0s autopkgtest [17:29:36]: starting date and time: 2024-03-16 17:29:36+0000 0s autopkgtest [17:29:36]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:29:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xukhzxau/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-experimenthub --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-15.secgroup --name adt-noble-arm64-r-bioc-experimenthub-20240316-172935-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 132s autopkgtest [17:31:48]: testbed dpkg architecture: arm64 132s autopkgtest [17:31:48]: testbed apt version: 2.7.12 132s autopkgtest [17:31:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 132s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 133s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 133s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 133s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 133s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 133s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 133s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 133s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 133s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 133s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 133s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 133s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 133s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 135s Fetched 9060 kB in 2s (5102 kB/s) 135s Reading package lists... 138s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s Calculating upgrade... 140s The following packages will be REMOVED: 140s libglib2.0-0 libssl3 140s The following NEW packages will be installed: 140s libglib2.0-0t64 libssl3t64 xdg-user-dirs 140s The following packages have been kept back: 140s curl 140s The following packages will be upgraded: 140s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 140s ubuntu-minimal ubuntu-standard 140s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 140s Need to get 4613 kB of archives. 140s After this operation, 211 kB of additional disk space will be used. 140s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 140s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 141s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 141s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 141s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 141s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 141s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 141s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 141s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 141s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 142s Fetched 4613 kB in 1s (5451 kB/s) 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 142s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 142s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 142s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 142s udisks2 depends on libglib2.0-0 (>= 2.77.0). 142s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 142s python3-gi depends on libglib2.0-0 (>= 2.77.0). 142s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 142s netplan.io depends on libglib2.0-0 (>= 2.70.0). 142s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 142s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 142s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 142s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 142s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 142s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 142s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 142s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 142s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 142s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 142s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 142s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 142s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 142s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 142s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 142s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 142s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 142s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 142s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 142s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 142s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s fwupd depends on libglib2.0-0 (>= 2.79.0). 142s bolt depends on libglib2.0-0 (>= 2.56.0). 142s 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 142s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 142s Selecting previously unselected package libglib2.0-0t64:arm64. 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 142s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 143s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 143s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 143s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 143s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 143s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 143s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 143s wget depends on libssl3 (>= 3.0.0). 143s u-boot-tools depends on libssl3 (>= 3.0.0). 143s tnftp depends on libssl3 (>= 3.0.0). 143s tcpdump depends on libssl3 (>= 3.0.0). 143s systemd-resolved depends on libssl3 (>= 3.0.0). 143s systemd depends on libssl3 (>= 3.0.0). 143s sudo depends on libssl3 (>= 3.0.0). 143s sbsigntool depends on libssl3 (>= 3.0.0). 143s rsync depends on libssl3 (>= 3.0.0). 143s python3-cryptography depends on libssl3 (>= 3.0.0). 143s openssh-server depends on libssl3 (>= 3.0.10). 143s openssh-client depends on libssl3 (>= 3.0.10). 143s mtd-utils depends on libssl3 (>= 3.0.0). 143s mokutil depends on libssl3 (>= 3.0.0). 143s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 143s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 143s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 143s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 143s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 143s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 143s libnvme1 depends on libssl3 (>= 3.0.0). 143s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 143s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 143s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 143s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 143s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 143s kmod depends on libssl3 (>= 3.0.0). 143s dhcpcd-base depends on libssl3 (>= 3.0.0). 143s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 143s 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 143s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 143s Selecting previously unselected package libssl3t64:arm64. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 143s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 143s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 143s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 143s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 143s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 143s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 143s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 143s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 143s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 143s Unpacking ubuntu-minimal (1.536) over (1.535) ... 143s Selecting previously unselected package xdg-user-dirs. 143s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 143s Unpacking xdg-user-dirs (0.18-1) ... 143s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 143s Unpacking ubuntu-standard (1.536) over (1.535) ... 144s Setting up ubuntu-minimal (1.536) ... 144s Setting up xdg-user-dirs (0.18-1) ... 144s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 144s Setting up libtirpc-common (1.3.4+ds-1.1) ... 144s Setting up ubuntu-standard (1.536) ... 144s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 144s No schema files found: doing nothing. 144s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 144s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 144s Setting up openssl (3.0.13-0ubuntu1) ... 144s Setting up readline-common (8.2-3.1) ... 144s Processing triggers for man-db (2.12.0-3) ... 145s Processing triggers for install-info (7.1-3) ... 145s Processing triggers for libc-bin (2.39-0ubuntu2) ... 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 146s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 147s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 147s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 147s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 147s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 150s Reading package lists... 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 151s Calculating upgrade... 151s The following packages have been kept back: 151s curl 151s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 155s autopkgtest [17:32:11]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 155s autopkgtest [17:32:11]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-experimenthub 157s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-experimenthub 2.10.0+ds-1 (dsc) [2288 B] 157s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-experimenthub 2.10.0+ds-1 (tar) [138 kB] 157s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-experimenthub 2.10.0+ds-1 (diff) [5324 B] 158s gpgv: Signature made Thu Nov 30 15:19:07 2023 UTC 158s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 158s gpgv: issuer "tille@debian.org" 158s gpgv: Can't check signature: No public key 158s dpkg-source: warning: cannot verify inline signature for ./r-bioc-experimenthub_2.10.0+ds-1.dsc: no acceptable signature found 158s autopkgtest [17:32:14]: testing package r-bioc-experimenthub version 2.10.0+ds-1 158s autopkgtest [17:32:14]: build not needed 159s autopkgtest [17:32:15]: test pkg-r-autopkgtest: preparing testbed 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 161s Starting pkgProblemResolver with broken count: 0 162s Starting 2 pkgProblemResolver with broken count: 0 162s Done 162s The following additional packages will be installed: 162s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 162s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 162s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 162s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 162s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 162s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 162s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 162s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 162s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 162s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 162s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 162s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 162s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 162s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 162s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 162s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 162s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 162s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 162s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 162s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 162s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 162s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 162s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 162s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 162s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 162s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 162s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 162s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 162s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 162s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 162s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 162s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel 162s r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings r-bioc-delayedarray 162s r-bioc-experimenthub r-bioc-genomeinfodb r-bioc-genomeinfodbdata 162s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-interactivedisplaybase 162s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib 162s r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 162s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 162s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 162s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 162s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 162s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 162s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 162s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 162s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 162s r-cran-generics r-cran-glue r-cran-highr r-cran-htmltools r-cran-htmlwidgets 162s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 162s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 162s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 162s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 162s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises r-cran-purrr 162s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-rlang 162s r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-snow 162s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble 162s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 162s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils 