s Unpacking r-cran-generics (0.1.3-1) ... 158s Selecting previously unselected package r-cran-magrittr. 159s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_arm64.deb ... 159s Unpacking r-cran-magrittr (2.0.3-1) ... 159s Selecting previously unselected package r-cran-fansi. 159s Preparing to unpack .../189-r-cran-fansi_1.0.5-1_arm64.deb ... 159s Unpacking r-cran-fansi (1.0.5-1) ... 159s Selecting previously unselected package r-cran-utf8. 159s Preparing to unpack .../190-r-cran-utf8_1.2.4-1_arm64.deb ... 159s Unpacking r-cran-utf8 (1.2.4-1) ... 159s Selecting previously unselected package r-cran-pillar. 160s Preparing to unpack .../191-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 160s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 160s Selecting previously unselected package r-cran-tibble. 160s Preparing to unpack .../192-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 160s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 160s Selecting previously unselected package r-cran-withr. 160s Preparing to unpack .../193-r-cran-withr_2.5.0-1_all.deb ... 160s Unpacking r-cran-withr (2.5.0-1) ... 160s Selecting previously unselected package r-cran-tidyselect. 160s Preparing to unpack .../194-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 160s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 160s Selecting previously unselected package r-cran-dplyr. 160s Preparing to unpack .../195-r-cran-dplyr_1.1.4-1_arm64.deb ... 160s Unpacking r-cran-dplyr (1.1.4-1) ... 160s Selecting previously unselected package r-cran-purrr. 160s Preparing to unpack .../196-r-cran-purrr_1.0.2-1_arm64.deb ... 160s Unpacking r-cran-purrr (1.0.2-1) ... 161s Selecting previously unselected package r-cran-stringi. 161s Preparing to unpack .../197-r-cran-stringi_1.8.3-1_arm64.deb ... 161s Unpacking r-cran-stringi (1.8.3-1) ... 161s Selecting previously unselected package r-cran-stringr. 161s Preparing to unpack .../198-r-cran-stringr_1.5.1-1_all.deb ... 161s Unpacking r-cran-stringr (1.5.1-1) ... 161s Selecting previously unselected package r-cran-tidyr. 161s Preparing to unpack .../199-r-cran-tidyr_1.3.1-1_arm64.deb ... 161s Unpacking r-cran-tidyr (1.3.1-1) ... 161s Selecting previously unselected package r-cran-dbplyr. 161s Preparing to unpack .../200-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 161s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 161s Selecting previously unselected package r-cran-filelock. 161s Preparing to unpack .../201-r-cran-filelock_1.0.3-1_arm64.deb ... 161s Unpacking r-cran-filelock (1.0.3-1) ... 161s Selecting previously unselected package r-bioc-biocfilecache. 161s Preparing to unpack .../202-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 161s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 161s Selecting previously unselected package r-bioc-biocio. 161s Preparing to unpack .../203-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 161s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 161s Selecting previously unselected package r-cran-formatr. 161s Preparing to unpack .../204-r-cran-formatr_1.14-1_all.deb ... 161s Unpacking r-cran-formatr (1.14-1) ... 161s Selecting previously unselected package r-cran-lambda.r. 161s Preparing to unpack .../205-r-cran-lambda.r_1.2.4-2build1_all.deb ... 161s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 161s Selecting previously unselected package r-cran-futile.options. 161s Preparing to unpack .../206-r-cran-futile.options_1.0.1-3build1_all.deb ... 161s Unpacking r-cran-futile.options (1.0.1-3build1) ... 161s Selecting previously unselected package r-cran-futile.logger. 162s Preparing to unpack .../207-r-cran-futile.logger_1.4.3-4build1_all.deb ... 162s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 162s Selecting previously unselected package r-cran-snow. 162s Preparing to unpack .../208-r-cran-snow_1%3a0.4.4-2_all.deb ... 162s Unpacking r-cran-snow (1:0.4.4-2) ... 162s Selecting previously unselected package r-cran-codetools. 162s Preparing to unpack .../209-r-cran-codetools_0.2-19-1_all.deb ... 162s Unpacking r-cran-codetools (0.2-19-1) ... 162s Selecting previously unselected package r-cran-bh. 162s Preparing to unpack .../210-r-cran-bh_1.84.0-1_all.deb ... 162s Unpacking r-cran-bh (1.84.0-1) ... 162s Selecting previously unselected package r-bioc-biocparallel. 162s Preparing to unpack .../211-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 162s Unpacking r-bioc-biocparallel (1.36.0-1) ... 