0s autopkgtest [21:56:02]: starting date and time: 2024-03-16 21:56:02+0000 0s autopkgtest [21:56:02]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [21:56:02]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5e4cscge/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-curl,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-ensembldb --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-curl/5.2.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-30.secgroup --name adt-noble-arm64-r-bioc-ensembldb-20240316-215602-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 140s autopkgtest [21:58:22]: testbed dpkg architecture: arm64 141s autopkgtest [21:58:23]: testbed apt version: 2.7.12 141s autopkgtest [21:58:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 142s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 143s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 143s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 143s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 144s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3699 kB] 145s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 146s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 146s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 146s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 146s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4018 kB] 146s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 146s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 146s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 158s Fetched 9112 kB in 6s (1479 kB/s) 159s Reading package lists... 167s Reading package lists... 168s Building dependency tree... 168s Reading state information... 170s Calculating upgrade... 171s The following packages will be REMOVED: 171s libssl3 171s The following NEW packages will be installed: 171s libssl3t64 171s The following packages have been kept back: 171s curl 171s The following packages will be upgraded: 171s openssl 171s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 171s Need to get 2753 kB of archives. 171s After this operation, 72.7 kB of additional disk space will be used. 171s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 172s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 174s Fetched 2753 kB in 1s (3515 kB/s) 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 175s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 175s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 176s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 176s wget depends on libssl3 (>= 3.0.0). 176s u-boot-tools depends on libssl3 (>= 3.0.0). 176s tnftp depends on libssl3 (>= 3.0.0). 176s tcpdump depends on libssl3 (>= 3.0.0). 176s systemd-resolved depends on libssl3 (>= 3.0.0). 176s systemd depends on libssl3 (>= 3.0.0). 176s sudo depends on libssl3 (>= 3.0.0). 176s sbsigntool depends on libssl3 (>= 3.0.0). 176s rsync depends on libssl3 (>= 3.0.0). 176s python3-cryptography depends on libssl3 (>= 3.0.0). 176s openssh-server depends on libssl3 (>= 3.0.10). 176s openssh-client depends on libssl3 (>= 3.0.10). 176s mtd-utils depends on libssl3 (>= 3.0.0). 176s mokutil depends on libssl3 (>= 3.0.0). 176s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 176s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 176s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 176s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 176s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 176s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 176s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 176s libnvme1 depends on libssl3 (>= 3.0.0). 176s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 176s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 176s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 176s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 176s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 176s kmod depends on libssl3 (>= 3.0.0). 176s dhcpcd-base depends on libssl3 (>= 3.0.0). 176s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 176s 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 176s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 176s Selecting previously unselected package libssl3t64:arm64. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 176s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 176s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 177s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 177s Setting up openssl (3.0.13-0ubuntu1) ... 177s Processing triggers for man-db (2.12.0-3) ... 179s Processing triggers for libc-bin (2.39-0ubuntu2) ... 181s Reading package lists... 182s Building dependency tree... 182s Reading state information... 184s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 185s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 185s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 185s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 186s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 194s Reading package lists... 194s Reading package lists... 195s Building dependency tree... 195s Reading state information... 197s Calculating upgrade... 198s The following packages have been kept back: 198s curl 198s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 199s Reading package lists... 200s Building dependency tree... 200s Reading state information... 202s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 206s autopkgtest [21:59:28]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 207s autopkgtest [21:59:29]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ensembldb 210s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ensembldb 2.26.0+dfsg-1 (dsc) [2438 B] 210s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ensembldb 2.26.0+dfsg-1 (tar) [1110 kB] 210s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ensembldb 2.26.0+dfsg-1 (diff) [6200 B] 210s gpgv: Signature made Fri Dec 1 04:54:01 2023 UTC 210s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 210s gpgv: issuer "plessy@debian.org" 210s gpgv: Can't check signature: No public key 210s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ensembldb_2.26.0+dfsg-1.dsc: no acceptable signature found 211s autopkgtest [21:59:33]: testing package r-bioc-ensembldb version 2.26.0+dfsg-1 211s autopkgtest [21:59:33]: build not needed 214s autopkgtest [21:59:36]: test pkg-r-autopkgtest: preparing testbed 216s Reading package lists... 216s Building dependency tree... 216s Reading state information... 218s Starting pkgProblemResolver with broken count: 0 218s Starting 2 pkgProblemResolver with broken count: 0 218s Done 220s The following additional packages will be installed: 220s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 220s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 220s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 220s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 220s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 220s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 220s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 220s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 220s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 220s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 220s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 220s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 220s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 220s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 220s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 220s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 220s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 220s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 220s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 220s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 220s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 220s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 220s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 libptexenc1 220s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 220s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 220s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 220s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 220s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 220s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 220s r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 220s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 220s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 220s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 220s r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 220s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 220s r-bioc-ggbio r-bioc-graph r-bioc-gviz r-bioc-interactivedisplaybase 220s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi 220s r-bioc-protgenerics r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools 220s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 220s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 220s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 220s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 220s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom 220s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 220s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 220s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 220s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi 220s r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj 220s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 220s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 220s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 220s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggally 220s r-cran-ggplot2 r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable 220s r-cran-haven r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable 220s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp 220s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 220s r-cran-labeling r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 220s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 220s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 220s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 220s r-cran-openssl r-cran-patchwork r-cran-pillar r-cran-pkgbuild 220s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 220s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 220s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 220s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 220s r-cran-rematch2 r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 220s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 220s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 220s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 220s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 220s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 220s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 220s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 220s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 220s xdg-utils zip zlib1g-dev 220s Suggested packages: 220s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 220s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 220s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 220s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 220s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 220s libboost-context1.83-dev libboost-contract1.83-dev 220s libboost-coroutine1.83-dev libboost-date-time1.83-dev 220s libboost-exception1.83-dev libboost-fiber1.83-dev 220s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 220s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 220s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 220s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 220s libboost-numpy1.83-dev libboost-program-options1.83-dev 220s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 220s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 220s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 220s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 220s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 220s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 220s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 220s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 220s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 220s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 220s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 220s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 220s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-experimenthub 220s r-bioc-all r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach 220s r-cran-bbmisc r-cran-doparallel r-bioc-shortread r-cran-batchtools 220s r-cran-mockery r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter 220s r-cran-lobstr r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 220s r-cran-markdown r-bioc-dexseq r-cran-sparsem r-bioc-sparsematrixstats 220s r-bioc-limma r-bioc-rhdf5 r-bioc-snpstats r-cran-roxygen2 r-cran-ff 220s r-cran-covr r-cran-aer r-cran-bbmle r-cran-boot r-cran-car r-cran-cardata 220s r-cran-caret r-cran-cmprsk r-cran-coda r-cran-e1071 r-cran-emmeans 220s r-cran-epir r-cran-gam r-cran-gee r-cran-geepack r-cran-glmnet r-cran-gmm 220s r-cran-irlba r-cran-ks r-cran-lavaan r-cran-leaps r-cran-lme4 r-cran-lmtest 220s r-cran-lsmeans r-cran-maps r-cran-mclust r-cran-metafor r-cran-modeldata 220s r-cran-multcomp r-cran-network r-cran-ordinal r-cran-plm r-cran-psych 220s r-cran-quantreg r-cran-robust r-cran-robustbase r-cran-rsample 220s r-cran-sandwich r-cran-sp r-cran-spdep r-cran-spatialreg r-cran-spelling 220s r-cran-survey r-cran-systemfit r-cran-tseries r-cran-zoo r-cran-kernsmooth 220s r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-rmysql 220s r-cran-polyclip r-cran-lubridate r-cran-scatterplot3d r-cran-magick 220s r-cran-sf r-cran-getopt r-cran-formattable r-cran-nanotime 220s r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 220s r-cran-rlecuyer r-cran-bench r-cran-here debhelper ghostscript gv 220s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 220s hintview texlive-latex-base-doc wp2latex 220s Recommended packages: 