0s autopkgtest [13:41:20]: starting date and time: 2024-03-16 13:41:20+0000 0s autopkgtest [13:41:20]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:41:20]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.evo8m_a6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-ensembldb --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-13.secgroup --name adt-noble-arm64-r-bioc-ensembldb-20240316-134120-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 81s autopkgtest [13:42:41]: testbed dpkg architecture: arm64 81s autopkgtest [13:42:41]: testbed apt version: 2.7.12 81s autopkgtest [13:42:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 82s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 83s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 84s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 84s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 84s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 84s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 84s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 84s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 84s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 84s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 84s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 84s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 84s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 86s Fetched 9092 kB in 3s (3308 kB/s) 86s Reading package lists... 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 91s Calculating upgrade... 91s The following packages will be REMOVED: 91s libssl3 91s The following NEW packages will be installed: 91s libssl3t64 91s The following packages have been kept back: 91s curl 91s The following packages will be upgraded: 91s openssl ubuntu-minimal ubuntu-standard 91s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 91s Need to get 2775 kB of archives. 91s After this operation, 72.7 kB of additional disk space will be used. 91s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 92s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 92s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 92s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 93s Fetched 2775 kB in 1s (3737 kB/s) 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 93s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 93s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 93s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 93s wget depends on libssl3 (>= 3.0.0). 93s u-boot-tools depends on libssl3 (>= 3.0.0). 93s tnftp depends on libssl3 (>= 3.0.0). 93s tcpdump depends on libssl3 (>= 3.0.0). 93s systemd-resolved depends on libssl3 (>= 3.0.0). 93s systemd depends on libssl3 (>= 3.0.0). 93s sudo depends on libssl3 (>= 3.0.0). 93s sbsigntool depends on libssl3 (>= 3.0.0). 93s rsync depends on libssl3 (>= 3.0.0). 93s python3-cryptography depends on libssl3 (>= 3.0.0). 93s openssh-server depends on libssl3 (>= 3.0.10). 93s openssh-client depends on libssl3 (>= 3.0.10). 93s mtd-utils depends on libssl3 (>= 3.0.0). 93s mokutil depends on libssl3 (>= 3.0.0). 93s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 93s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 93s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 93s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 93s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 93s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 93s libnvme1 depends on libssl3 (>= 3.0.0). 93s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 93s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 93s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 93s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 93s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 93s kmod depends on libssl3 (>= 3.0.0). 93s dhcpcd-base depends on libssl3 (>= 3.0.0). 93s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 93s 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 93s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 93s Selecting previously unselected package libssl3t64:arm64. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 93s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 93s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 94s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 94s Unpacking ubuntu-minimal (1.536) over (1.535) ... 94s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 94s Unpacking ubuntu-standard (1.536) over (1.535) ... 94s Setting up ubuntu-minimal (1.536) ... 94s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 94s Setting up ubuntu-standard (1.536) ... 94s Setting up openssl (3.0.13-0ubuntu1) ... 94s Processing triggers for man-db (2.12.0-3) ... 95s Processing triggers for libc-bin (2.39-0ubuntu2) ... 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 96s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 96s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 97s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 97s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 98s Reading package lists... 98s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Calculating upgrade... 100s The following packages have been kept back: 100s curl 100s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 100s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 104s autopkgtest [13:43:04]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 104s autopkgtest [13:43:04]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ensembldb 106s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ensembldb 2.26.0+dfsg-1 (dsc) [2438 B] 106s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ensembldb 2.26.0+dfsg-1 (tar) [1110 kB] 106s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ensembldb 2.26.0+dfsg-1 (diff) [6200 B] 107s gpgv: Signature made Fri Dec 1 04:54:01 2023 UTC 107s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 107s gpgv: issuer "plessy@debian.org" 107s gpgv: Can't check signature: No public key 107s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ensembldb_2.26.0+dfsg-1.dsc: no acceptable signature found 107s autopkgtest [13:43:07]: testing package r-bioc-ensembldb version 2.26.0+dfsg-1 107s autopkgtest [13:43:07]: build not needed 109s autopkgtest [13:43:09]: test pkg-r-autopkgtest: preparing testbed 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s Starting pkgProblemResolver with broken count: 0 112s Starting 2 pkgProblemResolver with broken count: 0 112s Done 112s The following additional packages will be installed: 112s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 112s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 112s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 112s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 112s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 112s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 112s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 112s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 112s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 112s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 112s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 112s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 112s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 112s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 112s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 112s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 112s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 112s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 112s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 112s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 112s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 112s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 112s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 libptexenc1 112s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 112s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 112s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 112s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 112s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 112s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 112s r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 112s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 112s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 112s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 112s r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 112s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 112s r-bioc-ggbio r-bioc-graph r-bioc-gviz r-bioc-interactivedisplaybase 112s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi 112s r-bioc-protgenerics r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools 112s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 112s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 112s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 112s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 112s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom 112s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 112s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 112s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 112s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi 112s r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj 112s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 112s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 112s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 112s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggally 112s r-cran-ggplot2 r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable 112s r-cran-haven r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable 112s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp 112s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 112s r-cran-labeling r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 112s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 112s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 112s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 112s r-cran-openssl r-cran-patchwork r-cran-pillar r-cran-pkgbuild 112s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 112s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 112s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 112s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 112s r-cran-rematch2 r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 112s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 112s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 112s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 112s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 112s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 112s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 112s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 112s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 112s xdg-utils zip zlib1g-dev 112s Suggested packages: 112s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 112s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 112s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 112s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 112s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 112s libboost-context1.83-dev libboost-contract1.83-dev 112s libboost-coroutine1.83-dev libboost-date-time1.83-dev 112s libboost-exception1.83-dev libboost-fiber1.83-dev 112s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 112s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 112s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 112s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 112s libboost-numpy1.83-dev libboost-program-options1.83-dev 112s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 112s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 112s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 112s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 112s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 112s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 112s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 112s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 112s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 112s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 112s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 112s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 112s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-experimenthub 112s r-bioc-all r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach 112s r-cran-bbmisc r-cran-doparallel r-bioc-shortread r-cran-batchtools 112s r-cran-mockery r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter 112s r-cran-lobstr r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 112s r-cran-markdown r-bioc-dexseq r-cran-sparsem r-bioc-sparsematrixstats 112s r-bioc-limma r-bioc-rhdf5 r-bioc-snpstats r-cran-roxygen2 r-cran-ff 112s r-cran-covr r-cran-aer r-cran-bbmle r-cran-boot r-cran-car r-cran-cardata 112s r-cran-caret r-cran-cmprsk r-cran-coda r-cran-e1071 r-cran-emmeans 112s r-cran-epir r-cran-gam r-cran-gee r-cran-geepack r-cran-glmnet r-cran-gmm 112s r-cran-irlba r-cran-ks r-cran-lavaan r-cran-leaps r-cran-lme4 r-cran-lmtest 112s r-cran-lsmeans r-cran-maps r-cran-mclust r-cran-metafor r-cran-modeldata 112s r-cran-multcomp r-cran-network r-cran-ordinal r-cran-plm r-cran-psych 112s r-cran-quantreg r-cran-robust r-cran-robustbase r-cran-rsample 112s r-cran-sandwich r-cran-sp r-cran-spdep r-cran-spatialreg r-cran-spelling 112s r-cran-survey r-cran-systemfit r-cran-tseries r-cran-zoo r-cran-kernsmooth 112s r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-rmysql 112s r-cran-polyclip r-cran-lubridate