162s tex-common texlive-base texlive-bibtex-extra texlive-binaries 162s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 162s Suggested packages: 162s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 162s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 162s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 162s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 162s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 162s libboost-context1.83-dev libboost-contract1.83-dev 162s libboost-coroutine1.83-dev libboost-date-time1.83-dev 162s libboost-exception1.83-dev libboost-fiber1.83-dev 162s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 162s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 162s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 162s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 162s libboost-numpy1.83-dev libboost-program-options1.83-dev 162s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 162s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 162s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 162s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 162s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 162s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 162s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 162s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 162s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 162s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 162s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 162s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 162s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph 162s r-bioc-variantannotation r-bioc-rtracklayer r-bioc-genomicfeatures 162s r-bioc-ensembldb r-bioc-all r-cran-testthat r-bioc-affy r-bioc-deseq2 162s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 162s r-bioc-shortread r-cran-batchtools r-cran-data.table r-bioc-bsgenome 162s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 162s r-cran-r.utils r-bioc-edger r-bioc-gviz r-bioc-dexseq r-cran-markdown 162s r-bioc-sparsematrixstats r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr 162s r-cran-rstudioapi r-cran-rmysql r-cran-getopt r-cran-formattable 162s r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-scales 162s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 162s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 162s r-cran-here r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo 162s debhelper ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 162s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 162s Recommended packages: 162s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 162s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-downlit 162s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 162s r-cran-xml2 r-cran-webshot r-cran-ggplot2 r-cran-thematic r-cran-callr 162s r-cran-covr r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot 162s r-cran-whoami r-cran-bench r-cran-brio r-cran-decor r-cran-desc 162s r-cran-lobstr r-cran-progress r-cran-scales r-cran-spelling r-cran-webutils 162s r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-future w3m 162s | www-browser r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload 162s r-cran-waldo r-cran-cairo r-cran-markdown r-cran-ragg r-cran-jpeg 162s r-cran-readr r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick 162s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 162s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 162s r-cran-sodium r-cran-lubridate r-cran-xml r-cran-usethis r-cran-dygraphs 162s r-cran-dbitest r-cran-gert r-cran-gh r-cran-hms r-cran-rvest 162s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 162s r-cran-zeallot r-cran-renv r-cran-runit lmodern dvisvgm 162s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 162s x11-xserver-utils 162s The following packages will be REMOVED: 162s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 162s The following NEW packages will be installed: 162s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 162s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 162s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 162s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 162s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 162s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 162s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 162s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 162s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 162s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 162s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 162s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 162s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 162s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 162s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 162s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 162s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 162s libjs-popper.js libjs-prettify libjs-sifter.js 162s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 162s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 162s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 162s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 162s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 162s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 162s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 162s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 162s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 162s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 162s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 162s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 162s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationhub 162s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel 162s r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings r-bioc-delayedarray 162s r-bioc-experimenthub r-bioc-genomeinfodb r-bioc-genomeinfodbdata 162s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-interactivedisplaybase 163s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib 163s r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 163s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 163s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 163s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 163s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 163s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 163s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 163s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 163s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 163s r-cran-generics r-cran-glue r-cran-highr r-cran-htmltools r-cran-htmlwidgets 163s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 163s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 163s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 163s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 163s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises r-cran-purrr 163s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-rlang 163s r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-snow 163s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble 163s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 163s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils 163s tex-common texlive-base texlive-bibtex-extra texlive-binaries 163s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 163s The following packages will be upgraded: 163s curl 163s 1 upgraded, 278 newly installed, 5 to remove and 0 not upgraded. 163s Need to get 407 MB/407 MB of archives. 163s After this operation, 1319 MB of additional disk space will be used. 163s Get:1 /tmp/autopkgtest.U00KG8/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [768 B] 163s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 163s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 163s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 163s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 163s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 163s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 163s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 163s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 163s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 163s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 164s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 164s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 164s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 164s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 164s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 164s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 165s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 165s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 165s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 165s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 165s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 165s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 165s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 165s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 165s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 165s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 165s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 165s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 165s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 165s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 166s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 166s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 166s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 166s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 166s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 166s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 166s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 166s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 166s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 166s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 166s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 166s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 166s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 166s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 166s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 166s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 166s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 166s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 166s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 167s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 167s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 167s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 167s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 167s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 167s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 167s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 167s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 167s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 167s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 167s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 167s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 167s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 167s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 167s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 167s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 167s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 167s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 167s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 167s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 167s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 167s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 167s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 167s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 167s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 167s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 167s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 167s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 168s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 168s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 168s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 168s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 168s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 168s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 168s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 168s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 168s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 168s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 168s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 168s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 168s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 168s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 168s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 168s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 168s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 168s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 168s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 168s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 168s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 168s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 