0s autopkgtest [13:53:57]: starting date and time: 2024-03-16 13:53:57+0000 0s autopkgtest [13:53:57]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:53:57]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rv6cv5qc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-cran-rcurl,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-genomeinfodb --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-rcurl/1.98-1.14+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-arm64-12.secgroup --name adt-noble-arm64-r-bioc-genomeinfodb-20240316-135357-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 176s autopkgtest [13:56:53]: testbed dpkg architecture: arm64 177s autopkgtest [13:56:54]: testbed apt version: 2.7.12 177s autopkgtest [13:56:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 179s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 180s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 183s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 183s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 183s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 183s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 183s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 183s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 183s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 183s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 186s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 186s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 186s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 204s Fetched 9092 kB in 12s (754 kB/s) 206s Reading package lists... 216s Reading package lists... 218s Building dependency tree... 218s Reading state information... 220s Calculating upgrade... 222s The following packages will be REMOVED: 222s libssl3 222s The following NEW packages will be installed: 222s libssl3t64 222s The following packages have been kept back: 222s curl 222s The following packages will be upgraded: 222s openssl 222s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 222s Need to get 2753 kB of archives. 222s After this operation, 72.7 kB of additional disk space will be used. 222s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 223s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 225s Fetched 2753 kB in 1s (2057 kB/s) 226s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 226s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 226s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 227s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 227s wget depends on libssl3 (>= 3.0.0). 227s u-boot-tools depends on libssl3 (>= 3.0.0). 227s tnftp depends on libssl3 (>= 3.0.0). 227s tcpdump depends on libssl3 (>= 3.0.0). 227s systemd-resolved depends on libssl3 (>= 3.0.0). 227s systemd depends on libssl3 (>= 3.0.0). 227s sudo depends on libssl3 (>= 3.0.0). 227s sbsigntool depends on libssl3 (>= 3.0.0). 227s rsync depends on libssl3 (>= 3.0.0). 227s python3-cryptography depends on libssl3 (>= 3.0.0). 227s openssh-server depends on libssl3 (>= 3.0.10). 227s openssh-client depends on libssl3 (>= 3.0.10). 227s mtd-utils depends on libssl3 (>= 3.0.0). 227s mokutil depends on libssl3 (>= 3.0.0). 227s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 227s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 227s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 227s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 227s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 227s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 227s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 227s libnvme1 depends on libssl3 (>= 3.0.0). 227s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 227s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 227s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 227s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 227s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 227s kmod depends on libssl3 (>= 3.0.0). 227s dhcpcd-base depends on libssl3 (>= 3.0.0). 227s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 227s 228s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 228s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 228s Selecting previously unselected package libssl3t64:arm64. 228s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 228s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 228s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 228s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 228s Setting up openssl (3.0.13-0ubuntu1) ... 228s Processing triggers for man-db (2.12.0-3) ... 231s Processing triggers for libc-bin (2.39-0ubuntu2) ... 233s Reading package lists... 234s Building dependency tree... 234s Reading state information... 237s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 239s sh: Attempting to set up Debian/Ubuntu apt sources automatically 239s sh: Distribution appears to be Ubuntu 244s Reading package lists... 246s Building dependency tree... 246s Reading state information... 248s eatmydata is already the newest version (131-1). 248s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 248s Reading package lists... 249s Building dependency tree... 249s Reading state information... 251s dbus is already the newest version (1.14.10-4ubuntu1). 251s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 251s Reading package lists... 252s Building dependency tree... 252s Reading state information... 256s rng-tools-debian is already the newest version (2.4). 256s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 256s Reading package lists... 257s Building dependency tree... 257s Reading state information... 260s The following packages will be REMOVED: 260s cloud-init* python3-configobj* python3-debconf* 262s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 262s After this operation, 3252 kB disk space will be freed. 262s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75852 files and directories currently installed.) 262s Removing cloud-init (24.1.1-0ubuntu1) ... 266s Removing python3-configobj (5.0.8-3) ... 267s Removing python3-debconf (1.5.86) ... 267s Processing triggers for man-db (2.12.0-3) ... 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75463 files and directories currently installed.) 269s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 277s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 277s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 277s invoke-rc.d: policy-rc.d denied execution of try-restart. 279s Reading package lists... 279s Building dependency tree... 279s Reading state information... 284s linux-generic is already the newest version (6.8.0-11.11+1). 284s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 285s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 285s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 285s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 301s Reading package lists... 301s Reading package lists... 302s Building dependency tree... 302s Reading state information... 304s Calculating upgrade... 306s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 306s Reading package lists... 307s Building dependency tree... 307s Reading state information... 310s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 310s autopkgtest [13:59:07]: rebooting testbed after setup commands that affected boot 483s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 495s autopkgtest [14:02:12]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 500s autopkgtest [14:02:17]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomeinfodb 509s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomeinfodb 1.38.6+dfsg-1 (dsc) [2300 B] 509s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomeinfodb 1.38.6+dfsg-1 (tar) [3261 kB] 509s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomeinfodb 1.38.6+dfsg-1 (diff) [5552 B] 510s gpgv: Signature made Tue Feb 13 12:41:34 2024 UTC 510s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 510s gpgv: issuer "tille@debian.org" 510s gpgv: Can't check signature: No public key 510s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomeinfodb_1.38.6+dfsg-1.dsc: no acceptable signature found 511s autopkgtest [14:02:28]: testing package r-bioc-genomeinfodb version 1.38.6+dfsg-1 511s autopkgtest [14:02:28]: build not needed 513s autopkgtest [14:02:30]: test pkg-r-autopkgtest: preparing testbed 515s Reading package lists... 516s Building dependency tree... 516s Reading state information... 517s Starting pkgProblemResolver with broken count: 0 518s Starting 2 pkgProblemResolver with broken count: 0 518s Done 520s The following additional packages will be installed: 520s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 520s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 520s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 520s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 520s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 520s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 520s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 520s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 520s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 520s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 520s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 520s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 520s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 520s libjs-highlight.js libjs-jquery libjs-jquery-datatables 520s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 520s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 520s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 520s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 520s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 520s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 520s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 520s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 520s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 520s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 520s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 520s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev 520s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 520s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 520s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 520s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 520s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 520s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 520s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 520s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 520s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 520s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 520s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 520s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 520s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 520s r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr 520s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 520s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 520s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 520s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 520s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 520s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 520s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 520s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 520s r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 520s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 520s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 520s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 520s r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 520s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 520s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 520s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 520s x11-common xdg-utils zip zlib1g-dev 520s Suggested packages: 520s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 520s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 520s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 520s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 520s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 520s libboost-context1.83-dev libboost-contract1.83-dev 520s libboost-coroutine1.83-dev libboost-date-time1.83-dev 520s libboost-exception1.83-dev libboost-fiber1.83-dev 520s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 