162s Selecting previously unselected package r-cran-base64enc. 162s Preparing to unpack .../212-r-cran-base64enc_0.1-3-3_arm64.deb ... 162s Unpacking r-cran-base64enc (0.1-3-3) ... 162s Selecting previously unselected package r-cran-digest. 162s Preparing to unpack .../213-r-cran-digest_0.6.34-1_arm64.deb ... 162s Unpacking r-cran-digest (0.6.34-1) ... 162s Selecting previously unselected package r-cran-ellipsis. 162s Preparing to unpack .../214-r-cran-ellipsis_0.3.2-2_arm64.deb ... 162s Unpacking r-cran-ellipsis (0.3.2-2) ... 162s Selecting previously unselected package r-cran-htmltools. 162s Preparing to unpack .../215-r-cran-htmltools_0.5.7-1_arm64.deb ... 162s Unpacking r-cran-htmltools (0.5.7-1) ... 162s Selecting previously unselected package r-cran-evaluate. 162s Preparing to unpack .../216-r-cran-evaluate_0.23-1_all.deb ... 162s Unpacking r-cran-evaluate (0.23-1) ... 162s Selecting previously unselected package r-cran-xfun. 162s Preparing to unpack .../217-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 162s Unpacking r-cran-xfun (0.41+dfsg-1) ... 162s Selecting previously unselected package r-cran-highr. 162s Preparing to unpack .../218-r-cran-highr_0.10+dfsg-1_all.deb ... 162s Unpacking r-cran-highr (0.10+dfsg-1) ... 162s Selecting previously unselected package r-cran-yaml. 162s Preparing to unpack .../219-r-cran-yaml_2.3.8-1_arm64.deb ... 162s Unpacking r-cran-yaml (2.3.8-1) ... 162s Selecting previously unselected package libjs-mathjax. 162s Preparing to unpack .../220-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 162s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 163s Selecting previously unselected package r-cran-knitr. 163s Preparing to unpack .../221-r-cran-knitr_1.45+dfsg-1_all.deb ... 163s Unpacking r-cran-knitr (1.45+dfsg-1) ... 163s Selecting previously unselected package r-cran-jquerylib. 163s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 163s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 163s Selecting previously unselected package r-cran-fs. 166s Preparing to unpack .../223-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 166s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 166s Selecting previously unselected package r-cran-rappdirs. 170s Preparing to unpack .../224-r-cran-rappdirs_0.3.3-1_arm64.deb ... 170s Unpacking r-cran-rappdirs (0.3.3-1) ... 170s Selecting previously unselected package r-cran-sass. 172s Preparing to unpack .../225-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 172s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 172s Selecting previously unselected package r-cran-bslib. 172s Preparing to unpack .../226-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 172s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 172s Selecting previously unselected package r-cran-fontawesome. 172s Preparing to unpack .../227-r-cran-fontawesome_0.5.2-1_all.deb ... 172s Unpacking r-cran-fontawesome (0.5.2-1) ... 172s Selecting previously unselected package r-cran-tinytex. 172s Preparing to unpack .../228-r-cran-tinytex_0.49-1_all.deb ... 172s Unpacking r-cran-tinytex (0.49-1) ... 172s Selecting previously unselected package libjs-modernizr. 172s Preparing to unpack .../229-libjs-modernizr_2.6.2+ds1-5_all.deb ... 172s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 172s Selecting previously unselected package r-cran-littler. 172s Preparing to unpack .../230-r-cran-littler_0.3.19-1_arm64.deb ... 172s Unpacking r-cran-littler (0.3.19-1) ... 172s Selecting previously unselected package r-cran-pkgkitten. 172s Preparing to unpack .../231-r-cran-pkgkitten_0.2.3-1_all.deb ... 172s Unpacking r-cran-pkgkitten (0.2.3-1) ... 172s Selecting previously unselected package r-cran-rcpp. 172s Preparing to unpack .../232-r-cran-rcpp_1.0.12-1_arm64.deb ... 172s Unpacking r-cran-rcpp (1.0.12-1) ... 172s Selecting previously unselected package r-cran-later. 172s Preparing to unpack .../233-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 172s Unpacking r-cran-later (1.3.2+dfsg-1) ... 172s Selecting previously unselected package r-cran-promises. 172s Preparing to unpack .../234-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 172s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 172s Selecting previously unselected package r-cran-httpuv. 172s Preparing to unpack .../235-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 172s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 173s Selecting previously unselected package r-cran-xtable. 173s Preparing to unpack .../236-r-cran-xtable_1%3a1.8-4-2_all.deb ... 173s Unpacking r-cran-xtable (1:1.8-4-2) ... 