0s autopkgtest [17:29:16]: starting date and time: 2024-03-16 17:29:16+0000 0s autopkgtest [17:29:16]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:29:16]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.voglzfxn/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-edger --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-22.secgroup --name adt-noble-arm64-r-bioc-edger-20240316-172916-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 143s autopkgtest [17:31:39]: testbed dpkg architecture: arm64 144s autopkgtest [17:31:40]: testbed apt version: 2.7.12 144s autopkgtest [17:31:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 144s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 144s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 145s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 145s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 145s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 145s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 145s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 145s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 145s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 145s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 145s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 145s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 145s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 147s Fetched 9060 kB in 2s (5114 kB/s) 147s Reading package lists... 150s Reading package lists... 151s Building dependency tree... 151s Reading state information... 151s Calculating upgrade... 152s The following packages will be REMOVED: 152s libglib2.0-0 libssl3 152s The following NEW packages will be installed: 152s libglib2.0-0t64 libssl3t64 xdg-user-dirs 152s The following packages have been kept back: 152s curl 152s The following packages will be upgraded: 152s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 152s ubuntu-minimal ubuntu-standard 152s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 152s Need to get 4613 kB of archives. 152s After this operation, 211 kB of additional disk space will be used. 152s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 152s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 153s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 153s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 153s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 153s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 153s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 153s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 153s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 153s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 154s Fetched 4613 kB in 1s (5688 kB/s) 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 154s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 154s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 154s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 154s udisks2 depends on libglib2.0-0 (>= 2.77.0). 154s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 154s python3-gi depends on libglib2.0-0 (>= 2.77.0). 154s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 154s netplan.io depends on libglib2.0-0 (>= 2.70.0). 154s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 154s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 154s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 154s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 154s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 154s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 154s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 154s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 154s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 154s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 154s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 154s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 154s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 154s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 154s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 154s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 154s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 154s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 154s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 154s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 154s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s fwupd depends on libglib2.0-0 (>= 2.79.0). 154s bolt depends on libglib2.0-0 (>= 2.56.0). 154s 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 154s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 154s Selecting previously unselected package libglib2.0-0t64:arm64. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 154s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 154s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 154s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 154s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 154s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 154s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 154s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 154s wget depends on libssl3 (>= 3.0.0). 154s u-boot-tools depends on libssl3 (>= 3.0.0). 154s tnftp depends on libssl3 (>= 3.0.0). 154s tcpdump depends on libssl3 (>= 3.0.0). 154s systemd-resolved depends on libssl3 (>= 3.0.0). 154s systemd depends on libssl3 (>= 3.0.0). 154s sudo depends on libssl3 (>= 3.0.0). 154s sbsigntool depends on libssl3 (>= 3.0.0). 154s rsync depends on libssl3 (>= 3.0.0). 154s python3-cryptography depends on libssl3 (>= 3.0.0). 154s openssh-server depends on libssl3 (>= 3.0.10). 154s openssh-client depends on libssl3 (>= 3.0.10). 154s mtd-utils depends on libssl3 (>= 3.0.0). 154s mokutil depends on libssl3 (>= 3.0.0). 154s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 154s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 154s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 154s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 154s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 154s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 154s libnvme1 depends on libssl3 (>= 3.0.0). 154s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 154s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 154s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 154s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 154s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 154s kmod depends on libssl3 (>= 3.0.0). 154s dhcpcd-base depends on libssl3 (>= 3.0.0). 154s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 154s 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 154s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 155s Selecting previously unselected package libssl3t64:arm64. 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 155s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 155s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 155s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 155s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 155s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 155s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 155s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 155s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 155s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 155s Unpacking ubuntu-minimal (1.536) over (1.535) ... 155s Selecting previously unselected package xdg-user-dirs. 155s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 155s Unpacking xdg-user-dirs (0.18-1) ... 155s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 155s Unpacking ubuntu-standard (1.536) over (1.535) ... 155s Setting up ubuntu-minimal (1.536) ... 155s Setting up xdg-user-dirs (0.18-1) ... 155s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 155s Setting up libtirpc-common (1.3.4+ds-1.1) ... 155s Setting up ubuntu-standard (1.536) ... 155s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 155s No schema files found: doing nothing. 155s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 155s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 155s Setting up openssl (3.0.13-0ubuntu1) ... 155s Setting up readline-common (8.2-3.1) ... 155s Processing triggers for man-db (2.12.0-3) ... 156s Processing triggers for install-info (7.1-3) ... 156s Processing triggers for libc-bin (2.39-0ubuntu2) ... 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 160s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 160s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 160s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 160s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 161s Reading package lists... 161s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s Calculating upgrade... 163s The following packages have been kept back: 163s curl 163s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 163s Reading package lists... 163s Building dependency tree... 163s Reading state information... 164s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 166s autopkgtest [17:32:02]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 167s autopkgtest [17:32:03]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-edger 170s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edger 4.0.16+dfsg-1 (dsc) [2116 B] 170s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edger 4.0.16+dfsg-1 (tar) [1728 kB] 170s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edger 4.0.16+dfsg-1 (diff) [5700 B] 170s gpgv: Signature made Tue Mar 5 13:26:50 2024 UTC 170s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 170s gpgv: issuer "tille@debian.org" 170s gpgv: Can't check signature: No public key 170s dpkg-source: warning: cannot verify inline signature for ./r-bioc-edger_4.0.16+dfsg-1.dsc: no acceptable signature found 170s autopkgtest [17:32:06]: testing package r-bioc-edger version 4.0.16+dfsg-1 170s autopkgtest [17:32:06]: build not needed 172s autopkgtest [17:32:08]: test pkg-r-autopkgtest: preparing testbed 173s Reading package lists... 173s Building dependency tree... 173s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 174s Starting 2 pkgProblemResolver with broken count: 0 174s Done 174s The following additional packages will be installed: 174s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 174s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 174s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 174s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 174s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 174s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 174s gfortran-aarch64-linux-gnu hdf5-helpers icu-devtools javascript-common 174s libaec-dev libaec0 libasan8 libatomic1 libbibtex-parser-perl libblas-dev 174s libblas3 libblosc1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 174s libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 174s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 174s libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 174s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 174s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 174s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 174s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 174s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 174s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 174s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 174s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 174s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 174s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 174s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 174s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 174s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 174s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 174s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 174s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 174s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 174s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 174s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 174s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 174s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle 174s r-bioc-biostrings r-bioc-delayedarray r-bioc-edger r-bioc-genomeinfodb 174s r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 174s r-bioc-limma r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhdf5 