520s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 520s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 520s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 520s libboost-numpy1.83-dev libboost-program-options1.83-dev 520s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 520s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 520s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 520s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 520s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 520s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 520s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 520s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 520s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 520s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 520s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 520s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 520s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 520s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 520s r-cran-doparallel r-bioc-variantannotation r-bioc-shortread 520s r-cran-batchtools r-cran-mockery r-cran-webmockr r-bioc-hdf5array 520s r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-edger 520s r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz 520s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 520s r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-rstudioapi 520s r-cran-rmysql r-cran-lubridate r-cran-getopt r-cran-formattable 520s r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-scales 520s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 520s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 520s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 520s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 520s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 520s Recommended packages: 520s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 520s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 520s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 520s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 520s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 520s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 520s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 520s r-cran-webutils r-cran-xts r-cran-nanotime r-cran-zoo r-cran-rpostgresql 520s r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-survival 520s r-cran-pkgload r-cran-waldo r-cran-cairo r-cran-markdown r-cran-ragg 520s r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick 520s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 520s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 520s r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis r-cran-dygraphs 520s r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-mockr 520s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 520s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 520s x11-xserver-utils 521s The following NEW packages will be installed: 521s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 521s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 521s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 521s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 521s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 521s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 521s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 521s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 521s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 521s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 521s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 521s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 521s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 521s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 521s libjs-highlight.js libjs-jquery libjs-jquery-datatables 521s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 521s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 521s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 521s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 521s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 521s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 521s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 521s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 521s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 521s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 521s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 521s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev 521s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 521s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 521s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 521s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 521s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 521s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 521s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 521s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 521s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 521s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 521s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 521s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 521s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 521s r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr 521s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 521s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 521s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 521s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 521s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 521s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 521s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 521s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 521s r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 521s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 521s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 521s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 521s r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 521s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 521s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 521s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 521s x11-common xdg-utils zip zlib1g-dev 521s 0 upgraded, 280 newly installed, 0 to remove and 0 not upgraded. 521s Need to get 426 MB/426 MB of archives. 521s After this operation, 1345 MB of additional disk space will be used. 521s Get:1 /tmp/autopkgtest.EfxpcT/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [804 B] 521s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 522s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 523s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 523s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 523s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 523s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 523s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 524s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 524s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 524s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 526s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 526s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 526s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 526s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 526s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 526s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 526s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 526s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 526s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 526s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 527s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 527s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 527s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 527s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 528s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 528s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 529s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 529s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 529s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 529s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 529s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 529s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 529s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 529s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 529s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 530s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 530s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 530s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 530s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 530s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 530s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 530s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 530s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 530s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 530s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 530s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 531s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 531s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 531s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 531s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 531s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 531s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 531s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 531s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 531s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 531s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 531s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 532s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 532s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 532s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 532s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 532s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 532s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 532s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 532s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 532s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 532s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 532s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 533s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 533s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 533s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 533s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 533s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 533s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 533s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 533s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 533s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 533s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 533s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 533s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 534s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 534s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 534s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 534s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 534s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 534s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 534s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 534s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 534s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 534s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 534s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 534s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 534s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 534s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 534s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 534s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 534s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 534s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 534s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 534s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 534s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 