220s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 220s r-recommended r-doc-html r-cran-remotes r-cran-downlit r-cran-miniui 220s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-covr 220s r-cran-brms r-cran-broom.mixed r-cran-cmprsk r-cran-effects r-cran-emmeans 220s r-cran-gam r-cran-gee r-cran-geepack r-cran-ggeffects r-cran-glmmtmb 220s r-cran-lavaan r-cran-lme4 r-cran-mice r-cran-ordinal r-cran-parameters 220s r-cran-plm r-cran-pscl r-cran-rstanarm r-cran-spelling r-cran-survey 220s r-cran-vgam r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-fastmatch 220s r-cran-devtools r-cran-tinytest r-cran-whoami r-cran-bench r-cran-decor 220s r-cran-lobstr r-cran-webutils r-cran-r.utils r-cran-xts r-cran-nanotime 220s r-cran-zoo r-cran-rpostgresql r-cran-gh r-cran-rmysql r-cran-future w3m 220s | www-browser r-cran-unitizer r-cran-rsvg r-cran-geosphere r-cran-ggforce 220s r-cran-igraph r-cran-intergraph r-cran-maps r-cran-mapproj r-cran-network 220s r-cran-sna r-cran-roxygen2 r-cran-vdiffr r-cran-hexbin r-cran-multcomp 220s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-sf r-cran-svglite 220s r-cran-reshape r-cran-cairo r-cran-markdown r-cran-r.rsp r-cran-gridsvg 220s r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 220s node-highlight.js r-cran-snakecase r-cran-lintr r-cran-tidyverse 220s r-cran-r.devices r-cran-sodium r-cran-gridgraphics r-cran-lubridate 220s r-cran-mathjaxr r-cran-mockr r-cran-doparallel r-cran-foreach 220s r-cran-iterators r-cran-itertools r-cran-webfakes r-cran-pingr r-cran-runit 220s r-cran-usethis r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-rvest 220s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 220s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 220s x11-xserver-utils 221s The following packages will be REMOVED: 221s libcurl4 libpsl5 221s The following NEW packages will be installed: 221s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 221s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 221s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 221s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 221s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 221s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 221s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 221s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 221s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 221s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 221s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 221s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 221s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 221s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 221s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 221s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 221s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 221s libjs-popper.js libjs-prettify libjs-sifter.js 221s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 221s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 221s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 221s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 221s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 221s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 221s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 221s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 221s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 221s libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 221s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 221s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 221s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 221s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 221s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 221s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 221s r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 221s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 221s r-bioc-ggbio r-bioc-graph r-bioc-gviz r-bioc-interactivedisplaybase 221s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi 221s r-bioc-protgenerics r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools 221s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 221s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 221s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 221s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 221s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom 221s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 221s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 221s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 221s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi 221s r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj 221s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 221s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 221s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 221s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggally 221s r-cran-ggplot2 r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable 221s r-cran-haven r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable 221s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp 221s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 221s r-cran-labeling r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 221s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 221s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 221s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 221s r-cran-openssl r-cran-patchwork r-cran-pillar r-cran-pkgbuild 221s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 221s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 221s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 221s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 221s r-cran-rematch2 r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 221s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 221s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 221s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 221s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 221s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 221s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 221s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 221s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 221s xdg-utils zip zlib1g-dev 221s The following packages will be upgraded: 221s curl 221s 1 upgraded, 357 newly installed, 2 to remove and 0 not upgraded. 221s Need to get 500 MB/500 MB of archives. 221s After this operation, 1472 MB of additional disk space will be used. 221s Get:1 /tmp/autopkgtest.ehKAhh/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [800 B] 221s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 221s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 221s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 222s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 222s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 222s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 222s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 222s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 222s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 222s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 222s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 222s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 222s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 222s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 222s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 222s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 222s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 223s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 223s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 223s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 223s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 223s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 223s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 223s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 223s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 223s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 223s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 224s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 224s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 224s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 224s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 224s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 225s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 225s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 225s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 225s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 225s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 225s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 225s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 225s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 225s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 225s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 225s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 225s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 225s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 226s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 226s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 226s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 226s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 226s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 226s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 226s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 226s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 227s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 227s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 227s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 227s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 227s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 227s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 227s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 228s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 228s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 228s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 228s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 228s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 228s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 228s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 228s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 228s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 228s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 228s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 228s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 228s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 228s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 229s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 229s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 229s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 229s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 229s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 229s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 229s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 229s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 229s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 229s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 229s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 229s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 229s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 229s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 229s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 229s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 229s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 229s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 229s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 229s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 229s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 229s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 229s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 229s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 229s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 229s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 229s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 230s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 230s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 230s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 230s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 230s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 230s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 230s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 230s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 230s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 230s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 230s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 230s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 230s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 230s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 230s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 230s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 230s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 230s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 230s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 230s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 230s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 230s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 230s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 230s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 230s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 230s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 230s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 230s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 230s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 230s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 