174s r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors 174s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 174s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 174s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 174s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-clipr 174s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 174s r-cran-dbi r-cran-digest r-cran-dotcall64 r-cran-ellipsis r-cran-evaluate 174s r-cran-fansi r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-future 174s r-cran-future.apply r-cran-generics r-cran-globals r-cran-glue r-cran-highr 174s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib 174s r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle 174s r-cran-listenv r-cran-littler r-cran-locfit r-cran-magrittr r-cran-matrix 174s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 174s r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 174s r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-progressr 174s r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcppeigen 174s r-cran-rcurl r-cran-readr r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 174s r-cran-sass r-cran-seuratobject r-cran-shiny r-cran-sourcetools r-cran-sp 174s r-cran-spam r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 174s r-cran-tibble r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 174s r-cran-vctrs r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml 174s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 174s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 174s zlib1g-dev 174s Suggested packages: 174s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 174s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 174s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 174s | lighttpd | httpd liblapack-doc glibc-doc libcurl4-doc libidn-dev 174s libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libhdf5-doc icu-doc 174s libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc 174s liblzma-doc ncurses-doc readline-doc libssl-doc libstdc++-13-doc tcl8.6 174s tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 174s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 174s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 174s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 174s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 174s r-bioc-go.db r-cran-runit r-bioc-graph r-bioc-all r-bioc-rsamtools 174s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-bioc-bsgenome 174s r-bioc-genomicfeatures r-bioc-biocparallel r-bioc-hdf5array 174s r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-cran-r.utils 174s r-cran-data.table r-bioc-genomicalignments r-bioc-rtracklayer r-bioc-gviz 174s r-bioc-variantannotation r-bioc-annotationhub r-bioc-dexseq r-cran-markdown 174s r-cran-biasedurn r-cran-ellipse r-cran-gplots r-cran-mass 174s r-bioc-sparsematrixstats r-cran-testthat r-cran-bench r-cran-dplyr 174s r-cran-ggplot2 r-cran-mockery r-cran-tinytest r-bioc-shortread 174s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-rstudioapi r-cran-rmysql 174s r-cran-lubridate r-cran-getopt r-cran-interp r-cran-gam r-cran-formattable 174s r-cran-nanotime r-cran-palmerpenguins r-cran-scales r-cran-survival 174s r-cran-units r-cran-vdiffr r-cran-inline r-cran-sf r-cran-spelling 174s r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild r-cran-pkgload 174s r-cran-purrr r-cran-tidyr r-cran-plm r-cran-zoo debhelper ghostscript gv 174s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 174s hintview texlive-latex-base-doc wp2latex 174s Recommended packages: 174s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 174s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 174s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 174s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-xml2 r-cran-webshot 174s r-cran-ggplot2 r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery 174s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 174s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales 174s r-cran-spelling r-cran-webutils r-cran-rhpcblasctl r-cran-rcolorbrewer 174s r-cran-roxygen2 r-cran-unitizer r-cran-dplyr r-cran-rsvg r-cran-r.rsp 174s r-cran-markdown r-cran-pkgload r-cran-waldo r-cran-cairo r-cran-ragg 174s r-cran-jpeg r-cran-sf r-cran-formatr r-cran-gridsvg r-cran-magick 174s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 174s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.utils 174s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-pbmcapply 174s r-cran-purrr r-cran-foreach r-cran-plyr r-cran-furrr r-cran-xml 174s r-cran-usethis r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh 174s r-cran-rvest r-cran-gstat r-cran-deldir r-cran-terra r-cran-raster 174s r-cran-fields r-cran-truncdist r-cran-data.table r-cran-mockr 174s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv r-cran-runit 174s lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 174s x11-utils x11-xserver-utils 174s The following packages will be REMOVED: 174s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 174s The following NEW packages will be installed: 174s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 174s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 174s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 174s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 174s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 174s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 174s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 174s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 174s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libbz2-dev libc-dev-bin 174s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 174s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 174s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 174s libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 174s libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 libicu-dev 174s libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 174s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 174s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 174s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 174s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 174s libjs-popper.js libjs-prettify libjs-sifter.js 174s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 174s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 174s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 174s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 174s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 174s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 174s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 174s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 174s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 174s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 174s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 174s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 174s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 174s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle 174s r-bioc-biostrings r-bioc-delayedarray r-bioc-edger r-bioc-genomeinfodb 174s r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 174s r-bioc-limma r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhdf5 174s r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors 174s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 174s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 174s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 174s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-clipr 174s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 174s r-cran-dbi r-cran-digest r-cran-dotcall64 r-cran-ellipsis r-cran-evaluate 174s r-cran-fansi r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-future 174s r-cran-future.apply r-cran-generics r-cran-globals r-cran-glue r-cran-highr 174s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib 174s r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle 174s r-cran-listenv r-cran-littler r-cran-locfit r-cran-magrittr r-cran-matrix 174s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 174s r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 174s r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-progressr 174s r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcppeigen 174s r-cran-rcurl r-cran-readr r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 174s r-cran-sass r-cran-seuratobject r-cran-shiny r-cran-sourcetools r-cran-sp 174s r-cran-spam r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 174s r-cran-tibble r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 174s r-cran-vctrs r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml 174s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 174s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 174s zlib1g-dev 174s The following packages will be upgraded: 174s curl 175s 1 upgraded, 292 newly installed, 5 to remove and 0 not upgraded. 175s Need to get 464 MB/464 MB of archives. 175s After this operation, 1581 MB of additional disk space will be used. 175s Get:1 /tmp/autopkgtest.cNDEbT/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [820 B] 175s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 175s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 175s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 175s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 175s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 175s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 175s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 175s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 175s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 175s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 175s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 175s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 175s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 175s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 175s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 175s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 176s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 176s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 176s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 176s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 176s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 176s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 176s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 176s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 176s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 176s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 176s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 176s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 176s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 176s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 176s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 176s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 176s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 176s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 176s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 177s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 177s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 177s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 177s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 177s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 177s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 177s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 177s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 177s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 177s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 177s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 177s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 177s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 177s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 177s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 177s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 177s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 177s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 177s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 177s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 177s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 hdf5-helpers arm64 1.10.10+repack-3ubuntu1 [15.5 kB] 177s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 177s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 177s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 177s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 177s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 177s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 177s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 177s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 177s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 177s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 177s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 177s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 177s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 177s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 177s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 177s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 177s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu7 [454 kB] 177s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 177s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 177s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 177s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 177s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 177s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 178s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-cpp-103-1 arm64 1.10.10+repack-3ubuntu1 [120 kB] 178s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-fortran-102 arm64 1.10.10+repack-3ubuntu1 [86.3 kB] 178s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 178s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.10+repack-3ubuntu1 [30.7 kB] 178s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-cpp-100 arm64 1.10.10+repack-3ubuntu1 [10.7 kB] 178s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 178s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 178s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 178s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 178s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 178s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 178s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 178s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl-dev arm64 3.0.13-0ubuntu1 [2335 kB] 178s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-dev arm64 1.10.10+repack-3ubuntu1 [3036 kB] 178s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 178s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 178s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 178s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 178s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 178s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 178s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 178s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 178s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 179s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 179s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 179s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 179s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 179s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 179s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 179s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 179s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 179s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 179s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 179s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 179s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 179s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 179s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 179s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 179s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 179s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 179s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 179s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 179s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 179s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 179s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 179s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 179s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 179s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 179s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 179s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 179s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 179s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 179s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 179s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 179s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 179s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 179s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 179s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 179s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 179s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 179s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 179s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 179s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 179s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 179s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 179s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 179s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 179s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 179s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 179s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 179s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 179s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 179s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 179s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 179s Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 179s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 180s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 180s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 180s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 180s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 180s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 180s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 180s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 181s Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 181s Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 181s Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 181s Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 181s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 181s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 181s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 181s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 182s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 182s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 182s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 182s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 182s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 182s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 182s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 182s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 182s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 182s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 182s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 182s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 182s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 182s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 182s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 182s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 182s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 182s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 182s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 182s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 182s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 182s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 182s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 182s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 182s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 182s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 182s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 182s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 182s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 182s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 182s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 182s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 183s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 184s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 184s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 184s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 184s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 184s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 184s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 184s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 184s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 184s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 184s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 184s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 184s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 184s Get:217 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 185s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 185s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 185s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 185s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 185s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 185s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 185s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 185s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 185s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 185s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 185s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 185s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 185s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 185s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 185s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 185s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 185s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 185s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 185s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 185s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 185s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 185s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 185s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 185s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 185s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 185s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 185s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 185s Get:245 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 185s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 186s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 186s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 186s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 189s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 189s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 189s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 189s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 189s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 189s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 189s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 189s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 189s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 189s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 189s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 190s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 190s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 190s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 190s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 192s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5lib arm64 1.24.2+dfsg-1 [96.1 kB] 192s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5filters arm64 1.14.1+dfsg-3 [135 kB] 192s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5 arm64 2.46.1+dfsg-1 [805 kB] 192s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 192s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 192s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 192s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dotcall64 arm64 1.1-1-1 [38.5 kB] 192s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 192s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-globals all 0.16.2-1 [117 kB] 192s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 192s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-parallelly arm64 1.37.1-1 [364 kB] 192s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 192s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 192s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 192s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 192s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 192s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 192s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 192s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 192s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progressr all 0.14.0-1 [338 kB] 192s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 192s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 193s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 193s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 193s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 193s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 193s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 193s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spam arm64 2.10-0-1 [2759 kB] 193s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-seuratobject arm64 5.0.1-1 [1731 kB] 195s Preconfiguring packages ... 