534s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 535s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 535s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 535s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 535s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 535s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 535s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 535s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 535s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 535s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 535s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 535s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 535s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 535s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 535s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 535s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 535s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 535s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 535s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 535s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 535s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 535s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 535s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 535s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 535s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 535s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 535s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 535s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 535s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 535s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 535s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 535s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 535s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 535s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 535s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 535s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 537s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 537s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 537s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 537s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 537s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 537s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 537s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 539s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 539s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 539s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 539s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 539s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 539s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 539s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 539s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 539s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 539s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 539s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 539s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 539s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 539s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 539s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 539s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 540s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 540s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 540s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 540s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 540s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 540s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 540s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 540s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 540s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 540s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 540s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 540s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 540s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 540s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 540s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 540s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 540s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 540s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 540s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 540s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 540s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 541s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 541s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 541s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 541s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 541s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 542s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 542s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 542s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 542s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 542s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 542s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 542s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 542s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 542s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 542s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 542s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 542s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 542s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 542s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 542s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 542s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 542s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 543s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 543s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 543s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 543s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 543s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 543s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 543s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 543s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 543s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 543s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 543s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 543s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 544s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 544s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 544s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 544s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 544s Get:221 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 545s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 545s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 545s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 545s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 545s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 545s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 545s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 545s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 546s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 546s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 546s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 546s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 546s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 546s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 546s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 546s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 546s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 546s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 546s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 546s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 546s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 546s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 546s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 546s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 546s Get:246 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 547s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 547s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 549s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 549s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 554s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 554s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 554s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 554s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 554s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 554s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 554s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 554s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 554s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 554s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 555s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 555s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 555s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 555s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 555s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 555s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 555s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 555s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 556s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 556s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 556s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 556s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 556s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 556s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 557s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 557s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 557s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 557s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 557s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 557s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 560s Preconfiguring packages ... 561s Fetched 426 MB in 36s (12.0 MB/s) 562s Selecting previously unselected package libc-dev-bin. 563s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75408 files and directories currently installed.) 563s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 563s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 563s Selecting previously unselected package linux-libc-dev:arm64. 563s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 563s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 564s Selecting previously unselected package libcrypt-dev:arm64. 565s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 565s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 565s Selecting previously unselected package libtirpc-dev:arm64. 565s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 565s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 565s Selecting previously unselected package libnsl-dev:arm64. 565s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 565s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 565s Selecting previously unselected package rpcsvc-proto. 565s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 565s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 565s Selecting previously unselected package libc6-dev:arm64. 565s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 565s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 566s Selecting previously unselected package libisl23:arm64. 566s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 566s Unpacking libisl23:arm64 (0.26-3) ... 566s Selecting previously unselected package libmpc3:arm64. 566s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 566s Unpacking libmpc3:arm64 (1.3.1-1) ... 566s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 566s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 566s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 567s Selecting previously unselected package cpp-13. 