173s Selecting previously unselected package r-cran-sourcetools. 173s Preparing to unpack .../237-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 173s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 173s Selecting previously unselected package r-cran-commonmark. 173s Preparing to unpack .../238-r-cran-commonmark_1.9.1-1_arm64.deb ... 173s Unpacking r-cran-commonmark (1.9.1-1) ... 173s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 173s Preparing to unpack .../239-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 173s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 173s Selecting previously unselected package r-cran-shiny. 173s Preparing to unpack .../240-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 173s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 173s Selecting previously unselected package r-cran-rmarkdown. 173s Preparing to unpack .../241-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 173s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 173s Selecting previously unselected package r-cran-bookdown. 173s Preparing to unpack .../242-r-cran-bookdown_0.37+dfsg-1_all.deb ... 173s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 173s Selecting previously unselected package r-cran-biocmanager. 173s Preparing to unpack .../243-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 173s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 173s Selecting previously unselected package tex-common. 173s Preparing to unpack .../244-tex-common_6.18_all.deb ... 173s Unpacking tex-common (6.18) ... 173s Selecting previously unselected package t1utils. 173s Preparing to unpack .../245-t1utils_1.41-4build2_arm64.deb ... 173s Unpacking t1utils (1.41-4build2) ... 174s Selecting previously unselected package texlive-binaries. 174s Preparing to unpack .../246-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 174s Unpacking texlive-binaries (2023.20230311.66589-9) ... 174s Selecting previously unselected package texlive-base. 174s Preparing to unpack .../247-texlive-base_2023.20240207-1_all.deb ... 174s Unpacking texlive-base (2023.20240207-1) ... 175s Selecting previously unselected package texlive-latex-base. 175s Preparing to unpack .../248-texlive-latex-base_2023.20240207-1_all.deb ... 175s Unpacking texlive-latex-base (2023.20240207-1) ... 176s Selecting previously unselected package texlive-bibtex-extra. 176s Preparing to unpack .../249-texlive-bibtex-extra_2023.20240207-1_all.deb ... 176s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 179s Selecting previously unselected package r-bioc-biocstyle. 179s Preparing to unpack .../250-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 179s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 179s Selecting previously unselected package r-cran-xml. 179s Preparing to unpack .../251-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 179s Unpacking r-cran-xml (3.99-0.16.1-1) ... 179s Selecting previously unselected package r-cran-hms. 179s Preparing to unpack .../252-r-cran-hms_1.1.3-1_all.deb ... 179s Unpacking r-cran-hms (1.1.3-1) ... 180s Selecting previously unselected package r-cran-prettyunits. 180s Preparing to unpack .../253-r-cran-prettyunits_1.2.0-1_all.deb ... 180s Unpacking r-cran-prettyunits (1.2.0-1) ... 180s Selecting previously unselected package r-cran-progress. 180s Preparing to unpack .../254-r-cran-progress_1.2.3-1_all.deb ... 180s Unpacking r-cran-progress (1.2.3-1) ... 180s Selecting previously unselected package r-cran-xml2. 180s Preparing to unpack .../255-r-cran-xml2_1.3.6-1_arm64.deb ... 180s Unpacking r-cran-xml2 (1.3.6-1) ... 180s Selecting previously unselected package r-bioc-biomart. 180s Preparing to unpack .../256-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 180s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 180s Selecting previously unselected package r-bioc-genomicranges. 180s Preparing to unpack .../257-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 180s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 180s Selecting previously unselected package r-bioc-rhtslib. 180s Preparing to unpack .../258-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 180s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 180s Selecting previously unselected package r-bioc-rsamtools. 180s Preparing to unpack .../259-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 180s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 180s Selecting previously unselected package r-cran-matrixstats. 