0s autopkgtest [17:29:14]: starting date and time: 2024-03-16 17:29:14+0000 0s autopkgtest [17:29:14]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:29:14]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jei5ioja/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-edaseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-13.secgroup --name adt-noble-arm64-r-bioc-edaseq-20240316-172914-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 101s autopkgtest [17:30:55]: testbed dpkg architecture: arm64 101s autopkgtest [17:30:55]: testbed apt version: 2.7.12 101s autopkgtest [17:30:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 101s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 102s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 102s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 102s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 102s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 102s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 102s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 102s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 102s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 103s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 103s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 103s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 112s Fetched 9060 kB in 2s (4221 kB/s) 115s Reading package lists... 120s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s Calculating upgrade... 123s The following packages will be REMOVED: 123s libglib2.0-0 libssl3 123s The following NEW packages will be installed: 123s libglib2.0-0t64 libssl3t64 xdg-user-dirs 123s The following packages have been kept back: 123s curl 123s The following packages will be upgraded: 123s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 123s ubuntu-minimal ubuntu-standard 123s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 123s Need to get 4613 kB of archives. 123s After this operation, 211 kB of additional disk space will be used. 123s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 123s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 123s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 123s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 123s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 123s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 123s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 123s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 123s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 123s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 124s Fetched 4613 kB in 1s (5868 kB/s) 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 124s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 124s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 125s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 125s udisks2 depends on libglib2.0-0 (>= 2.77.0). 125s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 125s python3-gi depends on libglib2.0-0 (>= 2.77.0). 125s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 125s netplan.io depends on libglib2.0-0 (>= 2.70.0). 125s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 125s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 125s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 125s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 125s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 125s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 125s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 125s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 125s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 125s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 125s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 125s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 125s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 125s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 125s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 125s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 125s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 125s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 125s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 125s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 125s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 125s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 125s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 125s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 125s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 125s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 125s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 125s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 125s fwupd depends on libglib2.0-0 (>= 2.79.0). 125s bolt depends on libglib2.0-0 (>= 2.56.0). 125s 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 125s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 125s Selecting previously unselected package libglib2.0-0t64:arm64. 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 126s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 126s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 126s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 126s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 127s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 127s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 127s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 127s wget depends on libssl3 (>= 3.0.0). 127s u-boot-tools depends on libssl3 (>= 3.0.0). 127s tnftp depends on libssl3 (>= 3.0.0). 127s tcpdump depends on libssl3 (>= 3.0.0). 127s systemd-resolved depends on libssl3 (>= 3.0.0). 127s systemd depends on libssl3 (>= 3.0.0). 127s sudo depends on libssl3 (>= 3.0.0). 127s sbsigntool depends on libssl3 (>= 3.0.0). 127s rsync depends on libssl3 (>= 3.0.0). 127s python3-cryptography depends on libssl3 (>= 3.0.0). 127s openssh-server depends on libssl3 (>= 3.0.10). 127s openssh-client depends on libssl3 (>= 3.0.10). 127s mtd-utils depends on libssl3 (>= 3.0.0). 127s mokutil depends on libssl3 (>= 3.0.0). 127s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 127s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 127s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 127s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 127s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 127s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 127s libnvme1 depends on libssl3 (>= 3.0.0). 127s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 127s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 127s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 127s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 127s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 127s kmod depends on libssl3 (>= 3.0.0). 127s dhcpcd-base depends on libssl3 (>= 3.0.0). 127s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 127s 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 127s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 127s Selecting previously unselected package libssl3t64:arm64. 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 127s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 127s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 128s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 128s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 128s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 128s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 128s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 128s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 128s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 128s Unpacking ubuntu-minimal (1.536) over (1.535) ... 128s Selecting previously unselected package xdg-user-dirs. 129s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 129s Unpacking xdg-user-dirs (0.18-1) ... 129s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 129s Unpacking ubuntu-standard (1.536) over (1.535) ... 129s Setting up ubuntu-minimal (1.536) ... 129s Setting up xdg-user-dirs (0.18-1) ... 129s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 129s Setting up libtirpc-common (1.3.4+ds-1.1) ... 129s Setting up ubuntu-standard (1.536) ... 129s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 130s No schema files found: doing nothing. 130s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 130s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 130s Setting up openssl (3.0.13-0ubuntu1) ... 130s Setting up readline-common (8.2-3.1) ... 130s Processing triggers for man-db (2.12.0-3) ... 130s Processing triggers for install-info (7.1-3) ... 131s Processing triggers for libc-bin (2.39-0ubuntu2) ... 131s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 133s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 133s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 133s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 133s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 135s Reading package lists... 135s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Calculating upgrade... 137s The following packages have been kept back: 137s curl 137s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 137s Reading package lists... 138s Building dependency tree... 138s Reading state information... 139s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 142s autopkgtest [17:31:36]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 143s autopkgtest [17:31:37]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-edaseq 145s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (dsc) [2311 B] 145s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (tar) [119 kB] 145s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (diff) [5568 B] 145s gpgv: Signature made Fri Dec 1 09:50:17 2023 UTC 145s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 145s gpgv: issuer "tillea@rki.de" 145s gpgv: Can't check signature: No public key 145s dpkg-source: warning: cannot verify inline signature for ./r-bioc-edaseq_2.36.0+dfsg-1.dsc: no acceptable signature found 145s autopkgtest [17:31:39]: testing package r-bioc-edaseq version 2.36.0+dfsg-1 145s autopkgtest [17:31:39]: build not needed 146s autopkgtest [17:31:40]: test pkg-r-autopkgtest: preparing testbed 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 149s Starting pkgProblemResolver with broken count: 0 149s Starting 2 pkgProblemResolver with broken count: 0 149s Done 150s The following additional packages will be installed: 150s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 150s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 150s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 150s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 150s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 150s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 150s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 150s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 150s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 150s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 150s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 150s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 150s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 150s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 150s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 150s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 150s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 150s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 150s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 150s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 150s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 150s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 150s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 150s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 150s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 