567s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 568s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 568s Selecting previously unselected package cpp-aarch64-linux-gnu. 568s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 568s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 568s Selecting previously unselected package cpp. 568s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 568s Unpacking cpp (4:13.2.0-7ubuntu1) ... 568s Selecting previously unselected package libcc1-0:arm64. 568s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 568s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 568s Selecting previously unselected package libgomp1:arm64. 568s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 568s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 568s Selecting previously unselected package libitm1:arm64. 568s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 568s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 568s Selecting previously unselected package libatomic1:arm64. 568s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 568s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 568s Selecting previously unselected package libasan8:arm64. 568s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 568s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 569s Selecting previously unselected package liblsan0:arm64. 569s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 569s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 569s Selecting previously unselected package libtsan2:arm64. 569s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 569s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 569s Selecting previously unselected package libubsan1:arm64. 569s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 569s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 570s Selecting previously unselected package libhwasan0:arm64. 570s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 570s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 570s Selecting previously unselected package libgcc-13-dev:arm64. 570s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 570s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 570s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 571s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 571s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 573s Selecting previously unselected package gcc-13. 573s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 573s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 573s Selecting previously unselected package gcc-aarch64-linux-gnu. 573s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 573s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 573s Selecting previously unselected package gcc. 573s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 573s Unpacking gcc (4:13.2.0-7ubuntu1) ... 573s Selecting previously unselected package libstdc++-13-dev:arm64. 573s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 573s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 575s Selecting previously unselected package g++-13-aarch64-linux-gnu. 575s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 575s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 576s Selecting previously unselected package g++-13. 576s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 576s Unpacking g++-13 (13.2.0-17ubuntu2) ... 576s Selecting previously unselected package g++-aarch64-linux-gnu. 576s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 576s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 576s Selecting previously unselected package g++. 576s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 576s Unpacking g++ (4:13.2.0-7ubuntu1) ... 576s Selecting previously unselected package build-essential. 576s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 576s Unpacking build-essential (12.10ubuntu1) ... 577s Selecting previously unselected package dctrl-tools. 577s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 577s Unpacking dctrl-tools (2.24-3build2) ... 577s Selecting previously unselected package fonts-dejavu-mono. 577s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 577s Unpacking fonts-dejavu-mono (2.37-8) ... 577s Selecting previously unselected package fonts-dejavu-core. 577s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 577s Unpacking fonts-dejavu-core (2.37-8) ... 577s Selecting previously unselected package fontconfig-config. 577s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 579s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 579s Selecting previously unselected package libfontconfig1:arm64. 579s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 579s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 579s Selecting previously unselected package fontconfig. 579s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 579s Unpacking fontconfig (2.15.0-1ubuntu1) ... 579s Selecting previously unselected package fonts-font-awesome. 579s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 579s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 579s Selecting previously unselected package fonts-glyphicons-halflings. 579s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 579s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 579s Selecting previously unselected package fonts-lmodern. 579s Preparing to unpack .../041-fonts-lmodern_2.005-1_all.deb ... 579s Unpacking fonts-lmodern (2.005-1) ... 580s Selecting previously unselected package fonts-mathjax. 580s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 580s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 580s Selecting previously unselected package libgfortran5:arm64. 580s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 580s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 581s Selecting previously unselected package libgfortran-13-dev:arm64. 581s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 581s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 581s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 581s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 581s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 582s Selecting previously unselected package gfortran-13. 582s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 582s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 582s Selecting previously unselected package gfortran-aarch64-linux-gnu. 583s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 583s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 583s Selecting previously unselected package gfortran. 583s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 583s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 583s Selecting previously unselected package icu-devtools. 583s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_arm64.deb ... 583s Unpacking icu-devtools (74.2-1ubuntu1) ... 583s Selecting previously unselected package javascript-common. 583s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 583s Unpacking javascript-common (11+nmu1) ... 583s Selecting previously unselected package libio-string-perl. 583s Preparing to unpack .../051-libio-string-perl_1.08-4_all.deb ... 583s Unpacking libio-string-perl (1.08-4) ... 583s Selecting previously unselected package liblatex-tounicode-perl. 583s Preparing to unpack .../052-liblatex-tounicode-perl_0.54-2_all.deb ... 583s Unpacking liblatex-tounicode-perl (0.54-2) ... 583s Selecting previously unselected package libbibtex-parser-perl. 584s Preparing to unpack .../053-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 584s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 584s Selecting previously unselected package libblas3:arm64. 584s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 584s Unpacking libblas3:arm64 (3.12.0-3) ... 584s Selecting previously unselected package libblas-dev:arm64. 584s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 584s Unpacking libblas-dev:arm64 (3.12.0-3) ... 584s Selecting previously unselected package libboost1.83-dev:arm64. 584s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 584s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 603s Selecting previously unselected package libboost-dev:arm64. 603s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 603s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 603s Selecting previously unselected package libbz2-dev:arm64. 603s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 603s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 603s Selecting previously unselected package libpixman-1-0:arm64. 603s Preparing to unpack .../059-libpixman-1-0_0.42.2-1_arm64.deb ... 603s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 603s Selecting previously unselected package libxcb-render0:arm64. 603s Preparing to unpack .../060-libxcb-render0_1.15-1_arm64.deb ... 603s Unpacking libxcb-render0:arm64 (1.15-1) ... 603s Selecting previously unselected package libxcb-shm0:arm64. 604s Preparing to unpack .../061-libxcb-shm0_1.15-1_arm64.deb ... 604s Unpacking libxcb-shm0:arm64 (1.15-1) ... 604s Selecting previously unselected package libxrender1:arm64. 604s Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 604s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 604s Selecting previously unselected package libcairo2:arm64. 604s Preparing to unpack .../063-libcairo2_1.18.0-1_arm64.deb ... 604s Unpacking libcairo2:arm64 (1.18.0-1) ... 604s Selecting previously unselected package libdatrie1:arm64. 604s Preparing to unpack .../064-libdatrie1_0.2.13-3_arm64.deb ... 604s Unpacking libdatrie1:arm64 (0.2.13-3) ... 604s Selecting previously unselected package libdeflate0:arm64. 604s Preparing to unpack .../065-libdeflate0_1.19-1_arm64.deb ... 604s Unpacking libdeflate0:arm64 (1.19-1) ... 604s Selecting previously unselected package libgraphite2-3:arm64. 604s Preparing to unpack .../066-libgraphite2-3_1.3.14-2_arm64.deb ... 604s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 604s Selecting previously unselected package libharfbuzz0b:arm64. 604s Preparing to unpack .../067-libharfbuzz0b_8.3.0-2_arm64.deb ... 604s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 605s Selecting previously unselected package x11-common. 605s Preparing to unpack .../068-x11-common_1%3a7.7+23ubuntu2_all.deb ... 605s Unpacking x11-common (1:7.7+23ubuntu2) ... 605s Selecting previously unselected package libice6:arm64. 605s Preparing to unpack .../069-libice6_2%3a1.0.10-1build2_arm64.deb ... 605s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 605s Selecting previously unselected package libicu-dev:arm64. 605s Preparing to unpack .../070-libicu-dev_74.2-1ubuntu1_arm64.deb ... 605s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 607s Selecting previously unselected package libjpeg-turbo8:arm64. 607s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 607s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 607s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 607s Preparing to unpack .../072-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 607s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 607s Selecting previously unselected package libjpeg8:arm64. 607s Preparing to unpack .../073-libjpeg8_8c-2ubuntu11_arm64.deb ... 607s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 608s Selecting previously unselected package libjpeg8-dev:arm64. 608s Preparing to unpack .../074-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 608s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 608s Selecting previously unselected package libjpeg-dev:arm64. 608s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 608s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 608s Selecting previously unselected package libjs-bootstrap. 608s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 608s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 608s Selecting previously unselected package libjs-popper.js. 608s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 608s Unpacking libjs-popper.js (1.16.1+ds-6) ... 608s Selecting previously unselected package libjs-bootstrap4. 608s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 608s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 609s Selecting previously unselected package libjs-d3. 609s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 609s Unpacking libjs-d3 (3.5.17-4) ... 609s Selecting previously unselected package libjs-es5-shim. 609s Preparing to unpack .../080-libjs-es5-shim_4.6.7-2_all.deb ... 609s Unpacking libjs-es5-shim (4.6.7-2) ... 