r-cran-scatterplot3d r-cran-magick 112s r-cran-sf r-cran-getopt r-cran-formattable r-cran-nanotime 112s r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 112s r-cran-rlecuyer r-cran-bench r-cran-here debhelper ghostscript gv 112s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 112s hintview texlive-latex-base-doc wp2latex 112s Recommended packages: 112s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 112s r-recommended r-doc-html r-cran-remotes r-cran-downlit r-cran-miniui 112s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-covr 112s r-cran-brms r-cran-broom.mixed r-cran-cmprsk r-cran-effects r-cran-emmeans 112s r-cran-gam r-cran-gee r-cran-geepack r-cran-ggeffects r-cran-glmmtmb 112s r-cran-lavaan r-cran-lme4 r-cran-mice r-cran-ordinal r-cran-parameters 112s r-cran-plm r-cran-pscl r-cran-rstanarm r-cran-spelling r-cran-survey 112s r-cran-vgam r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-fastmatch 112s r-cran-devtools r-cran-tinytest r-cran-whoami r-cran-bench r-cran-decor 112s r-cran-lobstr r-cran-webutils r-cran-r.utils r-cran-xts r-cran-nanotime 112s r-cran-zoo r-cran-rpostgresql r-cran-gh r-cran-rmysql r-cran-future w3m 112s | www-browser r-cran-unitizer r-cran-rsvg r-cran-geosphere r-cran-ggforce 112s r-cran-igraph r-cran-intergraph r-cran-maps r-cran-mapproj r-cran-network 112s r-cran-sna r-cran-roxygen2 r-cran-vdiffr r-cran-hexbin r-cran-multcomp 112s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-sf r-cran-svglite 112s r-cran-reshape r-cran-cairo r-cran-markdown r-cran-r.rsp r-cran-gridsvg 112s r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 112s node-highlight.js r-cran-snakecase r-cran-lintr r-cran-tidyverse 112s r-cran-r.devices r-cran-sodium r-cran-gridgraphics r-cran-lubridate 112s r-cran-mathjaxr r-cran-mockr r-cran-doparallel r-cran-foreach 112s r-cran-iterators r-cran-itertools r-cran-webfakes r-cran-pingr r-cran-runit 112s r-cran-usethis r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-rvest 112s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 112s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 112s x11-xserver-utils 112s The following packages will be REMOVED: 112s libcurl4 libpsl5 112s The following NEW packages will be installed: 112s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 112s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 112s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 112s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 112s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 112s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 112s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 112s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 112s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 112s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 112s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 112s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 112s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 112s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 112s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 112s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 112s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 112s libjs-popper.js libjs-prettify libjs-sifter.js 112s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 112s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 112s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 112s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 112s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 112s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 112s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 112s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 112s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 112s libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 112s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 112s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 112s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 112s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 112s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 112s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 112s r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 112s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 112s r-bioc-ggbio r-bioc-graph r-bioc-gviz r-bioc-interactivedisplaybase 112s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi 112s r-bioc-protgenerics r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools 112s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 112s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 112s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 112s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 112s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom 112s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 112s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 112s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 112s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi 112s r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj 112s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 112s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 112s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 112s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggally 112s r-cran-ggplot2 r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable 112s r-cran-haven r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable 112s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp 112s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 112s r-cran-labeling r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 112s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 112s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 112s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 112s r-cran-openssl r-cran-patchwork r-cran-pillar r-cran-pkgbuild 112s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 112s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 112s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 112s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 112s r-cran-rematch2 r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 112s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 112s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 112s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 112s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 112s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 112s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 112s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 112s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 112s xdg-utils zip zlib1g-dev 112s The following packages will be upgraded: 112s curl 112s 1 upgraded, 357 newly installed, 2 to remove and 0 not upgraded. 112s Need to get 500 MB/500 MB of archives. 112s After this operation, 1472 MB of additional disk space will be used. 112s Get:1 /tmp/autopkgtest.2r8CGc/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [796 B] 113s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 113s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 113s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 113s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 113s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 113s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 113s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 113s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 113s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 113s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 113s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 113s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 113s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 113s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 113s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 113s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 113s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 113s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 113s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 113s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 113s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 114s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 114s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 114s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 114s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 114s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 114s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 114s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 114s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 114s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 114s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 114s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 115s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 115s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 115s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 115s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 115s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 115s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 115s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 115s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 115s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 115s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 115s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 115s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 115s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 115s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 115s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 115s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 115s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 115s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 115s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 115s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 115s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 115s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 115s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 115s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 115s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 115s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 115s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 115s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 116s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 116s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 116s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 116s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 116s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 116s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 116s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 116s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 116s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 116s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 116s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 116s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 116s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 116s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 116s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 116s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 116s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 116s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 116s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 116s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 116s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 116s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 116s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 116s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 116s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 116s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 116s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 116s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 116s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 116s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 116s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 116s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 116s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 116s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 116s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 116s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 116s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 116s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 116s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 116s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 116s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 117s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 117s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 117s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 117s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 117s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 117s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 117s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 117s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 117s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 117s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 117s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 117s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 117s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 117s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 117s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 