150s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 150s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 150s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 150s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 150s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-aroma.light 150s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 150s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings 150s r-bioc-delayedarray r-bioc-deseq2 r-bioc-edaseq r-bioc-edger 150s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 150s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 150s r-bioc-limma r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 150s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread 150s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 150s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 150s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 150s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 150s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 150s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc 150s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 150s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 150s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 150s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 150s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-hwriter 150s r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 150s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 150s r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler 150s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 150s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 150s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 150s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 150s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 150s r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 150s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 150s r-cran-rcppeigen r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 150s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass 150s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod 150s r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble 150s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 150s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 150s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 150s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 150s x11-common xdg-utils zip zlib1g-dev 150s Suggested packages: 150s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 150s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 150s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 150s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 150s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 150s libboost-context1.83-dev libboost-contract1.83-dev 150s libboost-coroutine1.83-dev libboost-date-time1.83-dev 150s libboost-exception1.83-dev libboost-fiber1.83-dev 150s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 150s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 150s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 150s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 150s libboost-numpy1.83-dev libboost-program-options1.83-dev 150s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 150s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 150s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 150s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 150s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 150s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 150s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 150s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 150s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 150s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 150s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 150s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 150s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-cran-princurve 150s r-bioc-all r-bioc-affy r-bioc-annotate r-cran-foreach r-cran-bbmisc 150s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 150s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 150s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 150s r-cran-pheatmap r-bioc-tximport r-bioc-tximeta r-bioc-tximportdata 150s r-cran-readr r-cran-pbapply r-bioc-glmgampoi r-bioc-rhdf5 150s r-cran-seuratobject r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown 150s r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-cran-biasedurn 150s r-cran-ellipse r-cran-gplots r-bioc-sparsematrixstats r-cran-roxygen2 150s r-cran-ff r-cran-covr r-cran-spelling r-cran-kernlab r-cran-mvtnorm 150s r-cran-vcd r-cran-shinyjs r-cran-viridis r-cran-rstudioapi r-cran-rmysql 150s r-cran-polyclip r-cran-lubridate r-cran-sp r-cran-gridextra 150s r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-getopt r-cran-gam 150s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival 150s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 150s r-cran-bench r-cran-here r-cran-plm r-cran-zoo debhelper ghostscript gv 150s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 150s hintview texlive-latex-base-doc wp2latex 150s Recommended packages: 150s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 150s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 150s r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect 150s r-cran-testit r-cran-tufte r-cran-webshot r-cran-covr r-cran-thematic 150s r-cran-cliapp r-cran-mockery r-cran-whoami r-cran-bench r-cran-decor 150s r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-rpostgresql r-cran-gh 150s r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-survival 150s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 150s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 150s r-cran-svglite r-cran-vdiffr r-cran-cairo r-cran-markdown r-cran-readr 150s r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 150s r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 150s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr 150s r-cran-webfakes r-cran-future r-cran-pingr r-cran-runit r-cran-usethis 150s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-rvest r-cran-dichromat 150s r-cran-data.table r-cran-formattable r-cran-pkgdown r-cran-zeallot 150s r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl 150s libx11-protocol-perl x11-utils x11-xserver-utils 150s The following packages will be REMOVED: 150s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 150s The following NEW packages will be installed: 150s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 150s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 150s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 150s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 150s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 150s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 150s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 150s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 150s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 150s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 150s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 150s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 150s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 150s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 150s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 150s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 150s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 150s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 150s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 150s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 150s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 150s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 150s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 150s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 150s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 150s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 150s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 150s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 150s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 150s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 150s r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase r-bioc-biocfilecache 150s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 150s r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 150s r-bioc-edaseq r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 150s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 150s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 150s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 150s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 150s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 150s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 150s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 150s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 150s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 150s r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-diffobj 150s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 150s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 150s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 150s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 150s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-hwriter 150s r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 150s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 150s r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler 150s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 150s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 150s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 150s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 150s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 150s r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 150s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 150s r-cran-rcppeigen r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 150s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass 150s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod 150s r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble 150s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 150s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 150s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 150s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 150s x11-common xdg-utils zip zlib1g-dev 150s The following packages will be upgraded: 150s curl 150s 1 upgraded, 325 newly installed, 5 to remove and 0 not upgraded. 150s Need to get 457 MB/457 MB of archives. 