168s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 168s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 168s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 168s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 168s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 168s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 168s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 168s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 169s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 169s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 169s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 169s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 169s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 169s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 169s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 169s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 169s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 169s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 169s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 169s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 169s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 169s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 169s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 169s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 169s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 169s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 169s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 169s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 169s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 169s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 169s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 169s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 169s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 169s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 169s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 169s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 169s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 169s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 169s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 169s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 169s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 169s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 169s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 169s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 170s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 170s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 170s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 170s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 170s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 170s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 170s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 171s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 171s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 171s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 171s Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 171s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 171s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 171s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 171s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 171s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 171s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 171s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 171s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 171s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 171s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 171s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 171s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 171s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 171s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 171s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 171s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 171s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 171s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 171s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 171s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 171s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 171s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 171s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 171s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 171s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 171s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 171s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 171s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 171s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 171s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 171s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 171s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 171s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 171s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 171s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 171s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 172s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 172s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 172s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 172s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 173s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 173s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 173s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 173s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 173s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 173s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 173s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 173s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 173s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 173s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 173s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 173s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 173s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 173s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 174s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 174s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 174s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 174s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 174s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 174s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 174s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 174s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 174s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 174s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 174s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 174s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 174s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 174s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 174s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 174s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 174s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 174s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 174s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 174s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 174s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 174s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 174s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 174s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 174s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 174s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 174s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 174s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 174s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 174s Get:239 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 174s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 174s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 174s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 174s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 174s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 174s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 174s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 174s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 174s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 174s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 174s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 174s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 174s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 174s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 174s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 174s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 174s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 174s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 174s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 174s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 174s Get:260 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 174s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 175s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 175s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 175s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 177s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 177s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 177s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 177s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 177s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 177s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 177s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 177s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 177s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 177s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-experimenthub all 2.10.0+ds-1 [79.9 kB] 177s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 177s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 177s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 177s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 177s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 181s Preconfiguring packages ... 181s Fetched 407 MB in 15s (27.6 MB/s) 181s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 181s wget depends on libpsl5 (>= 0.16.0). 181s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 181s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 181s 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 181s Removing libpsl5:arm64 (0.21.2-1build1) ... 181s Selecting previously unselected package libpsl5t64:arm64. 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 181s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 181s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 182s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 182s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 182s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 182s Selecting previously unselected package libcurl4t64:arm64. 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 182s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 182s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 182s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 182s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 182s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 182s 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 182s Removing libpng16-16:arm64 (1.6.43-1) ... 182s Selecting previously unselected package libpng16-16t64:arm64. 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 182s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 182s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 183s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 183s parted depends on libreadline8 (>= 6.0). 183s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 183s gpgsm depends on libreadline8 (>= 6.0). 183s gpgconf depends on libreadline8 (>= 6.0). 183s gpg depends on libreadline8 (>= 6.0). 183s gawk depends on libreadline8 (>= 6.0). 183s fdisk depends on libreadline8 (>= 6.0). 183s 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 183s Removing libreadline8:arm64 (8.2-3) ... 183s Selecting previously unselected package libreadline8t64:arm64. 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 183s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 183s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 183s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 183s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 183s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 183s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 183s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 183s lsof depends on libtirpc3 (>= 1.0.2). 183s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 183s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 183s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 183s iproute2 depends on libtirpc3 (>= 1.0.2). 183s 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 183s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 183s Selecting previously unselected package libtirpc3t64:arm64. 