195s Fetched 464 MB in 18s (25.4 MB/s) 195s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 195s wget depends on libpsl5 (>= 0.16.0). 195s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 195s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 195s 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 195s Removing libpsl5:arm64 (0.21.2-1build1) ... 195s Selecting previously unselected package libpsl5t64:arm64. 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 195s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 195s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 195s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 195s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 195s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 195s Selecting previously unselected package libcurl4t64:arm64. 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 195s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 195s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 195s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 195s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 195s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 195s 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 195s Removing libpng16-16:arm64 (1.6.43-1) ... 195s Selecting previously unselected package libpng16-16t64:arm64. 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 195s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 195s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 195s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 195s parted depends on libreadline8 (>= 6.0). 195s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 195s gpgsm depends on libreadline8 (>= 6.0). 195s gpgconf depends on libreadline8 (>= 6.0). 195s gpg depends on libreadline8 (>= 6.0). 195s gawk depends on libreadline8 (>= 6.0). 195s fdisk depends on libreadline8 (>= 6.0). 195s 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 195s Removing libreadline8:arm64 (8.2-3) ... 195s Selecting previously unselected package libreadline8t64:arm64. 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 195s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 195s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 195s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 195s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 195s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 195s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 196s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 196s lsof depends on libtirpc3 (>= 1.0.2). 196s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 196s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 196s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 196s iproute2 depends on libtirpc3 (>= 1.0.2). 196s 196s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 196s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 196s Selecting previously unselected package libtirpc3t64:arm64. 196s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 196s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 196s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 196s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 196s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 196s Selecting previously unselected package libc-dev-bin. 196s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 196s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 196s Selecting previously unselected package linux-libc-dev:arm64. 196s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 196s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 196s Selecting previously unselected package libcrypt-dev:arm64. 196s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 196s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 196s Selecting previously unselected package libtirpc-dev:arm64. 196s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 196s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 196s Selecting previously unselected package libnsl-dev:arm64. 196s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 196s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 196s Selecting previously unselected package rpcsvc-proto. 196s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 196s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 196s Selecting previously unselected package libc6-dev:arm64. 196s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 196s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 196s Selecting previously unselected package libisl23:arm64. 196s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 196s Unpacking libisl23:arm64 (0.26-3) ... 196s Selecting previously unselected package libmpc3:arm64. 196s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 196s Unpacking libmpc3:arm64 (1.3.1-1) ... 196s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 196s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 196s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package cpp-13. 197s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 197s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package cpp-aarch64-linux-gnu. 197s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 197s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 197s Selecting previously unselected package cpp. 197s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 197s Unpacking cpp (4:13.2.0-7ubuntu1) ... 197s Selecting previously unselected package libcc1-0:arm64. 197s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libgomp1:arm64. 197s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libitm1:arm64. 197s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libatomic1:arm64. 197s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libasan8:arm64. 197s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package liblsan0:arm64. 197s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libtsan2:arm64. 197s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libubsan1:arm64. 197s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libhwasan0:arm64. 197s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libgcc-13-dev:arm64. 197s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 197s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 198s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package gcc-13. 198s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package gcc-aarch64-linux-gnu. 198s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 198s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package gcc. 198s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 198s Unpacking gcc (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package libstdc++-13-dev:arm64. 198s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package g++-13-aarch64-linux-gnu. 199s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package g++-13. 199s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking g++-13 (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package g++-aarch64-linux-gnu. 199s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 199s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 199s Selecting previously unselected package g++. 199s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 199s Unpacking g++ (4:13.2.0-7ubuntu1) ... 199s Selecting previously unselected package build-essential. 199s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 199s Unpacking build-essential (12.10ubuntu1) ... 199s Selecting previously unselected package dctrl-tools. 199s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 199s Unpacking dctrl-tools (2.24-3build2) ... 199s Selecting previously unselected package fonts-dejavu-mono. 199s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 199s Unpacking fonts-dejavu-mono (2.37-8) ... 199s Selecting previously unselected package fonts-dejavu-core. 199s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 199s Unpacking fonts-dejavu-core (2.37-8) ... 199s Selecting previously unselected package fontconfig-config. 199s Preparing to unpack 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fonts-lmodern. 200s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 200s Unpacking fonts-lmodern (2.005-1) ... 200s Selecting previously unselected package fonts-mathjax. 200s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 200s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 200s Selecting previously unselected package libgfortran5:arm64. 200s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 200s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 200s Selecting previously unselected package libgfortran-13-dev:arm64. 200s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 200s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 200s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 200s Selecting previously unselected package gfortran-13. 200s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 200s Selecting previously unselected package gfortran-aarch64-linux-gnu. 200s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 200s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 200s Selecting previously unselected package gfortran. 200s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 200s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 200s Selecting previously unselected package hdf5-helpers. 200s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_arm64.deb ... 200s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 201s Selecting previously unselected package icu-devtools. 201s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_arm64.deb ... 201s Unpacking icu-devtools (74.2-1ubuntu1) ... 201s Selecting previously unselected package javascript-common. 201s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 201s Unpacking javascript-common (11+nmu1) ... 201s Selecting previously unselected package libaec0:arm64. 201s Preparing to unpack .../053-libaec0_1.1.2-1_arm64.deb ... 201s Unpacking libaec0:arm64 (1.1.2-1) ... 201s Selecting previously unselected package libio-string-perl. 201s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 201s Unpacking libio-string-perl (1.08-4) ... 201s Selecting previously unselected package liblatex-tounicode-perl. 201s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 201s Unpacking liblatex-tounicode-perl (0.54-2) ... 201s Selecting previously unselected package libbibtex-parser-perl. 201s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 201s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 201s Selecting previously unselected package libblas3:arm64. 201s Preparing to unpack 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... 201s Selecting previously unselected package libxcb-render0:arm64. 