180s Preparing to unpack .../260-r-cran-matrixstats_1.2.0-1_arm64.deb ... 180s Unpacking r-cran-matrixstats (1.2.0-1) ... 181s Selecting previously unselected package r-bioc-matrixgenerics. 181s Preparing to unpack .../261-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 181s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 181s Selecting previously unselected package r-cran-lattice. 181s Preparing to unpack .../262-r-cran-lattice_0.22-5-1_arm64.deb ... 181s Unpacking r-cran-lattice (0.22-5-1) ... 181s Selecting previously unselected package r-cran-matrix. 181s Preparing to unpack .../263-r-cran-matrix_1.6-5-1_arm64.deb ... 181s Unpacking r-cran-matrix (1.6-5-1) ... 181s Selecting previously unselected package r-cran-abind. 181s Preparing to unpack .../264-r-cran-abind_1.4-5-2_all.deb ... 181s Unpacking r-cran-abind (1.4-5-2) ... 181s Selecting previously unselected package r-bioc-s4arrays. 181s Preparing to unpack .../265-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 181s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 181s Selecting previously unselected package r-bioc-sparsearray. 181s Preparing to unpack .../266-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 181s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 181s Selecting previously unselected package r-bioc-delayedarray. 181s Preparing to unpack .../267-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 181s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 181s Selecting previously unselected package r-bioc-summarizedexperiment. 181s Preparing to unpack .../268-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 181s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 181s Selecting previously unselected package r-bioc-genomicalignments. 182s Preparing to unpack .../269-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 182s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 182s Selecting previously unselected package r-cran-rjson. 182s Preparing to unpack .../270-r-cran-rjson_0.2.21-1_arm64.deb ... 182s Unpacking r-cran-rjson (0.2.21-1) ... 182s Selecting previously unselected package r-cran-restfulr. 182s Preparing to unpack .../271-r-cran-restfulr_0.0.15-1_arm64.deb ... 182s Unpacking r-cran-restfulr (0.0.15-1) ... 182s Selecting previously unselected package r-bioc-rtracklayer. 182s Preparing to unpack .../272-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 182s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 182s Selecting previously unselected package r-bioc-bsgenome. 182s Preparing to unpack .../273-r-bioc-bsgenome_1.70.2-1_all.deb ... 182s Unpacking r-bioc-bsgenome (1.70.2-1) ... 182s Selecting previously unselected package r-bioc-genomicfeatures. 182s Preparing to unpack .../274-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 182s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 182s Selecting previously unselected package r-cran-data.table. 182s Preparing to unpack .../275-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 182s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 182s Selecting previously unselected package r-cran-r.methodss3. 182s Preparing to unpack .../276-r-cran-r.methodss3_1.8.2-1_all.deb ... 182s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 182s Selecting previously unselected package r-cran-r.oo. 182s Preparing to unpack .../277-r-cran-r.oo_1.26.0-1_all.deb ... 182s Unpacking r-cran-r.oo (1.26.0-1) ... 182s Selecting previously unselected package r-cran-r.utils. 183s Preparing to unpack .../278-r-cran-r.utils_2.12.3-1_all.deb ... 183s Unpacking r-cran-r.utils (2.12.3-1) ... 183s Selecting previously unselected package r-cran-runit. 183s Preparing to unpack .../279-r-cran-runit_0.4.32-3_all.deb ... 183s Unpacking r-cran-runit (0.4.32-3) ... 183s Selecting previously unselected package autopkgtest-satdep. 183s Preparing to unpack .../280-1-autopkgtest-satdep.deb ... 183s Unpacking autopkgtest-satdep (0) ... 183s Setting up libjs-json (0~20221030+~1.0.8-1) ... 183s Setting up javascript-common (11+nmu1) ... 183s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 183s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 183s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 183s Setting up libpaper1:arm64 (1.1.29) ... 183s 183s Creating config file /etc/papersize with new version 183s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 183s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 183s Setting up libxpm4:arm64 (1:3.5.17-1) ... 183s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 183s Setting up libxi6:arm64 (2:1.8.1-1) ... 