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 183s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 183s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 183s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 183s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 184s Selecting previously unselected package libc-dev-bin. 184s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 184s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 184s Selecting previously unselected package linux-libc-dev:arm64. 184s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 184s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 184s Selecting previously unselected package libcrypt-dev:arm64. 184s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 184s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 184s Selecting previously unselected package libtirpc-dev:arm64. 184s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 184s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 184s Selecting previously unselected package libnsl-dev:arm64. 184s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 184s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 184s Selecting previously unselected package rpcsvc-proto. 184s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 184s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 184s Selecting previously unselected package libc6-dev:arm64. 184s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 184s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 185s Selecting previously unselected package libisl23:arm64. 185s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 185s Unpacking libisl23:arm64 (0.26-3) ... 185s Selecting previously unselected package libmpc3:arm64. 185s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 185s Unpacking libmpc3:arm64 (1.3.1-1) ... 185s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 185s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 185s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 185s Selecting previously unselected package cpp-13. 185s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 185s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 185s Selecting previously unselected package cpp-aarch64-linux-gnu. 185s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 185s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 185s Selecting previously unselected package cpp. 185s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 185s Unpacking cpp (4:13.2.0-7ubuntu1) ... 185s Selecting previously unselected package libcc1-0:arm64. 185s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 185s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 185s Selecting previously unselected package libgomp1:arm64. 185s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 185s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 185s Selecting previously unselected package libitm1:arm64. 185s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 185s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 186s Selecting previously unselected package libatomic1:arm64. 186s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 186s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 186s Selecting previously unselected package libasan8:arm64. 186s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 186s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 186s Selecting previously unselected package liblsan0:arm64. 186s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 186s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 186s Selecting previously unselected package libtsan2:arm64. 186s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 186s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 187s Selecting previously unselected package libubsan1:arm64. 187s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 187s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 187s Selecting previously unselected package libhwasan0:arm64. 187s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 187s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 187s Selecting previously unselected package libgcc-13-dev:arm64. 187s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 187s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 187s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 187s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 187s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 187s Selecting previously unselected package gcc-13. 188s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 188s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 188s Selecting previously unselected package gcc-aarch64-linux-gnu. 188s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 188s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 188s Selecting previously unselected package gcc. 188s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 188s Unpacking gcc (4:13.2.0-7ubuntu1) ... 188s Selecting previously unselected package libstdc++-13-dev:arm64. 188s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 188s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 188s Selecting previously unselected package g++-13-aarch64-linux-gnu. 188s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 188s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 188s Selecting previously unselected package g++-13. 188s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 188s Unpacking g++-13 (13.2.0-17ubuntu2) ... 188s Selecting previously unselected package g++-aarch64-linux-gnu. 188s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 188s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 188s Selecting previously unselected package g++. 188s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 188s Unpacking g++ (4:13.2.0-7ubuntu1) ... 188s Selecting previously unselected package build-essential. 188s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 188s Unpacking build-essential (12.10ubuntu1) ... 189s Selecting previously unselected package dctrl-tools. 189s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 189s Unpacking dctrl-tools (2.24-3build2) ... 189s Selecting previously unselected package fonts-dejavu-mono. 189s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 189s Unpacking fonts-dejavu-mono (2.37-8) ... 189s Selecting previously unselected package fonts-dejavu-core. 189s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 189s Unpacking fonts-dejavu-core (2.37-8) ... 189s Selecting previously unselected package fontconfig-config. 189s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 189s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 189s Selecting previously unselected package libfontconfig1:arm64. 189s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 189s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 189s Selecting previously unselected package fontconfig. 189s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 189s Unpacking fontconfig (2.15.0-1ubuntu1) ... 189s Selecting previously unselected package fonts-font-awesome. 189s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 189s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 189s Selecting previously unselected package fonts-glyphicons-halflings. 189s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 189s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 189s Selecting previously unselected package fonts-lmodern. 189s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 189s Unpacking fonts-lmodern (2.005-1) ... 189s Selecting previously unselected package fonts-mathjax. 189s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 189s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 189s Selecting previously unselected package libgfortran5:arm64. 189s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 189s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 189s Selecting previously unselected package libgfortran-13-dev:arm64. 189s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 189s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 189s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 189s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 189s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 190s Selecting previously unselected package gfortran-13. 190s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 190s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 190s Selecting previously unselected package gfortran-aarch64-linux-gnu. 190s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 190s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 190s Selecting previously unselected package gfortran. 190s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 190s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 190s Selecting previously unselected package icu-devtools. 190s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 190s Unpacking icu-devtools (74.2-1ubuntu1) ... 190s Selecting previously unselected package javascript-common. 190s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 190s Unpacking javascript-common (11+nmu1) ... 190s Selecting previously unselected package libio-string-perl. 190s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 190s Unpacking libio-string-perl (1.08-4) ... 190s Selecting previously unselected package liblatex-tounicode-perl. 190s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 190s Unpacking liblatex-tounicode-perl (0.54-2) ... 190s Selecting previously unselected package libbibtex-parser-perl. 191s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 191s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 191s Selecting previously unselected package libblas3:arm64. 191s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 191s Unpacking libblas3:arm64 (3.12.0-3) ... 191s Selecting previously unselected package libblas-dev:arm64. 191s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 191s Unpacking libblas-dev:arm64 (3.12.0-3) ... 191s Selecting previously unselected package libboost1.83-dev:arm64. 191s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 191s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 192s Selecting previously unselected package libboost-dev:arm64. 192s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 192s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 192s Selecting previously unselected package libbz2-dev:arm64. 192s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 192s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 192s Selecting previously unselected package libpixman-1-0:arm64. 192s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 192s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 192s Selecting previously unselected package libxcb-render0:arm64. 193s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 193s Unpacking libxcb-render0:arm64 (1.15-1) ... 193s Selecting previously unselected package libxcb-shm0:arm64. 193s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 193s Unpacking libxcb-shm0:arm64 (1.15-1) ... 193s Selecting previously unselected package libxrender1:arm64. 193s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 193s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 193s Selecting previously unselected package libcairo2:arm64. 193s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 193s Unpacking libcairo2:arm64 (1.18.0-1) ... 193s Selecting previously unselected package libdatrie1:arm64. 193s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 193s Unpacking libdatrie1:arm64 (0.2.13-3) ... 193s Selecting previously unselected package libdeflate0:arm64. 193s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 193s Unpacking libdeflate0:arm64 (1.19-1) ... 193s Selecting previously unselected package libgraphite2-3:arm64. 193s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 193s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 193s Selecting previously unselected package libharfbuzz0b:arm64. 193s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 193s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 193s Selecting previously unselected package x11-common. 193s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 193s Unpacking x11-common (1:7.7+23ubuntu2) ... 193s Selecting previously unselected package libice6:arm64. 193s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 193s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 193s Selecting previously unselected package libicu-dev:arm64. 193s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 193s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 193s Selecting previously unselected package libjpeg-turbo8:arm64. 193s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 193s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 193s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 193s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 193s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 194s Selecting previously unselected package libjpeg8:arm64. 194s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 194s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 194s Selecting previously unselected package libjpeg8-dev:arm64. 194s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 194s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 194s Selecting previously unselected package libjpeg-dev:arm64. 194s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 194s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 194s Selecting previously unselected package libjs-bootstrap. 