117s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 117s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 117s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 117s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 117s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 117s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 117s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 117s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 117s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 117s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 117s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 117s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 117s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 117s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 117s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 117s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 117s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 117s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 117s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 117s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 117s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 117s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 117s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 117s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 117s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 118s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 118s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 118s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 118s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 118s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 118s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 118s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 119s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 119s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 119s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 119s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 119s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 119s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 120s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 120s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 120s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 120s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 120s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 120s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 120s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 120s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 120s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 120s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 120s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 120s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 120s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 120s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 120s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 120s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 120s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 120s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 120s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 120s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 120s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 120s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 120s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 120s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 120s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 120s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 120s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 120s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 120s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 120s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 120s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 121s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 121s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 121s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 121s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 121s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 122s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 122s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 122s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 122s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 122s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 122s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 122s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 122s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 122s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 122s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 122s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 122s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 122s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 122s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 122s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 122s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 122s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 122s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 122s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 122s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 122s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 122s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 122s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 122s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 122s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 122s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 123s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 123s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 123s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 123s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 123s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 123s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 123s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 123s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 123s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 123s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 123s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 123s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 123s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 123s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 123s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 123s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 123s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 123s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 123s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 123s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 123s Get:238 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 123s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 123s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 123s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 123s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 123s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 123s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 123s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 123s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 123s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 123s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 123s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 123s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 123s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 123s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 123s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 123s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 123s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 123s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 123s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 123s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 123s Get:259 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 123s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 124s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 125s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 125s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 127s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 127s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 127s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 127s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 127s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 127s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 127s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 127s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 127s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 127s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 128s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 128s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 128s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 128s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 128s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 128s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 128s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 128s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 128s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 128s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 128s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 128s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 128s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 128s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 128s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 128s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nnet arm64 7.3-19-2 [111 kB] 128s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreign arm64 0.8.86-1 [240 kB] 128s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 128s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 129s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 129s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 129s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 129s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltable all 2.4.2-1 [381 kB] 129s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 129s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 129s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-chron arm64 2.3-61-2 [186 kB] 129s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 129s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 129s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 129s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 129s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 129s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-acepack arm64 1.4.2-1 [60.5 kB] 129s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hmisc arm64 5.1-1-1 [3486 kB] 130s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 130s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 130s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 130s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 130s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 130s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 130s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 130s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 130s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 130s Get:316 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1build1 [3636 kB] 130s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 130s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 130s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 130s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 130s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 130s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 130s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 130s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 130s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 131s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biovizbase arm64 1.50.0-1 [2665 kB] 131s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 131s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 131s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 131s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rbgl arm64 1.78.0+dfsg-1 [541 kB] 131s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 131s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 131s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-forcats all 1.0.0-1 [369 kB] 131s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 131s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 131s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 131s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 131s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-haven arm64 2.5.4-1 [338 kB] 131s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labelled all 2.12.0-2 [312 kB] 131s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom.helpers all 1.14.0-2 [557 kB] 131s Get:341 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-patchwork all 1.2.0-1 [3161 kB] 131s Get:342 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggstats all 0.5.1-2 [839 kB] 131s Get:343 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggally all 2.2.1-1 [2022 kB] 131s Get:344 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ggbio all 1.50.0-1 [2939 kB] 131s Get:345 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 131s Get:346 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 131s Get:347 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 131s Get:348 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 131s Get:349 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 131s Get:350 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 131s Get:351 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 131s Get:352 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 131s Get:353 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 131s Get:354 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 132s Get:355 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 132s Get:356 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 132s Get:357 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 132s Get:358 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 133s Preconfiguring packages ... 