183s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 183s Setting up libdatrie1:arm64 (0.2.13-3) ... 183s Setting up libjs-popper.js (1.16.1+ds-6) ... 183s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 183s Setting up libxcb-render0:arm64 (1.15-1) ... 183s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 183s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 183s Setting up libjs-lunr (2.3.9~dfsg-2) ... 183s Setting up unzip (6.0-28ubuntu3) ... 183s Setting up liblatex-tounicode-perl (0.54-2) ... 183s Setting up x11-common (1:7.7+23ubuntu2) ... 184s Setting up node-html5shiv (3.7.3+dfsg-5) ... 184s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 184s Setting up libdeflate0:arm64 (1.19-1) ... 184s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 184s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 184s Setting up libxcb-shm0:arm64 (1.15-1) ... 184s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 184s Setting up libpaper-utils (1.1.29) ... 184s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 184s Setting up libjs-modernizr (2.6.2+ds1-5) ... 184s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 184s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 184s Setting up libjs-es5-shim (4.6.7-2) ... 184s Setting up tex-common (6.18) ... 184s update-language: texlive-base not installed and configured, doing nothing! 184s Setting up libio-string-perl (1.08-4) ... 184s Setting up zip (3.0-13) ... 184s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 184s Setting up libblas3:arm64 (3.12.0-3) ... 184s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 184s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 184s Setting up libpkgconf3:arm64 (1.8.1-2) ... 184s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 184s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 184s Setting up t1utils (1.41-4build2) ... 184s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 184s Setting up libjs-d3 (3.5.17-4) ... 184s Setting up fonts-dejavu-mono (2.37-8) ... 184s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 184s Setting up libmpc3:arm64 (1.3.1-1) ... 184s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 184s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 184s Setting up icu-devtools (74.2-1ubuntu1) ... 184s Setting up fonts-dejavu-core (2.37-8) ... 184s Setting up pkgconf-bin (1.8.1-2) ... 184s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 184s Setting up libkpathsea6:arm64 (2023.20230311.66589-9) ... 184s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 184s Setting up libwebp7:arm64 (1.3.2-0.4) ... 184s Setting up libreadline8t64:arm64 (8.2-3.1) ... 184s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 184s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 184s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 184s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 184s Setting up libnsl-dev:arm64 (1.3.0-3) ... 184s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 184s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 184s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 184s Setting up fonts-lmodern (2.005-1) ... 184s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 184s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 184s Setting up libthai-data (0.1.29-2) ... 184s Setting up node-bootstrap-sass (3.4.3-2) ... 184s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 184s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 184s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 184s Setting up pandoc-data (3.1.3-1) ... 184s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 184s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 184s Setting up libisl23:arm64 (0.26-3) ... 184s Setting up libc-dev-bin (2.39-0ubuntu2) ... 184s Setting up node-normalize.css (8.0.1-5) ... 184s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 184s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 184s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 184s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 184s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 184s Setting up libblas-dev:arm64 (3.12.0-3) ... 184s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 184s Setting up dctrl-tools (2.24-3build2) ... 184s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 184s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 184s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 184s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 184s Setting up libpotrace0:arm64 (1.16-2) ... 