194s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 194s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 194s Selecting previously unselected package libjs-popper.js. 194s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 194s Unpacking libjs-popper.js (1.16.1+ds-6) ... 194s Selecting previously unselected package libjs-bootstrap4. 194s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 194s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 194s Selecting previously unselected package libjs-d3. 194s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 194s Unpacking libjs-d3 (3.5.17-4) ... 194s Selecting previously unselected package libjs-es5-shim. 194s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 194s Unpacking libjs-es5-shim (4.6.7-2) ... 194s Selecting previously unselected package libjs-highlight.js. 194s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 194s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 194s Selecting previously unselected package libjs-jquery. 194s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 194s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 194s Selecting previously unselected package libjs-jquery-datatables. 194s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 194s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 194s Selecting previously unselected package libjs-jquery-datatables-extensions. 194s Preparing to unpack .../085-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 194s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 194s Selecting previously unselected package libjs-sifter.js. 194s Preparing to unpack .../086-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 194s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 194s Selecting previously unselected package libjs-microplugin.js. 194s Preparing to unpack .../087-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 194s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 194s Selecting previously unselected package libjs-jquery-selectize.js. 194s Preparing to unpack .../088-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 194s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 194s Selecting previously unselected package libjs-jquery-ui. 194s Preparing to unpack .../089-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 194s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 194s Selecting previously unselected package libjs-json. 194s Preparing to unpack .../090-libjs-json_0~20221030+~1.0.8-1_all.deb ... 194s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 195s Selecting previously unselected package libjs-lunr. 195s Preparing to unpack .../091-libjs-lunr_2.3.9~dfsg-2_all.deb ... 195s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 195s Selecting previously unselected package libjs-prettify. 195s Preparing to unpack .../092-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 195s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 195s Selecting previously unselected package libkpathsea6:arm64. 195s Preparing to unpack .../093-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 195s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 195s Selecting previously unselected package liblapack3:arm64. 195s Preparing to unpack .../094-liblapack3_3.12.0-3_arm64.deb ... 195s Unpacking liblapack3:arm64 (3.12.0-3) ... 195s Selecting previously unselected package liblapack-dev:arm64. 195s Preparing to unpack .../095-liblapack-dev_3.12.0-3_arm64.deb ... 195s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 196s Selecting previously unselected package liblerc4:arm64. 196s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 196s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 196s Selecting previously unselected package liblua5.4-0:arm64. 196s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_arm64.deb ... 196s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 196s Selecting previously unselected package libncurses-dev:arm64. 196s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 196s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 196s Selecting previously unselected package libthai-data. 196s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 196s Unpacking libthai-data (0.1.29-2) ... 196s Selecting previously unselected package libthai0:arm64. 196s Preparing to unpack .../100-libthai0_0.1.29-2_arm64.deb ... 196s Unpacking libthai0:arm64 (0.1.29-2) ... 196s Selecting previously unselected package libpango-1.0-0:arm64. 196s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 196s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 196s Selecting previously unselected package libpangoft2-1.0-0:arm64. 196s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 196s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 196s Selecting previously unselected package libpangocairo-1.0-0:arm64. 196s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 196s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 196s Selecting previously unselected package libpaper1:arm64. 196s Preparing to unpack .../104-libpaper1_1.1.29_arm64.deb ... 196s Unpacking libpaper1:arm64 (1.1.29) ... 196s Selecting previously unselected package libpaper-utils. 196s Preparing to unpack .../105-libpaper-utils_1.1.29_arm64.deb ... 196s Unpacking libpaper-utils (1.1.29) ... 196s Selecting previously unselected package libpcre2-16-0:arm64. 196s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 196s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 196s Selecting previously unselected package libpcre2-32-0:arm64. 196s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 196s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 196s Selecting previously unselected package libpcre2-posix3:arm64. 196s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 196s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 196s Selecting previously unselected package libpcre2-dev:arm64. 196s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 196s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 196s Selecting previously unselected package libpkgconf3:arm64. 196s Preparing to unpack .../110-libpkgconf3_1.8.1-2_arm64.deb ... 196s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 196s Selecting previously unselected package zlib1g-dev:arm64. 196s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 196s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 196s Selecting previously unselected package libpng-dev:arm64. 196s Preparing to unpack .../112-libpng-dev_1.6.43-3_arm64.deb ... 196s Unpacking libpng-dev:arm64 (1.6.43-3) ... 196s Selecting previously unselected package libpotrace0:arm64. 196s Preparing to unpack .../113-libpotrace0_1.16-2_arm64.deb ... 196s Unpacking libpotrace0:arm64 (1.16-2) ... 196s Selecting previously unselected package libptexenc1:arm64. 196s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_arm64.deb ... 196s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 196s Selecting previously unselected package libreadline-dev:arm64. 196s Preparing to unpack .../115-libreadline-dev_8.2-3.1_arm64.deb ... 196s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 197s Selecting previously unselected package libsharpyuv0:arm64. 197s Preparing to unpack .../116-libsharpyuv0_1.3.2-0.4_arm64.deb ... 197s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 197s Selecting previously unselected package libsm6:arm64. 197s Preparing to unpack .../117-libsm6_2%3a1.2.3-1build2_arm64.deb ... 197s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 197s Selecting previously unselected package libsynctex2:arm64. 197s Preparing to unpack .../118-libsynctex2_2023.20230311.66589-9_arm64.deb ... 197s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 197s Selecting previously unselected package libtcl8.6:arm64. 197s Preparing to unpack .../119-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 197s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 197s Selecting previously unselected package libteckit0:arm64. 197s Preparing to unpack .../120-libteckit0_2.5.12+ds1-1_arm64.deb ... 197s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 197s Selecting previously unselected package libtexlua53-5:arm64. 197s Preparing to unpack .../121-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 197s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 197s Selecting previously unselected package libjbig0:arm64. 197s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 197s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 197s Selecting previously unselected package libwebp7:arm64. 197s Preparing to unpack .../123-libwebp7_1.3.2-0.4_arm64.deb ... 197s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 197s Selecting previously unselected package libtiff6:arm64. 197s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 197s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 197s Selecting previously unselected package libxft2:arm64. 197s Preparing to unpack .../125-libxft2_2.3.6-1_arm64.deb ... 197s Unpacking libxft2:arm64 (2.3.6-1) ... 197s Selecting previously unselected package libxss1:arm64. 197s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_arm64.deb ... 197s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 197s Selecting previously unselected package libtk8.6:arm64. 197s Preparing to unpack .../127-libtk8.6_8.6.13-2_arm64.deb ... 197s Unpacking libtk8.6:arm64 (8.6.13-2) ... 197s Selecting previously unselected package libxt6t64:arm64. 197s Preparing to unpack .../128-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 197s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 197s Selecting previously unselected package libxmu6:arm64. 197s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_arm64.deb ... 197s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 197s Selecting previously unselected package libxpm4:arm64. 197s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_arm64.deb ... 197s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 197s Selecting previously unselected package libxaw7:arm64. 197s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_arm64.deb ... 197s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 197s Selecting previously unselected package libxi6:arm64. 197s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_arm64.deb ... 197s Unpacking libxi6:arm64 (2:1.8.1-1) ... 197s Selecting previously unselected package libzzip-0-13:arm64. 197s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 197s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 197s Selecting previously unselected package zip. 197s Preparing to unpack .../134-zip_3.0-13_arm64.deb ... 197s Unpacking zip (3.0-13) ... 197s Selecting previously unselected package unzip. 197s Preparing to unpack .../135-unzip_6.0-28ubuntu3_arm64.deb ... 197s Unpacking unzip (6.0-28ubuntu3) ... 197s Selecting previously unselected package xdg-utils. 197s Preparing to unpack .../136-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 197s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 197s Selecting previously unselected package r-base-core. 197s Preparing to unpack .../137-r-base-core_4.3.3-2build1_arm64.deb ... 197s Unpacking r-base-core (4.3.3-2build1) ... 198s Selecting previously unselected package r-cran-littler. 198s Preparing to unpack .../138-r-cran-littler_0.3.19-1_arm64.deb ... 198s Unpacking r-cran-littler (0.3.19-1) ... 198s Selecting previously unselected package littler. 198s Preparing to unpack .../139-littler_0.3.19-1_all.deb ... 198s Unpacking littler (0.3.19-1) ... 198s Selecting previously unselected package node-bootstrap-sass. 198s Preparing to unpack .../140-node-bootstrap-sass_3.4.3-2_all.deb ... 198s Unpacking node-bootstrap-sass (3.4.3-2) ... 198s Selecting previously unselected package node-html5shiv. 198s Preparing to unpack .../141-node-html5shiv_3.7.3+dfsg-5_all.deb ... 198s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 198s Selecting previously unselected package node-normalize.css. 198s Preparing to unpack .../142-node-normalize.css_8.0.1-5_all.deb ... 198s Unpacking node-normalize.css (8.0.1-5) ... 198s Selecting previously unselected package pandoc-data. 198s Preparing to unpack .../143-pandoc-data_3.1.3-1_all.deb ... 198s Unpacking pandoc-data (3.1.3-1) ... 198s Selecting previously unselected package pandoc. 198s Preparing to unpack .../144-pandoc_3.1.3+ds-2_arm64.deb ... 198s Unpacking pandoc (3.1.3+ds-2) ... 199s Selecting previously unselected package pkgconf-bin. 199s Preparing to unpack .../145-pkgconf-bin_1.8.1-2_arm64.deb ... 199s Unpacking pkgconf-bin (1.8.1-2) ... 199s Selecting previously unselected package pkgconf:arm64. 199s Preparing to unpack .../146-pkgconf_1.8.1-2_arm64.deb ... 199s Unpacking pkgconf:arm64 (1.8.1-2) ... 199s Selecting previously unselected package pkg-config:arm64. 199s Preparing to unpack .../147-pkg-config_1.8.1-2_arm64.deb ... 199s Unpacking pkg-config:arm64 (1.8.1-2) ... 199s Selecting previously unselected package liblzma-dev:arm64. 199s Preparing to unpack .../148-liblzma-dev_5.4.5-0.3_arm64.deb ... 199s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 199s Selecting previously unselected package r-base-dev. 199s Preparing to unpack .../149-r-base-dev_4.3.3-2build1_all.deb ... 199s Unpacking r-base-dev (4.3.3-2build1) ... 199s Selecting previously unselected package pkg-r-autopkgtest. 199s Preparing to unpack .../150-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 199s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 199s Selecting previously unselected package r-bioc-biocgenerics. 199s Preparing to unpack .../151-r-bioc-biocgenerics_0.48.1-2_all.deb ... 