133s Fetched 500 MB in 19s (26.0 MB/s) 133s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 133s wget depends on libpsl5 (>= 0.16.0). 133s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 133s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 133s 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 133s Removing libpsl5:arm64 (0.21.2-1build1) ... 133s Selecting previously unselected package libpsl5t64:arm64. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 133s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 133s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 134s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 134s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 134s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 134s Selecting previously unselected package libcurl4t64:arm64. 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 134s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 134s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 134s Selecting previously unselected package libc-dev-bin. 134s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 134s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 134s Selecting previously unselected package linux-libc-dev:arm64. 134s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 134s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 134s Selecting previously unselected package libcrypt-dev:arm64. 134s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 134s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 134s Selecting previously unselected package libtirpc-dev:arm64. 134s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 134s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 134s Selecting previously unselected package libnsl-dev:arm64. 134s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 134s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 134s Selecting previously unselected package rpcsvc-proto. 134s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 134s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 134s Selecting previously unselected package libc6-dev:arm64. 134s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 134s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 134s Selecting previously unselected package libisl23:arm64. 134s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 134s Unpacking libisl23:arm64 (0.26-3) ... 134s Selecting previously unselected package libmpc3:arm64. 134s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 134s Unpacking libmpc3:arm64 (1.3.1-1) ... 134s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 134s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 134s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 134s Selecting previously unselected package cpp-13. 134s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 134s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 134s Selecting previously unselected package cpp-aarch64-linux-gnu. 134s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 134s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 134s Selecting previously unselected package cpp. 134s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 134s Unpacking cpp (4:13.2.0-7ubuntu1) ... 134s Selecting previously unselected package libcc1-0:arm64. 134s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 134s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 134s Selecting previously unselected package libgomp1:arm64. 134s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 134s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 135s Selecting previously unselected package libitm1:arm64. 135s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 135s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 135s Selecting previously unselected package libatomic1:arm64. 135s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 135s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 135s Selecting previously unselected package libasan8:arm64. 135s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 135s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 135s Selecting previously unselected package liblsan0:arm64. 135s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 135s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 135s Selecting previously unselected package libtsan2:arm64. 135s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 135s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 135s Selecting previously unselected package libubsan1:arm64. 135s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 135s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 135s Selecting previously unselected package libhwasan0:arm64. 135s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 135s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 135s Selecting previously unselected package libgcc-13-dev:arm64. 135s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 135s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 135s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 135s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 135s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 135s Selecting previously unselected package gcc-13. 135s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 135s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 135s Selecting previously unselected package gcc-aarch64-linux-gnu. 135s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 135s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 135s Selecting previously unselected package gcc. 135s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 135s Unpacking gcc (4:13.2.0-7ubuntu1) ... 135s Selecting previously unselected package libstdc++-13-dev:arm64. 135s Preparing to unpack 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.../033-build-essential_12.10ubuntu1_arm64.deb ... 136s Unpacking build-essential (12.10ubuntu1) ... 136s Selecting previously unselected package dctrl-tools. 136s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 136s Unpacking dctrl-tools (2.24-3build2) ... 136s Selecting previously unselected package fonts-dejavu-mono. 136s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 136s Unpacking fonts-dejavu-mono (2.37-8) ... 136s Selecting previously unselected package fonts-dejavu-core. 136s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 136s Unpacking fonts-dejavu-core (2.37-8) ... 136s Selecting previously unselected package fontconfig-config. 136s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 136s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 136s Selecting previously unselected package libfontconfig1:arm64. 136s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 136s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 136s Selecting previously unselected package fontconfig. 136s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 136s Unpacking fontconfig (2.15.0-1ubuntu1) ... 136s Selecting previously unselected package fonts-font-awesome. 136s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 136s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 136s Selecting previously unselected package fonts-glyphicons-halflings. 136s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 136s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 136s Selecting previously unselected package fonts-lmodern. 136s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 136s Unpacking fonts-lmodern (2.005-1) ... 137s Selecting previously unselected package fonts-mathjax. 137s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 137s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 137s Selecting previously unselected package libgfortran5:arm64. 137s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 137s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 137s Selecting previously unselected package libgfortran-13-dev:arm64. 137s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 137s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 137s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 137s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 137s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 137s Selecting previously unselected package gfortran-13. 137s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 137s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 137s Selecting previously unselected package gfortran-aarch64-linux-gnu. 137s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 137s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 137s Selecting previously unselected package gfortran. 137s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 137s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 137s Selecting previously unselected package icu-devtools. 137s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 137s Unpacking icu-devtools (74.2-1ubuntu1) ... 137s Selecting previously unselected package javascript-common. 137s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 137s Unpacking javascript-common (11+nmu1) ... 137s Selecting previously unselected package libio-string-perl. 137s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 137s Unpacking libio-string-perl (1.08-4) ... 137s Selecting previously unselected package liblatex-tounicode-perl. 137s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 137s Unpacking liblatex-tounicode-perl (0.54-2) ... 137s Selecting previously unselected package libbibtex-parser-perl. 137s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 137s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 137s Selecting previously unselected package libblas3:arm64. 137s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 137s Unpacking libblas3:arm64 (3.12.0-3) ... 137s Selecting previously unselected package libblas-dev:arm64. 137s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 137s Unpacking libblas-dev:arm64 (3.12.0-3) ... 137s Selecting previously unselected package libboost1.83-dev:arm64. 137s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 137s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 139s Selecting previously unselected package libboost-dev:arm64. 139s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 139s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 139s Selecting previously unselected package libbz2-dev:arm64. 139s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 139s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 139s Selecting previously unselected package libpixman-1-0:arm64. 139s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 139s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 139s Selecting previously unselected package libxcb-render0:arm64. 139s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 139s Unpacking libxcb-render0:arm64 (1.15-1) ... 139s Selecting previously unselected package libxcb-shm0:arm64. 139s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 139s Unpacking libxcb-shm0:arm64 (1.15-1) ... 139s Selecting previously unselected package libxrender1:arm64. 139s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 139s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 139s Selecting previously unselected package libcairo2:arm64. 139s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 139s Unpacking libcairo2:arm64 (1.18.0-1) ... 139s Selecting previously unselected package libdatrie1:arm64. 139s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 139s Unpacking libdatrie1:arm64 (0.2.13-3) ... 139s Selecting previously unselected package libdeflate0:arm64. 139s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 139s Unpacking libdeflate0:arm64 (1.19-1) ... 139s Selecting previously unselected package libgraphite2-3:arm64. 139s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 139s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 139s Selecting previously unselected package libharfbuzz0b:arm64. 139s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 139s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 139s Selecting previously unselected package x11-common. 139s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 139s Unpacking x11-common (1:7.7+23ubuntu2) ... 139s Selecting previously unselected package libice6:arm64. 139s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 139s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 139s Selecting previously unselected package libicu-dev:arm64. 139s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 139s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 140s Selecting previously unselected package libjpeg-turbo8:arm64. 140s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 140s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 140s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 140s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 140s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 140s Selecting previously unselected package libjpeg8:arm64. 