201s Preparing to unpack .../063-libxcb-render0_1.15-1_arm64.deb ... 201s Unpacking libxcb-render0:arm64 (1.15-1) ... 201s Selecting previously unselected package libxcb-shm0:arm64. 201s Preparing to unpack .../064-libxcb-shm0_1.15-1_arm64.deb ... 201s Unpacking libxcb-shm0:arm64 (1.15-1) ... 201s Selecting previously unselected package libxrender1:arm64. 201s Preparing to unpack .../065-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 201s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 201s Selecting previously unselected package libcairo2:arm64. 201s Preparing to unpack .../066-libcairo2_1.18.0-1_arm64.deb ... 201s Unpacking libcairo2:arm64 (1.18.0-1) ... 201s Selecting previously unselected package libcurl4-openssl-dev:arm64. 201s Preparing to unpack .../067-libcurl4-openssl-dev_8.5.0-2ubuntu7_arm64.deb ... 201s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 201s Selecting previously unselected package libdatrie1:arm64. 202s Preparing to unpack .../068-libdatrie1_0.2.13-3_arm64.deb ... 202s Unpacking libdatrie1:arm64 (0.2.13-3) ... 202s Selecting previously unselected package libdeflate0:arm64. 202s Preparing to unpack .../069-libdeflate0_1.19-1_arm64.deb ... 202s Unpacking libdeflate0:arm64 (1.19-1) ... 202s Selecting previously unselected package libgraphite2-3:arm64. 202s Preparing to unpack .../070-libgraphite2-3_1.3.14-2_arm64.deb ... 202s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 202s Selecting previously unselected package libharfbuzz0b:arm64. 202s Preparing to unpack .../071-libharfbuzz0b_8.3.0-2_arm64.deb ... 202s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 202s Selecting previously unselected package libsz2:arm64. 202s Preparing to unpack .../072-libsz2_1.1.2-1_arm64.deb ... 202s Unpacking libsz2:arm64 (1.1.2-1) ... 202s Selecting previously unselected package libhdf5-103-1:arm64. 202s Preparing to unpack .../073-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 202s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 202s Selecting previously unselected package libhdf5-cpp-103-1:arm64. 203s Preparing to unpack .../074-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 203s Unpacking libhdf5-cpp-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 203s Selecting previously unselected package libhdf5-fortran-102:arm64. 203s Preparing to unpack .../075-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_arm64.deb ... 203s Unpacking libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 203s Selecting previously unselected package libhdf5-hl-100:arm64. 203s Preparing to unpack .../076-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 203s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 203s Selecting previously unselected package libhdf5-hl-fortran-100:arm64. 203s Preparing to unpack .../077-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_arm64.deb ... 203s Unpacking libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 203s Selecting previously unselected package libhdf5-hl-cpp-100:arm64. 203s Preparing to unpack .../078-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_arm64.deb ... 203s Unpacking libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 203s Selecting previously unselected package zlib1g-dev:arm64. 203s Preparing to unpack .../079-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 203s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 203s Selecting previously unselected package libjpeg-turbo8:arm64. 203s Preparing to unpack .../080-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 203s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 203s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 203s Preparing to unpack .../081-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 203s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 203s Selecting previously unselected package libjpeg8:arm64. 204s Preparing to unpack .../082-libjpeg8_8c-2ubuntu11_arm64.deb ... 204s Unpacking libjpeg8:arm64 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package x11-common. 204s Preparing to unpack .../088-x11-common_1%3a7.7+23ubuntu2_all.deb ... 204s Unpacking x11-common (1:7.7+23ubuntu2) ... 204s Selecting previously unselected package libice6:arm64. 204s Preparing to unpack .../089-libice6_2%3a1.0.10-1build2_arm64.deb ... 204s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 204s Selecting previously unselected package libicu-dev:arm64. 204s Preparing to unpack .../090-libicu-dev_74.2-1ubuntu1_arm64.deb ... 204s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 204s Selecting previously unselected package libjs-bootstrap. 204s Preparing to unpack .../091-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 204s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 204s Selecting previously unselected package libjs-popper.js. 204s Preparing to unpack .../092-libjs-popper.js_1.16.1+ds-6_all.deb ... 204s Unpacking libjs-popper.js (1.16.1+ds-6) ... 204s Selecting previously unselected package libjs-bootstrap4. 204s Preparing to unpack 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libjs-jquery-datatables (1.11.5+dfsg-2) ... 205s Selecting previously unselected package libjs-sifter.js. 205s Preparing to unpack .../099-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 205s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 205s Selecting previously unselected package libjs-microplugin.js. 205s Preparing to unpack .../100-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 205s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 205s Selecting previously unselected package libjs-jquery-selectize.js. 205s Preparing to unpack .../101-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 205s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 205s Selecting previously unselected package libjs-jquery-ui. 205s Preparing to unpack .../102-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 205s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 205s Selecting previously unselected package libjs-json. 205s Preparing to unpack .../103-libjs-json_0~20221030+~1.0.8-1_all.deb ... 205s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 205s Selecting previously unselected package libjs-lunr. 205s Preparing to unpack .../104-libjs-lunr_2.3.9~dfsg-2_all.deb ... 205s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 205s Selecting previously unselected package libjs-prettify. 205s Preparing to unpack .../105-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 205s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 205s Selecting previously unselected package libkpathsea6:arm64. 205s Preparing to unpack .../106-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 205s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 205s Selecting previously unselected package liblapack3:arm64. 205s Preparing to unpack .../107-liblapack3_3.12.0-3_arm64.deb ... 205s Unpacking liblapack3:arm64 (3.12.0-3) ... 205s Selecting previously unselected package liblapack-dev:arm64. 205s Preparing to unpack .../108-liblapack-dev_3.12.0-3_arm64.deb ... 205s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 205s Selecting previously unselected package liblerc4:arm64. 205s Preparing to unpack .../109-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 205s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 205s Selecting previously unselected package liblua5.4-0:arm64. 205s Preparing to unpack .../110-liblua5.4-0_5.4.6-3_arm64.deb ... 205s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 205s Selecting previously unselected package libncurses-dev:arm64. 205s Preparing to unpack .../111-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 205s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 205s Selecting previously unselected package libthai-data. 205s Preparing to unpack .../112-libthai-data_0.1.29-2_all.deb ... 205s Unpacking libthai-data (0.1.29-2) ... 206s Selecting previously unselected package libthai0:arm64. 206s Preparing to unpack .../113-libthai0_0.1.29-2_arm64.deb ... 206s Unpacking libthai0:arm64 (0.1.29-2) ... 206s Selecting previously unselected package libpango-1.0-0:arm64. 206s Preparing to unpack .../114-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 206s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 206s Selecting previously unselected package libpangoft2-1.0-0:arm64. 206s Preparing to unpack .../115-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 206s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 206s Selecting previously unselected package libpangocairo-1.0-0:arm64. 206s Preparing to unpack .../116-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 206s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 206s Selecting previously unselected package libpaper1:arm64. 206s Preparing to unpack .../117-libpaper1_1.1.29_arm64.deb ... 206s Unpacking libpaper1:arm64 (1.1.29) ... 206s Selecting previously unselected package libpaper-utils. 206s Preparing to unpack .../118-libpaper-utils_1.1.29_arm64.deb ... 206s Unpacking libpaper-utils (1.1.29) ... 206s Selecting previously unselected package libpcre2-16-0:arm64. 206s Preparing to unpack .../119-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 206s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 206s Selecting previously unselected package libpcre2-32-0:arm64. 206s Preparing to unpack .../120-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 206s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 206s Selecting previously unselected package libpcre2-posix3:arm64. 206s Preparing to unpack .../121-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 206s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 206s Selecting previously unselected package libpcre2-dev:arm64. 206s Preparing to unpack .../122-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 206s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 206s Selecting previously unselected package libpkgconf3:arm64. 206s Preparing to unpack .../123-libpkgconf3_1.8.1-2_arm64.deb ... 206s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 206s Selecting previously unselected package libpng-dev:arm64. 206s Preparing to unpack .../124-libpng-dev_1.6.43-3_arm64.deb ... 206s Unpacking libpng-dev:arm64 (1.6.43-3) ... 206s Selecting previously unselected package libpotrace0:arm64. 206s Preparing to unpack .../125-libpotrace0_1.16-2_arm64.deb ... 206s Unpacking libpotrace0:arm64 (1.16-2) ... 206s Selecting previously unselected package libptexenc1:arm64. 206s Preparing to unpack .../126-libptexenc1_2023.20230311.66589-9_arm64.deb ... 206s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 206s Selecting previously unselected package libreadline-dev:arm64. 206s Preparing to unpack .../127-libreadline-dev_8.2-3.1_arm64.deb ... 206s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 206s Selecting previously unselected package libsharpyuv0:arm64. 206s Preparing to unpack .../128-libsharpyuv0_1.3.2-0.4_arm64.deb ... 206s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 206s Selecting previously unselected package libsm6:arm64. 206s Preparing to unpack .../129-libsm6_2%3a1.2.3-1build2_arm64.deb ... 206s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 206s Selecting previously unselected package libsynctex2:arm64. 207s Preparing to unpack .../130-libsynctex2_2023.20230311.66589-9_arm64.deb ... 207s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 207s Selecting previously unselected package libtcl8.6:arm64. 207s Preparing to unpack .../131-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 207s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 207s Selecting previously unselected package libteckit0:arm64. 207s Preparing to unpack .../132-libteckit0_2.5.12+ds1-1_arm64.deb ... 207s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 207s Selecting previously unselected package libtexlua53-5:arm64. 207s Preparing to unpack .../133-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 207s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 207s Selecting previously unselected package libjbig0:arm64. 207s Preparing to unpack .../134-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 207s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 207s Selecting previously unselected package libwebp7:arm64. 207s Preparing to unpack .../135-libwebp7_1.3.2-0.4_arm64.deb ... 207s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 207s Selecting previously unselected package libtiff6:arm64. 