184s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 184s Setting up libice6:arm64 (2:1.0.10-1build2) ... 184s Setting up liblapack3:arm64 (3.12.0-3) ... 184s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 184s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 184s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 184s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 185s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 185s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 185s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 185s Setting up pkgconf:arm64 (1.8.1-2) ... 185s Setting up libthai0:arm64 (0.1.29-2) ... 185s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 185s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 185s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 185s Setting up pandoc (3.1.3+ds-2) ... 185s Setting up liblapack-dev:arm64 (3.12.0-3) ... 185s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 185s Setting up pkg-config:arm64 (1.8.1-2) ... 185s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 185s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 185s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 185s Setting up curl (8.5.0-2ubuntu7) ... 185s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 185s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 185s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 185s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 185s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 185s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 185s Setting up fontconfig (2.15.0-1ubuntu1) ... 187s Regenerating fonts cache... done. 187s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 187s Setting up libxft2:arm64 (2.3.6-1) ... 187s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 187s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 187s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 187s Setting up cpp-13 (13.2.0-17ubuntu2) ... 187s Setting up libtk8.6:arm64 (8.6.13-2) ... 187s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 187s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 187s Setting up libreadline-dev:arm64 (8.2-3.1) ... 187s Setting up libcairo2:arm64 (1.18.0-1) ... 187s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 187s Setting up gcc-13 (13.2.0-17ubuntu2) ... 187s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 187s Setting up cpp (4:13.2.0-7ubuntu1) ... 187s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 187s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 187s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 187s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 187s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 187s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 187s Setting up g++-13 (13.2.0-17ubuntu2) ... 187s Setting up libxmu6:arm64 (2:1.1.3-3) ... 187s Setting up libpng-dev:arm64 (1.6.43-3) ... 187s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 187s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 187s Setting up libxaw7:arm64 (2:1.0.14-1) ... 187s Setting up gcc (4:13.2.0-7ubuntu1) ... 187s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 187s Setting up r-base-core (4.3.3-2build1) ... 188s 188s Creating config file /etc/R/Renviron with new version 188s Setting up r-cran-crayon (1.5.2-1) ... 188s Setting up r-cran-sourcetools (0.1.7-1-1) ... 188s Setting up r-cran-futile.options (1.0.1-3build1) ... 188s Setting up r-cran-lattice (0.22-5-1) ... 188s Setting up r-cran-formatr (1.14-1) ... 188s Setting up r-cran-xml (3.99-0.16.1-1) ... 188s Setting up texlive-binaries (2023.20230311.66589-9) ... 188s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 188s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 188s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 188s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 188s Setting up r-cran-commonmark (1.9.1-1) ... 188s Setting up r-cran-r6 (2.5.1-1) ... 188s Setting up r-cran-pkgkitten (0.2.3-1) ... 188s Setting up texlive-base (2023.20240207-1) ... 189s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 189s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 189s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 189s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 190s Setting up r-cran-magrittr (2.0.3-1) ... 190s Setting up r-cran-rappdirs (0.3.3-1) ... 190s Setting up r-cran-filelock (1.0.3-1) ... 