140s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 140s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 140s Selecting previously unselected package libjpeg8-dev:arm64. 140s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 140s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 140s Selecting previously unselected package libjpeg-dev:arm64. 140s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 140s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 140s Selecting previously unselected package libjs-bootstrap. 140s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 140s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 140s Selecting previously unselected package libjs-popper.js. 140s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 140s Unpacking libjs-popper.js (1.16.1+ds-6) ... 140s Selecting previously unselected package libjs-bootstrap4. 140s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 140s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 140s Selecting previously unselected package libjs-d3. 140s 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unselected package libjs-json. 140s Preparing to unpack .../090-libjs-json_0~20221030+~1.0.8-1_all.deb ... 140s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 140s Selecting previously unselected package libjs-lunr. 140s Preparing to unpack .../091-libjs-lunr_2.3.9~dfsg-2_all.deb ... 140s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 140s Selecting previously unselected package libjs-prettify. 141s Preparing to unpack .../092-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 141s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 141s Selecting previously unselected package libkpathsea6:arm64. 141s Preparing to unpack .../093-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 141s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 141s Selecting previously unselected package liblapack3:arm64. 141s Preparing to unpack .../094-liblapack3_3.12.0-3_arm64.deb ... 141s Unpacking liblapack3:arm64 (3.12.0-3) ... 141s Selecting previously unselected package liblapack-dev:arm64. 141s Preparing to unpack .../095-liblapack-dev_3.12.0-3_arm64.deb ... 141s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 141s Selecting previously unselected package liblerc4:arm64. 141s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 141s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 141s Selecting previously unselected package liblua5.4-0:arm64. 141s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_arm64.deb ... 141s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 141s Selecting previously unselected package libncurses-dev:arm64. 141s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 141s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 141s Selecting previously unselected package libthai-data. 141s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 141s Unpacking libthai-data (0.1.29-2) ... 141s Selecting previously unselected package libthai0:arm64. 141s Preparing to unpack .../100-libthai0_0.1.29-2_arm64.deb ... 141s Unpacking libthai0:arm64 (0.1.29-2) ... 141s Selecting previously unselected package libpango-1.0-0:arm64. 141s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 141s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 141s Selecting previously unselected package libpangoft2-1.0-0:arm64. 141s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 141s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 141s Selecting previously unselected package libpangocairo-1.0-0:arm64. 141s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 141s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 141s Selecting previously unselected package libpaper1:arm64. 141s Preparing to unpack .../104-libpaper1_1.1.29_arm64.deb ... 141s Unpacking libpaper1:arm64 (1.1.29) ... 141s Selecting previously unselected package libpaper-utils. 141s Preparing to unpack .../105-libpaper-utils_1.1.29_arm64.deb ... 141s Unpacking libpaper-utils (1.1.29) ... 141s Selecting previously unselected package libpcre2-16-0:arm64. 141s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 141s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 141s Selecting previously unselected package libpcre2-32-0:arm64. 141s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 141s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 141s Selecting previously unselected package libpcre2-posix3:arm64. 141s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 141s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 142s Selecting previously unselected package libpcre2-dev:arm64. 142s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 142s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 142s Selecting previously unselected package libpkgconf3:arm64. 142s Preparing to unpack .../110-libpkgconf3_1.8.1-2_arm64.deb ... 142s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 142s Selecting previously unselected package zlib1g-dev:arm64. 142s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 142s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 142s Selecting previously unselected package libpng-dev:arm64. 142s Preparing to unpack .../112-libpng-dev_1.6.43-1_arm64.deb ... 142s Unpacking libpng-dev:arm64 (1.6.43-1) ... 142s Selecting previously unselected package libpotrace0:arm64. 142s Preparing to unpack .../113-libpotrace0_1.16-2_arm64.deb ... 142s Unpacking libpotrace0:arm64 (1.16-2) ... 142s Selecting previously unselected package libptexenc1:arm64. 142s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_arm64.deb ... 142s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 142s Selecting previously unselected package libreadline-dev:arm64. 142s Preparing to unpack .../115-libreadline-dev_8.2-3_arm64.deb ... 142s Unpacking libreadline-dev:arm64 (8.2-3) ... 142s Selecting previously unselected package libsharpyuv0:arm64. 142s Preparing to unpack .../116-libsharpyuv0_1.3.2-0.4_arm64.deb ... 142s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 142s Selecting previously unselected package libsm6:arm64. 142s Preparing to unpack .../117-libsm6_2%3a1.2.3-1build2_arm64.deb ... 142s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 142s Selecting previously unselected package libsynctex2:arm64. 142s Preparing to unpack .../118-libsynctex2_2023.20230311.66589-9_arm64.deb ... 142s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 142s Selecting previously unselected package libtcl8.6:arm64. 142s Preparing to unpack .../119-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 142s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 142s Selecting previously unselected package libteckit0:arm64. 142s Preparing to unpack .../120-libteckit0_2.5.12+ds1-1_arm64.deb ... 142s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 142s Selecting previously unselected package libtexlua53-5:arm64. 142s Preparing to unpack .../121-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 142s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 142s Selecting previously unselected package libjbig0:arm64. 142s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 142s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 142s Selecting previously unselected package libwebp7:arm64. 142s Preparing to unpack .../123-libwebp7_1.3.2-0.4_arm64.deb ... 142s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 142s Selecting previously unselected package libtiff6:arm64. 142s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 142s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 142s Selecting previously unselected package libxft2:arm64. 142s Preparing to unpack .../125-libxft2_2.3.6-1_arm64.deb ... 142s Unpacking libxft2:arm64 (2.3.6-1) ... 142s Selecting previously unselected package libxss1:arm64. 142s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_arm64.deb ... 142s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 142s Selecting previously unselected package libtk8.6:arm64. 142s Preparing to unpack .../127-libtk8.6_8.6.13-2_arm64.deb ... 142s Unpacking libtk8.6:arm64 (8.6.13-2) ... 142s Selecting previously unselected package libxt6:arm64. 142s Preparing to unpack .../128-libxt6_1%3a1.2.1-1.1_arm64.deb ... 142s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 143s Selecting previously unselected package libxmu6:arm64. 143s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_arm64.deb ... 143s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 143s Selecting previously unselected package libxpm4:arm64. 143s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_arm64.deb ... 143s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 143s Selecting previously unselected package libxaw7:arm64. 143s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_arm64.deb ... 143s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 143s Selecting previously unselected package libxi6:arm64. 143s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_arm64.deb ... 143s Unpacking libxi6:arm64 (2:1.8.1-1) ... 143s Selecting previously unselected package libzzip-0-13:arm64. 143s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 143s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 143s Selecting previously unselected package node-bootstrap-sass. 143s Preparing to unpack .../134-node-bootstrap-sass_3.4.3-2_all.deb ... 143s Unpacking node-bootstrap-sass (3.4.3-2) ... 143s Selecting previously unselected package node-html5shiv. 143s Preparing to unpack .../135-node-html5shiv_3.7.3+dfsg-5_all.deb ... 143s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 143s Selecting previously unselected package node-normalize.css. 143s Preparing to unpack .../136-node-normalize.css_8.0.1-5_all.deb ... 143s Unpacking node-normalize.css (8.0.1-5) ... 143s Selecting previously unselected package pandoc-data. 143s Preparing to unpack .../137-pandoc-data_3.1.3-1_all.deb ... 143s Unpacking pandoc-data (3.1.3-1) ... 143s Selecting previously unselected package pandoc. 143s Preparing to unpack .../138-pandoc_3.1.3+ds-2_arm64.deb ... 143s Unpacking pandoc (3.1.3+ds-2) ... 144s Selecting previously unselected package pkgconf-bin. 144s Preparing to unpack .../139-pkgconf-bin_1.8.1-2_arm64.deb ... 144s Unpacking pkgconf-bin (1.8.1-2) ... 144s Selecting previously unselected package pkgconf:arm64. 144s Preparing to unpack .../140-pkgconf_1.8.1-2_arm64.deb ... 144s Unpacking pkgconf:arm64 (1.8.1-2) ... 144s Selecting previously unselected package pkg-config:arm64. 144s Preparing to unpack .../141-pkg-config_1.8.1-2_arm64.deb ... 144s Unpacking pkg-config:arm64 (1.8.1-2) ... 144s Selecting previously unselected package zip. 144s Preparing to unpack .../142-zip_3.0-13_arm64.deb ... 144s Unpacking zip (3.0-13) ... 144s Selecting previously unselected package unzip. 144s Preparing to unpack .../143-unzip_6.0-28ubuntu3_arm64.deb ... 144s Unpacking unzip (6.0-28ubuntu3) ... 144s Selecting previously unselected package xdg-utils. 144s Preparing to unpack .../144-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 144s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 144s Selecting previously unselected package r-base-core. 144s Preparing to unpack .../145-r-base-core_4.3.2-1build1_arm64.deb ... 144s Unpacking r-base-core (4.3.2-1build1) ... 144s Selecting previously unselected package liblzma-dev:arm64. 145s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 145s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 145s Selecting previously unselected package r-base-dev. 145s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ... 145s Unpacking r-base-dev (4.3.2-1build1) ... 145s Selecting previously unselected package pkg-r-autopkgtest. 145s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 145s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 145s Selecting previously unselected package r-bioc-biocgenerics. 145s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 145s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 145s Selecting previously unselected package r-bioc-biobase. 145s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 145s Unpacking r-bioc-biobase (2.62.0-1) ... 145s Selecting previously unselected package r-bioc-s4vectors. 145s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 145s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 145s Selecting previously unselected package r-bioc-iranges. 145s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 145s Unpacking r-bioc-iranges (2.36.0-1) ... 145s Selecting previously unselected package r-cran-dbi. 145s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 145s Unpacking r-cran-dbi (1.2.2-1) ... 145s Selecting previously unselected package r-cran-bit. 145s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 145s Unpacking r-cran-bit (4.0.5-1) ... 145s Selecting previously unselected package r-cran-bit64. 145s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 145s Unpacking r-cran-bit64 (4.0.5-1) ... 145s Selecting previously unselected package r-cran-rlang. 145s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 145s Unpacking r-cran-rlang (1.1.3-1) ... 145s Selecting previously unselected package r-cran-cli. 145s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 145s Unpacking r-cran-cli (3.6.2-1) ... 145s Selecting previously unselected package r-cran-glue. 145s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 145s Unpacking r-cran-glue (1.7.0-1) ... 145s Selecting previously unselected package r-cran-lifecycle. 145s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 145s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 145s Selecting previously unselected package r-cran-vctrs. 