207s Preparing to unpack .../136-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 207s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 207s Selecting previously unselected package libxft2:arm64. 207s Preparing to unpack .../137-libxft2_2.3.6-1_arm64.deb ... 207s Unpacking libxft2:arm64 (2.3.6-1) ... 207s Selecting previously unselected package libxss1:arm64. 207s Preparing to unpack .../138-libxss1_1%3a1.2.3-1build2_arm64.deb ... 207s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 207s Selecting previously unselected package libtk8.6:arm64. 207s Preparing to unpack .../139-libtk8.6_8.6.13-2_arm64.deb ... 207s Unpacking libtk8.6:arm64 (8.6.13-2) ... 207s Selecting previously unselected package libxt6t64:arm64. 207s Preparing to unpack .../140-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 207s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 208s Selecting previously unselected package libxmu6:arm64. 208s Preparing to unpack .../141-libxmu6_2%3a1.1.3-3_arm64.deb ... 208s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 208s Selecting previously unselected package libxpm4:arm64. 208s Preparing to unpack .../142-libxpm4_1%3a3.5.17-1_arm64.deb ... 208s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 208s Selecting previously unselected package libxaw7:arm64. 208s Preparing to unpack .../143-libxaw7_2%3a1.0.14-1_arm64.deb ... 208s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 208s Selecting previously unselected package libxi6:arm64. 208s Preparing to unpack .../144-libxi6_2%3a1.8.1-1_arm64.deb ... 208s Unpacking libxi6:arm64 (2:1.8.1-1) ... 208s Selecting previously unselected package libzzip-0-13:arm64. 208s Preparing to unpack .../145-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 208s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 208s Selecting previously unselected package zip. 208s Preparing to unpack .../146-zip_3.0-13_arm64.deb ... 208s Unpacking zip (3.0-13) ... 208s Selecting previously unselected package unzip. 208s Preparing to unpack .../147-unzip_6.0-28ubuntu3_arm64.deb ... 208s Unpacking unzip (6.0-28ubuntu3) ... 208s Selecting previously unselected package xdg-utils. 208s Preparing to unpack .../148-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 208s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 208s Selecting previously unselected package r-base-core. 208s Preparing to unpack .../149-r-base-core_4.3.3-2build1_arm64.deb ... 208s Unpacking r-base-core (4.3.3-2build1) ... 208s Selecting previously unselected package r-cran-littler. 208s Preparing to unpack .../150-r-cran-littler_0.3.19-1_arm64.deb ... 208s Unpacking r-cran-littler (0.3.19-1) ... 209s Selecting previously unselected package littler. 209s Preparing to unpack .../151-littler_0.3.19-1_all.deb ... 209s Unpacking littler (0.3.19-1) ... 209s Selecting previously unselected package node-bootstrap-sass. 209s Preparing to unpack .../152-node-bootstrap-sass_3.4.3-2_all.deb ... 209s Unpacking node-bootstrap-sass (3.4.3-2) ... 209s Selecting previously unselected package node-html5shiv. 209s Preparing to unpack .../153-node-html5shiv_3.7.3+dfsg-5_all.deb ... 209s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 209s Selecting previously unselected package node-normalize.css. 209s Preparing to unpack .../154-node-normalize.css_8.0.1-5_all.deb ... 209s Unpacking node-normalize.css (8.0.1-5) ... 209s Selecting previously unselected package pandoc-data. 209s Preparing to unpack .../155-pandoc-data_3.1.3-1_all.deb ... 209s Unpacking pandoc-data (3.1.3-1) ... 209s Selecting previously unselected package pandoc. 209s Preparing to unpack .../156-pandoc_3.1.3+ds-2_arm64.deb ... 209s Unpacking pandoc (3.1.3+ds-2) ... 210s Selecting previously unselected package pkgconf-bin. 210s Preparing to unpack .../157-pkgconf-bin_1.8.1-2_arm64.deb ... 210s Unpacking pkgconf-bin (1.8.1-2) ... 210s Selecting previously unselected package pkgconf:arm64. 210s Preparing to unpack .../158-pkgconf_1.8.1-2_arm64.deb ... 210s Unpacking pkgconf:arm64 (1.8.1-2) ... 210s Selecting previously unselected package pkg-config:arm64. 210s Preparing to unpack .../159-pkg-config_1.8.1-2_arm64.deb ... 210s Unpacking pkg-config:arm64 (1.8.1-2) ... 210s Selecting previously unselected package liblzma-dev:arm64. 210s Preparing to unpack .../160-liblzma-dev_5.4.5-0.3_arm64.deb ... 210s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 210s Selecting previously unselected package r-base-dev. 210s Preparing to unpack .../161-r-base-dev_4.3.3-2build1_all.deb ... 210s Unpacking r-base-dev (4.3.3-2build1) ... 210s Selecting previously unselected package pkg-r-autopkgtest. 210s Preparing to unpack .../162-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 210s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 210s Selecting previously unselected package r-bioc-biocgenerics. 210s Preparing to unpack .../163-r-bioc-biocgenerics_0.48.1-2_all.deb ... 210s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 210s Selecting previously unselected package r-bioc-biobase. 210s Preparing to unpack .../164-r-bioc-biobase_2.62.0-1_arm64.deb ... 210s Unpacking r-bioc-biobase (2.62.0-1) ... 210s Selecting previously unselected package r-bioc-s4vectors. 210s Preparing to unpack .../165-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 210s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 210s Selecting previously unselected package r-bioc-iranges. 210s Preparing to unpack .../166-r-bioc-iranges_2.36.0-1_arm64.deb ... 210s Unpacking r-bioc-iranges (2.36.0-1) ... 210s Selecting previously unselected package r-cran-dbi. 210s Preparing to unpack .../167-r-cran-dbi_1.2.2-1_all.deb ... 210s Unpacking r-cran-dbi (1.2.2-1) ... 210s Selecting previously unselected package r-cran-bit. 211s Preparing to unpack .../168-r-cran-bit_4.0.5-1_arm64.deb ... 211s Unpacking r-cran-bit (4.0.5-1) ... 211s Selecting previously unselected package r-cran-bit64. 211s Preparing to unpack .../169-r-cran-bit64_4.0.5-1_arm64.deb ... 211s Unpacking r-cran-bit64 (4.0.5-1) ... 211s Selecting previously unselected package r-cran-rlang. 211s Preparing to unpack .../170-r-cran-rlang_1.1.3-1_arm64.deb ... 211s Unpacking r-cran-rlang (1.1.3-1) ... 211s Selecting previously unselected package r-cran-cli. 211s Preparing to unpack .../171-r-cran-cli_3.6.2-1_arm64.deb ... 211s Unpacking r-cran-cli (3.6.2-1) ... 211s Selecting previously unselected package r-cran-glue. 211s Preparing to unpack .../172-r-cran-glue_1.7.0-1_arm64.deb ... 211s Unpacking r-cran-glue (1.7.0-1) ... 211s Selecting previously unselected package r-cran-lifecycle. 211s Preparing to unpack .../173-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 211s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 211s Selecting previously unselected package r-cran-vctrs. 211s Preparing to unpack .../174-r-cran-vctrs_0.6.5-1_arm64.deb ... 211s Unpacking r-cran-vctrs (0.6.5-1) ... 211s Selecting previously unselected package r-cran-blob. 211s Preparing to unpack .../175-r-cran-blob_1.2.4-1_all.deb ... 211s Unpacking r-cran-blob (1.2.4-1) ... 211s Selecting previously unselected package r-cran-fastmap. 211s Preparing to unpack .../176-r-cran-fastmap_1.1.1-1_arm64.deb ... 211s Unpacking r-cran-fastmap (1.1.1-1) ... 211s Selecting previously unselected package r-cran-cachem. 211s Preparing to unpack .../177-r-cran-cachem_1.0.8-1_arm64.deb ... 211s Unpacking r-cran-cachem (1.0.8-1) ... 211s Selecting previously unselected package r-cran-memoise. 211s Preparing to unpack .../178-r-cran-memoise_2.0.1-1_all.deb ... 211s Unpacking r-cran-memoise (2.0.1-1) ... 211s Selecting previously unselected package r-cran-pkgconfig. 211s Preparing to unpack .../179-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 211s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 211s Selecting previously unselected package r-cran-plogr. 211s Preparing to unpack .../180-r-cran-plogr_0.2.0-3build1_all.deb ... 211s Unpacking r-cran-plogr (0.2.0-3build1) ... 211s Selecting previously unselected package r-cran-cpp11. 211s Preparing to unpack .../181-r-cran-cpp11_0.4.7-1_all.deb ... 211s Unpacking r-cran-cpp11 (0.4.7-1) ... 211s Selecting previously unselected package r-cran-rsqlite. 211s Preparing to unpack .../182-r-cran-rsqlite_2.3.4-1_arm64.deb ... 211s Unpacking r-cran-rsqlite (2.3.4-1) ... 211s Selecting previously unselected package r-cran-curl. 211s Preparing to unpack .../183-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 211s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 211s Selecting previously unselected package r-cran-jsonlite. 211s Preparing to unpack .../184-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 211s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 211s Selecting previously unselected package r-cran-mime. 211s Preparing to unpack .../185-r-cran-mime_0.12-1_arm64.deb ... 211s Unpacking r-cran-mime (0.12-1) ... 211s Selecting previously unselected package r-cran-sys. 211s Preparing to unpack .../186-r-cran-sys_3.4.2-1_arm64.deb ... 211s Unpacking r-cran-sys (3.4.2-1) ... 211s Selecting previously unselected package r-cran-askpass. 211s Preparing to unpack .../187-r-cran-askpass_1.2.0-1_arm64.deb ... 211s Unpacking r-cran-askpass (1.2.0-1) ... 211s Selecting previously unselected package r-cran-openssl. 212s Preparing to unpack .../188-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 212s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 212s Selecting previously unselected package r-cran-r6. 212s Preparing to unpack .../189-r-cran-r6_2.5.1-1_all.deb ... 212s Unpacking r-cran-r6 (2.5.1-1) ... 212s Selecting previously unselected package r-cran-httr. 212s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 212s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 212s Selecting previously unselected package r-cran-png. 212s Preparing to unpack .../191-r-cran-png_0.1-8-1_arm64.deb ... 212s Unpacking r-cran-png (0.1-8-1) ... 212s Selecting previously unselected package r-bioc-zlibbioc. 212s Preparing to unpack .../192-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 212s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 212s Selecting previously unselected package r-bioc-xvector. 212s Preparing to unpack .../193-r-bioc-xvector_0.42.0-1_arm64.deb ... 212s Unpacking r-bioc-xvector (0.42.0-1) ... 212s Selecting previously unselected package r-cran-bitops. 212s Preparing to unpack .../194-r-cran-bitops_1.0-7-1_arm64.deb ... 212s Unpacking r-cran-bitops (1.0-7-1) ... 212s Selecting previously unselected package r-cran-rcurl. 212s Preparing to unpack .../195-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 212s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 212s Selecting previously unselected package r-bioc-genomeinfodbdata. 212s Preparing to unpack .../196-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 212s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 212s Selecting previously unselected package r-bioc-genomeinfodb. 212s Preparing to unpack .../197-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 212s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 212s Selecting previously unselected package r-cran-crayon. 212s Preparing to unpack .../198-r-cran-crayon_1.5.2-1_all.deb ... 212s Unpacking r-cran-crayon (1.5.2-1) ... 212s Selecting previously unselected package r-bioc-biostrings. 212s Preparing to unpack .../199-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 212s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 212s Selecting previously unselected package r-bioc-keggrest. 212s Preparing to unpack .../200-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 212s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 212s Selecting previously unselected package r-bioc-annotationdbi. 212s Preparing to unpack .../201-r-bioc-annotationdbi_1.64.1-1_all.deb ... 212s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 212s Selecting previously unselected package r-cran-base64enc. 212s Preparing to unpack .../202-r-cran-base64enc_0.1-3-3_arm64.deb ... 212s Unpacking r-cran-base64enc (0.1-3-3) ... 212s Selecting previously unselected package r-cran-digest. 212s Preparing to unpack .../203-r-cran-digest_0.6.34-1_arm64.deb ... 212s Unpacking r-cran-digest (0.6.34-1) ... 212s Selecting previously unselected package r-cran-ellipsis. 212s Preparing to unpack .../204-r-cran-ellipsis_0.3.2-2_arm64.deb ... 212s Unpacking r-cran-ellipsis (0.3.2-2) ... 212s Selecting previously unselected package r-cran-htmltools. 212s Preparing to unpack .../205-r-cran-htmltools_0.5.7-1_arm64.deb ... 212s Unpacking r-cran-htmltools (0.5.7-1) ... 