230s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 230s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 230s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 230s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 230s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 230s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 231s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 231s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 231s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 231s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 232s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 232s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 232s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 232s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 232s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 232s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 232s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 233s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 233s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 233s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 233s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 233s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 233s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 233s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 233s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 233s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 233s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 233s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 233s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 233s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 233s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 233s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 234s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 234s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 234s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 234s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 234s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 234s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 234s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 234s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 234s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1build1 [176 kB] 234s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 234s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 234s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 234s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 234s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 234s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 234s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 234s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 234s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 234s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 234s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 234s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 234s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 235s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 235s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 235s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 235s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 235s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 235s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 236s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 236s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 236s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 236s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 236s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 236s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 236s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 236s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 236s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 236s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 236s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 236s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 236s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 236s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 237s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 237s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 237s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 237s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 237s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 237s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 237s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 237s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 237s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 237s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 237s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 237s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 237s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 237s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 237s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 238s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 238s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 238s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 238s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 238s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 238s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 238s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 238s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 238s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 238s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 238s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 238s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 238s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 238s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 238s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 238s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 238s Get:238 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 239s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 239s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 239s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 239s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 239s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 239s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 239s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 239s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 239s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 239s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 239s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 239s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 239s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 239s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 239s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 239s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 239s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 239s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 239s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 239s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 239s Get:259 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 239s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 240s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 241s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 241s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 244s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 244s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 245s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 245s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 245s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 245s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 245s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 245s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 245s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 245s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 245s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 245s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 245s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 245s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 245s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 245s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 245s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 245s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 245s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 245s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 245s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 246s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 246s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 246s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 246s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 246s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nnet arm64 7.3-19-2 [111 kB] 246s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreign arm64 0.8.86-1 [240 kB] 246s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 246s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 246s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 246s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 246s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 246s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltable all 2.4.2-1 [381 kB] 246s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 247s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 247s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-chron arm64 2.3-61-2 [186 kB] 247s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 247s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 247s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 247s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 247s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 247s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-acepack arm64 1.4.2-1 [60.5 kB] 247s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hmisc arm64 5.1-1-1 [3486 kB] 248s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 248s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 248s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 248s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 248s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 248s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 248s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 248s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 248s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 248s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 248s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 249s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 249s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 249s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 249s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 249s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 249s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 249s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 249s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 250s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biovizbase arm64 1.50.0-1 [2665 kB] 250s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 250s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 250s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 250s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rbgl arm64 1.78.0+dfsg-1 [541 kB] 250s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 250s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 250s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-forcats all 1.0.0-1 [369 kB] 250s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 250s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 250s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 250s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 250s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-haven arm64 2.5.4-1 [338 kB] 250s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labelled all 2.12.0-2 [312 kB] 250s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom.helpers all 1.14.0-2 [557 kB] 250s Get:341 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-patchwork all 1.2.0-1 [3161 kB] 250s Get:342 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggstats all 0.5.1-2 [839 kB] 250s Get:343 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggally all 2.2.1-1 [2022 kB] 250s Get:344 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ggbio all 1.50.0-1 [2939 kB] 250s Get:345 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 251s Get:346 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 251s Get:347 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 251s Get:348 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 251s Get:349 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 251s Get:350 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 251s Get:351 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 251s Get:352 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 251s Get:353 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 251s Get:354 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 251s Get:355 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 251s Get:356 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 251s Get:357 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 251s Get:358 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 256s Preconfiguring packages ... 256s Fetched 500 MB in 30s (16.6 MB/s) 256s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 256s wget depends on libpsl5 (>= 0.16.0). 256s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 256s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 256s 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75852 files and directories currently installed.) 256s Removing libpsl5:arm64 (0.21.2-1build1) ... 256s Selecting previously unselected package libpsl5t64:arm64. 