609s Selecting previously unselected package libjs-highlight.js. 609s Preparing to unpack .../081-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 609s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 610s Selecting previously unselected package libjs-jquery. 610s Preparing to unpack .../082-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 610s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 610s Selecting previously unselected package libjs-jquery-datatables. 610s Preparing to unpack .../083-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 610s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 610s Selecting previously unselected package libjs-sifter.js. 610s Preparing to unpack .../084-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 610s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 610s Selecting previously unselected package libjs-microplugin.js. 610s Preparing to unpack .../085-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 610s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 611s Selecting previously unselected package libjs-jquery-selectize.js. 611s Preparing to unpack .../086-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 611s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 611s Selecting previously unselected package libjs-jquery-ui. 611s Preparing to unpack .../087-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 611s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 611s Selecting previously unselected package libjs-json. 611s Preparing to unpack .../088-libjs-json_0~20221030+~1.0.8-1_all.deb ... 611s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 611s Selecting previously unselected package libjs-lunr. 611s Preparing to unpack .../089-libjs-lunr_2.3.9~dfsg-2_all.deb ... 611s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 611s Selecting previously unselected package libjs-prettify. 611s Preparing to unpack .../090-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 611s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 612s Selecting previously unselected package libkpathsea6:arm64. 612s Preparing to unpack .../091-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 612s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 612s Selecting previously unselected package liblapack3:arm64. 612s Preparing to unpack .../092-liblapack3_3.12.0-3_arm64.deb ... 612s Unpacking liblapack3:arm64 (3.12.0-3) ... 613s Selecting previously unselected package liblapack-dev:arm64. 613s Preparing to unpack .../093-liblapack-dev_3.12.0-3_arm64.deb ... 613s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 614s Selecting previously unselected package liblerc4:arm64. 614s Preparing to unpack .../094-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 614s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 614s Selecting previously unselected package liblua5.4-0:arm64. 614s Preparing to unpack .../095-liblua5.4-0_5.4.6-3_arm64.deb ... 614s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 614s Selecting previously unselected package libncurses-dev:arm64. 614s Preparing to unpack .../096-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 614s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 615s Selecting previously unselected package libthai-data. 615s Preparing to unpack .../097-libthai-data_0.1.29-2_all.deb ... 615s Unpacking libthai-data (0.1.29-2) ... 615s Selecting previously unselected package libthai0:arm64. 615s Preparing to unpack .../098-libthai0_0.1.29-2_arm64.deb ... 615s Unpacking libthai0:arm64 (0.1.29-2) ... 615s Selecting previously unselected package libpango-1.0-0:arm64. 615s Preparing to unpack .../099-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 615s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 615s Selecting previously unselected package libpangoft2-1.0-0:arm64. 615s Preparing to unpack .../100-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 615s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 615s Selecting previously unselected package libpangocairo-1.0-0:arm64. 615s Preparing to unpack .../101-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 615s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 616s Selecting previously unselected package libpaper1:arm64. 616s Preparing to unpack .../102-libpaper1_1.1.29_arm64.deb ... 616s Unpacking libpaper1:arm64 (1.1.29) ... 616s Selecting previously unselected package libpaper-utils. 616s Preparing to unpack .../103-libpaper-utils_1.1.29_arm64.deb ... 616s Unpacking libpaper-utils (1.1.29) ... 616s Selecting previously unselected package libpcre2-16-0:arm64. 616s Preparing to unpack .../104-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 616s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 616s Selecting previously unselected package libpcre2-32-0:arm64. 616s Preparing to unpack .../105-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 616s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 616s Selecting previously unselected package libpcre2-posix3:arm64. 616s Preparing to unpack .../106-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 616s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 616s Selecting previously unselected package libpcre2-dev:arm64. 616s Preparing to unpack .../107-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 616s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 617s Selecting previously unselected package libpkgconf3:arm64. 617s Preparing to unpack .../108-libpkgconf3_1.8.1-2_arm64.deb ... 617s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 617s Selecting previously unselected package zlib1g-dev:arm64. 617s Preparing to unpack .../109-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 617s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 617s Selecting previously unselected package libpng-dev:arm64. 617s Preparing to unpack .../110-libpng-dev_1.6.43-1_arm64.deb ... 617s Unpacking libpng-dev:arm64 (1.6.43-1) ... 618s Selecting previously unselected package libpotrace0:arm64. 618s Preparing to unpack .../111-libpotrace0_1.16-2_arm64.deb ... 618s Unpacking libpotrace0:arm64 (1.16-2) ... 618s Selecting previously unselected package libptexenc1:arm64. 618s Preparing to unpack .../112-libptexenc1_2023.20230311.66589-9_arm64.deb ... 618s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 618s Selecting previously unselected package libreadline-dev:arm64. 618s Preparing to unpack .../113-libreadline-dev_8.2-3_arm64.deb ... 618s Unpacking libreadline-dev:arm64 (8.2-3) ... 618s Selecting previously unselected package libsharpyuv0:arm64. 618s Preparing to unpack .../114-libsharpyuv0_1.3.2-0.4_arm64.deb ... 618s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 618s Selecting previously unselected package libsm6:arm64. 618s Preparing to unpack .../115-libsm6_2%3a1.2.3-1build2_arm64.deb ... 618s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 618s Selecting previously unselected package libsynctex2:arm64. 618s Preparing to unpack .../116-libsynctex2_2023.20230311.66589-9_arm64.deb ... 618s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 618s Selecting previously unselected package libtcl8.6:arm64. 618s Preparing to unpack .../117-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 618s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 619s Selecting previously unselected package libteckit0:arm64. 619s Preparing to unpack .../118-libteckit0_2.5.12+ds1-1_arm64.deb ... 619s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 619s Selecting previously unselected package libtexlua53-5:arm64. 619s Preparing to unpack .../119-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 619s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 619s Selecting previously unselected package libjbig0:arm64. 619s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 619s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 619s Selecting previously unselected package libwebp7:arm64. 619s Preparing to unpack .../121-libwebp7_1.3.2-0.4_arm64.deb ... 619s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 619s Selecting previously unselected package libtiff6:arm64. 619s Preparing to unpack .../122-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 619s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 620s Selecting previously unselected package libxft2:arm64. 620s Preparing to unpack .../123-libxft2_2.3.6-1_arm64.deb ... 620s Unpacking libxft2:arm64 (2.3.6-1) ... 620s Selecting previously unselected package libxss1:arm64. 620s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build2_arm64.deb ... 620s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 620s Selecting previously unselected package libtk8.6:arm64. 620s Preparing to unpack .../125-libtk8.6_8.6.13-2_arm64.deb ... 620s Unpacking libtk8.6:arm64 (8.6.13-2) ... 620s Selecting previously unselected package libxt6:arm64. 620s Preparing to unpack .../126-libxt6_1%3a1.2.1-1.1_arm64.deb ... 620s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 620s Selecting previously unselected package libxmu6:arm64. 620s Preparing to unpack .../127-libxmu6_2%3a1.1.3-3_arm64.deb ... 620s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 620s Selecting previously unselected package libxpm4:arm64. 620s Preparing to unpack .../128-libxpm4_1%3a3.5.17-1_arm64.deb ... 620s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 621s Selecting previously unselected package libxaw7:arm64. 621s Preparing to unpack .../129-libxaw7_2%3a1.0.14-1_arm64.deb ... 621s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 621s Selecting previously unselected package libxi6:arm64. 621s Preparing to unpack .../130-libxi6_2%3a1.8.1-1_arm64.deb ... 621s Unpacking libxi6:arm64 (2:1.8.1-1) ... 621s Selecting previously unselected package libzzip-0-13:arm64. 621s Preparing to unpack .../131-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 621s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 621s Selecting previously unselected package node-bootstrap-sass. 621s Preparing to unpack .../132-node-bootstrap-sass_3.4.3-2_all.deb ... 621s Unpacking node-bootstrap-sass (3.4.3-2) ... 621s Selecting previously unselected package node-html5shiv. 621s Preparing to unpack .../133-node-html5shiv_3.7.3+dfsg-5_all.deb ... 621s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 621s Selecting previously unselected package node-normalize.css. 621s Preparing to unpack .../134-node-normalize.css_8.0.1-5_all.deb ... 621s Unpacking node-normalize.css (8.0.1-5) ... 622s Selecting previously unselected package pandoc-data. 622s Preparing to unpack .../135-pandoc-data_3.1.3-1_all.deb ... 622s Unpacking pandoc-data (3.1.3-1) ... 622s Selecting previously unselected package pandoc. 622s Preparing to unpack .../136-pandoc_3.1.3+ds-2_arm64.deb ... 622s Unpacking pandoc (3.1.3+ds-2) ... 627s Selecting previously unselected package pkgconf-bin. 627s Preparing to unpack .../137-pkgconf-bin_1.8.1-2_arm64.deb ... 627s Unpacking pkgconf-bin (1.8.1-2) ... 627s Selecting previously unselected package pkgconf:arm64. 627s Preparing to unpack .../138-pkgconf_1.8.1-2_arm64.deb ... 627s Unpacking pkgconf:arm64 (1.8.1-2) ... 627s Selecting previously unselected package pkg-config:arm64. 627s Preparing to unpack .../139-pkg-config_1.8.1-2_arm64.deb ... 627s Unpacking pkg-config:arm64 (1.8.1-2) ... 627s Selecting previously unselected package zip. 627s Preparing to unpack .../140-zip_3.0-13_arm64.deb ... 627s Unpacking zip (3.0-13) ... 628s Selecting previously unselected package unzip. 628s Preparing to unpack .../141-unzip_6.0-28ubuntu3_arm64.deb ... 628s Unpacking unzip (6.0-28ubuntu3) ... 628s Selecting previously unselected package xdg-utils. 628s Preparing to unpack .../142-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 628s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 628s Selecting previously unselected package r-base-core. 628s Preparing to unpack .../143-r-base-core_4.3.2-1build1_arm64.deb ... 628s Unpacking r-base-core (4.3.2-1build1) ... 631s Selecting previously unselected package liblzma-dev:arm64. 631s Preparing to unpack .../144-liblzma-dev_5.4.5-0.3_arm64.deb ... 631s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 631s Selecting previously unselected package r-base-dev. 631s Preparing to unpack .../145-r-base-dev_4.3.2-1build1_all.deb ... 631s Unpacking r-base-dev (4.3.2-1build1) ... 631s Selecting previously unselected package pkg-r-autopkgtest. 631s Preparing to unpack .../146-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 631s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 631s Selecting previously unselected package r-bioc-biocgenerics. 