199s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 199s Selecting previously unselected package r-bioc-biobase. 199s Preparing to unpack .../152-r-bioc-biobase_2.62.0-1_arm64.deb ... 199s Unpacking r-bioc-biobase (2.62.0-1) ... 199s Selecting previously unselected package r-bioc-s4vectors. 200s Preparing to unpack .../153-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 200s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 200s Selecting previously unselected package r-bioc-iranges. 200s Preparing to unpack .../154-r-bioc-iranges_2.36.0-1_arm64.deb ... 200s Unpacking r-bioc-iranges (2.36.0-1) ... 200s Selecting previously unselected package r-cran-dbi. 200s Preparing to unpack .../155-r-cran-dbi_1.2.2-1_all.deb ... 200s Unpacking r-cran-dbi (1.2.2-1) ... 200s Selecting previously unselected package r-cran-bit. 200s Preparing to unpack .../156-r-cran-bit_4.0.5-1_arm64.deb ... 200s Unpacking r-cran-bit (4.0.5-1) ... 200s Selecting previously unselected package r-cran-bit64. 200s Preparing to unpack .../157-r-cran-bit64_4.0.5-1_arm64.deb ... 200s Unpacking r-cran-bit64 (4.0.5-1) ... 200s Selecting previously unselected package r-cran-rlang. 200s Preparing to unpack .../158-r-cran-rlang_1.1.3-1_arm64.deb ... 200s Unpacking r-cran-rlang (1.1.3-1) ... 200s Selecting previously unselected package r-cran-cli. 201s Preparing to unpack .../159-r-cran-cli_3.6.2-1_arm64.deb ... 201s Unpacking r-cran-cli (3.6.2-1) ... 201s Selecting previously unselected package r-cran-glue. 201s Preparing to unpack .../160-r-cran-glue_1.7.0-1_arm64.deb ... 201s Unpacking r-cran-glue (1.7.0-1) ... 201s Selecting previously unselected package r-cran-lifecycle. 201s Preparing to unpack .../161-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 201s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 201s Selecting previously unselected package r-cran-vctrs. 201s Preparing to unpack .../162-r-cran-vctrs_0.6.5-1_arm64.deb ... 201s Unpacking r-cran-vctrs (0.6.5-1) ... 201s Selecting previously unselected package r-cran-blob. 202s Preparing to unpack .../163-r-cran-blob_1.2.4-1_all.deb ... 202s Unpacking r-cran-blob (1.2.4-1) ... 202s Selecting previously unselected package r-cran-fastmap. 202s Preparing to unpack .../164-r-cran-fastmap_1.1.1-1_arm64.deb ... 202s Unpacking r-cran-fastmap (1.1.1-1) ... 202s Selecting previously unselected package r-cran-cachem. 202s Preparing to unpack .../165-r-cran-cachem_1.0.8-1_arm64.deb ... 202s Unpacking r-cran-cachem (1.0.8-1) ... 202s Selecting previously unselected package r-cran-memoise. 202s Preparing to unpack .../166-r-cran-memoise_2.0.1-1_all.deb ... 202s Unpacking r-cran-memoise (2.0.1-1) ... 202s Selecting previously unselected package r-cran-pkgconfig. 202s Preparing to unpack .../167-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 202s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 202s Selecting previously unselected package r-cran-plogr. 202s Preparing to unpack .../168-r-cran-plogr_0.2.0-3build1_all.deb ... 202s Unpacking r-cran-plogr (0.2.0-3build1) ... 202s Selecting previously unselected package r-cran-cpp11. 202s Preparing to unpack .../169-r-cran-cpp11_0.4.7-1_all.deb ... 202s Unpacking r-cran-cpp11 (0.4.7-1) ... 202s Selecting previously unselected package r-cran-rsqlite. 203s Preparing to unpack .../170-r-cran-rsqlite_2.3.4-1_arm64.deb ... 203s Unpacking r-cran-rsqlite (2.3.4-1) ... 203s Selecting previously unselected package r-cran-curl. 203s Preparing to unpack .../171-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 203s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 203s Selecting previously unselected package r-cran-jsonlite. 203s Preparing to unpack .../172-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 203s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 203s Selecting previously unselected package r-cran-mime. 203s Preparing to unpack .../173-r-cran-mime_0.12-1_arm64.deb ... 203s Unpacking r-cran-mime (0.12-1) ... 203s Selecting previously unselected package r-cran-sys. 203s Preparing to unpack .../174-r-cran-sys_3.4.2-1_arm64.deb ... 203s Unpacking r-cran-sys (3.4.2-1) ... 203s Selecting previously unselected package r-cran-askpass. 203s Preparing to unpack .../175-r-cran-askpass_1.2.0-1_arm64.deb ... 203s Unpacking r-cran-askpass (1.2.0-1) ... 203s Selecting previously unselected package r-cran-openssl. 203s Preparing to unpack .../176-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 203s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 203s Selecting previously unselected package r-cran-r6. 203s Preparing to unpack .../177-r-cran-r6_2.5.1-1_all.deb ... 203s Unpacking r-cran-r6 (2.5.1-1) ... 203s Selecting previously unselected package r-cran-httr. 203s Preparing to unpack .../178-r-cran-httr_1.4.7+dfsg-1_all.deb ... 203s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 203s Selecting previously unselected package r-cran-png. 203s Preparing to unpack .../179-r-cran-png_0.1-8-1_arm64.deb ... 203s Unpacking r-cran-png (0.1-8-1) ... 203s Selecting previously unselected package r-bioc-zlibbioc. 203s Preparing to unpack .../180-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 203s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 203s Selecting previously unselected package r-bioc-xvector. 203s Preparing to unpack .../181-r-bioc-xvector_0.42.0-1_arm64.deb ... 203s Unpacking r-bioc-xvector (0.42.0-1) ... 203s Selecting previously unselected package r-cran-bitops. 203s Preparing to unpack .../182-r-cran-bitops_1.0-7-1_arm64.deb ... 203s Unpacking r-cran-bitops (1.0-7-1) ... 204s Selecting previously unselected package r-cran-rcurl. 204s Preparing to unpack .../183-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 204s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 204s Selecting previously unselected package r-bioc-genomeinfodbdata. 204s Preparing to unpack .../184-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 204s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 204s Selecting previously unselected package r-bioc-genomeinfodb. 204s Preparing to unpack .../185-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 204s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 204s Selecting previously unselected package r-cran-crayon. 204s Preparing to unpack .../186-r-cran-crayon_1.5.2-1_all.deb ... 204s Unpacking r-cran-crayon (1.5.2-1) ... 204s Selecting previously unselected package r-bioc-biostrings. 204s Preparing to unpack .../187-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 204s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 204s Selecting previously unselected package r-bioc-keggrest. 204s Preparing to unpack .../188-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 204s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 204s Selecting previously unselected package r-bioc-annotationdbi. 204s Preparing to unpack .../189-r-bioc-annotationdbi_1.64.1-1_all.deb ... 204s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 204s Selecting previously unselected package r-cran-generics. 204s Preparing to unpack .../190-r-cran-generics_0.1.3-1_all.deb ... 204s Unpacking r-cran-generics (0.1.3-1) ... 204s Selecting previously unselected package r-cran-magrittr. 205s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_arm64.deb ... 205s Unpacking r-cran-magrittr (2.0.3-1) ... 205s Selecting previously unselected package r-cran-fansi. 205s Preparing to unpack .../192-r-cran-fansi_1.0.5-1_arm64.deb ... 205s Unpacking r-cran-fansi (1.0.5-1) ... 205s Selecting previously unselected package r-cran-utf8. 205s Preparing to unpack .../193-r-cran-utf8_1.2.4-1_arm64.deb ... 205s Unpacking r-cran-utf8 (1.2.4-1) ... 205s Selecting previously unselected package r-cran-pillar. 205s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 205s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 205s Selecting previously unselected package r-cran-tibble. 205s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 205s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 205s Selecting previously unselected package r-cran-withr. 205s Preparing to unpack .../196-r-cran-withr_2.5.0-1_all.deb ... 205s Unpacking r-cran-withr (2.5.0-1) ... 205s Selecting previously unselected package r-cran-tidyselect. 205s Preparing to unpack .../197-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 205s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 205s Selecting previously unselected package r-cran-dplyr. 205s Preparing to unpack .../198-r-cran-dplyr_1.1.4-1_arm64.deb ... 205s Unpacking r-cran-dplyr (1.1.4-1) ... 205s Selecting previously unselected package r-cran-purrr. 206s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_arm64.deb ... 206s Unpacking r-cran-purrr (1.0.2-1) ... 206s Selecting previously unselected package r-cran-stringi. 206s Preparing to unpack .../200-r-cran-stringi_1.8.3-1_arm64.deb ... 206s Unpacking r-cran-stringi (1.8.3-1) ... 206s Selecting previously unselected package r-cran-stringr. 206s Preparing to unpack .../201-r-cran-stringr_1.5.1-1_all.deb ... 206s Unpacking r-cran-stringr (1.5.1-1) ... 206s Selecting previously unselected package r-cran-tidyr. 206s Preparing to unpack .../202-r-cran-tidyr_1.3.1-1_arm64.deb ... 206s Unpacking r-cran-tidyr (1.3.1-1) ... 206s Selecting previously unselected package r-cran-dbplyr. 206s Preparing to unpack .../203-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 206s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 206s Selecting previously unselected package r-cran-filelock. 206s Preparing to unpack .../204-r-cran-filelock_1.0.3-1_arm64.deb ... 206s Unpacking r-cran-filelock (1.0.3-1) ... 206s Selecting previously unselected package r-bioc-biocfilecache. 206s Preparing to unpack .../205-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 206s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 206s Selecting previously unselected package r-cran-biocmanager. 206s Preparing to unpack .../206-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 206s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 206s Selecting previously unselected package r-bioc-biocversion. 206s Preparing to unpack .../207-r-bioc-biocversion_3.18.1-1_all.deb ... 206s Unpacking r-bioc-biocversion (3.18.1-1) ... 206s Selecting previously unselected package r-cran-rappdirs. 206s Preparing to unpack .../208-r-cran-rappdirs_0.3.3-1_arm64.deb ... 206s Unpacking r-cran-rappdirs (0.3.3-1) ... 206s Selecting previously unselected package r-cran-yaml. 206s Preparing to unpack .../209-r-cran-yaml_2.3.8-1_arm64.deb ... 206s Unpacking r-cran-yaml (2.3.8-1) ... 206s Selecting previously unselected package r-cran-pkgkitten. 206s Preparing to unpack .../210-r-cran-pkgkitten_0.2.3-1_all.deb ... 206s Unpacking r-cran-pkgkitten (0.2.3-1) ... 207s Selecting previously unselected package r-cran-rcpp. 207s Preparing to unpack .../211-r-cran-rcpp_1.0.12-1_arm64.deb ... 207s Unpacking r-cran-rcpp (1.0.12-1) ... 207s Selecting previously unselected package r-cran-later. 207s Preparing to unpack .../212-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 207s Unpacking r-cran-later (1.3.2+dfsg-1) ... 207s Selecting previously unselected package r-cran-promises. 207s Preparing to unpack .../213-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 207s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 207s Selecting previously unselected package r-cran-httpuv. 207s Preparing to unpack .../214-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 207s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 207s Selecting previously unselected package r-cran-xtable. 207s Preparing to unpack .../215-r-cran-xtable_1%3a1.8-4-2_all.deb ... 207s Unpacking r-cran-xtable (1:1.8-4-2) ... 207s Selecting previously unselected package r-cran-base64enc. 207s Preparing to unpack .../216-r-cran-base64enc_0.1-3-3_arm64.deb ... 207s Unpacking r-cran-base64enc (0.1-3-3) ... 207s Selecting previously unselected package r-cran-digest. 207s Preparing to unpack .../217-r-cran-digest_0.6.34-1_arm64.deb ... 207s Unpacking r-cran-digest (0.6.34-1) ... 207s Selecting previously unselected package r-cran-ellipsis. 207s Preparing to unpack .../218-r-cran-ellipsis_0.3.2-2_arm64.deb ... 207s Unpacking r-cran-ellipsis (0.3.2-2) ... 207s Selecting previously unselected package r-cran-htmltools. 207s Preparing to unpack .../219-r-cran-htmltools_0.5.7-1_arm64.deb ... 207s Unpacking r-cran-htmltools (0.5.7-1) ... 207s Selecting previously unselected package r-cran-fontawesome. 207s Preparing to unpack .../220-r-cran-fontawesome_0.5.2-1_all.deb ... 207s Unpacking r-cran-fontawesome (0.5.2-1) ... 207s Selecting previously unselected package r-cran-sourcetools. 207s Preparing to unpack .../221-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 207s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 207s Selecting previously unselected package r-cran-commonmark. 207s Preparing to unpack .../222-r-cran-commonmark_1.9.1-1_arm64.deb ... 207s Unpacking r-cran-commonmark (1.9.1-1) ... 207s Selecting previously unselected package r-cran-jquerylib. 207s Preparing to unpack .../223-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 207s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 207s Selecting previously unselected package r-cran-fs. 207s Preparing to unpack .../224-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 207s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 207s Selecting previously unselected package r-cran-sass. 208s Preparing to unpack .../225-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 208s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 208s Selecting previously unselected package r-cran-bslib. 