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75847 files and directories currently installed.) 257s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 257s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 257s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 257s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75853 files and directories currently installed.) 257s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 257s Selecting previously unselected package libcurl4t64:arm64. 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75848 files and directories currently installed.) 257s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 257s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 257s Selecting previously unselected package libc-dev-bin. 257s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 257s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 257s Selecting previously unselected package linux-libc-dev:arm64. 257s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 257s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 258s Selecting previously unselected package libcrypt-dev:arm64. 258s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 258s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 258s Selecting previously unselected package libtirpc-dev:arm64. 258s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 258s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 258s Selecting previously unselected package libnsl-dev:arm64. 259s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 259s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 259s Selecting previously unselected package rpcsvc-proto. 259s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 259s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 259s Selecting previously unselected package libc6-dev:arm64. 259s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 259s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 259s Selecting previously unselected package libisl23:arm64. 259s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 259s Unpacking libisl23:arm64 (0.26-3) ... 259s Selecting previously unselected package libmpc3:arm64. 259s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 259s Unpacking libmpc3:arm64 (1.3.1-1) ... 260s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 260s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 260s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 260s Selecting previously unselected package cpp-13. 260s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 260s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 260s Selecting previously unselected package cpp-aarch64-linux-gnu. 260s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 260s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 260s Selecting previously unselected package cpp. 261s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 261s Unpacking cpp (4:13.2.0-7ubuntu1) ... 261s Selecting previously unselected package libcc1-0:arm64. 261s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 261s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 261s Selecting previously unselected package libgomp1:arm64. 261s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 261s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 261s Selecting previously unselected package libitm1:arm64. 261s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 261s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 261s Selecting previously unselected package libatomic1:arm64. 261s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 261s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 261s Selecting previously unselected package libasan8:arm64. 261s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 261s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 261s Selecting previously unselected package liblsan0:arm64. 261s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 261s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 262s Selecting previously unselected package libtsan2:arm64. 262s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 262s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 262s Selecting previously unselected package libubsan1:arm64. 262s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 262s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 262s Selecting previously unselected package libhwasan0:arm64. 262s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 262s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 262s Selecting previously unselected package libgcc-13-dev:arm64. 262s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 262s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 263s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 263s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 263s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 264s Selecting previously unselected package gcc-13. 264s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 264s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 264s Selecting previously unselected package gcc-aarch64-linux-gnu. 264s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 264s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 265s Selecting previously unselected package gcc. 265s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 265s Unpacking gcc (4:13.2.0-7ubuntu1) ... 265s Selecting previously unselected package libstdc++-13-dev:arm64. 265s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 265s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 266s Selecting previously unselected package g++-13-aarch64-linux-gnu. 266s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 266s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 266s Selecting previously unselected package g++-13. 266s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 266s Unpacking g++-13 (13.2.0-17ubuntu2) ... 267s Selecting previously unselected package g++-aarch64-linux-gnu. 267s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 267s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 267s Selecting previously unselected package g++. 267s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 267s Unpacking g++ (4:13.2.0-7ubuntu1) ... 267s Selecting previously unselected package build-essential. 267s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 267s Unpacking build-essential (12.10ubuntu1) ... 267s Selecting previously unselected package dctrl-tools. 267s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 267s Unpacking dctrl-tools (2.24-3build2) ... 267s Selecting previously unselected package fonts-dejavu-mono. 267s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 267s Unpacking fonts-dejavu-mono (2.37-8) ... 267s Selecting previously unselected package fonts-dejavu-core. 267s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 267s Unpacking fonts-dejavu-core (2.37-8) ... 267s Selecting previously unselected package fontconfig-config. 268s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 268s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 268s Selecting previously unselected package libfontconfig1:arm64. 268s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 268s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 269s Selecting previously unselected package fontconfig. 269s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 269s Unpacking fontconfig (2.15.0-1ubuntu1) ... 269s Selecting previously unselected package fonts-font-awesome. 269s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 269s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 269s Selecting previously unselected package fonts-glyphicons-halflings. 269s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 269s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 269s Selecting previously unselected package fonts-lmodern. 269s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 269s Unpacking fonts-lmodern (2.005-1) ... 269s Selecting previously unselected package fonts-mathjax. 269s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 269s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 270s Selecting previously unselected package libgfortran5:arm64. 270s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 270s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 270s Selecting previously unselected package libgfortran-13-dev:arm64. 270s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 270s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 270s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 270s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 270s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 271s Selecting previously unselected package gfortran-13. 271s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 271s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 271s Selecting previously unselected package gfortran-aarch64-linux-gnu. 271s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 271s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 271s Selecting previously unselected package gfortran. 272s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 272s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 272s Selecting previously unselected package icu-devtools. 272s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 272s Unpacking icu-devtools (74.2-1ubuntu1) ... 272s Selecting previously unselected package javascript-common. 272s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 272s Unpacking javascript-common (11+nmu1) ... 272s Selecting previously unselected package libio-string-perl. 272s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 272s Unpacking libio-string-perl (1.08-4) ... 272s Selecting previously unselected package liblatex-tounicode-perl. 272s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 272s Unpacking liblatex-tounicode-perl (0.54-2) ... 272s Selecting previously unselected package libbibtex-parser-perl. 272s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 272s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 272s Selecting previously unselected package libblas3:arm64. 272s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 272s Unpacking libblas3:arm64 (3.12.0-3) ... 272s Selecting previously unselected package libblas-dev:arm64. 272s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 272s Unpacking libblas-dev:arm64 (3.12.0-3) ... 272s Selecting previously unselected package libboost1.83-dev:arm64. 272s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 272s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 285s Selecting previously unselected package libboost-dev:arm64. 285s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 285s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 285s Selecting previously unselected package libbz2-dev:arm64. 285s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 285s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 285s Selecting previously unselected package libpixman-1-0:arm64. 285s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 285s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 285s Selecting previously unselected package libxcb-render0:arm64. 286s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 286s Unpacking libxcb-render0:arm64 (1.15-1) ... 286s Selecting previously unselected package libxcb-shm0:arm64. 286s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 286s Unpacking libxcb-shm0:arm64 (1.15-1) ... 286s Selecting previously unselected package libxrender1:arm64. 286s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 286s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 286s Selecting previously unselected package libcairo2:arm64. 286s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 286s Unpacking libcairo2:arm64 (1.18.0-1) ... 286s Selecting previously unselected package libdatrie1:arm64. 286s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 286s Unpacking libdatrie1:arm64 (0.2.13-3) ... 286s Selecting previously unselected package libdeflate0:arm64. 286s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 286s Unpacking libdeflate0:arm64 (1.19-1) ... 286s Selecting previously unselected package libgraphite2-3:arm64. 286s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 286s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 286s Selecting previously unselected package libharfbuzz0b:arm64. 286s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 286s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 286s Selecting previously unselected package x11-common. 287s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 287s Unpacking x11-common (1:7.7+23ubuntu2) ... 287s Selecting previously unselected package libice6:arm64. 287s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 287s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 287s Selecting previously unselected package libicu-dev:arm64. 287s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 287s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 289s Selecting previously unselected package libjpeg-turbo8:arm64. 289s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 289s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 289s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 289s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 289s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 289s Selecting previously unselected package libjpeg8:arm64. 289s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 289s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 289s Selecting previously unselected package libjpeg8-dev:arm64. 289s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 289s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 289s Selecting previously unselected package libjpeg-dev:arm64. 289s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 289s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 289s Selecting previously unselected package libjs-bootstrap. 289s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 289s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 289s Selecting previously unselected package libjs-popper.js. 289s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 289s Unpacking libjs-popper.js (1.16.1+ds-6) ... 