212s Selecting previously unselected package r-cran-evaluate. 212s Preparing to unpack .../206-r-cran-evaluate_0.23-1_all.deb ... 212s Unpacking r-cran-evaluate (0.23-1) ... 212s Selecting previously unselected package r-cran-xfun. 212s Preparing to unpack .../207-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 212s Unpacking r-cran-xfun (0.41+dfsg-1) ... 212s Selecting previously unselected package r-cran-highr. 212s Preparing to unpack .../208-r-cran-highr_0.10+dfsg-1_all.deb ... 212s Unpacking r-cran-highr (0.10+dfsg-1) ... 212s Selecting previously unselected package r-cran-yaml. 212s Preparing to unpack .../209-r-cran-yaml_2.3.8-1_arm64.deb ... 212s Unpacking r-cran-yaml (2.3.8-1) ... 213s Selecting previously unselected package libjs-mathjax. 213s Preparing to unpack .../210-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 213s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 213s Selecting previously unselected package r-cran-knitr. 213s Preparing to unpack .../211-r-cran-knitr_1.45+dfsg-1_all.deb ... 213s Unpacking r-cran-knitr (1.45+dfsg-1) ... 213s Selecting previously unselected package r-cran-jquerylib. 213s Preparing to unpack .../212-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 213s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 213s Selecting previously unselected package r-cran-fs. 213s Preparing to unpack .../213-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 213s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 213s Selecting previously unselected package r-cran-rappdirs. 213s Preparing to unpack .../214-r-cran-rappdirs_0.3.3-1_arm64.deb ... 213s Unpacking r-cran-rappdirs (0.3.3-1) ... 213s Selecting previously unselected package r-cran-sass. 213s Preparing to unpack .../215-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 213s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 213s Selecting previously unselected package r-cran-bslib. 213s Preparing to unpack .../216-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 213s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 214s Selecting previously unselected package r-cran-fontawesome. 214s Preparing to unpack .../217-r-cran-fontawesome_0.5.2-1_all.deb ... 214s Unpacking r-cran-fontawesome (0.5.2-1) ... 214s Selecting previously unselected package r-cran-magrittr. 214s Preparing to unpack .../218-r-cran-magrittr_2.0.3-1_arm64.deb ... 214s Unpacking r-cran-magrittr (2.0.3-1) ... 214s Selecting previously unselected package r-cran-stringi. 214s Preparing to unpack .../219-r-cran-stringi_1.8.3-1_arm64.deb ... 214s Unpacking r-cran-stringi (1.8.3-1) ... 214s Selecting previously unselected package r-cran-stringr. 214s Preparing to unpack .../220-r-cran-stringr_1.5.1-1_all.deb ... 214s Unpacking r-cran-stringr (1.5.1-1) ... 214s Selecting previously unselected package r-cran-tinytex. 214s Preparing to unpack .../221-r-cran-tinytex_0.49-1_all.deb ... 214s Unpacking r-cran-tinytex (0.49-1) ... 214s Selecting previously unselected package libjs-modernizr. 214s Preparing to unpack .../222-libjs-modernizr_2.6.2+ds1-5_all.deb ... 214s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 214s Selecting previously unselected package r-cran-pkgkitten. 214s Preparing to unpack .../223-r-cran-pkgkitten_0.2.3-1_all.deb ... 214s Unpacking r-cran-pkgkitten (0.2.3-1) ... 214s Selecting previously unselected package r-cran-rcpp. 214s Preparing to unpack .../224-r-cran-rcpp_1.0.12-1_arm64.deb ... 214s Unpacking r-cran-rcpp (1.0.12-1) ... 214s Selecting previously unselected package r-cran-later. 214s Preparing to unpack .../225-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 214s Unpacking r-cran-later (1.3.2+dfsg-1) ... 214s Selecting previously unselected package r-cran-promises. 214s Preparing to unpack .../226-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 214s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 214s Selecting previously unselected package r-cran-httpuv. 214s Preparing to unpack .../227-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 214s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 214s Selecting previously unselected package r-cran-xtable. 214s Preparing to unpack .../228-r-cran-xtable_1%3a1.8-4-2_all.deb ... 214s Unpacking r-cran-xtable (1:1.8-4-2) ... 214s Selecting previously unselected package r-cran-sourcetools. 214s Preparing to unpack .../229-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 214s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 214s Selecting previously unselected package r-cran-withr. 214s Preparing to unpack .../230-r-cran-withr_2.5.0-1_all.deb ... 214s Unpacking r-cran-withr (2.5.0-1) ... 214s Selecting previously unselected package r-cran-commonmark. 214s Preparing to unpack .../231-r-cran-commonmark_1.9.1-1_arm64.deb ... 214s Unpacking r-cran-commonmark (1.9.1-1) ... 215s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 215s Preparing to unpack .../232-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 215s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 215s Selecting previously unselected package r-cran-shiny. 215s Preparing to unpack .../233-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 215s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 215s Selecting previously unselected package r-cran-rmarkdown. 215s Preparing to unpack .../234-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 215s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 215s Selecting previously unselected package r-cran-bookdown. 215s Preparing to unpack .../235-r-cran-bookdown_0.37+dfsg-1_all.deb ... 215s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 215s Selecting previously unselected package r-cran-biocmanager. 215s Preparing to unpack .../236-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 215s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 215s Selecting previously unselected package tex-common. 215s Preparing to unpack .../237-tex-common_6.18_all.deb ... 215s Unpacking tex-common (6.18) ... 215s Selecting previously unselected package t1utils. 215s Preparing to unpack .../238-t1utils_1.41-4build2_arm64.deb ... 215s Unpacking t1utils (1.41-4build2) ... 215s Selecting previously unselected package texlive-binaries. 215s Preparing to unpack .../239-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 215s Unpacking texlive-binaries (2023.20230311.66589-9) ... 215s Selecting previously unselected package texlive-base. 215s Preparing to unpack .../240-texlive-base_2023.20240207-1_all.deb ... 215s Unpacking texlive-base (2023.20240207-1) ... 216s Selecting previously unselected package texlive-latex-base. 216s Preparing to unpack .../241-texlive-latex-base_2023.20240207-1_all.deb ... 216s Unpacking texlive-latex-base (2023.20240207-1) ... 217s Selecting previously unselected package texlive-bibtex-extra. 217s Preparing to unpack .../242-texlive-bibtex-extra_2023.20240207-1_all.deb ... 217s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 220s Selecting previously unselected package r-bioc-biocstyle. 220s Preparing to unpack .../243-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 220s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 220s Selecting previously unselected package r-cran-lattice. 220s Preparing to unpack .../244-r-cran-lattice_0.22-5-1_arm64.deb ... 220s Unpacking r-cran-lattice (0.22-5-1) ... 220s Selecting previously unselected package r-cran-matrix. 220s Preparing to unpack .../245-r-cran-matrix_1.6-5-1_arm64.deb ... 220s Unpacking r-cran-matrix (1.6-5-1) ... 220s Selecting previously unselected package r-cran-matrixstats. 220s Preparing to unpack .../246-r-cran-matrixstats_1.2.0-1_arm64.deb ... 220s Unpacking r-cran-matrixstats (1.2.0-1) ... 220s Selecting previously unselected package r-bioc-matrixgenerics. 220s Preparing to unpack .../247-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 220s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 220s Selecting previously unselected package r-cran-abind. 220s Preparing to unpack .../248-r-cran-abind_1.4-5-2_all.deb ... 220s Unpacking r-cran-abind (1.4-5-2) ... 220s Selecting previously unselected package r-bioc-s4arrays. 220s Preparing to unpack .../249-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 220s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 220s Selecting previously unselected package r-bioc-sparsearray. 220s Preparing to unpack .../250-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 220s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 220s Selecting previously unselected package r-bioc-delayedarray. 221s Preparing to unpack .../251-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 221s Selecting previously unselected package r-cran-statmod. 221s Preparing to unpack .../252-r-cran-statmod_1.5.0-1_arm64.deb ... 221s Unpacking r-cran-statmod (1.5.0-1) ... 221s Selecting previously unselected package r-bioc-limma. 221s Preparing to unpack .../253-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 221s Selecting previously unselected package r-cran-locfit. 221s Preparing to unpack .../254-r-cran-locfit_1.5-9.8-1_arm64.deb ... 221s Unpacking r-cran-locfit (1.5-9.8-1) ... 221s Selecting previously unselected package r-bioc-edger. 221s Preparing to unpack .../255-r-bioc-edger_4.0.16+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 221s Selecting previously unselected package r-bioc-genomicranges. 221s Preparing to unpack .../256-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 221s Selecting previously unselected package r-bioc-org.hs.eg.db. 221s Preparing to unpack .../257-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 221s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 223s Selecting previously unselected package r-bioc-rhdf5lib. 223s Preparing to unpack .../258-r-bioc-rhdf5lib_1.24.2+dfsg-1_arm64.deb ... 223s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 223s Selecting previously unselected package r-bioc-rhdf5filters. 223s Preparing to unpack .../259-r-bioc-rhdf5filters_1.14.1+dfsg-3_arm64.deb ... 223s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 223s Selecting previously unselected package r-bioc-rhdf5. 223s Preparing to unpack .../260-r-bioc-rhdf5_2.46.1+dfsg-1_arm64.deb ... 223s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 223s Selecting previously unselected package r-bioc-summarizedexperiment. 223s Preparing to unpack .../261-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 223s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 223s Selecting previously unselected package r-cran-clipr. 223s Preparing to unpack .../262-r-cran-clipr_0.8.0-1_all.deb ... 223s Unpacking r-cran-clipr (0.8.0-1) ... 223s Selecting previously unselected package r-cran-codetools. 223s Preparing to unpack .../263-r-cran-codetools_0.2-19-1_all.deb ... 223s Unpacking r-cran-codetools (0.2-19-1) ... 223s Selecting previously unselected package r-cran-dotcall64. 223s Preparing to unpack .../264-r-cran-dotcall64_1.1-1-1_arm64.deb ... 223s Unpacking r-cran-dotcall64 (1.1-1-1) ... 223s Selecting previously unselected package r-cran-fansi. 223s Preparing to unpack .../265-r-cran-fansi_1.0.5-1_arm64.deb ... 223s Unpacking r-cran-fansi (1.0.5-1) ... 223s Selecting previously unselected package r-cran-globals. 223s Preparing to unpack .../266-r-cran-globals_0.16.2-1_all.deb ... 223s Unpacking r-cran-globals (0.16.2-1) ... 224s Selecting previously unselected package r-cran-listenv. 224s Preparing to unpack .../267-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 224s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 224s Selecting previously unselected package r-cran-parallelly. 224s Preparing to unpack .../268-r-cran-parallelly_1.37.1-1_arm64.deb ... 224s Unpacking r-cran-parallelly (1.37.1-1) ... 224s Selecting previously unselected package r-cran-future. 224s Preparing to unpack .../269-r-cran-future_1.33.1+dfsg-1_all.deb ... 224s Unpacking r-cran-future (1.33.1+dfsg-1) ... 224s Selecting previously unselected package r-cran-future.apply. 224s Preparing to unpack .../270-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 224s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 224s Selecting previously unselected package r-cran-generics. 224s Preparing to unpack .../271-r-cran-generics_0.1.3-1_all.deb ... 224s Unpacking r-cran-generics (0.1.3-1) ... 224s Selecting previously unselected package r-cran-hms. 224s Preparing to unpack .../272-r-cran-hms_1.1.3-1_all.deb ... 224s Unpacking r-cran-hms (1.1.3-1) ... 224s Selecting previously unselected package r-cran-utf8. 