631s Preparing to unpack .../147-r-bioc-biocgenerics_0.48.1-2_all.deb ... 631s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 631s Selecting previously unselected package r-bioc-biobase. 631s Preparing to unpack .../148-r-bioc-biobase_2.62.0-1_arm64.deb ... 631s Unpacking r-bioc-biobase (2.62.0-1) ... 632s Selecting previously unselected package r-bioc-s4vectors. 632s Preparing to unpack .../149-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 632s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 632s Selecting previously unselected package r-bioc-iranges. 632s Preparing to unpack .../150-r-bioc-iranges_2.36.0-1_arm64.deb ... 632s Unpacking r-bioc-iranges (2.36.0-1) ... 632s Selecting previously unselected package r-cran-dbi. 632s Preparing to unpack .../151-r-cran-dbi_1.2.2-1_all.deb ... 632s Unpacking r-cran-dbi (1.2.2-1) ... 632s Selecting previously unselected package r-cran-bit. 632s Preparing to unpack .../152-r-cran-bit_4.0.5-1_arm64.deb ... 632s Unpacking r-cran-bit (4.0.5-1) ... 633s Selecting previously unselected package r-cran-bit64. 633s Preparing to unpack .../153-r-cran-bit64_4.0.5-1_arm64.deb ... 633s Unpacking r-cran-bit64 (4.0.5-1) ... 633s Selecting previously unselected package r-cran-rlang. 633s Preparing to unpack .../154-r-cran-rlang_1.1.3-1_arm64.deb ... 633s Unpacking r-cran-rlang (1.1.3-1) ... 633s Selecting previously unselected package r-cran-cli. 633s Preparing to unpack .../155-r-cran-cli_3.6.2-1_arm64.deb ... 633s Unpacking r-cran-cli (3.6.2-1) ... 634s Selecting previously unselected package r-cran-glue. 634s Preparing to unpack .../156-r-cran-glue_1.7.0-1_arm64.deb ... 634s Unpacking r-cran-glue (1.7.0-1) ... 634s Selecting previously unselected package r-cran-lifecycle. 634s Preparing to unpack .../157-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 634s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 634s Selecting previously unselected package r-cran-vctrs. 634s Preparing to unpack .../158-r-cran-vctrs_0.6.5-1_arm64.deb ... 634s Unpacking r-cran-vctrs (0.6.5-1) ... 634s Selecting previously unselected package r-cran-blob. 634s Preparing to unpack .../159-r-cran-blob_1.2.4-1_all.deb ... 634s Unpacking r-cran-blob (1.2.4-1) ... 634s Selecting previously unselected package r-cran-fastmap. 634s Preparing to unpack .../160-r-cran-fastmap_1.1.1-1_arm64.deb ... 634s Unpacking r-cran-fastmap (1.1.1-1) ... 635s Selecting previously unselected package r-cran-cachem. 635s Preparing to unpack .../161-r-cran-cachem_1.0.8-1_arm64.deb ... 635s Unpacking r-cran-cachem (1.0.8-1) ... 635s Selecting previously unselected package r-cran-memoise. 635s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ... 635s Unpacking r-cran-memoise (2.0.1-1) ... 635s Selecting previously unselected package r-cran-pkgconfig. 635s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 635s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 635s Selecting previously unselected package r-cran-plogr. 635s Preparing to unpack .../164-r-cran-plogr_0.2.0-3build1_all.deb ... 635s Unpacking r-cran-plogr (0.2.0-3build1) ... 635s Selecting previously unselected package r-cran-cpp11. 635s Preparing to unpack .../165-r-cran-cpp11_0.4.7-1_all.deb ... 635s Unpacking r-cran-cpp11 (0.4.7-1) ... 636s Selecting previously unselected package r-cran-rsqlite. 636s Preparing to unpack .../166-r-cran-rsqlite_2.3.4-1_arm64.deb ... 636s Unpacking r-cran-rsqlite (2.3.4-1) ... 636s Selecting previously unselected package r-cran-curl. 636s Preparing to unpack .../167-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 636s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 636s Selecting previously unselected package r-cran-jsonlite. 636s Preparing to unpack .../168-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 636s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 636s Selecting previously unselected package r-cran-mime. 636s Preparing to unpack .../169-r-cran-mime_0.12-1_arm64.deb ... 636s Unpacking r-cran-mime (0.12-1) ... 637s Selecting previously unselected package r-cran-sys. 637s Preparing to unpack .../170-r-cran-sys_3.4.2-1_arm64.deb ... 637s Unpacking r-cran-sys (3.4.2-1) ... 637s Selecting previously unselected package r-cran-askpass. 637s Preparing to unpack .../171-r-cran-askpass_1.2.0-1_arm64.deb ... 637s Unpacking r-cran-askpass (1.2.0-1) ... 637s Selecting previously unselected package r-cran-openssl. 637s Preparing to unpack .../172-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 637s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 637s Selecting previously unselected package r-cran-r6. 637s Preparing to unpack .../173-r-cran-r6_2.5.1-1_all.deb ... 637s Unpacking r-cran-r6 (2.5.1-1) ... 637s Selecting previously unselected package r-cran-httr. 637s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ... 637s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 638s Selecting previously unselected package r-cran-png. 638s Preparing to unpack .../175-r-cran-png_0.1-8-1_arm64.deb ... 638s Unpacking r-cran-png (0.1-8-1) ... 638s Selecting previously unselected package r-bioc-zlibbioc. 638s Preparing to unpack .../176-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 638s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 638s Selecting previously unselected package r-bioc-xvector. 638s Preparing to unpack .../177-r-bioc-xvector_0.42.0-1_arm64.deb ... 638s Unpacking r-bioc-xvector (0.42.0-1) ... 638s Selecting previously unselected package r-cran-bitops. 638s Preparing to unpack .../178-r-cran-bitops_1.0-7-1_arm64.deb ... 638s Unpacking r-cran-bitops (1.0-7-1) ... 638s Selecting previously unselected package r-cran-rcurl. 638s Preparing to unpack .../179-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 638s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 638s Selecting previously unselected package r-bioc-genomeinfodbdata. 638s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 638s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 639s Selecting previously unselected package r-bioc-genomeinfodb. 639s Preparing to unpack .../181-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 639s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 639s Selecting previously unselected package r-cran-crayon. 639s Preparing to unpack .../182-r-cran-crayon_1.5.2-1_all.deb ... 639s Unpacking r-cran-crayon (1.5.2-1) ... 639s Selecting previously unselected package r-bioc-biostrings. 640s Preparing to unpack .../183-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 640s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 640s Selecting previously unselected package r-bioc-keggrest. 640s Preparing to unpack .../184-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 640s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 640s Selecting previously unselected package r-bioc-annotationdbi. 640s Preparing to unpack .../185-r-bioc-annotationdbi_1.64.1-1_all.deb ... 640s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 641s Selecting previously unselected package r-cran-generics. 641s Preparing to unpack .../186-r-cran-generics_0.1.3-1_all.deb ... 641s Unpacking r-cran-generics (0.1.3-1) ... 641s Selecting previously unselected package r-cran-magrittr. 641s Preparing to unpack .../187-r-cran-magrittr_2.0.3-1_arm64.deb ... 641s Unpacking r-cran-magrittr (2.0.3-1) ... 641s Selecting previously unselected package r-cran-fansi. 641s Preparing to unpack .../188-r-cran-fansi_1.0.5-1_arm64.deb ... 641s Unpacking r-cran-fansi (1.0.5-1) ... 641s Selecting previously unselected package r-cran-utf8. 641s Preparing to unpack .../189-r-cran-utf8_1.2.4-1_arm64.deb ... 641s Unpacking r-cran-utf8 (1.2.4-1) ... 641s Selecting previously unselected package r-cran-pillar. 642s Preparing to unpack .../190-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 642s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 642s Selecting previously unselected package r-cran-tibble. 642s Preparing to unpack .../191-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 642s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 642s Selecting previously unselected package r-cran-withr. 642s Preparing to unpack .../192-r-cran-withr_2.5.0-1_all.deb ... 642s Unpacking r-cran-withr (2.5.0-1) ... 642s Selecting previously unselected package r-cran-tidyselect. 642s Preparing to unpack .../193-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 642s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 642s Selecting previously unselected package r-cran-dplyr. 642s Preparing to unpack .../194-r-cran-dplyr_1.1.4-1_arm64.deb ... 642s Unpacking r-cran-dplyr (1.1.4-1) ... 643s Selecting previously unselected package r-cran-purrr. 643s Preparing to unpack .../195-r-cran-purrr_1.0.2-1_arm64.deb ... 643s Unpacking r-cran-purrr (1.0.2-1) ... 643s Selecting previously unselected package r-cran-stringi. 643s Preparing to unpack .../196-r-cran-stringi_1.8.3-1_arm64.deb ... 643s Unpacking r-cran-stringi (1.8.3-1) ... 643s Selecting previously unselected package r-cran-stringr. 643s Preparing to unpack .../197-r-cran-stringr_1.5.1-1_all.deb ... 643s Unpacking r-cran-stringr (1.5.1-1) ... 644s Selecting previously unselected package r-cran-tidyr. 644s Preparing to unpack .../198-r-cran-tidyr_1.3.1-1_arm64.deb ... 644s Unpacking r-cran-tidyr (1.3.1-1) ... 644s Selecting previously unselected package r-cran-dbplyr. 644s Preparing to unpack .../199-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 644s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 644s Selecting previously unselected package r-cran-filelock. 644s Preparing to unpack .../200-r-cran-filelock_1.0.3-1_arm64.deb ... 644s Unpacking r-cran-filelock (1.0.3-1) ... 644s Selecting previously unselected package r-bioc-biocfilecache. 644s Preparing to unpack .../201-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 644s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 645s Selecting previously unselected package r-bioc-biocio. 645s Preparing to unpack .../202-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 645s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 645s Selecting previously unselected package r-cran-formatr. 645s Preparing to unpack .../203-r-cran-formatr_1.14-1_all.deb ... 645s Unpacking r-cran-formatr (1.14-1) ... 645s Selecting previously unselected package r-cran-lambda.r. 645s Preparing to unpack .../204-r-cran-lambda.r_1.2.4-2build1_all.deb ... 645s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 645s Selecting previously unselected package r-cran-futile.options. 645s Preparing to unpack .../205-r-cran-futile.options_1.0.1-3build1_all.deb ... 645s Unpacking r-cran-futile.options (1.0.1-3build1) ... 645s Selecting previously unselected package r-cran-futile.logger. 646s Preparing to unpack .../206-r-cran-futile.logger_1.4.3-4build1_all.deb ... 646s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 646s Selecting previously unselected package r-cran-snow. 646s Preparing to unpack .../207-r-cran-snow_1%3a0.4.4-2_all.deb ... 646s Unpacking r-cran-snow (1:0.4.4-2) ... 646s Selecting previously unselected package r-cran-codetools. 646s Preparing to unpack .../208-r-cran-codetools_0.2-19-1_all.deb ... 646s Unpacking r-cran-codetools (0.2-19-1) ... 646s Selecting previously unselected package r-cran-bh. 646s Preparing to unpack .../209-r-cran-bh_1.84.0-1_all.deb ... 646s Unpacking r-cran-bh (1.84.0-1) ... 646s Selecting previously unselected package r-bioc-biocparallel. 646s Preparing to unpack .../210-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 646s Unpacking r-bioc-biocparallel (1.36.0-1) ... 646s Selecting previously unselected package r-cran-base64enc. 646s Preparing to unpack .../211-r-cran-base64enc_0.1-3-3_arm64.deb ... 646s Unpacking r-cran-base64enc (0.1-3-3) ... 646s Selecting previously unselected package r-cran-digest. 647s Preparing to unpack .../212-r-cran-digest_0.6.34-1_arm64.deb ... 647s Unpacking r-cran-digest (0.6.34-1) ... 647s Selecting previously unselected package r-cran-ellipsis. 647s Preparing to unpack .../213-r-cran-ellipsis_0.3.2-2_arm64.deb ... 647s Unpacking r-cran-ellipsis (0.3.2-2) ... 647s Selecting previously unselected package r-cran-htmltools. 647s Preparing to unpack .../214-r-cran-htmltools_0.5.7-1_arm64.deb ... 647s Unpacking r-cran-htmltools (0.5.7-1) ... 647s Selecting previously unselected package r-cran-evaluate. 647s Preparing to unpack .../215-r-cran-evaluate_0.23-1_all.deb ... 647s Unpacking r-cran-evaluate (0.23-1) ... 