145s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 145s Unpacking r-cran-vctrs (0.6.5-1) ... 145s Selecting previously unselected package r-cran-blob. 145s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 145s Unpacking r-cran-blob (1.2.4-1) ... 145s Selecting previously unselected package r-cran-fastmap. 145s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 145s Unpacking r-cran-fastmap (1.1.1-1) ... 145s Selecting previously unselected package r-cran-cachem. 145s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 145s Unpacking r-cran-cachem (1.0.8-1) ... 145s Selecting previously unselected package r-cran-memoise. 145s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 145s Unpacking r-cran-memoise (2.0.1-1) ... 145s Selecting previously unselected package r-cran-pkgconfig. 145s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 145s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 145s Selecting previously unselected package r-cran-plogr. 145s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 145s Unpacking r-cran-plogr (0.2.0-3build1) ... 145s Selecting previously unselected package r-cran-cpp11. 146s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 146s Unpacking r-cran-cpp11 (0.4.7-1) ... 146s Selecting previously unselected package r-cran-rsqlite. 146s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 146s Unpacking r-cran-rsqlite (2.3.4-1) ... 146s Selecting previously unselected package r-cran-curl. 146s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 146s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 146s Selecting previously unselected package r-cran-jsonlite. 146s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 146s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 146s Selecting previously unselected package r-cran-mime. 146s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 146s Unpacking r-cran-mime (0.12-1) ... 146s Selecting previously unselected package r-cran-sys. 146s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 146s Unpacking r-cran-sys (3.4.2-1) ... 146s Selecting previously unselected package r-cran-askpass. 146s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 146s Unpacking r-cran-askpass (1.2.0-1) ... 146s Selecting previously unselected package r-cran-openssl. 146s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 146s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 146s Selecting previously unselected package r-cran-r6. 146s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 146s Unpacking r-cran-r6 (2.5.1-1) ... 146s Selecting previously unselected package r-cran-httr. 146s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 146s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 146s Selecting previously unselected package r-cran-png. 146s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 146s Unpacking r-cran-png (0.1-8-1) ... 146s Selecting previously unselected package r-bioc-zlibbioc. 146s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 146s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 146s Selecting previously unselected package r-bioc-xvector. 146s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 146s Unpacking r-bioc-xvector (0.42.0-1) ... 146s Selecting previously unselected package r-cran-bitops. 146s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 146s Unpacking r-cran-bitops (1.0-7-1) ... 146s Selecting previously unselected package r-cran-rcurl. 146s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 146s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 146s Selecting previously unselected package r-bioc-genomeinfodbdata. 146s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 146s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 146s Selecting previously unselected package r-bioc-genomeinfodb. 146s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 146s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 146s Selecting previously unselected package r-cran-crayon. 146s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 146s Unpacking r-cran-crayon (1.5.2-1) ... 146s Selecting previously unselected package r-bioc-biostrings. 146s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 146s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 147s Selecting previously unselected package r-bioc-keggrest. 147s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 147s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 147s Selecting previously unselected package r-bioc-annotationdbi. 147s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 147s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 147s Selecting previously unselected package r-bioc-genomicranges. 147s Preparing to unpack .../188-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 147s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 147s Selecting previously unselected package r-cran-lazyeval. 147s Preparing to unpack .../189-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 147s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 147s Selecting previously unselected package r-bioc-annotationfilter. 147s Preparing to unpack .../190-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 147s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 147s Selecting previously unselected package r-cran-generics. 147s Preparing to unpack .../191-r-cran-generics_0.1.3-1_all.deb ... 147s Unpacking r-cran-generics (0.1.3-1) ... 147s Selecting previously unselected package r-cran-magrittr. 147s Preparing to unpack .../192-r-cran-magrittr_2.0.3-1_arm64.deb ... 147s Unpacking r-cran-magrittr (2.0.3-1) ... 147s Selecting previously unselected package r-cran-fansi. 147s Preparing to unpack .../193-r-cran-fansi_1.0.5-1_arm64.deb ... 147s Unpacking r-cran-fansi (1.0.5-1) ... 147s Selecting previously unselected package r-cran-utf8. 147s Preparing to unpack .../194-r-cran-utf8_1.2.4-1_arm64.deb ... 147s Unpacking r-cran-utf8 (1.2.4-1) ... 147s Selecting previously unselected package r-cran-pillar. 147s Preparing to unpack .../195-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 147s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 147s Selecting previously unselected package r-cran-tibble. 147s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 147s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 147s Selecting previously unselected package r-cran-withr. 147s Preparing to unpack .../197-r-cran-withr_2.5.0-1_all.deb ... 147s Unpacking r-cran-withr (2.5.0-1) ... 147s Selecting previously unselected package r-cran-tidyselect. 147s Preparing to unpack .../198-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 147s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 147s Selecting previously unselected package r-cran-dplyr. 147s Preparing to unpack .../199-r-cran-dplyr_1.1.4-1_arm64.deb ... 147s Unpacking r-cran-dplyr (1.1.4-1) ... 147s Selecting previously unselected package r-cran-purrr. 147s Preparing to unpack .../200-r-cran-purrr_1.0.2-1_arm64.deb ... 147s Unpacking r-cran-purrr (1.0.2-1) ... 147s Selecting previously unselected package r-cran-stringi. 147s Preparing to unpack .../201-r-cran-stringi_1.8.3-1_arm64.deb ... 147s Unpacking r-cran-stringi (1.8.3-1) ... 147s Selecting previously unselected package r-cran-stringr. 147s Preparing to unpack .../202-r-cran-stringr_1.5.1-1_all.deb ... 147s Unpacking r-cran-stringr (1.5.1-1) ... 147s Selecting previously unselected package r-cran-tidyr. 147s Preparing to unpack .../203-r-cran-tidyr_1.3.1-1_arm64.deb ... 147s Unpacking r-cran-tidyr (1.3.1-1) ... 147s Selecting previously unselected package r-cran-dbplyr. 147s Preparing to unpack .../204-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 147s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 147s Selecting previously unselected package r-cran-filelock. 147s Preparing to unpack .../205-r-cran-filelock_1.0.3-1_arm64.deb ... 147s Unpacking r-cran-filelock (1.0.3-1) ... 148s Selecting previously unselected package r-bioc-biocfilecache. 148s Preparing to unpack .../206-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 148s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 148s Selecting previously unselected package r-cran-biocmanager. 148s Preparing to unpack .../207-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 148s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 148s Selecting previously unselected package r-bioc-biocversion. 148s Preparing to unpack .../208-r-bioc-biocversion_3.18.1-1_all.deb ... 148s Unpacking r-bioc-biocversion (3.18.1-1) ... 148s Selecting previously unselected package r-cran-rappdirs. 148s Preparing to unpack .../209-r-cran-rappdirs_0.3.3-1_arm64.deb ... 148s Unpacking r-cran-rappdirs (0.3.3-1) ... 148s Selecting previously unselected package r-cran-yaml. 148s Preparing to unpack .../210-r-cran-yaml_2.3.8-1_arm64.deb ... 148s Unpacking r-cran-yaml (2.3.8-1) ... 148s Selecting previously unselected package r-cran-littler. 148s Preparing to unpack .../211-r-cran-littler_0.3.19-1_arm64.deb ... 148s Unpacking r-cran-littler (0.3.19-1) ... 148s Selecting previously unselected package r-cran-pkgkitten. 148s Preparing to unpack .../212-r-cran-pkgkitten_0.2.3-1_all.deb ... 148s Unpacking r-cran-pkgkitten (0.2.3-1) ... 148s Selecting previously unselected package r-cran-rcpp. 148s Preparing to unpack .../213-r-cran-rcpp_1.0.12-1_arm64.deb ... 148s Unpacking r-cran-rcpp (1.0.12-1) ... 148s Selecting previously unselected package r-cran-later. 148s Preparing to unpack .../214-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 148s Unpacking r-cran-later (1.3.2+dfsg-1) ... 148s Selecting previously unselected package r-cran-promises. 148s Preparing to unpack .../215-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 148s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 148s Selecting previously unselected package r-cran-httpuv. 148s Preparing to unpack .../216-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 148s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 148s Selecting previously unselected package r-cran-xtable. 148s Preparing to unpack .../217-r-cran-xtable_1%3a1.8-4-2_all.deb ... 148s Unpacking r-cran-xtable (1:1.8-4-2) ... 148s Selecting previously unselected package r-cran-base64enc. 148s Preparing to unpack .../218-r-cran-base64enc_0.1-3-3_arm64.deb ... 148s Unpacking r-cran-base64enc (0.1-3-3) ... 148s Selecting previously unselected package r-cran-digest. 148s Preparing to unpack .../219-r-cran-digest_0.6.34-1_arm64.deb ... 148s Unpacking r-cran-digest (0.6.34-1) ... 148s Selecting previously unselected package r-cran-ellipsis. 148s Preparing to unpack .../220-r-cran-ellipsis_0.3.2-2_arm64.deb ... 148s Unpacking r-cran-ellipsis (0.3.2-2) ... 148s Selecting previously unselected package r-cran-htmltools. 148s Preparing to unpack .../221-r-cran-htmltools_0.5.7-1_arm64.deb ... 148s Unpacking r-cran-htmltools (0.5.7-1) ... 148s Selecting previously unselected package r-cran-fontawesome. 148s Preparing to unpack .../222-r-cran-fontawesome_0.5.2-1_all.deb ... 148s Unpacking r-cran-fontawesome (0.5.2-1) ... 148s Selecting previously unselected package r-cran-sourcetools. 148s Preparing to unpack .../223-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 148s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 149s Selecting previously unselected package r-cran-commonmark. 149s Preparing to unpack .../224-r-cran-commonmark_1.9.1-1_arm64.deb ... 149s Unpacking r-cran-commonmark (1.9.1-1) ... 149s Selecting previously unselected package r-cran-jquerylib. 149s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 149s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 149s Selecting previously unselected package r-cran-fs. 149s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 149s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 149s Selecting previously unselected package r-cran-sass. 149s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 149s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 149s Selecting previously unselected package r-cran-bslib. 149s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 149s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 149s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 149s Preparing to unpack .../229-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 149s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 149s Selecting previously unselected package r-cran-shiny. 149s Preparing to unpack .../230-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 149s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 149s Selecting previously unselected package r-cran-evaluate. 149s Preparing to unpack .../231-r-cran-evaluate_0.23-1_all.deb ... 149s Unpacking r-cran-evaluate (0.23-1) ... 149s Selecting previously unselected package r-cran-xfun. 149s Preparing to unpack .../232-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 149s Unpacking r-cran-xfun (0.41+dfsg-1) ... 149s Selecting previously unselected package r-cran-highr. 149s Preparing to unpack .../233-r-cran-highr_0.10+dfsg-1_all.deb ... 149s Unpacking r-cran-highr (0.10+dfsg-1) ... 149s Selecting previously unselected package libjs-mathjax. 149s Preparing to unpack .../234-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 149s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 150s Selecting previously unselected package r-cran-knitr. 150s Preparing to unpack .../235-r-cran-knitr_1.45+dfsg-1_all.deb ... 150s Unpacking r-cran-knitr (1.45+dfsg-1) ... 150s Selecting previously unselected package r-cran-tinytex. 150s Preparing to unpack .../236-r-cran-tinytex_0.49-1_all.deb ... 150s Unpacking r-cran-tinytex (0.49-1) ... 150s Selecting previously unselected package libjs-modernizr. 150s Preparing to unpack .../237-libjs-modernizr_2.6.2+ds1-5_all.deb ... 