290s Selecting previously unselected package libjs-bootstrap4. 290s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 290s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 290s Selecting previously unselected package libjs-d3. 290s 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unselected package libjs-json. 292s Preparing to unpack .../090-libjs-json_0~20221030+~1.0.8-1_all.deb ... 292s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 292s Selecting previously unselected package libjs-lunr. 292s Preparing to unpack .../091-libjs-lunr_2.3.9~dfsg-2_all.deb ... 292s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 292s Selecting previously unselected package libjs-prettify. 292s Preparing to unpack .../092-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 292s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 292s Selecting previously unselected package libkpathsea6:arm64. 292s Preparing to unpack .../093-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 292s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 292s Selecting previously unselected package liblapack3:arm64. 292s Preparing to unpack .../094-liblapack3_3.12.0-3_arm64.deb ... 292s Unpacking liblapack3:arm64 (3.12.0-3) ... 293s Selecting previously unselected package liblapack-dev:arm64. 293s Preparing to unpack .../095-liblapack-dev_3.12.0-3_arm64.deb ... 293s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 293s Selecting previously unselected package liblerc4:arm64. 293s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 293s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 294s Selecting previously unselected package liblua5.4-0:arm64. 294s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_arm64.deb ... 294s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 294s Selecting previously unselected package libncurses-dev:arm64. 294s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 294s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 294s Selecting previously unselected package libthai-data. 294s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 294s Unpacking libthai-data (0.1.29-2) ... 294s Selecting previously unselected package libthai0:arm64. 294s Preparing to unpack .../100-libthai0_0.1.29-2_arm64.deb ... 294s Unpacking libthai0:arm64 (0.1.29-2) ... 294s Selecting previously unselected package libpango-1.0-0:arm64. 294s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 294s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 294s Selecting previously unselected package libpangoft2-1.0-0:arm64. 294s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 294s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 294s Selecting previously unselected package libpangocairo-1.0-0:arm64. 294s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 294s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 294s Selecting previously unselected package libpaper1:arm64. 295s Preparing to unpack .../104-libpaper1_1.1.29_arm64.deb ... 295s Unpacking libpaper1:arm64 (1.1.29) ... 295s Selecting previously unselected package libpaper-utils. 295s Preparing to unpack .../105-libpaper-utils_1.1.29_arm64.deb ... 295s Unpacking libpaper-utils (1.1.29) ... 295s Selecting previously unselected package libpcre2-16-0:arm64. 295s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 295s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 295s Selecting previously unselected package libpcre2-32-0:arm64. 295s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 295s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 295s Selecting previously unselected package libpcre2-posix3:arm64. 295s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 295s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 295s Selecting previously unselected package libpcre2-dev:arm64. 295s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 295s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 295s Selecting previously unselected package libpkgconf3:arm64. 295s Preparing to unpack .../110-libpkgconf3_1.8.1-2_arm64.deb ... 295s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 295s Selecting previously unselected package zlib1g-dev:arm64. 295s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 295s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 296s Selecting previously unselected package libpng-dev:arm64. 296s Preparing to unpack .../112-libpng-dev_1.6.43-1_arm64.deb ... 296s Unpacking libpng-dev:arm64 (1.6.43-1) ... 296s Selecting previously unselected package libpotrace0:arm64. 296s Preparing to unpack .../113-libpotrace0_1.16-2_arm64.deb ... 296s Unpacking libpotrace0:arm64 (1.16-2) ... 296s Selecting previously unselected package libptexenc1:arm64. 296s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_arm64.deb ... 296s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 296s Selecting previously unselected package libreadline-dev:arm64. 296s Preparing to unpack .../115-libreadline-dev_8.2-3_arm64.deb ... 296s Unpacking libreadline-dev:arm64 (8.2-3) ... 296s Selecting previously unselected package libsharpyuv0:arm64. 296s Preparing to unpack .../116-libsharpyuv0_1.3.2-0.4_arm64.deb ... 296s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 296s Selecting previously unselected package libsm6:arm64. 296s Preparing to unpack .../117-libsm6_2%3a1.2.3-1build2_arm64.deb ... 296s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 296s Selecting previously unselected package libsynctex2:arm64. 296s Preparing to unpack .../118-libsynctex2_2023.20230311.66589-9_arm64.deb ... 296s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 296s Selecting previously unselected package libtcl8.6:arm64. 296s Preparing to unpack .../119-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 296s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 297s Selecting previously unselected package libteckit0:arm64. 297s Preparing to unpack .../120-libteckit0_2.5.12+ds1-1_arm64.deb ... 297s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 297s Selecting previously unselected package libtexlua53-5:arm64. 297s Preparing to unpack .../121-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 297s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 297s Selecting previously unselected package libjbig0:arm64. 297s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 297s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 297s Selecting previously unselected package libwebp7:arm64. 297s Preparing to unpack .../123-libwebp7_1.3.2-0.4_arm64.deb ... 297s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 297s Selecting previously unselected package libtiff6:arm64. 297s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 297s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 297s Selecting previously unselected package libxft2:arm64. 297s Preparing to unpack .../125-libxft2_2.3.6-1_arm64.deb ... 297s Unpacking libxft2:arm64 (2.3.6-1) ... 297s Selecting previously unselected package libxss1:arm64. 298s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_arm64.deb ... 298s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 298s Selecting previously unselected package libtk8.6:arm64. 298s Preparing to unpack .../127-libtk8.6_8.6.13-2_arm64.deb ... 298s Unpacking libtk8.6:arm64 (8.6.13-2) ... 298s Selecting previously unselected package libxt6:arm64. 298s Preparing to unpack .../128-libxt6_1%3a1.2.1-1.1_arm64.deb ... 298s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 298s Selecting previously unselected package libxmu6:arm64. 298s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_arm64.deb ... 298s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 298s Selecting previously unselected package libxpm4:arm64. 298s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_arm64.deb ... 298s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 298s Selecting previously unselected package libxaw7:arm64. 298s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_arm64.deb ... 298s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 298s Selecting previously unselected package libxi6:arm64. 298s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_arm64.deb ... 298s Unpacking libxi6:arm64 (2:1.8.1-1) ... 298s Selecting previously unselected package libzzip-0-13:arm64. 299s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 299s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 299s Selecting previously unselected package node-bootstrap-sass. 299s Preparing to unpack .../134-node-bootstrap-sass_3.4.3-2_all.deb ... 299s Unpacking node-bootstrap-sass (3.4.3-2) ... 299s Selecting previously unselected package node-html5shiv. 299s Preparing to unpack .../135-node-html5shiv_3.7.3+dfsg-5_all.deb ... 299s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 299s Selecting previously unselected package node-normalize.css. 299s Preparing to unpack .../136-node-normalize.css_8.0.1-5_all.deb ... 299s Unpacking node-normalize.css (8.0.1-5) ... 299s Selecting previously unselected package pandoc-data. 299s Preparing to unpack .../137-pandoc-data_3.1.3-1_all.deb ... 299s Unpacking pandoc-data (3.1.3-1) ... 300s Selecting previously unselected package pandoc. 300s Preparing to unpack .../138-pandoc_3.1.3+ds-2_arm64.deb ... 300s Unpacking pandoc (3.1.3+ds-2) ... 303s Selecting previously unselected package pkgconf-bin. 303s Preparing to unpack .../139-pkgconf-bin_1.8.1-2_arm64.deb ... 303s Unpacking pkgconf-bin (1.8.1-2) ... 303s Selecting previously unselected package pkgconf:arm64. 304s Preparing to unpack .../140-pkgconf_1.8.1-2_arm64.deb ... 304s Unpacking pkgconf:arm64 (1.8.1-2) ... 304s Selecting previously unselected package pkg-config:arm64. 304s Preparing to unpack .../141-pkg-config_1.8.1-2_arm64.deb ... 304s Unpacking pkg-config:arm64 (1.8.1-2) ... 304s Selecting previously unselected package zip. 304s Preparing to unpack .../142-zip_3.0-13_arm64.deb ... 304s Unpacking zip (3.0-13) ... 304s Selecting previously unselected package unzip. 304s Preparing to unpack .../143-unzip_6.0-28ubuntu3_arm64.deb ... 304s Unpacking unzip (6.0-28ubuntu3) ... 304s Selecting previously unselected package xdg-utils. 304s Preparing to unpack .../144-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 304s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 304s Selecting previously unselected package r-base-core. 304s Preparing to unpack .../145-r-base-core_4.3.2-1build1_arm64.deb ... 304s Unpacking r-base-core (4.3.2-1build1) ... 306s Selecting previously unselected package liblzma-dev:arm64. 306s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 306s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 306s Selecting previously unselected package r-base-dev. 306s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ... 306s Unpacking r-base-dev (4.3.2-1build1) ... 306s Selecting previously unselected package pkg-r-autopkgtest. 306s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 306s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 306s Selecting previously unselected package r-bioc-biocgenerics. 306s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 306s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 307s Selecting previously unselected package r-bioc-biobase. 307s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 307s Unpacking r-bioc-biobase (2.62.0-1) ... 307s Selecting previously unselected package r-bioc-s4vectors. 307s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 307s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 307s Selecting previously unselected package r-bioc-iranges. 307s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 307s Unpacking r-bioc-iranges (2.36.0-1) ... 307s Selecting previously unselected package r-cran-dbi. 307s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 307s Unpacking r-cran-dbi (1.2.2-1) ... 308s Selecting previously unselected package r-cran-bit. 308s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 308s Unpacking r-cran-bit (4.0.5-1) ... 308s Selecting previously unselected package r-cran-bit64. 308s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 308s Unpacking r-cran-bit64 (4.0.5-1) ... 308s Selecting previously unselected package r-cran-rlang. 308s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 308s Unpacking r-cran-rlang (1.1.3-1) ... 308s Selecting previously unselected package r-cran-cli. 308s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 308s Unpacking r-cran-cli (3.6.2-1) ... 308s Selecting previously unselected package r-cran-glue. 309s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 309s Unpacking r-cran-glue (1.7.0-1) ... 309s Selecting previously unselected package r-cran-lifecycle. 309s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 309s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 309s Selecting previously unselected package r-cran-vctrs. 309s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 309s Unpacking r-cran-vctrs (0.6.5-1) ... 309s Selecting previously unselected package r-cran-blob. 309s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 309s Unpacking r-cran-blob (1.2.4-1) ... 309s Selecting previously unselected package r-cran-fastmap. 309s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 309s Unpacking r-cran-fastmap (1.1.1-1) ... 309s Selecting previously unselected package r-cran-cachem. 309s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 309s Unpacking r-cran-cachem (1.0.8-1) ... 310s Selecting previously unselected package r-cran-memoise. 310s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 310s Unpacking r-cran-memoise (2.0.1-1) ... 310s Selecting previously unselected package r-cran-pkgconfig. 310s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 310s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 310s Selecting previously unselected package r-cran-plogr. 310s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 310s Unpacking r-cran-plogr (0.2.0-3build1) ... 310s Selecting previously unselected package r-cran-cpp11. 310s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 310s Unpacking r-cran-cpp11 (0.4.7-1) ... 310s Selecting previously unselected package r-cran-rsqlite. 310s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 310s Unpacking r-cran-rsqlite (2.3.4-1) ... 310s Selecting previously unselected package r-cran-curl. 310s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1build1_arm64.deb ... 