208s Preparing to unpack .../226-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 208s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 208s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 208s Preparing to unpack .../227-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 208s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 208s Selecting previously unselected package r-cran-shiny. 208s Preparing to unpack .../228-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 208s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 208s Selecting previously unselected package r-cran-evaluate. 208s Preparing to unpack .../229-r-cran-evaluate_0.23-1_all.deb ... 208s Unpacking r-cran-evaluate (0.23-1) ... 208s Selecting previously unselected package r-cran-xfun. 208s Preparing to unpack .../230-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 208s Unpacking r-cran-xfun (0.41+dfsg-1) ... 208s Selecting previously unselected package r-cran-highr. 208s Preparing to unpack .../231-r-cran-highr_0.10+dfsg-1_all.deb ... 208s Unpacking r-cran-highr (0.10+dfsg-1) ... 208s Selecting previously unselected package libjs-mathjax. 208s Preparing to unpack .../232-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 208s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 209s Selecting previously unselected package r-cran-knitr. 209s Preparing to unpack .../233-r-cran-knitr_1.45+dfsg-1_all.deb ... 209s Unpacking r-cran-knitr (1.45+dfsg-1) ... 209s Selecting previously unselected package r-cran-tinytex. 209s Preparing to unpack .../234-r-cran-tinytex_0.49-1_all.deb ... 209s Unpacking r-cran-tinytex (0.49-1) ... 209s Selecting previously unselected package libjs-modernizr. 209s Preparing to unpack .../235-libjs-modernizr_2.6.2+ds1-5_all.deb ... 209s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 209s Selecting previously unselected package r-cran-rmarkdown. 209s Preparing to unpack .../236-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 209s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 210s Selecting previously unselected package r-cran-htmlwidgets. 210s Preparing to unpack .../237-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 210s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 210s Selecting previously unselected package r-cran-lazyeval. 210s Preparing to unpack .../238-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 210s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 210s Selecting previously unselected package r-cran-crosstalk. 210s Preparing to unpack .../239-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 210s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 210s Selecting previously unselected package r-cran-dt. 210s Preparing to unpack .../240-r-cran-dt_0.31+dfsg-1_all.deb ... 210s Unpacking r-cran-dt (0.31+dfsg-1) ... 210s Selecting previously unselected package r-bioc-interactivedisplaybase. 210s Preparing to unpack .../241-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 210s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 210s Selecting previously unselected package r-bioc-annotationhub. 211s Preparing to unpack .../242-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 211s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 211s Selecting previously unselected package r-cran-formatr. 211s Preparing to unpack .../243-r-cran-formatr_1.14-1_all.deb ... 211s Unpacking r-cran-formatr (1.14-1) ... 211s Selecting previously unselected package r-cran-lambda.r. 211s Preparing to unpack .../244-r-cran-lambda.r_1.2.4-2build1_all.deb ... 211s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 212s Selecting previously unselected package r-cran-futile.options. 212s Preparing to unpack .../245-r-cran-futile.options_1.0.1-3build1_all.deb ... 212s Unpacking r-cran-futile.options (1.0.1-3build1) ... 212s Selecting previously unselected package r-cran-futile.logger. 212s Preparing to unpack .../246-r-cran-futile.logger_1.4.3-4build1_all.deb ... 212s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 212s Selecting previously unselected package r-cran-snow. 212s Preparing to unpack .../247-r-cran-snow_1%3a0.4.4-2_all.deb ... 212s Unpacking r-cran-snow (1:0.4.4-2) ... 212s Selecting previously unselected package r-cran-codetools. 213s Preparing to unpack .../248-r-cran-codetools_0.2-19-1_all.deb ... 213s Unpacking r-cran-codetools (0.2-19-1) ... 213s Selecting previously unselected package r-cran-bh. 213s Preparing to unpack .../249-r-cran-bh_1.84.0-1_all.deb ... 213s Unpacking r-cran-bh (1.84.0-1) ... 213s Selecting previously unselected package r-bioc-biocparallel. 214s Preparing to unpack .../250-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 214s Unpacking r-bioc-biocparallel (1.36.0-1) ... 214s Selecting previously unselected package r-cran-bookdown. 214s Preparing to unpack .../251-r-cran-bookdown_0.37+dfsg-1_all.deb ... 214s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 214s Selecting previously unselected package tex-common. 214s Preparing to unpack .../252-tex-common_6.18_all.deb ... 214s Unpacking tex-common (6.18) ... 214s Selecting previously unselected package t1utils. 214s Preparing to unpack .../253-t1utils_1.41-4build2_arm64.deb ... 214s Unpacking t1utils (1.41-4build2) ... 214s Selecting previously unselected package texlive-binaries. 214s Preparing to unpack .../254-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 214s Unpacking texlive-binaries (2023.20230311.66589-9) ... 215s Selecting previously unselected package texlive-base. 215s Preparing to unpack .../255-texlive-base_2023.20240207-1_all.deb ... 215s Unpacking texlive-base (2023.20240207-1) ... 216s Selecting previously unselected package texlive-latex-base. 216s Preparing to unpack .../256-texlive-latex-base_2023.20240207-1_all.deb ... 216s Unpacking texlive-latex-base (2023.20240207-1) ... 216s Selecting previously unselected package texlive-bibtex-extra. 216s Preparing to unpack .../257-texlive-bibtex-extra_2023.20240207-1_all.deb ... 216s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 219s Selecting previously unselected package r-bioc-biocstyle. 220s Preparing to unpack .../258-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 220s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 220s Selecting previously unselected package r-cran-lattice. 220s Preparing to unpack .../259-r-cran-lattice_0.22-5-1_arm64.deb ... 220s Unpacking r-cran-lattice (0.22-5-1) ... 220s Selecting previously unselected package r-cran-matrix. 220s Preparing to unpack .../260-r-cran-matrix_1.6-5-1_arm64.deb ... 220s Unpacking r-cran-matrix (1.6-5-1) ... 220s Selecting previously unselected package r-cran-matrixstats. 220s Preparing to unpack .../261-r-cran-matrixstats_1.2.0-1_arm64.deb ... 220s Unpacking r-cran-matrixstats (1.2.0-1) ... 220s Selecting previously unselected package r-bioc-matrixgenerics. 220s Preparing to unpack .../262-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 220s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 221s Selecting previously unselected package r-cran-abind. 221s Preparing to unpack .../263-r-cran-abind_1.4-5-2_all.deb ... 221s Unpacking r-cran-abind (1.4-5-2) ... 221s Selecting previously unselected package r-bioc-s4arrays. 221s Preparing to unpack .../264-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 221s Selecting previously unselected package r-bioc-sparsearray. 221s Preparing to unpack .../265-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 221s Selecting previously unselected package r-bioc-delayedarray. 221s Preparing to unpack .../266-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 221s Selecting previously unselected package r-bioc-experimenthub. 221s Preparing to unpack .../267-r-bioc-experimenthub_2.10.0+ds-1_all.deb ... 221s Unpacking r-bioc-experimenthub (2.10.0+ds-1) ... 221s Selecting previously unselected package r-bioc-genomicranges. 221s Preparing to unpack .../268-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 221s Selecting previously unselected package r-bioc-summarizedexperiment. 221s Preparing to unpack .../269-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 221s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 221s Selecting previously unselected package r-bioc-rhtslib. 221s Preparing to unpack .../270-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 221s Selecting previously unselected package r-bioc-rsamtools. 221s Preparing to unpack .../271-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 222s Selecting previously unselected package r-bioc-genomicalignments. 222s Preparing to unpack .../272-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 222s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 222s Selecting previously unselected package autopkgtest-satdep. 222s Preparing to unpack .../273-1-autopkgtest-satdep.deb ... 222s Unpacking autopkgtest-satdep (0) ... 222s Setting up libjs-json (0~20221030+~1.0.8-1) ... 222s Setting up javascript-common (11+nmu1) ... 222s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 222s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 222s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 222s Setting up libpaper1:arm64 (1.1.29) ... 222s 222s Creating config file /etc/papersize with new version 222s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 222s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 222s Setting up libxpm4:arm64 (1:3.5.17-1) ... 222s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 222s Setting up libxi6:arm64 (2:1.8.1-1) ... 222s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 222s Setting up libdatrie1:arm64 (0.2.13-3) ... 222s Setting up libjs-popper.js (1.16.1+ds-6) ... 222s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 222s Setting up libxcb-render0:arm64 (1.15-1) ... 222s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 222s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 222s Setting up libjs-lunr (2.3.9~dfsg-2) ... 222s Setting up unzip (6.0-28ubuntu3) ... 222s Setting up liblatex-tounicode-perl (0.54-2) ... 222s Setting up x11-common (1:7.7+23ubuntu2) ... 223s Setting up node-html5shiv (3.7.3+dfsg-5) ... 223s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 223s Setting up libdeflate0:arm64 (1.19-1) ... 223s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 223s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 223s Setting up libxcb-shm0:arm64 (1.15-1) ... 223s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 223s Setting up libpaper-utils (1.1.29) ... 223s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 223s Setting up libjs-modernizr (2.6.2+ds1-5) ... 223s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 223s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 223s Setting up libjs-es5-shim (4.6.7-2) ... 223s Setting up tex-common (6.18) ... 223s update-language: texlive-base not installed and configured, doing nothing! 223s Setting up libio-string-perl (1.08-4) ... 223s Setting up zip (3.0-13) ... 223s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 223s Setting up libblas3:arm64 (3.12.0-3) ... 223s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 223s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 223s Setting up libpkgconf3:arm64 (1.8.1-2) ... 223s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 223s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 223s Setting up t1utils (1.41-4build2) ... 223s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 223s Setting up libjs-d3 (3.5.17-4) ... 223s Setting up fonts-dejavu-mono (2.37-8) ... 223s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 223s Setting up libmpc3:arm64 (1.3.1-1) ... 223s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 223s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 223s Setting up icu-devtools (74.2-1ubuntu1) ... 223s Setting up fonts-dejavu-core (2.37-8) ... 223s Setting up pkgconf-bin (1.8.1-2) ... 223s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 223s Setting up libkpathsea6:arm64 (2023.20230311.66589-9) ... 223s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 223s Setting up libwebp7:arm64 (1.3.2-0.4) ... 223s Setting up libreadline8t64:arm64 (8.2-3.1) ... 223s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 223s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 223s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 223s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 223s Setting up libnsl-dev:arm64 (1.3.0-3) ... 223s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 223s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 223s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 223s Setting up fonts-lmodern (2.005-1) ... 223s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 223s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 223s Setting up libthai-data (0.1.29-2) ... 223s Setting up node-bootstrap-sass (3.4.3-2) ... 223s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 223s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 223s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 223s Setting up pandoc-data (3.1.3-1) ... 223s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 223s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 223s Setting up libisl23:arm64 (0.26-3) ... 223s Setting up libc-dev-bin (2.39-0ubuntu2) ... 223s Setting up node-normalize.css (8.0.1-5) ... 223s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 223s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 223s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 223s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 223s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 223s Setting up libblas-dev:arm64 (3.12.0-3) ... 