150s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 150s Selecting previously unselected package r-cran-rmarkdown. 150s Preparing to unpack .../238-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 150s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 150s Selecting previously unselected package r-cran-htmlwidgets. 150s Preparing to unpack .../239-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 150s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 150s Selecting previously unselected package r-cran-crosstalk. 150s Preparing to unpack .../240-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 150s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 150s Selecting previously unselected package r-cran-dt. 150s Preparing to unpack .../241-r-cran-dt_0.31+dfsg-1_all.deb ... 150s Unpacking r-cran-dt (0.31+dfsg-1) ... 150s Selecting previously unselected package r-bioc-interactivedisplaybase. 150s Preparing to unpack .../242-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 150s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 150s Selecting previously unselected package r-bioc-annotationhub. 150s Preparing to unpack .../243-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 150s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 150s Selecting previously unselected package r-bioc-biocio. 150s Preparing to unpack .../244-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 150s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 150s Selecting previously unselected package r-cran-formatr. 150s Preparing to unpack .../245-r-cran-formatr_1.14-1_all.deb ... 150s Unpacking r-cran-formatr (1.14-1) ... 150s Selecting previously unselected package r-cran-lambda.r. 150s Preparing to unpack .../246-r-cran-lambda.r_1.2.4-2build1_all.deb ... 150s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 150s Selecting previously unselected package r-cran-futile.options. 150s Preparing to unpack .../247-r-cran-futile.options_1.0.1-3build1_all.deb ... 150s Unpacking r-cran-futile.options (1.0.1-3build1) ... 150s Selecting previously unselected package r-cran-futile.logger. 150s Preparing to unpack .../248-r-cran-futile.logger_1.4.3-4build1_all.deb ... 150s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 150s Selecting previously unselected package r-cran-snow. 151s Preparing to unpack .../249-r-cran-snow_1%3a0.4.4-2_all.deb ... 151s Unpacking r-cran-snow (1:0.4.4-2) ... 151s Selecting previously unselected package r-cran-codetools. 151s Preparing to unpack .../250-r-cran-codetools_0.2-19-1_all.deb ... 151s Unpacking r-cran-codetools (0.2-19-1) ... 151s Selecting previously unselected package r-cran-bh. 151s Preparing to unpack .../251-r-cran-bh_1.84.0-1_all.deb ... 151s Unpacking r-cran-bh (1.84.0-1) ... 151s Selecting previously unselected package r-bioc-biocparallel. 151s Preparing to unpack .../252-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 151s Unpacking r-bioc-biocparallel (1.36.0-1) ... 151s Selecting previously unselected package r-cran-bookdown. 151s Preparing to unpack .../253-r-cran-bookdown_0.37+dfsg-1_all.deb ... 151s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 151s Selecting previously unselected package tex-common. 151s Preparing to unpack .../254-tex-common_6.18_all.deb ... 151s Unpacking tex-common (6.18) ... 151s Selecting previously unselected package t1utils. 151s Preparing to unpack .../255-t1utils_1.41-4build2_arm64.deb ... 151s Unpacking t1utils (1.41-4build2) ... 151s Selecting previously unselected package texlive-binaries. 151s Preparing to unpack .../256-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 151s Unpacking texlive-binaries (2023.20230311.66589-9) ... 151s Selecting previously unselected package texlive-base. 151s Preparing to unpack .../257-texlive-base_2023.20240207-1_all.deb ... 151s Unpacking texlive-base (2023.20240207-1) ... 152s Selecting previously unselected package texlive-latex-base. 152s Preparing to unpack .../258-texlive-latex-base_2023.20240207-1_all.deb ... 152s Unpacking texlive-latex-base (2023.20240207-1) ... 153s Selecting previously unselected package texlive-bibtex-extra. 153s Preparing to unpack .../259-texlive-bibtex-extra_2023.20240207-1_all.deb ... 153s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 155s Selecting previously unselected package r-bioc-biocstyle. 155s Preparing to unpack .../260-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 155s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 155s Selecting previously unselected package r-cran-xml. 155s Preparing to unpack .../261-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 155s Unpacking r-cran-xml (3.99-0.16.1-1) ... 155s Selecting previously unselected package r-cran-hms. 155s Preparing to unpack .../262-r-cran-hms_1.1.3-1_all.deb ... 155s Unpacking r-cran-hms (1.1.3-1) ... 155s Selecting previously unselected package r-cran-prettyunits. 155s Preparing to unpack .../263-r-cran-prettyunits_1.2.0-1_all.deb ... 155s Unpacking r-cran-prettyunits (1.2.0-1) ... 155s Selecting previously unselected package r-cran-progress. 155s Preparing to unpack .../264-r-cran-progress_1.2.3-1_all.deb ... 155s Unpacking r-cran-progress (1.2.3-1) ... 155s Selecting previously unselected package r-cran-xml2. 155s Preparing to unpack .../265-r-cran-xml2_1.3.6-1_arm64.deb ... 155s Unpacking r-cran-xml2 (1.3.6-1) ... 155s Selecting previously unselected package r-bioc-biomart. 155s Preparing to unpack .../266-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 155s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 156s Selecting previously unselected package r-cran-farver. 156s Preparing to unpack .../267-r-cran-farver_2.1.1-1_arm64.deb ... 156s Unpacking r-cran-farver (2.1.1-1) ... 156s Selecting previously unselected package r-cran-labeling. 156s Preparing to unpack .../268-r-cran-labeling_0.4.3-1_all.deb ... 156s Unpacking r-cran-labeling (0.4.3-1) ... 156s Selecting previously unselected package r-cran-colorspace. 156s Preparing to unpack .../269-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 156s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 156s Selecting previously unselected package r-cran-munsell. 156s Preparing to unpack .../270-r-cran-munsell_0.5.0-2build1_all.deb ... 156s Unpacking r-cran-munsell (0.5.0-2build1) ... 156s Selecting previously unselected package r-cran-rcolorbrewer. 156s Preparing to unpack .../271-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 156s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 156s Selecting previously unselected package r-cran-viridislite. 156s Preparing to unpack .../272-r-cran-viridislite_0.4.2-2_all.deb ... 156s Unpacking r-cran-viridislite (0.4.2-2) ... 156s Selecting previously unselected package r-cran-scales. 156s Preparing to unpack .../273-r-cran-scales_1.3.0-1_all.deb ... 156s Unpacking r-cran-scales (1.3.0-1) ... 156s Selecting previously unselected package r-cran-gtable. 156s Preparing to unpack .../274-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 156s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 156s Selecting previously unselected package r-cran-isoband. 156s Preparing to unpack .../275-r-cran-isoband_0.2.7-1_arm64.deb ... 156s Unpacking r-cran-isoband (0.2.7-1) ... 156s Selecting previously unselected package r-cran-mass. 156s Preparing to unpack .../276-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 156s Unpacking r-cran-mass (7.3-60.0.1-1) ... 156s Selecting previously unselected package r-cran-lattice. 156s Preparing to unpack .../277-r-cran-lattice_0.22-5-1_arm64.deb ... 156s Unpacking r-cran-lattice (0.22-5-1) ... 156s Selecting previously unselected package r-cran-nlme. 156s Preparing to unpack .../278-r-cran-nlme_3.1.164-1_arm64.deb ... 156s Unpacking r-cran-nlme (3.1.164-1) ... 156s Selecting previously unselected package r-cran-matrix. 156s Preparing to unpack .../279-r-cran-matrix_1.6-5-1_arm64.deb ... 156s Unpacking r-cran-matrix (1.6-5-1) ... 156s Selecting previously unselected package r-cran-mgcv. 156s Preparing to unpack .../280-r-cran-mgcv_1.9-1-1_arm64.deb ... 156s Unpacking r-cran-mgcv (1.9-1-1) ... 156s Selecting previously unselected package r-cran-ggplot2. 156s Preparing to unpack .../281-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 156s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 156s Selecting previously unselected package r-cran-cluster. 156s Preparing to unpack .../282-r-cran-cluster_2.1.6-1_arm64.deb ... 156s Unpacking r-cran-cluster (2.1.6-1) ... 157s Selecting previously unselected package r-cran-survival. 157s Preparing to unpack .../283-r-cran-survival_3.5-8-1_arm64.deb ... 157s Unpacking r-cran-survival (3.5-8-1) ... 157s Selecting previously unselected package r-cran-rpart. 157s Preparing to unpack .../284-r-cran-rpart_4.1.23-1_arm64.deb ... 157s Unpacking r-cran-rpart (4.1.23-1) ... 157s Selecting previously unselected package r-cran-nnet. 157s Preparing to unpack .../285-r-cran-nnet_7.3-19-2_arm64.deb ... 157s Unpacking r-cran-nnet (7.3-19-2) ... 157s Selecting previously unselected package r-cran-foreign. 157s Preparing to unpack .../286-r-cran-foreign_0.8.86-1_arm64.deb ... 157s Unpacking r-cran-foreign (0.8.86-1) ... 157s Selecting previously unselected package r-cran-gridextra. 157s Preparing to unpack .../287-r-cran-gridextra_2.3-3build1_all.deb ... 157s Unpacking r-cran-gridextra (2.3-3build1) ... 157s Selecting previously unselected package r-cran-data.table. 157s Preparing to unpack .../288-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 157s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 157s Selecting previously unselected package r-cran-backports. 157s Preparing to unpack .../289-r-cran-backports_1.4.1-1_arm64.deb ... 157s Unpacking r-cran-backports (1.4.1-1) ... 157s Selecting previously unselected package r-cran-checkmate. 157s Preparing to unpack .../290-r-cran-checkmate_2.3.1-1_arm64.deb ... 157s Unpacking r-cran-checkmate (2.3.1-1) ... 157s Selecting previously unselected package r-cran-rstudioapi. 157s Preparing to unpack .../291-r-cran-rstudioapi_0.15.0-1_all.deb ... 157s Unpacking r-cran-rstudioapi (0.15.0-1) ... 157s Selecting previously unselected package r-cran-htmltable. 157s Preparing to unpack .../292-r-cran-htmltable_2.4.2-1_all.deb ... 157s Unpacking r-cran-htmltable (2.4.2-1) ... 157s Selecting previously unselected package r-cran-viridis. 157s Preparing to unpack .../293-r-cran-viridis_0.6.5-1_all.deb ... 157s Unpacking r-cran-viridis (0.6.5-1) ... 157s Selecting previously unselected package r-cran-formula. 157s Preparing to unpack .../294-r-cran-formula_1.2-5-1_all.deb ... 157s Unpacking r-cran-formula (1.2-5-1) ... 157s Selecting previously unselected package r-cran-chron. 157s Preparing to unpack .../295-r-cran-chron_2.3-61-2_arm64.deb ... 157s Unpacking r-cran-chron (2.3-61-2) ... 157s Selecting previously unselected package r-cran-jpeg. 157s Preparing to unpack .../296-r-cran-jpeg_0.1-10-1_arm64.deb ... 157s Unpacking r-cran-jpeg (0.1-10-1) ... 157s Selecting previously unselected package r-cran-deldir. 157s Preparing to unpack .../297-r-cran-deldir_2.0-4-1_arm64.deb ... 157s Unpacking r-cran-deldir (2.0-4-1) ... 157s Selecting previously unselected package r-cran-rcppeigen. 157s Preparing to unpack .../298-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 157s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 158s Selecting previously unselected package r-cran-interp. 158s Preparing to unpack .../299-r-cran-interp_1.1-6-1_arm64.deb ... 158s Unpacking r-cran-interp (1.1-6-1) ... 158s Selecting previously unselected package r-cran-latticeextra. 158s Preparing to unpack .../300-r-cran-latticeextra_0.6-30-1_all.deb ... 158s Unpacking r-cran-latticeextra (0.6-30-1) ... 158s Selecting previously unselected package r-cran-acepack. 158s Preparing to unpack .../301-r-cran-acepack_1.4.2-1_arm64.deb ... 158s Unpacking r-cran-acepack (1.4.2-1) ... 158s Selecting previously unselected package r-cran-hmisc. 158s Preparing to unpack .../302-r-cran-hmisc_5.1-1-1_arm64.deb ... 158s Unpacking r-cran-hmisc (5.1-1-1) ... 158s Selecting previously unselected package r-cran-dichromat. 158s Preparing to unpack .../303-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 158s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 158s Selecting previously unselected package r-cran-matrixstats. 158s Preparing to unpack .../304-r-cran-matrixstats_1.2.0-1_arm64.deb ... 158s Unpacking r-cran-matrixstats (1.2.0-1) ... 158s Selecting previously unselected package r-bioc-matrixgenerics. 158s Preparing to unpack .../305-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 158s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 158s Selecting previously unselected package r-cran-abind. 158s Preparing to unpack .../306-r-cran-abind_1.4-5-2_all.deb ... 158s Unpacking r-cran-abind (1.4-5-2) ... 158s Selecting previously unselected package r-bioc-s4arrays. 158s Preparing to unpack .../307-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 158s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 158s Selecting previously unselected package r-bioc-sparsearray. 158s Preparing to unpack .../308-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 158s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 158s Selecting previously unselected package r-bioc-delayedarray. 158s Preparing to unpack .../309-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 158s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 158s Selecting previously unselected package r-bioc-summarizedexperiment. 158s Preparing to unpack .../310-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 158s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 158s Selecting previously unselected package r-bioc-rhtslib. 