310s Unpacking r-cran-curl (5.2.0+dfsg-1build1) ... 311s Selecting previously unselected package r-cran-jsonlite. 311s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 311s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 311s Selecting previously unselected package r-cran-mime. 311s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 311s Unpacking r-cran-mime (0.12-1) ... 311s Selecting previously unselected package r-cran-sys. 311s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 311s Unpacking r-cran-sys (3.4.2-1) ... 311s Selecting previously unselected package r-cran-askpass. 311s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 311s Unpacking r-cran-askpass (1.2.0-1) ... 311s Selecting previously unselected package r-cran-openssl. 311s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 311s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 311s Selecting previously unselected package r-cran-r6. 311s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 311s Unpacking r-cran-r6 (2.5.1-1) ... 311s Selecting previously unselected package r-cran-httr. 311s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 311s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 312s Selecting previously unselected package r-cran-png. 312s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 312s Unpacking r-cran-png (0.1-8-1) ... 312s Selecting previously unselected package r-bioc-zlibbioc. 312s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 312s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 312s Selecting previously unselected package r-bioc-xvector. 312s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 312s Unpacking r-bioc-xvector (0.42.0-1) ... 312s Selecting previously unselected package r-cran-bitops. 312s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 312s Unpacking r-cran-bitops (1.0-7-1) ... 312s Selecting previously unselected package r-cran-rcurl. 312s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 312s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 312s Selecting previously unselected package r-bioc-genomeinfodbdata. 312s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 312s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 313s Selecting previously unselected package r-bioc-genomeinfodb. 313s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 313s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 313s Selecting previously unselected package r-cran-crayon. 313s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 313s Unpacking r-cran-crayon (1.5.2-1) ... 313s Selecting previously unselected package r-bioc-biostrings. 313s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 313s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 314s Selecting previously unselected package r-bioc-keggrest. 314s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 314s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 314s Selecting previously unselected package r-bioc-annotationdbi. 314s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 314s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 314s Selecting previously unselected package r-bioc-genomicranges. 314s Preparing to unpack .../188-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 314s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 315s Selecting previously unselected package r-cran-lazyeval. 315s Preparing to unpack .../189-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 315s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 315s Selecting previously unselected package r-bioc-annotationfilter. 315s Preparing to unpack .../190-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 315s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 315s Selecting previously unselected package r-cran-generics. 315s Preparing to unpack .../191-r-cran-generics_0.1.3-1_all.deb ... 315s Unpacking r-cran-generics (0.1.3-1) ... 316s Selecting previously unselected package r-cran-magrittr. 316s Preparing to unpack .../192-r-cran-magrittr_2.0.3-1_arm64.deb ... 316s Unpacking r-cran-magrittr (2.0.3-1) ... 316s Selecting previously unselected package r-cran-fansi. 316s Preparing to unpack .../193-r-cran-fansi_1.0.5-1_arm64.deb ... 316s Unpacking r-cran-fansi (1.0.5-1) ... 316s Selecting previously unselected package r-cran-utf8. 316s Preparing to unpack .../194-r-cran-utf8_1.2.4-1_arm64.deb ... 316s Unpacking r-cran-utf8 (1.2.4-1) ... 316s Selecting previously unselected package r-cran-pillar. 316s Preparing to unpack .../195-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 316s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 316s Selecting previously unselected package r-cran-tibble. 316s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 316s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 317s Selecting previously unselected package r-cran-withr. 317s Preparing to unpack .../197-r-cran-withr_2.5.0-1_all.deb ... 317s Unpacking r-cran-withr (2.5.0-1) ... 317s Selecting previously unselected package r-cran-tidyselect. 317s Preparing to unpack .../198-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 317s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 317s Selecting previously unselected package r-cran-dplyr. 317s Preparing to unpack .../199-r-cran-dplyr_1.1.4-1_arm64.deb ... 317s Unpacking r-cran-dplyr (1.1.4-1) ... 317s Selecting previously unselected package r-cran-purrr. 317s Preparing to unpack .../200-r-cran-purrr_1.0.2-1_arm64.deb ... 317s Unpacking r-cran-purrr (1.0.2-1) ... 318s Selecting previously unselected package r-cran-stringi. 318s Preparing to unpack .../201-r-cran-stringi_1.8.3-1_arm64.deb ... 318s Unpacking r-cran-stringi (1.8.3-1) ... 318s Selecting previously unselected package r-cran-stringr. 318s Preparing to unpack .../202-r-cran-stringr_1.5.1-1_all.deb ... 318s Unpacking r-cran-stringr (1.5.1-1) ... 318s Selecting previously unselected package r-cran-tidyr. 318s Preparing to unpack .../203-r-cran-tidyr_1.3.1-1_arm64.deb ... 318s Unpacking r-cran-tidyr (1.3.1-1) ... 318s Selecting previously unselected package r-cran-dbplyr. 318s Preparing to unpack .../204-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 318s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 318s Selecting previously unselected package r-cran-filelock. 318s Preparing to unpack .../205-r-cran-filelock_1.0.3-1_arm64.deb ... 318s Unpacking r-cran-filelock (1.0.3-1) ... 318s Selecting previously unselected package r-bioc-biocfilecache. 319s Preparing to unpack .../206-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 319s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 319s Selecting previously unselected package r-cran-biocmanager. 319s Preparing to unpack .../207-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 319s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 319s Selecting previously unselected package r-bioc-biocversion. 319s Preparing to unpack .../208-r-bioc-biocversion_3.18.1-1_all.deb ... 319s Unpacking r-bioc-biocversion (3.18.1-1) ... 319s Selecting previously unselected package r-cran-rappdirs. 319s Preparing to unpack .../209-r-cran-rappdirs_0.3.3-1_arm64.deb ... 319s Unpacking r-cran-rappdirs (0.3.3-1) ... 319s Selecting previously unselected package r-cran-yaml. 319s Preparing to unpack .../210-r-cran-yaml_2.3.8-1_arm64.deb ... 319s Unpacking r-cran-yaml (2.3.8-1) ... 319s Selecting previously unselected package r-cran-littler. 319s Preparing to unpack .../211-r-cran-littler_0.3.19-1_arm64.deb ... 319s Unpacking r-cran-littler (0.3.19-1) ... 319s Selecting previously unselected package r-cran-pkgkitten. 319s Preparing to unpack .../212-r-cran-pkgkitten_0.2.3-1_all.deb ... 319s Unpacking r-cran-pkgkitten (0.2.3-1) ... 320s Selecting previously unselected package r-cran-rcpp. 320s Preparing to unpack .../213-r-cran-rcpp_1.0.12-1_arm64.deb ... 320s Unpacking r-cran-rcpp (1.0.12-1) ... 320s Selecting previously unselected package r-cran-later. 320s Preparing to unpack .../214-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 320s Unpacking r-cran-later (1.3.2+dfsg-1) ... 320s Selecting previously unselected package r-cran-promises. 320s Preparing to unpack .../215-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 320s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 321s Selecting previously unselected package r-cran-httpuv. 321s Preparing to unpack .../216-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 321s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 321s Selecting previously unselected package r-cran-xtable. 321s Preparing to unpack .../217-r-cran-xtable_1%3a1.8-4-2_all.deb ... 321s Unpacking r-cran-xtable (1:1.8-4-2) ... 321s Selecting previously unselected package r-cran-base64enc. 321s Preparing to unpack .../218-r-cran-base64enc_0.1-3-3_arm64.deb ... 321s Unpacking r-cran-base64enc (0.1-3-3) ... 321s Selecting previously unselected package r-cran-digest. 321s Preparing to unpack .../219-r-cran-digest_0.6.34-1_arm64.deb ... 321s Unpacking r-cran-digest (0.6.34-1) ... 321s Selecting previously unselected package r-cran-ellipsis. 321s Preparing to unpack .../220-r-cran-ellipsis_0.3.2-2_arm64.deb ... 321s Unpacking r-cran-ellipsis (0.3.2-2) ... 321s Selecting previously unselected package r-cran-htmltools. 321s Preparing to unpack .../221-r-cran-htmltools_0.5.7-1_arm64.deb ... 321s Unpacking r-cran-htmltools (0.5.7-1) ... 321s Selecting previously unselected package r-cran-fontawesome. 321s Preparing to unpack .../222-r-cran-fontawesome_0.5.2-1_all.deb ... 322s Unpacking r-cran-fontawesome (0.5.2-1) ... 322s Selecting previously unselected package r-cran-sourcetools. 322s Preparing to unpack .../223-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 322s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 322s Selecting previously unselected package r-cran-commonmark. 322s Preparing to unpack .../224-r-cran-commonmark_1.9.1-1_arm64.deb ... 322s Unpacking r-cran-commonmark (1.9.1-1) ... 322s Selecting previously unselected package r-cran-jquerylib. 322s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 322s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 322s Selecting previously unselected package r-cran-fs. 322s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 322s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 322s Selecting previously unselected package r-cran-sass. 322s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 322s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 322s Selecting previously unselected package r-cran-bslib. 323s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 323s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 323s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 323s Preparing to unpack .../229-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 323s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 323s Selecting previously unselected package r-cran-shiny. 323s Preparing to unpack .../230-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 323s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 324s Selecting previously unselected package r-cran-evaluate. 324s Preparing to unpack .../231-r-cran-evaluate_0.23-1_all.deb ... 324s Unpacking r-cran-evaluate (0.23-1) ... 324s Selecting previously unselected package r-cran-xfun. 324s Preparing to unpack .../232-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 324s Unpacking r-cran-xfun (0.41+dfsg-1) ... 324s Selecting previously unselected package r-cran-highr. 324s Preparing to unpack .../233-r-cran-highr_0.10+dfsg-1_all.deb ... 324s Unpacking r-cran-highr (0.10+dfsg-1) ... 324s Selecting previously unselected package libjs-mathjax. 324s Preparing to unpack .../234-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 324s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 328s Selecting previously unselected package r-cran-knitr. 328s Preparing to unpack .../235-r-cran-knitr_1.45+dfsg-1_all.deb ... 328s Unpacking r-cran-knitr (1.45+dfsg-1) ... 329s Selecting previously unselected package r-cran-tinytex. 329s Preparing to unpack .../236-r-cran-tinytex_0.49-1_all.deb ... 329s Unpacking r-cran-tinytex (0.49-1) ... 329s Selecting previously unselected package libjs-modernizr. 329s Preparing to unpack .../237-libjs-modernizr_2.6.2+ds1-5_all.deb ... 329s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 329s Selecting previously unselected package r-cran-rmarkdown. 329s Preparing to unpack .../238-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 329s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 329s Selecting previously unselected package r-cran-htmlwidgets. 329s Preparing to unpack .../239-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 329s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 329s Selecting previously unselected package r-cran-crosstalk. 329s Preparing to unpack .../240-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 329s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 330s Selecting previously unselected package r-cran-dt. 330s Preparing to unpack .../241-r-cran-dt_0.31+dfsg-1_all.deb ... 330s Unpacking r-cran-dt (0.31+dfsg-1) ... 330s Selecting previously unselected package r-bioc-interactivedisplaybase. 330s Preparing to unpack .../242-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 330s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 330s Selecting previously unselected package r-bioc-annotationhub. 330s Preparing to unpack .../243-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 330s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 330s Selecting previously unselected package r-bioc-biocio. 330s Preparing to unpack .../244-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 330s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 330s Selecting previously unselected package r-cran-formatr. 330s Preparing to unpack .../245-r-cran-formatr_1.14-1_all.deb ... 330s Unpacking r-cran-formatr (1.14-1) ... 331s Selecting previously unselected package r-cran-lambda.r. 331s Preparing to unpack .../246-r-cran-lambda.r_1.2.4-2build1_all.deb ... 331s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 331s Selecting previously unselected package r-cran-futile.options. 331s Preparing to unpack .../247-r-cran-futile.options_1.0.1-3build1_all.deb ... 