647s Selecting previously unselected package r-cran-xfun. 647s Preparing to unpack .../216-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 647s Unpacking r-cran-xfun (0.41+dfsg-1) ... 648s Selecting previously unselected package r-cran-highr. 648s Preparing to unpack .../217-r-cran-highr_0.10+dfsg-1_all.deb ... 648s Unpacking r-cran-highr (0.10+dfsg-1) ... 648s Selecting previously unselected package r-cran-yaml. 648s Preparing to unpack .../218-r-cran-yaml_2.3.8-1_arm64.deb ... 648s Unpacking r-cran-yaml (2.3.8-1) ... 648s Selecting previously unselected package libjs-mathjax. 648s Preparing to unpack .../219-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 648s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 654s Selecting previously unselected package r-cran-knitr. 654s Preparing to unpack .../220-r-cran-knitr_1.45+dfsg-1_all.deb ... 654s Unpacking r-cran-knitr (1.45+dfsg-1) ... 654s Selecting previously unselected package r-cran-jquerylib. 654s Preparing to unpack .../221-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 654s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 654s Selecting previously unselected package r-cran-fs. 655s Preparing to unpack .../222-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 655s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 655s Selecting previously unselected package r-cran-rappdirs. 655s Preparing to unpack .../223-r-cran-rappdirs_0.3.3-1_arm64.deb ... 655s Unpacking r-cran-rappdirs (0.3.3-1) ... 655s Selecting previously unselected package r-cran-sass. 655s Preparing to unpack .../224-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 655s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 655s Selecting previously unselected package r-cran-bslib. 655s Preparing to unpack .../225-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 655s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 656s Selecting previously unselected package r-cran-fontawesome. 656s Preparing to unpack .../226-r-cran-fontawesome_0.5.2-1_all.deb ... 656s Unpacking r-cran-fontawesome (0.5.2-1) ... 657s Selecting previously unselected package r-cran-tinytex. 657s Preparing to unpack .../227-r-cran-tinytex_0.49-1_all.deb ... 657s Unpacking r-cran-tinytex (0.49-1) ... 657s Selecting previously unselected package libjs-modernizr. 657s Preparing to unpack .../228-libjs-modernizr_2.6.2+ds1-5_all.deb ... 657s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 657s Selecting previously unselected package r-cran-littler. 657s Preparing to unpack .../229-r-cran-littler_0.3.19-1_arm64.deb ... 657s Unpacking r-cran-littler (0.3.19-1) ... 657s Selecting previously unselected package r-cran-pkgkitten. 657s Preparing to unpack .../230-r-cran-pkgkitten_0.2.3-1_all.deb ... 657s Unpacking r-cran-pkgkitten (0.2.3-1) ... 657s Selecting previously unselected package r-cran-rcpp. 658s Preparing to unpack .../231-r-cran-rcpp_1.0.12-1_arm64.deb ... 658s Unpacking r-cran-rcpp (1.0.12-1) ... 658s Selecting previously unselected package r-cran-later. 658s Preparing to unpack .../232-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 658s Unpacking r-cran-later (1.3.2+dfsg-1) ... 659s Selecting previously unselected package r-cran-promises. 659s Preparing to unpack .../233-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 659s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 659s Selecting previously unselected package r-cran-httpuv. 659s Preparing to unpack .../234-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 659s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 659s Selecting previously unselected package r-cran-xtable. 659s Preparing to unpack .../235-r-cran-xtable_1%3a1.8-4-2_all.deb ... 659s Unpacking r-cran-xtable (1:1.8-4-2) ... 659s Selecting previously unselected package r-cran-sourcetools. 659s Preparing to unpack .../236-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 659s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 659s Selecting previously unselected package r-cran-commonmark. 660s Preparing to unpack .../237-r-cran-commonmark_1.9.1-1_arm64.deb ... 660s Unpacking r-cran-commonmark (1.9.1-1) ... 660s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 660s Preparing to unpack .../238-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 660s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 660s Selecting previously unselected package r-cran-shiny. 660s Preparing to unpack .../239-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 660s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 661s Selecting previously unselected package r-cran-rmarkdown. 661s Preparing to unpack .../240-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 661s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 661s Selecting previously unselected package r-cran-bookdown. 661s Preparing to unpack .../241-r-cran-bookdown_0.37+dfsg-1_all.deb ... 661s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 662s Selecting previously unselected package r-cran-biocmanager. 662s Preparing to unpack .../242-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 662s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 662s Selecting previously unselected package tex-common. 662s Preparing to unpack .../243-tex-common_6.18_all.deb ... 662s Unpacking tex-common (6.18) ... 662s Selecting previously unselected package t1utils. 662s Preparing to unpack .../244-t1utils_1.41-4build2_arm64.deb ... 662s Unpacking t1utils (1.41-4build2) ... 662s Selecting previously unselected package texlive-binaries. 662s Preparing to unpack .../245-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 662s Unpacking texlive-binaries (2023.20230311.66589-9) ... 665s Selecting previously unselected package texlive-base. 665s Preparing to unpack .../246-texlive-base_2023.20240207-1_all.deb ... 665s Unpacking texlive-base (2023.20240207-1) ... 671s Selecting previously unselected package texlive-latex-base. 671s Preparing to unpack .../247-texlive-latex-base_2023.20240207-1_all.deb ... 671s Unpacking texlive-latex-base (2023.20240207-1) ... 673s Selecting previously unselected package texlive-bibtex-extra. 673s Preparing to unpack .../248-texlive-bibtex-extra_2023.20240207-1_all.deb ... 673s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 692s Selecting previously unselected package r-bioc-biocstyle. 692s Preparing to unpack .../249-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 692s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 692s Selecting previously unselected package r-cran-xml. 692s Preparing to unpack .../250-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 692s Unpacking r-cran-xml (3.99-0.16.1-1) ... 693s Selecting previously unselected package r-cran-hms. 693s Preparing to unpack .../251-r-cran-hms_1.1.3-1_all.deb ... 693s Unpacking r-cran-hms (1.1.3-1) ... 693s Selecting previously unselected package r-cran-prettyunits. 693s Preparing to unpack .../252-r-cran-prettyunits_1.2.0-1_all.deb ... 693s Unpacking r-cran-prettyunits (1.2.0-1) ... 693s Selecting previously unselected package r-cran-progress. 693s Preparing to unpack .../253-r-cran-progress_1.2.3-1_all.deb ... 693s Unpacking r-cran-progress (1.2.3-1) ... 693s Selecting previously unselected package r-cran-xml2. 693s Preparing to unpack .../254-r-cran-xml2_1.3.6-1_arm64.deb ... 693s Unpacking r-cran-xml2 (1.3.6-1) ... 694s Selecting previously unselected package r-bioc-biomart. 694s Preparing to unpack .../255-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 694s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 694s Selecting previously unselected package r-bioc-genomicranges. 694s Preparing to unpack .../256-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 694s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 694s Selecting previously unselected package r-bioc-rhtslib. 694s Preparing to unpack .../257-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 694s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 695s Selecting previously unselected package r-bioc-rsamtools. 695s Preparing to unpack .../258-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 695s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 695s Selecting previously unselected package r-cran-matrixstats. 695s Preparing to unpack .../259-r-cran-matrixstats_1.2.0-1_arm64.deb ... 695s Unpacking r-cran-matrixstats (1.2.0-1) ... 695s Selecting previously unselected package r-bioc-matrixgenerics. 695s Preparing to unpack .../260-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 695s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 696s Selecting previously unselected package r-cran-lattice. 696s Preparing to unpack .../261-r-cran-lattice_0.22-5-1_arm64.deb ... 696s Unpacking r-cran-lattice (0.22-5-1) ... 696s Selecting previously unselected package r-cran-matrix. 696s Preparing to unpack .../262-r-cran-matrix_1.6-5-1_arm64.deb ... 696s Unpacking r-cran-matrix (1.6-5-1) ... 696s Selecting previously unselected package r-cran-abind. 697s Preparing to unpack .../263-r-cran-abind_1.4-5-2_all.deb ... 697s Unpacking r-cran-abind (1.4-5-2) ... 697s Selecting previously unselected package r-bioc-s4arrays. 697s Preparing to unpack .../264-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 697s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 697s Selecting previously unselected package r-bioc-sparsearray. 697s Preparing to unpack .../265-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 697s Unpacking 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r-cran-restfulr (0.0.15-1) ... 698s Selecting previously unselected package r-bioc-rtracklayer. 698s Preparing to unpack .../271-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 698s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 699s Selecting previously unselected package r-bioc-bsgenome. 699s Preparing to unpack .../272-r-bioc-bsgenome_1.70.2-1_all.deb ... 699s Unpacking r-bioc-bsgenome (1.70.2-1) ... 699s Selecting previously unselected package r-bioc-genomicfeatures. 700s Preparing to unpack .../273-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 700s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 700s Selecting previously unselected package r-cran-data.table. 700s Preparing to unpack .../274-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 700s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 700s Selecting previously unselected package r-cran-r.methodss3. 700s Preparing to unpack .../275-r-cran-r.methodss3_1.8.2-1_all.deb ... 700s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 700s 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709s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 709s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 709s Setting up t1utils (1.41-4build2) ... 709s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 709s Setting up libjs-d3 (3.5.17-4) ... 709s Setting up fonts-dejavu-mono (2.37-8) ... 709s Setting up libmpc3:arm64 (1.3.1-1) ... 709s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 709s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 709s Setting up icu-devtools (74.2-1ubuntu1) ... 709s Setting up fonts-dejavu-core (2.37-8) ... 709s Setting up pkgconf-bin (1.8.1-2) ... 709s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 709s Setting up libkpathsea6:arm64 (2023.20230311.66589-9) ... 709s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 709s Setting up libwebp7:arm64 (1.3.2-0.4) ... 709s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 709s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 709s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 709s Setting 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update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 710s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 710s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 711s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 711s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 711s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 711s Setting up pkgconf:arm64 (1.8.1-2) ... 711s Setting up libthai0:arm64 (0.1.29-2) ... 711s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 711s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 711s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 711s Setting up pandoc (3.1.3+ds-2) ... 711s Setting up liblapack-dev:arm64 (3.12.0-3) ... 711s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 711s Setting up pkg-config:arm64 (1.8.1-2) ... 