158s Preparing to unpack .../311-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 158s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 158s Selecting previously unselected package r-bioc-rsamtools. 158s Preparing to unpack .../312-r-bioc-rsamtools_2.18.0+dfsg-1build1_arm64.deb ... 158s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 158s Selecting previously unselected package r-bioc-genomicalignments. 158s Preparing to unpack .../313-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 158s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 158s Selecting previously unselected package r-cran-rjson. 158s Preparing to unpack .../314-r-cran-rjson_0.2.21-1_arm64.deb ... 158s Unpacking r-cran-rjson (0.2.21-1) ... 159s Selecting previously unselected package r-cran-restfulr. 159s Preparing to unpack .../315-r-cran-restfulr_0.0.15-1_arm64.deb ... 159s Unpacking r-cran-restfulr (0.0.15-1) ... 159s Selecting previously unselected package r-bioc-rtracklayer. 159s Preparing to unpack .../316-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 159s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 159s Selecting previously unselected package r-bioc-genomicfeatures. 159s Preparing to unpack .../317-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 159s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 159s Selecting previously unselected package r-bioc-bsgenome. 159s Preparing to unpack .../318-r-bioc-bsgenome_1.70.2-1_all.deb ... 159s Unpacking r-bioc-bsgenome (1.70.2-1) ... 159s Selecting previously unselected package r-bioc-variantannotation. 159s Preparing to unpack .../319-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 159s Unpacking r-bioc-variantannotation (1.48.1-1) ... 159s Selecting previously unselected package r-bioc-protgenerics. 159s Preparing to unpack .../320-r-bioc-protgenerics_1.34.0-1_all.deb ... 159s Unpacking r-bioc-protgenerics (1.34.0-1) ... 159s Selecting previously unselected package r-bioc-ensembldb. 159s Preparing to unpack .../321-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 159s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 159s Selecting previously unselected package r-bioc-biovizbase. 159s Preparing to unpack .../322-r-bioc-biovizbase_1.50.0-1_arm64.deb ... 159s Unpacking r-bioc-biovizbase (1.50.0-1) ... 160s Selecting previously unselected package r-cran-plyr. 160s Preparing to unpack .../323-r-cran-plyr_1.8.9-1_arm64.deb ... 160s Unpacking r-cran-plyr (1.8.9-1) ... 160s Selecting previously unselected package r-cran-reshape2. 160s Preparing to unpack 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160s Selecting previously unselected package r-cran-clipr. 160s Preparing to unpack .../330-r-cran-clipr_0.8.0-1_all.deb ... 160s Unpacking r-cran-clipr (0.8.0-1) ... 160s Selecting previously unselected package r-cran-tzdb. 160s Preparing to unpack .../331-r-cran-tzdb_0.4.0-2_arm64.deb ... 160s Unpacking r-cran-tzdb (0.4.0-2) ... 160s Selecting previously unselected package r-cran-vroom. 160s Preparing to unpack .../332-r-cran-vroom_1.6.5-1_arm64.deb ... 160s Unpacking r-cran-vroom (1.6.5-1) ... 160s Selecting previously unselected package r-cran-readr. 160s Preparing to unpack .../333-r-cran-readr_2.1.5-1_arm64.deb ... 160s Unpacking r-cran-readr (2.1.5-1) ... 160s Selecting previously unselected package r-cran-haven. 160s Preparing to unpack .../334-r-cran-haven_2.5.4-1_arm64.deb ... 160s Unpacking r-cran-haven (2.5.4-1) ... 160s Selecting previously unselected package r-cran-labelled. 160s Preparing to unpack .../335-r-cran-labelled_2.12.0-2_all.deb ... 160s Unpacking 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/var/lib/texmf/dvips/config/config-paper.ps 167s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 167s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 167s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 168s Setting up r-cran-magrittr (2.0.3-1) ... 168s Setting up r-cran-rappdirs (0.3.3-1) ... 168s Setting up r-cran-filelock (1.0.3-1) ... 168s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 168s Setting up r-cran-littler (0.3.19-1) ... 168s Setting up r-cran-bh (1.84.0-1) ... 168s Setting up r-cran-fs (1.6.3+dfsg-1) ... 168s Setting up r-cran-rcpp (1.0.12-1) ... 168s Setting up r-cran-curl (5.2.0+dfsg-1) ... 168s Setting up r-cran-codetools (0.2-19-1) ... 168s Setting up r-cran-brio (1.1.4-1) ... 168s Setting up r-cran-diffobj (0.3.5-1) ... 168s Setting up r-bioc-biocgenerics (0.48.1-2) ... 168s Setting up r-cran-rlang (1.1.3-1) ... 168s Setting up 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168s Setting up r-cran-mass (7.3-60.0.1-1) ... 168s Setting up r-cran-checkmate (2.3.1-1) ... 168s Setting up r-cran-acepack (1.4.2-1) ... 168s Setting up r-cran-snow (1:0.4.4-2) ... 168s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 168s Setting up r-cran-glue (1.7.0-1) ... 168s Setting up r-cran-foreign (0.8.86-1) ... 168s Setting up r-cran-bit (4.0.5-1) ... 168s Setting up r-cran-xtable (1:1.8-4-2) ... 168s Setting up r-cran-cli (3.6.2-1) ... 168s Setting up gfortran (4:13.2.0-7ubuntu1) ... 168s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 168s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 168s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 168s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 168s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 168s Setting up r-cran-bitops (1.0-7-1) ... 168s Setting up r-bioc-biocversion (3.18.1-1) ... 168s Setting up r-cran-rprojroot (2.0.4-1) ... 168s Setting up r-cran-bit64 (4.0.5-1) ... 168s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 168s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 168s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 168s Setting up r-cran-deldir (2.0-4-1) ... 168s Setting up r-cran-askpass (1.2.0-1) ... 168s Setting up r-cran-fastmap (1.1.1-1) ... 168s Setting up r-cran-png (0.1-8-1) ... 168s Setting up r-bioc-biobase (2.62.0-1) ... 168s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 168s Setting up r-cran-rstudioapi (0.15.0-1) ... 168s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 168s Setting up r-cran-utf8 (1.2.4-1) ... 168s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 168s Setting up r-cran-stringi (1.8.3-1) ... 168s Setting up texlive-latex-base (2023.20240207-1) ... 168s Setting up r-cran-cpp11 (0.4.7-1) ... 168s Setting up r-cran-plyr (1.8.9-1) ... 168s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 168s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 168s Setting up r-cran-isoband (0.2.7-1) ... 168s Setting up r-cran-futile.logger (1.4.3-4build1) ... 168s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 168s Setting up r-cran-later (1.3.2+dfsg-1) ... 168s Setting up r-cran-matrix (1.6-5-1) ... 168s Setting up r-cran-tinytex (0.49-1) ... 168s Setting up r-cran-knitr (1.45+dfsg-1) ... 168s Setting up r-cran-mgcv (1.9-1-1) ... 168s Setting up g++ (4:13.2.0-7ubuntu1) ... 168s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 168s Setting up r-cran-cachem (1.0.8-1) ... 168s Setting up build-essential (12.10ubuntu1) ... 168s Setting up r-bioc-iranges (2.36.0-1) ... 168s Setting up r-cran-rjson (0.2.21-1) ... 168s Setting up r-cran-tzdb (0.4.0-2) ... 168s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 168s Setting up 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up r-cran-pkgload (1.3.4-1) ... 168s Setting up r-cran-vroom (1.6.5-1) ... 168s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 168s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 168s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 168s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 168s Setting up r-cran-rematch2 (2.1.2-2build1) ... 168s Setting up r-cran-rpart (4.1.23-1) ... 168s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 168s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 168s Setting up r-cran-fontawesome (0.5.2-1) ... 168s Setting up r-cran-latticeextra (0.6-30-1) ... 168s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 168s Setting up r-cran-viridis (0.6.5-1) ... 168s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 168s Setting up r-cran-readr (2.1.5-1) ... 168s Setting up r-cran-waldo (0.5.2-1build1) ... 168s Setting up r-cran-tidyr (1.3.1-1) ... 168s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 168s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 168s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 168s Setting up r-cran-patchwork (1.2.0-1) ... 168s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 168s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 168s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 168s Setting up r-cran-haven (2.5.4-1) ... 168s Setting up r-bioc-annotationdbi (1.64.1-1) ... 168s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 168s Setting up r-cran-testthat (3.2.1-1) ... 168s Setting up r-cran-broom (1.0.5+dfsg-1) ... 168s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 168s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 168s Setting up r-cran-labelled (2.12.0-2) ... 168s Setting up r-bioc-genomicalignments (1.38.2-1) ... 168s Setting up r-cran-bookdown (0.37+dfsg-1) ... 168s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 168s Setting up r-bioc-rtracklayer (1.62.0-1) ... 168s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 168s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 168s Setting up r-cran-broom.helpers (1.14.0-2) ... 168s Setting up r-bioc-bsgenome (1.70.2-1) ... 168s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 168s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 168s Setting up r-cran-dt (0.31+dfsg-1) ... 168s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 168s Setting up r-cran-ggstats (0.5.1-2) ... 168s Setting up r-bioc-variantannotation (1.48.1-1) ... 168s Setting up r-cran-ggally (2.2.1-1) ... 168s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 168s Setting up r-cran-htmltable (2.4.2-1) ... 168s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 168s Setting up r-cran-hmisc (5.1-1-1) ... 168s Setting up r-bioc-biovizbase (1.50.0-1) ... 168s Setting up r-bioc-ggbio (1.50.0-1) ... 168s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 168s Setting up autopkgtest-satdep (0) ... 168s Processing triggers for man-db (2.12.0-3) ... 169s Processing triggers for install-info (7.1-3) ... 169s Processing triggers for libc-bin (2.39-0ubuntu2) ... 169s Processing triggers for tex-common (6.18) ... 169s Running updmap-sys. This may take some time... done. 169s Running mktexlsr /var/lib/texmf ... done. 169s Building format(s) --all. 206s This may take some time... done. 224s (Reading database ... 131373 files and directories currently installed.) 224s Removing autopkgtest-satdep (0) ... 225s autopkgtest [13:45:05]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 225s autopkgtest [13:45:05]: test pkg-r-autopkgtest: [----------------------- 225s Test: Try to load the R library ensembldb 225s 225s R version 4.3.2 (2023-10-31) -- "Eye Holes" 225s Copyright (C) 2023 The R Foundation for Statistical Computing 225s Platform: aarch64-unknown-linux-gnu (64-bit) 225s 225s R is free software and comes with ABSOLUTELY NO WARRANTY. 225s You are welcome to redistribute it under certain conditions. 225s Type 'license()' or 'licence()' for distribution details. 225s 225s R is a collaborative project with many contributors. 225s Type 'contributors()' for more information and 225s 'citation()' on how to cite R or R packages in publications. 225s 225s Type 'demo()' for some demos, 'help()' for on-line help, or 225s 'help.start()' for an HTML browser interface to help. 225s Type 'q()' to quit R. 225s 225s > library('ensembldb') 225s Loading required package: BiocGenerics 225s 225s Attaching package: ‘BiocGenerics’ 225s 225s The following objects are masked from ‘package:stats’: 225s 225s IQR, mad, sd, var, xtabs 225s 225s The following objects are masked from ‘package:base’: 225s 225s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 225s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 225s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 225s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 225s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 225s table, tapply, union, unique, unsplit, which.max, which.min 225s 225s Loading required package: GenomicRanges 225s Loading required package: stats4 225s Loading required package: S4Vectors 226s 226s Attaching package: ‘S4Vectors’ 226s 226s The following object is masked from ‘package:utils’: 226s 226s findMatches 226s 226s The following objects are masked from ‘package:base’: 226s 226s expand.grid, I, unname 226s 226s Loading required package: IRanges 227s Loading required package: GenomeInfoDb 228s Loading required package: GenomicFeatures 228s Loading required package: AnnotationDbi 228s Loading required package: Biobase 228s Welcome to Bioconductor 228s 228s Vignettes contain introductory material; view with 228s 'browseVignettes()'. To cite Bioconductor, see 228s 'citation("Biobase")', and for packages 'citation("pkgname")'. 228s 236s Loading required package: AnnotationFilter 236s 236s Attaching package: 'ensembldb' 236s 236s > 236s > 236s The following object is masked from 'package:stats': 236s 236s filter 236s 237s Other tests are currently unsupported! 237s They will be progressively added. 237s autopkgtest [13:45:17]: test pkg-r-autopkgtest: -----------------------] 238s pkg-r-autopkgtest PASS (superficial) 238s autopkgtest [13:45:18]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 238s autopkgtest [13:45:18]: @@@@@@@@@@@@@@@@@@@@ summary 238s pkg-r-autopkgtest PASS (superficial) 249s Creating nova instance adt-noble-arm64-r-bioc-ensembldb-20240316-134120-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...