331s Unpacking r-cran-futile.options (1.0.1-3build1) ... 331s Selecting previously unselected package r-cran-futile.logger. 331s Preparing to unpack .../248-r-cran-futile.logger_1.4.3-4build1_all.deb ... 331s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 331s Selecting previously unselected package r-cran-snow. 331s Preparing to unpack .../249-r-cran-snow_1%3a0.4.4-2_all.deb ... 331s Unpacking r-cran-snow (1:0.4.4-2) ... 331s Selecting previously unselected package r-cran-codetools. 331s Preparing to unpack .../250-r-cran-codetools_0.2-19-1_all.deb ... 331s Unpacking r-cran-codetools (0.2-19-1) ... 331s Selecting previously unselected package r-cran-bh. 331s Preparing to unpack .../251-r-cran-bh_1.84.0-1_all.deb ... 331s Unpacking r-cran-bh (1.84.0-1) ... 331s Selecting previously unselected package r-bioc-biocparallel. 331s Preparing to unpack .../252-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 331s Unpacking r-bioc-biocparallel (1.36.0-1) ... 332s Selecting previously unselected package r-cran-bookdown. 332s Preparing to unpack .../253-r-cran-bookdown_0.37+dfsg-1_all.deb ... 332s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 332s Selecting previously unselected package tex-common. 332s Preparing to unpack .../254-tex-common_6.18_all.deb ... 332s Unpacking tex-common (6.18) ... 333s Selecting previously unselected package t1utils. 333s Preparing to unpack .../255-t1utils_1.41-4build2_arm64.deb ... 333s Unpacking t1utils (1.41-4build2) ... 333s Selecting previously unselected package texlive-binaries. 333s Preparing to unpack .../256-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 333s Unpacking texlive-binaries (2023.20230311.66589-9) ... 334s Selecting previously unselected package texlive-base. 334s Preparing to unpack .../257-texlive-base_2023.20240207-1_all.deb ... 334s Unpacking texlive-base (2023.20240207-1) ... 339s Selecting previously unselected package texlive-latex-base. 339s Preparing to unpack .../258-texlive-latex-base_2023.20240207-1_all.deb ... 339s Unpacking texlive-latex-base (2023.20240207-1) ... 341s Selecting previously unselected package texlive-bibtex-extra. 341s Preparing to unpack .../259-texlive-bibtex-extra_2023.20240207-1_all.deb ... 341s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 354s Selecting previously unselected package r-bioc-biocstyle. 354s Preparing to unpack .../260-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 354s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 354s Selecting previously unselected package r-cran-xml. 354s Preparing to unpack .../261-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 354s Unpacking r-cran-xml (3.99-0.16.1-1) ... 354s Selecting previously unselected package r-cran-hms. 354s Preparing to unpack .../262-r-cran-hms_1.1.3-1_all.deb ... 354s Unpacking r-cran-hms (1.1.3-1) ... 354s Selecting previously unselected package r-cran-prettyunits. 354s Preparing to unpack .../263-r-cran-prettyunits_1.2.0-1_all.deb ... 354s Unpacking r-cran-prettyunits (1.2.0-1) ... 354s Selecting previously unselected package r-cran-progress. 354s Preparing to unpack .../264-r-cran-progress_1.2.3-1_all.deb ... 354s Unpacking r-cran-progress (1.2.3-1) ... 355s Selecting previously unselected package r-cran-xml2. 355s Preparing to unpack .../265-r-cran-xml2_1.3.6-1_arm64.deb ... 355s Unpacking r-cran-xml2 (1.3.6-1) ... 355s Selecting previously unselected package r-bioc-biomart. 355s Preparing to unpack .../266-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 355s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 355s Selecting previously unselected package r-cran-farver. 355s Preparing to unpack .../267-r-cran-farver_2.1.1-1_arm64.deb ... 355s Unpacking r-cran-farver (2.1.1-1) ... 355s Selecting previously unselected package r-cran-labeling. 355s Preparing to unpack .../268-r-cran-labeling_0.4.3-1_all.deb ... 355s Unpacking r-cran-labeling (0.4.3-1) ... 355s Selecting previously unselected package r-cran-colorspace. 355s Preparing to unpack .../269-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 355s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 355s Selecting previously unselected package r-cran-munsell. 356s Preparing to unpack .../270-r-cran-munsell_0.5.0-2build1_all.deb ... 356s Unpacking r-cran-munsell (0.5.0-2build1) ... 356s Selecting previously unselected package r-cran-rcolorbrewer. 356s Preparing to unpack .../271-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 356s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 356s Selecting previously unselected package r-cran-viridislite. 356s Preparing to unpack .../272-r-cran-viridislite_0.4.2-2_all.deb ... 356s Unpacking r-cran-viridislite (0.4.2-2) ... 356s Selecting previously unselected package r-cran-scales. 356s Preparing to unpack .../273-r-cran-scales_1.3.0-1_all.deb ... 356s Unpacking r-cran-scales (1.3.0-1) ... 356s Selecting previously unselected package r-cran-gtable. 356s Preparing to unpack .../274-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 356s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 356s Selecting previously unselected package r-cran-isoband. 356s Preparing to unpack .../275-r-cran-isoband_0.2.7-1_arm64.deb ... 356s Unpacking r-cran-isoband (0.2.7-1) ... 356s Selecting previously unselected package r-cran-mass. 357s Preparing to unpack .../276-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 357s Unpacking r-cran-mass (7.3-60.0.1-1) ... 357s Selecting previously unselected package r-cran-lattice. 357s Preparing to unpack .../277-r-cran-lattice_0.22-5-1_arm64.deb ... 357s Unpacking r-cran-lattice (0.22-5-1) ... 357s Selecting previously unselected package r-cran-nlme. 357s Preparing to unpack .../278-r-cran-nlme_3.1.164-1_arm64.deb ... 357s Unpacking r-cran-nlme (3.1.164-1) ... 357s Selecting previously unselected package r-cran-matrix. 357s Preparing to unpack .../279-r-cran-matrix_1.6-5-1_arm64.deb ... 357s Unpacking r-cran-matrix (1.6-5-1) ... 357s Selecting previously unselected package r-cran-mgcv. 358s Preparing to unpack .../280-r-cran-mgcv_1.9-1-1_arm64.deb ... 358s Unpacking r-cran-mgcv (1.9-1-1) ... 358s Selecting previously unselected package r-cran-ggplot2. 358s Preparing to unpack .../281-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 358s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 358s Selecting previously unselected package r-cran-cluster. 358s Preparing to unpack .../282-r-cran-cluster_2.1.6-1_arm64.deb ... 359s Unpacking r-cran-cluster (2.1.6-1) ... 359s Selecting previously unselected package r-cran-survival. 359s Preparing to unpack .../283-r-cran-survival_3.5-8-1_arm64.deb ... 359s Unpacking r-cran-survival (3.5-8-1) ... 359s Selecting previously unselected package r-cran-rpart. 359s Preparing to unpack .../284-r-cran-rpart_4.1.23-1_arm64.deb ... 359s Unpacking r-cran-rpart (4.1.23-1) ... 359s Selecting previously unselected package r-cran-nnet. 359s Preparing to unpack .../285-r-cran-nnet_7.3-19-2_arm64.deb ... 359s Unpacking r-cran-nnet (7.3-19-2) ... 359s Selecting previously unselected package r-cran-foreign. 359s Preparing to unpack .../286-r-cran-foreign_0.8.86-1_arm64.deb ... 359s Unpacking r-cran-foreign (0.8.86-1) ... 360s Selecting previously unselected package r-cran-gridextra. 360s Preparing to unpack .../287-r-cran-gridextra_2.3-3build1_all.deb ... 360s Unpacking r-cran-gridextra (2.3-3build1) ... 360s Selecting previously unselected package r-cran-data.table. 360s Preparing to unpack .../288-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 360s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 360s Selecting previously unselected package r-cran-backports. 360s Preparing to unpack .../289-r-cran-backports_1.4.1-1_arm64.deb ... 360s Unpacking r-cran-backports (1.4.1-1) ... 360s Selecting previously unselected package r-cran-checkmate. 360s Preparing to unpack .../290-r-cran-checkmate_2.3.1-1_arm64.deb ... 360s Unpacking r-cran-checkmate (2.3.1-1) ... 360s Selecting previously unselected package r-cran-rstudioapi. 361s Preparing to unpack .../291-r-cran-rstudioapi_0.15.0-1_all.deb ... 361s Unpacking r-cran-rstudioapi (0.15.0-1) ... 361s Selecting previously unselected package r-cran-htmltable. 361s Preparing to unpack .../292-r-cran-htmltable_2.4.2-1_all.deb ... 361s Unpacking r-cran-htmltable (2.4.2-1) ... 361s Selecting previously unselected package r-cran-viridis. 361s Preparing to unpack .../293-r-cran-viridis_0.6.5-1_all.deb ... 361s Unpacking r-cran-viridis (0.6.5-1) ... 361s Selecting previously unselected package r-cran-formula. 361s Preparing to unpack .../294-r-cran-formula_1.2-5-1_all.deb ... 361s Unpacking r-cran-formula (1.2-5-1) ... 361s Selecting previously unselected package r-cran-chron. 361s Preparing to unpack .../295-r-cran-chron_2.3-61-2_arm64.deb ... 361s Unpacking r-cran-chron (2.3-61-2) ... 361s Selecting previously unselected package r-cran-jpeg. 361s Preparing to unpack .../296-r-cran-jpeg_0.1-10-1_arm64.deb ... 361s Unpacking r-cran-jpeg (0.1-10-1) ... 361s Selecting previously unselected package r-cran-deldir. 361s Preparing to unpack .../297-r-cran-deldir_2.0-4-1_arm64.deb ... 361s Unpacking r-cran-deldir (2.0-4-1) ... 362s Selecting previously unselected package r-cran-rcppeigen. 362s Preparing to unpack .../298-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 362s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 363s Selecting previously unselected package r-cran-interp. 363s Preparing to unpack .../299-r-cran-interp_1.1-6-1_arm64.deb ... 363s Unpacking r-cran-interp (1.1-6-1) ... 363s Selecting previously unselected package r-cran-latticeextra. 363s Preparing to unpack .../300-r-cran-latticeextra_0.6-30-1_all.deb ... 363s Unpacking r-cran-latticeextra (0.6-30-1) ... 363s Selecting previously unselected package r-cran-acepack. 363s Preparing to unpack .../301-r-cran-acepack_1.4.2-1_arm64.deb ... 363s Unpacking r-cran-acepack (1.4.2-1) ... 363s Selecting previously unselected package r-cran-hmisc. 363s Preparing to unpack .../302-r-cran-hmisc_5.1-1-1_arm64.deb ... 363s Unpacking r-cran-hmisc (5.1-1-1) ... 363s Selecting previously unselected package r-cran-dichromat. 363s Preparing to unpack .../303-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 363s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 363s Selecting previously unselected package r-cran-matrixstats. 364s Preparing to unpack .../304-r-cran-matrixstats_1.2.0-1_arm64.deb ... 364s Unpacking r-cran-matrixstats (1.2.0-1) ... 364s Selecting previously unselected package r-bioc-matrixgenerics. 364s Preparing to unpack .../305-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 364s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 364s Selecting previously unselected package r-cran-abind. 364s Preparing to unpack .../306-r-cran-abind_1.4-5-2_all.deb ... 364s Unpacking r-cran-abind (1.4-5-2) ... 364s Selecting previously unselected package r-bioc-s4arrays. 364s Preparing to unpack .../307-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 364s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 364s Selecting previously unselected package r-bioc-sparsearray. 364s Preparing to unpack .../308-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 364s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 364s Selecting previously unselected package r-bioc-delayedarray. 364s Preparing to unpack .../309-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 364s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 365s Selecting previously unselected package r-bioc-summarizedexperiment. 365s Preparing to unpack .../310-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 365s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 365s Selecting previously unselected package r-bioc-rhtslib. 365s Preparing to unpack .../311-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 365s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 365s Selecting previously unselected package r-bioc-rsamtools. 365s Preparing to unpack .../312-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 365s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 366s Selecting previously unselected package r-bioc-genomicalignments. 366s Preparing to unpack .../313-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 366s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 366s Selecting previously unselected package r-cran-rjson. 366s Preparing to unpack .../314-r-cran-rjson_0.2.21-1_arm64.deb ... 366s Unpacking r-cran-rjson (0.2.21-1) ... 366s Selecting previously unselected package r-cran-restfulr. 366s Preparing to unpack .../315-r-cran-restfulr_0.0.15-1_arm64.deb ... 366s Unpacking r-cran-restfulr (0.0.15-1) ... 366s Selecting previously unselected package r-bioc-rtracklayer. 366s Preparing to unpack .../316-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 366s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 366s Selecting previously unselected package r-bioc-genomicfeatures. 366s Preparing to unpack .../317-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 366s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 367s Selecting previously unselected package r-bioc-bsgenome. 367s Preparing to unpack .../318-r-bioc-bsgenome_1.70.2-1_all.deb ... 367s Unpacking r-bioc-bsgenome (1.70.2-1) ... 367s Selecting previously unselected package r-bioc-variantannotation. 367s Preparing to unpack .../319-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 367s Unpacking r-bioc-variantannotation (1.48.1-1) ... 367s Selecting previously unselected package r-bioc-protgenerics. 367s Preparing to unpack .../320-r-bioc-protgenerics_1.34.0-1_all.deb ... 367s Unpacking r-bioc-protgenerics (1.34.0-1) ... 367s Selecting previously unselected package r-bioc-ensembldb. 367s Preparing to unpack .../321-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 367s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 368s Selecting previously unselected package r-bioc-biovizbase. 368s Preparing to unpack .../322-r-bioc-biovizbase_1.50.0-1_arm64.deb ... 368s Unpacking r-bioc-biovizbase (1.50.0-1) ... 368s Selecting previously unselected package r-cran-plyr. 368s Preparing to unpack .../323-r-cran-plyr_1.8.9-1_arm64.deb ... 368s Unpacking r-cran-plyr (1.8.9-1) ... 