190s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 190s Setting up r-cran-littler (0.3.19-1) ... 190s Setting up r-cran-bh (1.84.0-1) ... 190s Setting up r-cran-fs (1.6.3+dfsg-1) ... 190s Setting up r-cran-rcpp (1.0.12-1) ... 190s Setting up r-cran-curl (5.2.0+dfsg-1) ... 190s Setting up r-cran-codetools (0.2-19-1) ... 190s Setting up r-bioc-biocgenerics (0.48.1-2) ... 190s Setting up r-cran-rlang (1.1.3-1) ... 190s Setting up r-cran-matrixstats (1.2.0-1) ... 190s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 190s Setting up r-cran-xfun (0.41+dfsg-1) ... 190s Setting up r-cran-sys (3.4.2-1) ... 190s Setting up r-cran-plogr (0.2.0-3build1) ... 190s Setting up r-cran-withr (2.5.0-1) ... 190s Setting up r-cran-mime (0.12-1) ... 190s Setting up r-cran-generics (0.1.3-1) ... 190s Setting up r-cran-base64enc (0.1-3-3) ... 190s Setting up r-cran-abind (1.4-5-2) ... 190s Setting up r-cran-digest (0.6.34-1) ... 190s Setting up r-cran-yaml (2.3.8-1) ... 190s Setting up r-cran-lambda.r (1.2.4-2build1) ... 190s Setting up r-cran-evaluate (0.23-1) ... 190s Setting up r-cran-dbi (1.2.2-1) ... 190s Setting up r-cran-highr (0.10+dfsg-1) ... 190s Setting up r-cran-prettyunits (1.2.0-1) ... 190s Setting up r-cran-fansi (1.0.5-1) ... 190s Setting up r-cran-snow (1:0.4.4-2) ... 190s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 190s Setting up r-cran-glue (1.7.0-1) ... 190s Setting up r-cran-bit (4.0.5-1) ... 190s Setting up r-cran-xtable (1:1.8-4-2) ... 190s Setting up r-cran-cli (3.6.2-1) ... 190s Setting up gfortran (4:13.2.0-7ubuntu1) ... 190s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 190s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 190s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 190s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 190s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 190s Setting up r-cran-bitops (1.0-7-1) ... 190s Setting up r-cran-bit64 (4.0.5-1) ... 190s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 190s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 190s Setting up r-cran-askpass (1.2.0-1) ... 190s Setting up r-cran-fastmap (1.1.1-1) ... 190s Setting up r-cran-png (0.1-8-1) ... 190s Setting up r-cran-r.methodss3 (1.8.2-1) ... 190s Setting up r-bioc-biobase (2.62.0-1) ... 190s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 190s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 190s Setting up r-cran-utf8 (1.2.4-1) ... 190s Setting up r-cran-stringi (1.8.3-1) ... 190s Setting up texlive-latex-base (2023.20240207-1) ... 190s Setting up r-cran-cpp11 (0.4.7-1) ... 190s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 190s Setting up r-cran-runit (0.4.32-3) ... 190s Setting up r-cran-futile.logger (1.4.3-4build1) ... 190s Setting up r-cran-later (1.3.2+dfsg-1) ... 190s Setting up r-cran-matrix (1.6-5-1) ... 190s Setting up r-cran-tinytex (0.49-1) ... 190s Setting up r-cran-knitr (1.45+dfsg-1) ... 190s Setting up g++ (4:13.2.0-7ubuntu1) ... 190s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 190s Setting up r-cran-cachem (1.0.8-1) ... 190s Setting up build-essential (12.10ubuntu1) ... 190s Setting up r-bioc-iranges (2.36.0-1) ... 190s Setting up r-cran-rjson (0.2.21-1) ... 190s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 190s Setting up r-cran-restfulr (0.0.15-1) ... 190s Setting up r-cran-vctrs (0.6.5-1) ... 190s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 190s Setting up r-cran-ellipsis (0.3.2-2) ... 190s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 190s Setting up r-base-dev (4.3.3-2build1) ... 190s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 190s Setting up r-cran-stringr (1.5.1-1) ... 190s Setting up r-bioc-biocparallel (1.36.0-1) ... 190s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 190s Setting up r-cran-xml2 (1.3.6-1) ... 190s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 190s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 190s Setting up r-cran-r.oo (1.26.0-1) ... 190s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 190s Setting up texlive-bibtex-extra (2023.20240207-1) ... 190s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 190s Setting up r-cran-httr (1.4.7+dfsg-1) ... 190s Setting up r-cran-hms (1.1.3-1) ... 190s Setting up r-cran-memoise (2.0.1-1) ... 190s Setting up r-cran-promises (1.2.1+dfsg-1) ... 190s Setting up r-cran-purrr (1.0.2-1) ... 190s Setting up r-cran-blob (1.2.4-1) ... 190s Setting up r-cran-htmltools (0.5.7-1) ... 190s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 190s Setting up r-bioc-xvector (0.42.0-1) ... 