224s Preparing to unpack .../273-r-cran-utf8_1.2.4-1_arm64.deb ... 224s Unpacking r-cran-utf8 (1.2.4-1) ... 224s Selecting previously unselected package r-cran-pillar. 224s Preparing to unpack .../274-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 224s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 224s Selecting previously unselected package r-cran-prettyunits. 224s Preparing to unpack .../275-r-cran-prettyunits_1.2.0-1_all.deb ... 224s Unpacking r-cran-prettyunits (1.2.0-1) ... 224s Selecting previously unselected package r-cran-progress. 224s Preparing to unpack .../276-r-cran-progress_1.2.3-1_all.deb ... 224s Unpacking r-cran-progress (1.2.3-1) ... 224s Selecting previously unselected package r-cran-progressr. 224s Preparing to unpack .../277-r-cran-progressr_0.14.0-1_all.deb ... 224s Unpacking r-cran-progressr (0.14.0-1) ... 224s Selecting previously unselected package r-cran-rcppeigen. 224s Preparing to unpack .../278-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 224s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 224s Selecting previously unselected package r-cran-tibble. 224s Preparing to unpack .../279-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 224s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 225s Selecting previously unselected package r-cran-tidyselect. 225s Preparing to unpack .../280-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 225s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 225s Selecting previously unselected package r-cran-tzdb. 225s Preparing to unpack .../281-r-cran-tzdb_0.4.0-2_arm64.deb ... 225s Unpacking r-cran-tzdb (0.4.0-2) ... 225s Selecting previously unselected package r-cran-vroom. 225s Preparing to unpack .../282-r-cran-vroom_1.6.5-1_arm64.deb ... 225s Unpacking r-cran-vroom (1.6.5-1) ... 225s Selecting previously unselected package r-cran-readr. 225s Preparing to unpack .../283-r-cran-readr_2.1.5-1_arm64.deb ... 225s Unpacking r-cran-readr (2.1.5-1) ... 225s Selecting previously unselected package r-cran-sp. 225s Preparing to unpack .../284-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 225s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 225s Selecting previously unselected package r-cran-spam. 225s Preparing to unpack .../285-r-cran-spam_2.10-0-1_arm64.deb ... 225s Unpacking r-cran-spam (2.10-0-1) ... 225s Selecting previously unselected package r-cran-seuratobject. 225s Preparing to unpack .../286-r-cran-seuratobject_5.0.1-1_arm64.deb ... 225s Unpacking r-cran-seuratobject (5.0.1-1) ... 225s Selecting previously unselected package autopkgtest-satdep. 225s Preparing to unpack .../287-1-autopkgtest-satdep.deb ... 225s Unpacking autopkgtest-satdep (0) ... 225s Setting up libjs-json (0~20221030+~1.0.8-1) ... 225s Setting up javascript-common (11+nmu1) ... 225s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 225s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 225s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 225s Setting up libpaper1:arm64 (1.1.29) ... 226s 226s Creating config file /etc/papersize with new version 226s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 226s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 226s Setting up libxpm4:arm64 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227s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 227s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 227s Setting up libisl23:arm64 (0.26-3) ... 227s Setting up libc-dev-bin (2.39-0ubuntu2) ... 227s Setting up node-normalize.css (8.0.1-5) ... 227s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 227s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 227s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 227s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 227s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 227s Setting up libblas-dev:arm64 (3.12.0-3) ... 227s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 227s Setting up libsz2:arm64 (1.1.2-1) ... 227s Setting up dctrl-tools (2.24-3build2) ... 227s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 227s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 227s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 227s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 227s Setting up libpotrace0:arm64 (1.16-2) ... 227s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 227s Setting up libice6:arm64 (2:1.0.10-1build2) ... 227s Setting up liblapack3:arm64 (3.12.0-3) ... 227s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 227s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 227s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 227s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 227s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 227s Setting up libaec-dev:arm64 (1.1.2-1) ... 227s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 227s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 227s Setting up pkgconf:arm64 (1.8.1-2) ... 227s Setting up libthai0:arm64 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gcc (4:13.2.0-7ubuntu1) ... 229s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 229s Setting up r-base-core (4.3.3-2build1) ... 230s 230s Creating config file /etc/R/Renviron with new version 230s Setting up r-cran-crayon (1.5.2-1) ... 230s Setting up libhdf5-dev (1.10.10+repack-3ubuntu1) ... 230s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 230s Setting up r-cran-sourcetools (0.1.7-1-1) ... 230s Setting up r-cran-lattice (0.22-5-1) ... 230s Setting up r-cran-locfit (1.5-9.8-1) ... 230s Setting up texlive-binaries (2023.20230311.66589-9) ... 230s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 230s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 230s Setting up r-cran-statmod (1.5.0-1) ... 230s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 230s Setting up 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Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 232s Setting up r-cran-glue (1.7.0-1) ... 232s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 232s Setting up r-cran-bit (4.0.5-1) ... 232s Setting up r-cran-xtable (1:1.8-4-2) ... 232s Setting up r-cran-cli (3.6.2-1) ... 232s Setting up gfortran (4:13.2.0-7ubuntu1) ... 232s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 232s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 232s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 232s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 232s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 232s Setting up r-cran-dotcall64 (1.1-1-1) ... 232s Setting up r-cran-bitops (1.0-7-1) ... 232s Setting up r-cran-bit64 (4.0.5-1) ... 232s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 232s Setting up r-cran-progressr (0.14.0-1) ... 232s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 232s Setting up r-cran-askpass (1.2.0-1) ... 232s Setting up r-cran-fastmap (1.1.1-1) ... 232s Setting up r-cran-png (0.1-8-1) ... 232s Setting up r-bioc-biobase (2.62.0-1) ... 232s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 232s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 232s Setting up r-cran-sp (1:2.1-2+dfsg-1) ... 232s Setting up r-cran-utf8 (1.2.4-1) ... 232s Setting up r-cran-parallelly (1.37.1-1) ... 232s Setting up r-cran-stringi (1.8.3-1) ... 232s Setting up texlive-latex-base (2023.20240207-1) ... 232s Setting up r-cran-cpp11 (0.4.7-1) ... 232s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 232s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 232s Setting up r-cran-later (1.3.2+dfsg-1) ... 232s Setting up r-cran-matrix (1.6-5-1) ... 232s Setting up r-cran-tinytex (0.49-1) ... 232s Setting up r-cran-knitr (1.45+dfsg-1) ... 232s Setting up g++ (4:13.2.0-7ubuntu1) ... 232s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 232s Setting up r-cran-cachem (1.0.8-1) ... 232s Setting up build-essential (12.10ubuntu1) ... 232s Setting up r-bioc-iranges (2.36.0-1) ... 232s Setting up r-cran-tzdb (0.4.0-2) ... 232s Setting up r-cran-globals (0.16.2-1) ... 232s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 232s Setting up r-cran-spam (2.10-0-1) ... 232s Setting up r-cran-vctrs (0.6.5-1) ... 232s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 232s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 232s Setting up r-cran-ellipsis (0.3.2-2) ... 232s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 232s Setting up r-base-dev (4.3.3-2build1) ... 232s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 232s Setting up r-cran-stringr (1.5.1-1) ... 232s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 232s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 232s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 232s Setting up r-cran-future (1.33.1+dfsg-1) ... 232s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 232s Setting up texlive-bibtex-extra (2023.20240207-1) ... 232s Setting up r-cran-future.apply (1.11.1+dfsg-1) ... 232s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 232s Setting up r-cran-httr (1.4.7+dfsg-1) ... 232s Setting up r-cran-hms (1.1.3-1) ... 232s Setting up r-cran-memoise (2.0.1-1) ... 232s Setting up r-cran-promises (1.2.1+dfsg-1) ... 232s Setting up r-cran-blob (1.2.4-1) ... 232s Setting up r-cran-htmltools (0.5.7-1) ... 232s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 232s Setting up r-cran-seuratobject (5.0.1-1) ... 232s Setting up r-bioc-xvector (0.42.0-1) ... 232s Setting up r-cran-sass (0.4.8+dfsg-1) ... 232s Setting up r-cran-rsqlite (2.3.4-1) ... 232s Setting up r-cran-progress (1.2.3-1) ... 232s Setting up r-cran-vroom (1.6.5-1) ... 232s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 232s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 232s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 232s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 232s Setting up r-cran-fontawesome (0.5.2-1) ... 232s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 232s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 232s Setting up r-cran-readr (2.1.5-1) ... 232s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 232s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 232s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 232s Setting up r-bioc-annotationdbi (1.64.1-1) ... 232s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 232s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 232s Setting up r-cran-bookdown (0.37+dfsg-1) ... 232s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 232s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 232s Setting up autopkgtest-satdep (0) ... 232s Processing triggers for man-db (2.12.0-3) ... 233s Processing triggers for install-info (7.1-3) ... 234s Processing triggers for libc-bin (2.39-0ubuntu2) ... 235s Processing triggers for tex-common (6.18) ... 236s Running updmap-sys. This may take some time... done. 236s Running mktexlsr /var/lib/texmf ... done. 237s Building format(s) --all. 275s This may take some time... done. 293s (Reading database ... 107186 files and directories currently installed.) 293s Removing autopkgtest-satdep (0) ... 294s autopkgtest [17:34:10]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 294s autopkgtest [17:34:10]: test pkg-r-autopkgtest: [----------------------- 294s Test: Try to load the R library edgeR 295s 295s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 295s Copyright (C) 2024 The R Foundation for Statistical Computing 295s Platform: aarch64-unknown-linux-gnu (64-bit) 295s 295s R is free software and comes with ABSOLUTELY NO WARRANTY. 295s You are welcome to redistribute it under certain conditions. 295s Type 'license()' or 'licence()' for distribution details. 295s 295s R is a collaborative project with many contributors. 295s Type 'contributors()' for more information and 295s 'citation()' on how to cite R or R packages in publications. 295s 295s Type 'demo()' for some demos, 'help()' for on-line help, or 295s 'help.start()' for an HTML browser interface to help. 295s Type 'q()' to quit R. 295s 295s > library('edgeR') 295s Loading required package: limma 296s > 296s > 296s Other tests are currently unsupported! 296s They will be progressively added. 296s autopkgtest [17:34:12]: test pkg-r-autopkgtest: -----------------------] 297s autopkgtest [17:34:13]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 297s pkg-r-autopkgtest PASS 297s autopkgtest [17:34:13]: @@@@@@@@@@@@@@@@@@@@ summary 297s pkg-r-autopkgtest PASS 308s Creating nova instance adt-noble-arm64-r-bioc-edger-20240316-172916-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...