223s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 223s Setting up dctrl-tools (2.24-3build2) ... 223s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 223s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 223s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 223s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 223s Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 223s Setting up libpotrace0:arm64 (1.16-2) ... 223s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 223s Setting up libice6:arm64 (2:1.0.10-1build2) ... 223s Setting up liblapack3:arm64 (3.12.0-3) ... 223s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 223s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 223s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 223s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 224s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 224s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 224s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 224s Setting up pkgconf:arm64 (1.8.1-2) ... 224s Setting up libthai0:arm64 (0.1.29-2) ... 224s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 224s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 224s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 224s Setting up pandoc (3.1.3+ds-2) ... 224s Setting up liblapack-dev:arm64 (3.12.0-3) ... 224s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 224s Setting up pkg-config:arm64 (1.8.1-2) ... 224s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 224s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 224s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 224s Setting up curl (8.5.0-2ubuntu7) ... 224s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 224s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 224s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 224s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 224s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 224s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 224s Setting up fontconfig (2.15.0-1ubuntu1) ... 226s Regenerating fonts cache... done. 226s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 226s Setting up libxft2:arm64 (2.3.6-1) ... 226s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 226s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 226s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 226s Setting up cpp-13 (13.2.0-17ubuntu2) ... 226s Setting up libtk8.6:arm64 (8.6.13-2) ... 226s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 226s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 226s Setting up libreadline-dev:arm64 (8.2-3.1) ... 226s Setting up libcairo2:arm64 (1.18.0-1) ... 226s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 226s Setting up gcc-13 (13.2.0-17ubuntu2) ... 226s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 226s Setting up cpp (4:13.2.0-7ubuntu1) ... 227s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 227s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 227s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 227s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 227s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 227s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 227s Setting up g++-13 (13.2.0-17ubuntu2) ... 227s Setting up libxmu6:arm64 (2:1.1.3-3) ... 227s Setting up libpng-dev:arm64 (1.6.43-3) ... 227s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 227s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 227s Setting up libxaw7:arm64 (2:1.0.14-1) ... 227s Setting up gcc (4:13.2.0-7ubuntu1) ... 227s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 227s Setting up r-base-core (4.3.3-2build1) ... 227s 227s Creating config file /etc/R/Renviron with new version 227s Setting up r-cran-crayon (1.5.2-1) ... 227s Setting up r-cran-sourcetools (0.1.7-1-1) ... 227s Setting up r-cran-futile.options (1.0.1-3build1) ... 227s Setting up r-cran-lattice (0.22-5-1) ... 227s Setting up r-cran-formatr (1.14-1) ... 227s Setting up texlive-binaries (2023.20230311.66589-9) ... 227s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 227s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 227s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 227s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 227s Setting up r-cran-lazyeval (0.2.2-1build1) ... 227s Setting up r-cran-commonmark (1.9.1-1) ... 227s Setting up r-cran-r6 (2.5.1-1) ... 227s Setting up r-cran-pkgkitten (0.2.3-1) ... 227s Setting up texlive-base (2023.20240207-1) ... 229s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 229s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 230s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 230s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 231s Setting up r-cran-magrittr (2.0.3-1) ... 231s Setting up r-cran-rappdirs (0.3.3-1) ... 231s Setting up r-cran-filelock (1.0.3-1) ... 231s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 231s Setting up r-cran-littler (0.3.19-1) ... 231s Setting up r-cran-bh (1.84.0-1) ... 231s Setting up r-cran-fs (1.6.3+dfsg-1) ... 231s Setting up r-cran-rcpp (1.0.12-1) ... 231s Setting up r-cran-curl (5.2.0+dfsg-1) ... 231s Setting up r-cran-codetools (0.2-19-1) ... 231s Setting up r-bioc-biocgenerics (0.48.1-2) ... 231s Setting up r-cran-rlang (1.1.3-1) ... 231s Setting up r-cran-matrixstats (1.2.0-1) ... 231s Setting up littler (0.3.19-1) ... 231s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 231s Setting up r-cran-xfun (0.41+dfsg-1) ... 231s Setting up r-cran-sys (3.4.2-1) ... 231s Setting up r-cran-plogr (0.2.0-3build1) ... 231s Setting up r-cran-withr (2.5.0-1) ... 231s Setting up r-cran-mime (0.12-1) ... 231s Setting up r-cran-generics (0.1.3-1) ... 231s Setting up r-cran-base64enc (0.1-3-3) ... 231s Setting up r-cran-abind (1.4-5-2) ... 231s Setting up r-cran-digest (0.6.34-1) ... 231s Setting up r-cran-yaml (2.3.8-1) ... 231s Setting up r-cran-lambda.r (1.2.4-2build1) ... 231s Setting up r-cran-evaluate (0.23-1) ... 231s Setting up r-cran-dbi (1.2.2-1) ... 231s Setting up r-cran-highr (0.10+dfsg-1) ... 231s Setting up r-cran-fansi (1.0.5-1) ... 231s Setting up r-cran-snow (1:0.4.4-2) ... 231s Setting up r-cran-glue (1.7.0-1) ... 231s Setting up r-cran-bit (4.0.5-1) ... 231s Setting up r-cran-xtable (1:1.8-4-2) ... 231s Setting up r-cran-cli (3.6.2-1) ... 231s Setting up gfortran (4:13.2.0-7ubuntu1) ... 231s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 231s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 231s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 231s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 231s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 231s Setting up r-cran-bitops (1.0-7-1) ... 231s Setting up r-bioc-biocversion (3.18.1-1) ... 231s Setting up r-cran-bit64 (4.0.5-1) ... 231s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 231s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 231s Setting up r-cran-askpass (1.2.0-1) ... 231s Setting up r-cran-fastmap (1.1.1-1) ... 231s Setting up r-cran-png (0.1-8-1) ... 231s Setting up r-bioc-biobase (2.62.0-1) ... 231s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 231s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 231s Setting up r-cran-utf8 (1.2.4-1) ... 231s Setting up r-cran-stringi (1.8.3-1) ... 231s Setting up texlive-latex-base (2023.20240207-1) ... 231s Setting up r-cran-cpp11 (0.4.7-1) ... 231s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 231s Setting up r-cran-futile.logger (1.4.3-4build1) ... 231s Setting up r-cran-later (1.3.2+dfsg-1) ... 231s Setting up r-cran-matrix (1.6-5-1) ... 231s Setting up r-cran-tinytex (0.49-1) ... 231s Setting up r-cran-knitr (1.45+dfsg-1) ... 231s Setting up g++ (4:13.2.0-7ubuntu1) ... 231s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 231s Setting up r-cran-cachem (1.0.8-1) ... 231s Setting up build-essential (12.10ubuntu1) ... 231s Setting up r-bioc-iranges (2.36.0-1) ... 231s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 231s Setting up r-cran-vctrs (0.6.5-1) ... 231s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 231s Setting up r-cran-ellipsis (0.3.2-2) ... 231s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 231s Setting up r-base-dev (4.3.3-2build1) ... 231s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 231s Setting up r-cran-stringr (1.5.1-1) ... 231s Setting up r-bioc-biocparallel (1.36.0-1) ... 231s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 231s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 231s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 231s Setting up texlive-bibtex-extra (2023.20240207-1) ... 231s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 231s Setting up r-cran-httr (1.4.7+dfsg-1) ... 231s Setting up r-cran-memoise (2.0.1-1) ... 231s Setting up r-cran-promises (1.2.1+dfsg-1) ... 231s Setting up r-cran-purrr (1.0.2-1) ... 231s Setting up r-cran-blob (1.2.4-1) ... 231s Setting up r-cran-htmltools (0.5.7-1) ... 231s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 231s Setting up r-bioc-xvector (0.42.0-1) ... 231s Setting up r-cran-sass (0.4.8+dfsg-1) ... 231s Setting up r-cran-dplyr (1.1.4-1) ... 231s Setting up r-cran-rsqlite (2.3.4-1) ... 231s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 231s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 231s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 231s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 231s Setting up r-cran-fontawesome (0.5.2-1) ... 231s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 231s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 231s Setting up r-cran-tidyr (1.3.1-1) ... 231s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 231s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 231s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 231s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 231s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 231s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 231s Setting up r-bioc-annotationdbi (1.64.1-1) ... 231s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 231s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 231s Setting up r-bioc-genomicalignments (1.38.2-1) ... 231s Setting up r-cran-bookdown (0.37+dfsg-1) ... 231s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 231s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 231s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 231s Setting up r-cran-dt (0.31+dfsg-1) ... 231s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 231s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 231s Setting up r-bioc-experimenthub (2.10.0+ds-1) ... 231s Setting up autopkgtest-satdep (0) ... 231s Processing triggers for man-db (2.12.0-3) ... 232s Processing triggers for install-info (7.1-3) ... 232s Processing triggers for libc-bin (2.39-0ubuntu2) ... 232s Processing triggers for tex-common (6.18) ... 233s Running updmap-sys. This may take some time... done. 233s Running mktexlsr /var/lib/texmf ... done. 233s Building format(s) --all. 272s This may take some time... done. 284s (Reading database ... 123731 files and directories currently installed.) 284s Removing autopkgtest-satdep (0) ... 285s autopkgtest [17:34:21]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 285s autopkgtest [17:34:21]: test pkg-r-autopkgtest: [----------------------- 285s Test: Try to load the R library ExperimentHub 286s 286s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 286s Copyright (C) 2024 The R Foundation for Statistical Computing 286s Platform: aarch64-unknown-linux-gnu (64-bit) 286s 286s R is free software and comes with ABSOLUTELY NO WARRANTY. 286s You are welcome to redistribute it under certain conditions. 286s Type 'license()' or 'licence()' for distribution details. 286s 286s R is a collaborative project with many contributors. 286s Type 'contributors()' for more information and 286s 'citation()' on how to cite R or R packages in publications. 286s 286s Type 'demo()' for some demos, 'help()' for on-line help, or 286s 'help.start()' for an HTML browser interface to help. 286s Type 'q()' to quit R. 286s 286s > library('ExperimentHub') 286s Loading required package: BiocGenerics 286s 286s Attaching package: ‘BiocGenerics’ 286s 286s The following objects are masked from ‘package:stats’: 286s 286s IQR, mad, sd, var, xtabs 286s 286s The following objects are masked from ‘package:base’: 286s 286s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 286s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 286s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 286s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 286s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 286s table, tapply, union, unique, unsplit, which.max, which.min 286s 286s Loading required package: AnnotationHub 286s Loading required package: BiocFileCache 286s Loading required package: dbplyr 291s > 291s > 292s Other tests are currently unsupported! 292s They will be progressively added. 292s autopkgtest [17:34:28]: test pkg-r-autopkgtest: -----------------------] 293s autopkgtest [17:34:29]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 293s pkg-r-autopkgtest PASS 293s autopkgtest [17:34:29]: @@@@@@@@@@@@@@@@@@@@ summary 293s pkg-r-autopkgtest PASS 298s Creating nova instance adt-noble-arm64-r-bioc-experimenthub-20240316-172935-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...