711s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 711s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 711s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 711s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 711s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 711s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 711s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 711s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 711s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 711s Setting up fontconfig (2.15.0-1ubuntu1) ... 714s Regenerating fonts cache... done. 714s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 714s Setting up libxft2:arm64 (2.3.6-1) ... 714s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 714s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 714s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 714s Setting up cpp-13 (13.2.0-17ubuntu2) ... 714s Setting up libtk8.6:arm64 (8.6.13-2) ... 714s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 714s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 714s Setting up libreadline-dev:arm64 (8.2-3) ... 714s Setting up libcairo2:arm64 (1.18.0-1) ... 714s Setting up gcc-13 (13.2.0-17ubuntu2) ... 714s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 714s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 714s Setting up cpp (4:13.2.0-7ubuntu1) ... 714s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 714s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 714s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 714s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 714s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 714s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 714s Setting up g++-13 (13.2.0-17ubuntu2) ... 714s Setting up libxmu6:arm64 (2:1.1.3-3) ... 714s Setting up libpng-dev:arm64 (1.6.43-1) ... 714s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 714s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 714s Setting up libxaw7:arm64 (2:1.0.14-1) ... 714s Setting up gcc (4:13.2.0-7ubuntu1) ... 714s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 714s Setting up r-base-core (4.3.2-1build1) ... 715s 715s Creating config file /etc/R/Renviron with new version 716s Setting up r-cran-crayon (1.5.2-1) ... 716s Setting up r-cran-sourcetools (0.1.7-1-1) ... 716s Setting up r-cran-futile.options (1.0.1-3build1) ... 716s Setting up r-cran-lattice (0.22-5-1) ... 716s Setting up r-cran-formatr (1.14-1) ... 716s Setting up r-cran-xml (3.99-0.16.1-1) ... 716s Setting up texlive-binaries (2023.20230311.66589-9) ... 716s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 716s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 716s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 716s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 716s Setting up r-cran-commonmark (1.9.1-1) ... 716s Setting up r-cran-r6 (2.5.1-1) ... 716s Setting up r-cran-pkgkitten (0.2.3-1) ... 716s Setting up texlive-base (2023.20240207-1) ... 719s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 720s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 721s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 722s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 725s Setting up r-cran-magrittr (2.0.3-1) ... 725s Setting up r-cran-rappdirs (0.3.3-1) ... 725s Setting up r-cran-filelock (1.0.3-1) ... 725s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 725s Setting up r-cran-littler (0.3.19-1) ... 725s Setting up r-cran-bh (1.84.0-1) ... 725s Setting up r-cran-fs (1.6.3+dfsg-1) ... 725s Setting up r-cran-rcpp (1.0.12-1) ... 725s Setting up r-cran-curl (5.2.0+dfsg-1) ... 725s Setting up r-cran-codetools (0.2-19-1) ... 725s Setting up r-bioc-biocgenerics (0.48.1-2) ... 725s Setting up r-cran-rlang (1.1.3-1) ... 725s Setting up r-cran-matrixstats (1.2.0-1) ... 725s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 725s Setting up r-cran-xfun (0.41+dfsg-1) ... 725s Setting up r-cran-sys (3.4.2-1) ... 725s Setting up r-cran-plogr (0.2.0-3build1) ... 725s Setting up r-cran-withr (2.5.0-1) ... 725s Setting up r-cran-mime (0.12-1) ... 725s Setting up r-cran-generics (0.1.3-1) ... 725s Setting up r-cran-base64enc (0.1-3-3) ... 725s Setting up r-cran-abind (1.4-5-2) ... 725s Setting up r-cran-digest (0.6.34-1) ... 725s Setting up r-cran-yaml (2.3.8-1) ... 725s Setting up r-cran-lambda.r (1.2.4-2build1) ... 725s Setting up r-cran-evaluate (0.23-1) ... 725s Setting up r-cran-dbi (1.2.2-1) ... 725s Setting up r-cran-highr (0.10+dfsg-1) ... 725s Setting up r-cran-prettyunits (1.2.0-1) ... 725s Setting up r-cran-fansi (1.0.5-1) ... 725s Setting up r-cran-snow (1:0.4.4-2) ... 725s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 725s Setting up r-cran-glue (1.7.0-1) ... 725s Setting up r-cran-bit (4.0.5-1) ... 725s Setting up r-cran-xtable (1:1.8-4-2) ... 725s Setting up r-cran-cli (3.6.2-1) ... 725s Setting up gfortran (4:13.2.0-7ubuntu1) ... 725s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 725s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 725s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 725s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 725s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 725s Setting up r-cran-bitops (1.0-7-1) ... 725s Setting up r-cran-bit64 (4.0.5-1) ... 725s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 725s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 725s Setting up r-cran-askpass (1.2.0-1) ... 725s Setting up r-cran-fastmap (1.1.1-1) ... 725s Setting up r-cran-png (0.1-8-1) ... 725s Setting up r-cran-r.methodss3 (1.8.2-1) ... 725s Setting up r-bioc-biobase (2.62.0-1) ... 725s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 725s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 725s Setting up r-cran-utf8 (1.2.4-1) ... 725s Setting up r-cran-stringi (1.8.3-1) ... 725s Setting up texlive-latex-base (2023.20240207-1) ... 725s Setting up r-cran-cpp11 (0.4.7-1) ... 725s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 725s Setting up r-cran-runit (0.4.32-3) ... 725s Setting up r-cran-futile.logger (1.4.3-4build1) ... 725s Setting up r-cran-later (1.3.2+dfsg-1) ... 725s Setting up r-cran-matrix (1.6-5-1) ... 725s Setting up r-cran-tinytex (0.49-1) ... 725s Setting up r-cran-knitr (1.45+dfsg-1) ... 725s Setting up g++ (4:13.2.0-7ubuntu1) ... 725s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 725s Setting up r-cran-cachem (1.0.8-1) ... 725s Setting up build-essential (12.10ubuntu1) ... 725s Setting up r-bioc-iranges (2.36.0-1) ... 725s Setting up r-cran-rjson (0.2.21-1) ... 725s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 725s Setting up r-cran-restfulr (0.0.15-1) ... 725s Setting up r-cran-vctrs (0.6.5-1) ... 725s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 725s Setting up r-cran-ellipsis (0.3.2-2) ... 725s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 725s Setting up r-base-dev (4.3.2-1build1) ... 725s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 725s Setting up r-cran-stringr (1.5.1-1) ... 725s Setting up r-bioc-biocparallel (1.36.0-1) ... 725s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 725s Setting up r-cran-xml2 (1.3.6-1) ... 725s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 725s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 725s Setting up r-cran-r.oo (1.26.0-1) ... 725s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 725s Setting up texlive-bibtex-extra (2023.20240207-1) ... 725s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 725s Setting up r-cran-httr (1.4.7+dfsg-1) ... 725s Setting up r-cran-hms (1.1.3-1) ... 725s Setting up r-cran-memoise (2.0.1-1) ... 725s Setting up r-cran-promises (1.2.1+dfsg-1) ... 725s Setting up r-cran-purrr (1.0.2-1) ... 725s Setting up r-cran-blob (1.2.4-1) ... 725s Setting up r-cran-htmltools (0.5.7-1) ... 725s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 725s Setting up r-bioc-xvector (0.42.0-1) ... 725s Setting up r-cran-sass (0.4.8+dfsg-1) ... 725s Setting up r-cran-dplyr (1.1.4-1) ... 725s Setting up r-cran-rsqlite (2.3.4-1) ... 725s Setting up r-cran-progress (1.2.3-1) ... 725s Setting up r-cran-r.utils (2.12.3-1) ... 725s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 725s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 726s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 726s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 726s Setting up r-cran-fontawesome (0.5.2-1) ... 726s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 726s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 726s Setting up r-cran-tidyr (1.3.1-1) ... 726s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 726s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 726s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 726s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 726s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 726s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 726s Setting up r-bioc-annotationdbi (1.64.1-1) ... 726s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 726s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 726s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 726s Setting up r-bioc-genomicalignments (1.38.2-1) ... 726s Setting up r-cran-bookdown (0.37+dfsg-1) ... 726s Setting up r-bioc-rtracklayer (1.62.0-1) ... 726s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 726s Setting up r-bioc-bsgenome (1.70.2-1) ... 726s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 726s Setting up autopkgtest-satdep (0) ... 726s Processing triggers for man-db (2.12.0-3) ... 731s Processing triggers for install-info (7.1-3) ... 731s Processing triggers for libc-bin (2.39-0ubuntu2) ... 731s Processing triggers for tex-common (6.18) ... 733s Running updmap-sys. This may take some time... done. 733s Running mktexlsr /var/lib/texmf ... done. 734s Building format(s) --all. 901s This may take some time... done. 963s (Reading database ... 125131 files and directories currently installed.) 963s Removing autopkgtest-satdep (0) ... 965s autopkgtest [14:10:02]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 965s autopkgtest [14:10:02]: test pkg-r-autopkgtest: [----------------------- 966s Test: Try to load the R library GenomeInfoDb 967s 967s R version 4.3.2 (2023-10-31) -- "Eye Holes" 967s Copyright (C) 2023 The R Foundation for Statistical Computing 967s Platform: aarch64-unknown-linux-gnu (64-bit) 967s 967s R is free software and comes with ABSOLUTELY NO WARRANTY. 967s You are welcome to redistribute it under certain conditions. 967s Type 'license()' or 'licence()' for distribution details. 967s 967s R is a collaborative project with many contributors. 967s Type 'contributors()' for more information and 967s 'citation()' on how to cite R or R packages in publications. 967s 967s Type 'demo()' for some demos, 'help()' for on-line help, or 967s 'help.start()' for an HTML browser interface to help. 967s Type 'q()' to quit R. 967s 967s > library('GenomeInfoDb') 967s Loading required package: BiocGenerics 969s 969s Attaching package: ‘BiocGenerics’ 969s 969s The following objects are masked from ‘package:stats’: 969s 969s IQR, mad, sd, var, xtabs 969s 969s The following objects are masked from ‘package:base’: 969s 969s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 969s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 969s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 969s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 969s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 969s table, tapply, union, unique, unsplit, which.max, which.min 969s 969s Loading required package: S4Vectors 969s Loading required package: stats4 974s 974s Attaching package: ‘S4Vectors’ 974s 974s The following object is masked from ‘package:utils’: 974s 974s findMatches 974s 974s The following objects are masked from ‘package:base’: 974s 974s expand.grid, I, unname 974s 974s Loading required package: IRanges 982s > 982s > 982s Other tests are currently unsupported! 982s They will be progressively added. 983s autopkgtest [14:10:20]: test pkg-r-autopkgtest: -----------------------] 984s pkg-r-autopkgtest PASS 984s autopkgtest [14:10:21]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 985s autopkgtest [14:10:22]: @@@@@@@@@@@@@@@@@@@@ summary 985s pkg-r-autopkgtest PASS 1009s Creating nova instance adt-noble-arm64-r-bioc-genomeinfodb-20240316-135357-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...