368s Selecting previously unselected package r-cran-reshape2. 368s Preparing to unpack .../324-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 368s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 368s Selecting previously unselected package r-bioc-graph. 368s Preparing to unpack .../325-r-bioc-graph_1.80.0-1_arm64.deb ... 368s Unpacking r-bioc-graph (1.80.0-1) ... 369s Selecting previously unselected package r-bioc-rbgl. 369s Preparing to unpack .../326-r-bioc-rbgl_1.78.0+dfsg-1_arm64.deb ... 369s Unpacking r-bioc-rbgl (1.78.0+dfsg-1) ... 369s Selecting previously unselected package r-bioc-organismdbi. 369s Preparing to unpack .../327-r-bioc-organismdbi_1.44.0+dfsg-1_all.deb ... 369s Unpacking r-bioc-organismdbi (1.44.0+dfsg-1) ... 369s Selecting previously unselected package r-cran-broom. 369s Preparing to unpack .../328-r-cran-broom_1.0.5+dfsg-1_all.deb ... 369s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 369s Selecting previously unselected package r-cran-forcats. 369s Preparing to unpack .../329-r-cran-forcats_1.0.0-1_all.deb ... 369s Unpacking r-cran-forcats (1.0.0-1) ... 369s Selecting previously unselected package r-cran-clipr. 369s Preparing to unpack .../330-r-cran-clipr_0.8.0-1_all.deb ... 369s Unpacking r-cran-clipr (0.8.0-1) ... 369s Selecting previously unselected package r-cran-tzdb. 370s Preparing to unpack .../331-r-cran-tzdb_0.4.0-2_arm64.deb ... 370s Unpacking r-cran-tzdb (0.4.0-2) ... 370s Selecting previously unselected package r-cran-vroom. 370s Preparing to unpack .../332-r-cran-vroom_1.6.5-1_arm64.deb ... 370s Unpacking r-cran-vroom (1.6.5-1) ... 370s Selecting previously unselected package r-cran-readr. 370s Preparing to unpack .../333-r-cran-readr_2.1.5-1_arm64.deb ... 370s Unpacking r-cran-readr (2.1.5-1) ... 370s Selecting previously unselected package r-cran-haven. 370s Preparing to unpack .../334-r-cran-haven_2.5.4-1_arm64.deb ... 370s Unpacking r-cran-haven (2.5.4-1) ... 370s Selecting previously unselected package r-cran-labelled. 370s Preparing to unpack .../335-r-cran-labelled_2.12.0-2_all.deb ... 370s Unpacking r-cran-labelled (2.12.0-2) ... 371s Selecting previously unselected package r-cran-broom.helpers. 371s Preparing to unpack .../336-r-cran-broom.helpers_1.14.0-2_all.deb ... 371s Unpacking r-cran-broom.helpers (1.14.0-2) ... 371s Selecting previously unselected package r-cran-patchwork. 371s Preparing to unpack .../337-r-cran-patchwork_1.2.0-1_all.deb ... 371s Unpacking r-cran-patchwork (1.2.0-1) ... 371s Selecting previously unselected package r-cran-ggstats. 371s Preparing to unpack .../338-r-cran-ggstats_0.5.1-2_all.deb ... 371s Unpacking r-cran-ggstats (0.5.1-2) ... 371s Selecting previously unselected package r-cran-ggally. 371s Preparing to unpack .../339-r-cran-ggally_2.2.1-1_all.deb ... 371s Unpacking r-cran-ggally (2.2.1-1) ... 372s Selecting previously unselected package r-bioc-ggbio. 372s Preparing to unpack .../340-r-bioc-ggbio_1.50.0-1_all.deb ... 372s Unpacking r-bioc-ggbio (1.50.0-1) ... 372s Selecting previously unselected package r-bioc-gviz. 372s Preparing to unpack .../341-r-bioc-gviz_1.46.1+dfsg-1_all.deb ... 372s 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Setting up r-cran-acepack (1.4.2-1) ... 390s Setting up r-cran-snow (1:0.4.4-2) ... 390s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 390s Setting up r-cran-glue (1.7.0-1) ... 390s Setting up r-cran-foreign (0.8.86-1) ... 390s Setting up r-cran-bit (4.0.5-1) ... 390s Setting up r-cran-xtable (1:1.8-4-2) ... 390s Setting up r-cran-cli (3.6.2-1) ... 390s Setting up gfortran (4:13.2.0-7ubuntu1) ... 390s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 390s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 390s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 390s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 390s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 391s Setting up r-cran-bitops (1.0-7-1) ... 391s Setting up r-bioc-biocversion (3.18.1-1) ... 391s Setting up r-cran-rprojroot (2.0.4-1) ... 391s Setting up r-cran-bit64 (4.0.5-1) ... 391s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 391s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 391s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 391s Setting up r-cran-deldir (2.0-4-1) ... 391s Setting up r-cran-askpass (1.2.0-1) ... 391s Setting up r-cran-fastmap (1.1.1-1) ... 391s Setting up r-cran-png (0.1-8-1) ... 391s Setting up r-bioc-biobase (2.62.0-1) ... 391s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 391s Setting up r-cran-rstudioapi (0.15.0-1) ... 391s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 391s Setting up r-cran-utf8 (1.2.4-1) ... 391s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 391s Setting up r-cran-stringi (1.8.3-1) ... 391s Setting up texlive-latex-base (2023.20240207-1) ... 391s Setting up r-cran-cpp11 (0.4.7-1) ... 391s Setting up r-cran-plyr (1.8.9-1) ... 391s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 391s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 391s Setting up r-cran-isoband (0.2.7-1) ... 391s Setting up r-cran-futile.logger (1.4.3-4build1) ... 391s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 391s Setting up r-cran-later (1.3.2+dfsg-1) ... 391s Setting up r-cran-matrix (1.6-5-1) ... 391s Setting up r-cran-tinytex (0.49-1) ... 391s Setting up r-cran-knitr (1.45+dfsg-1) ... 391s Setting up r-cran-mgcv (1.9-1-1) ... 391s Setting up g++ (4:13.2.0-7ubuntu1) ... 391s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 391s Setting up r-cran-cachem (1.0.8-1) ... 391s Setting up build-essential (12.10ubuntu1) ... 391s Setting up r-bioc-iranges (2.36.0-1) ... 391s Setting up r-cran-rjson (0.2.21-1) ... 391s Setting up r-cran-tzdb (0.4.0-2) ... 391s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 391s Setting up r-cran-restfulr (0.0.15-1) ... 391s Setting up r-cran-vctrs (0.6.5-1) ... 391s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 391s Setting up r-bioc-graph (1.80.0-1) ... 391s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 391s Setting up r-cran-ellipsis (0.3.2-2) ... 391s Setting up r-bioc-rbgl (1.78.0+dfsg-1) ... 391s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 391s Setting up r-base-dev (4.3.2-1build1) ... 391s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 391s Setting up r-cran-stringr (1.5.1-1) ... 391s Setting up r-bioc-biocparallel (1.36.0-1) ... 391s Setting up r-cran-callr (3.7.3-2) ... 391s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 391s Setting up r-cran-desc (1.4.3-1) ... 391s Setting up r-cran-xml2 (1.3.6-1) ... 391s Setting up r-cran-munsell (0.5.0-2build1) ... 391s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 391s Setting up r-cran-survival (3.5-8-1) ... 391s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 391s Setting up r-cran-forcats (1.0.0-1) ... 391s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 391s Setting up texlive-bibtex-extra (2023.20240207-1) ... 391s Setting up r-cran-reshape2 (1.4.4-2build1) ... 391s Setting up r-cran-interp (1.1-6-1) ... 391s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 391s Setting up r-cran-httr (1.4.7+dfsg-1) ... 391s Setting up r-cran-gridextra (2.3-3build1) ... 391s Setting up r-cran-hms (1.1.3-1) ... 391s Setting up r-cran-scales (1.3.0-1) ... 391s Setting up r-cran-memoise (2.0.1-1) ... 391s Setting up r-cran-promises (1.2.1+dfsg-1) ... 391s Setting up r-cran-purrr (1.0.2-1) ... 391s Setting up r-cran-blob (1.2.4-1) ... 391s Setting up r-cran-htmltools (0.5.7-1) ... 391s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 391s Setting up r-bioc-xvector (0.42.0-1) ... 391s Setting up r-cran-pkgbuild (1.4.3-1) ... 391s Setting up r-cran-sass (0.4.8+dfsg-1) ... 391s Setting up r-cran-dplyr (1.1.4-1) ... 391s Setting up r-cran-rsqlite (2.3.4-1) ... 391s Setting up r-cran-progress (1.2.3-1) ... 391s Setting up r-cran-pkgload (1.3.4-1) ... 391s Setting up r-cran-vroom (1.6.5-1) ... 391s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 391s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 391s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 391s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 391s Setting up r-cran-rematch2 (2.1.2-2build1) ... 391s Setting up r-cran-rpart (4.1.23-1) ... 391s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 391s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 391s Setting up r-cran-fontawesome (0.5.2-1) ... 391s Setting up r-cran-latticeextra (0.6-30-1) ... 391s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 391s Setting up r-cran-viridis (0.6.5-1) ... 391s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 391s Setting up r-cran-readr (2.1.5-1) ... 391s Setting up r-cran-waldo (0.5.2-1build1) ... 391s Setting up r-cran-tidyr (1.3.1-1) ... 391s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 391s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 391s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 391s Setting up r-cran-patchwork (1.2.0-1) ... 391s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 391s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 391s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 391s Setting up r-cran-haven (2.5.4-1) ... 391s Setting up r-bioc-annotationdbi (1.64.1-1) ... 391s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 391s Setting up r-cran-testthat (3.2.1-1) ... 391s Setting up r-cran-broom (1.0.5+dfsg-1) ... 391s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 391s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 391s Setting up r-cran-labelled (2.12.0-2) ... 391s Setting up r-bioc-genomicalignments (1.38.2-1) ... 391s Setting up r-cran-bookdown (0.37+dfsg-1) ... 391s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 391s Setting up r-bioc-rtracklayer (1.62.0-1) ... 391s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 391s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 391s Setting up r-cran-broom.helpers (1.14.0-2) ... 391s Setting up r-bioc-bsgenome (1.70.2-1) ... 391s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 391s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 391s Setting up r-cran-dt (0.31+dfsg-1) ... 391s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 391s Setting up r-cran-ggstats (0.5.1-2) ... 391s Setting up r-bioc-variantannotation (1.48.1-1) ... 391s Setting up r-cran-ggally (2.2.1-1) ... 391s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 391s Setting up r-cran-htmltable (2.4.2-1) ... 391s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 391s Setting up r-cran-hmisc (5.1-1-1) ... 391s Setting up r-bioc-biovizbase (1.50.0-1) ... 391s Setting up r-bioc-ggbio (1.50.0-1) ... 391s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 391s Setting up autopkgtest-satdep (0) ... 391s Processing triggers for man-db (2.12.0-3) ... 394s Processing triggers for install-info (7.1-3) ... 394s Processing triggers for libc-bin (2.39-0ubuntu2) ... 395s Processing triggers for tex-common (6.18) ... 396s Running updmap-sys. This may take some time... done. 396s Running mktexlsr /var/lib/texmf ... done. 397s Building format(s) --all. 516s This may take some time... done. 565s (Reading database ... 132465 files and directories currently installed.) 565s Removing autopkgtest-satdep (0) ... 566s autopkgtest [22:05:28]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 566s autopkgtest [22:05:28]: test pkg-r-autopkgtest: [----------------------- 566s Test: Try to load the R library ensembldb 567s 567s R version 4.3.2 (2023-10-31) -- "Eye Holes" 567s Copyright (C) 2023 The R Foundation for Statistical Computing 567s Platform: aarch64-unknown-linux-gnu (64-bit) 567s 567s R is free software and comes with ABSOLUTELY NO WARRANTY. 567s You are welcome to redistribute it under certain conditions. 567s Type 'license()' or 'licence()' for distribution details. 567s 567s R is a collaborative project with many contributors. 567s Type 'contributors()' for more information and 567s 'citation()' on how to cite R or R packages in publications. 567s 567s Type 'demo()' for some demos, 'help()' for on-line help, or 567s 'help.start()' for an HTML browser interface to help. 567s Type 'q()' to quit R. 567s 567s > library('ensembldb') 567s Loading required package: BiocGenerics 568s 568s Attaching package: ‘BiocGenerics’ 568s 568s The following objects are masked from ‘package:stats’: 568s 568s IQR, mad, sd, var, xtabs 568s 568s The following objects are masked from ‘package:base’: 568s 568s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 568s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 568s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 568s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 568s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 568s table, tapply, union, unique, unsplit, which.max, which.min 568s 568s Loading required package: GenomicRanges 568s Loading required package: stats4 568s Loading required package: S4Vectors 571s 571s Attaching package: ‘S4Vectors’ 571s 571s The following object is masked from ‘package:utils’: 571s 571s findMatches 571s 571s The following objects are masked from ‘package:base’: 571s 571s expand.grid, I, unname 571s 571s Loading required package: IRanges 575s Loading required package: GenomeInfoDb 578s Loading required package: GenomicFeatures 578s Loading required package: AnnotationDbi 578s Loading required package: Biobase 579s Welcome to Bioconductor 579s 579s Vignettes contain introductory material; view with 579s 'browseVignettes()'. To cite Bioconductor, see 579s 'citation("Biobase")', and for packages 'citation("pkgname")'. 579s 611s Loading required package: AnnotationFilter 613s 613s Attaching package: 'ensembldb' 613s 613s > 613s > 613s The following object is masked from 'package:stats': 613s 613s filter 613s 613s Other tests are currently unsupported! 613s They will be progressively added. 614s autopkgtest [22:06:16]: test pkg-r-autopkgtest: -----------------------] 614s autopkgtest [22:06:16]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 614s pkg-r-autopkgtest PASS (superficial) 615s autopkgtest [22:06:17]: @@@@@@@@@@@@@@@@@@@@ summary 615s pkg-r-autopkgtest PASS (superficial) 632s Creating nova instance adt-noble-arm64-r-bioc-ensembldb-20240316-215602-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...