190s Setting up r-cran-sass (0.4.8+dfsg-1) ... 190s Setting up r-cran-dplyr (1.1.4-1) ... 190s Setting up r-cran-rsqlite (2.3.4-1) ... 190s Setting up r-cran-progress (1.2.3-1) ... 190s Setting up r-cran-r.utils (2.12.3-1) ... 190s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 190s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 190s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 190s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 190s Setting up r-cran-fontawesome (0.5.2-1) ... 190s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 190s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 190s Setting up r-cran-tidyr (1.3.1-1) ... 190s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 190s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 190s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 190s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 190s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 190s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 190s Setting up r-bioc-annotationdbi (1.64.1-1) ... 190s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 190s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 190s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 190s Setting up r-bioc-genomicalignments (1.38.2-1) ... 190s Setting up r-cran-bookdown (0.37+dfsg-1) ... 190s Setting up r-bioc-rtracklayer (1.62.0-1) ... 190s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 190s Setting up r-bioc-bsgenome (1.70.2-1) ... 190s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 190s Setting up autopkgtest-satdep (0) ... 190s Processing triggers for man-db (2.12.0-3) ... 192s Processing triggers for install-info (7.1-3) ... 192s Processing triggers for libc-bin (2.39-0ubuntu2) ... 192s Processing triggers for tex-common (6.18) ... 193s Running updmap-sys. This may take some time... done. 193s Running mktexlsr /var/lib/texmf ... done. 193s Building format(s) --all. 231s This may take some time... done. 245s (Reading database ... 124514 files and directories currently installed.) 245s Removing autopkgtest-satdep (0) ... 246s autopkgtest [17:35:09]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 246s autopkgtest [17:35:09]: test pkg-r-autopkgtest: [----------------------- 246s Test: Try to load the R library GenomeInfoDb 247s 247s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 247s Copyright (C) 2024 The R Foundation for Statistical Computing 247s Platform: aarch64-unknown-linux-gnu (64-bit) 247s 247s R is free software and comes with ABSOLUTELY NO WARRANTY. 247s You are welcome to redistribute it under certain conditions. 247s Type 'license()' or 'licence()' for distribution details. 247s 247s R is a collaborative project with many contributors. 247s Type 'contributors()' for more information and 247s 'citation()' on how to cite R or R packages in publications. 247s 247s Type 'demo()' for some demos, 'help()' for on-line help, or 247s 'help.start()' for an HTML browser interface to help. 247s Type 'q()' to quit R. 247s 247s > library('GenomeInfoDb') 247s Loading required package: BiocGenerics 247s 247s Attaching package: ‘BiocGenerics’ 247s 247s The following objects are masked from ‘package:stats’: 247s 247s IQR, mad, sd, var, xtabs 247s 247s The following objects are masked from ‘package:base’: 247s 247s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 247s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 247s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 247s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 247s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 247s table, tapply, union, unique, unsplit, which.max, which.min 247s 247s Loading required package: S4Vectors 247s Loading required package: stats4 248s 248s Attaching package: ‘S4Vectors’ 248s 248s The following object is masked from ‘package:utils’: 248s 248s findMatches 248s 248s The following objects are masked from ‘package:base’: 248s 248s expand.grid, I, unname 248s 248s Loading required package: IRanges 249s > 249s > 249s Other tests are currently unsupported! 249s They will be progressively added. 249s autopkgtest [17:35:12]: test pkg-r-autopkgtest: -----------------------] 250s pkg-r-autopkgtest PASS 250s autopkgtest [17:35:13]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 250s autopkgtest [17:35:13]: @@@@@@@@@@@@@@@@@@@@ summary 250s pkg-r-autopkgtest PASS 254s Creating nova instance adt-noble-arm64-r-bioc-genomeinfodb-20240316-173103-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...