150s After this operation, 1405 MB of additional disk space will be used. 150s Get:1 /tmp/autopkgtest.4up3fl/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [776 B] 150s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 151s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 151s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 151s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 151s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 151s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 151s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 151s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 151s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 151s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 151s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 151s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 151s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 151s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 151s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 151s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 151s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 151s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 151s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 151s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 151s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 151s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 151s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 151s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 151s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 151s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 151s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 151s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 151s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 152s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 152s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 152s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 152s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 152s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 152s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 153s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 153s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 153s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 153s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 153s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 153s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 153s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 153s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 153s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 153s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 153s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 153s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 153s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 153s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 153s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 153s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 153s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 154s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 154s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 154s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 154s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 154s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 154s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 154s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 154s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 154s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 154s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 154s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 154s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 154s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 154s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 154s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 154s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 154s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 154s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 154s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 154s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 154s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 154s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 154s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 154s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 154s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 155s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 155s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 155s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 155s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 155s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 155s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 155s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 155s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 155s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 155s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 155s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 155s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 155s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 155s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 155s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 155s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 155s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 155s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 155s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 155s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 155s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 155s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 155s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 155s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 155s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 156s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 156s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 156s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 156s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 156s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 156s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 156s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 156s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 156s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 156s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 156s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 156s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 156s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 156s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 156s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 156s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 156s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 156s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 156s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 156s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 156s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 156s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 156s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 156s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 156s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 156s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 156s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 156s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 156s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 156s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 156s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 156s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 156s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 156s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 156s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 156s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 156s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 156s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 156s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 156s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 157s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 157s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 157s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 157s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 157s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 157s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 157s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 158s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 158s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 158s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 158s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 158s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 158s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 158s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 158s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 158s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 158s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 158s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 158s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 158s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 158s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 158s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 158s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 158s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 158s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 158s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 158s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 158s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 158s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 158s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 158s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 158s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 158s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 158s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 158s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 158s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 158s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 158s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 158s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 158s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 158s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 158s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 158s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 158s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 159s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 159s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 159s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 159s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 159s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 159s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 159s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 159s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 160s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 160s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 160s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 160s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 160s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-aroma.light all 3.32.0-1 [576 kB] 160s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 160s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 160s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 160s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 160s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 160s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 160s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 160s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 160s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 160s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 160s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 160s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 160s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 160s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 160s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 160s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 161s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 161s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 161s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 161s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 161s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 161s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 161s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 162s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 162s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 162s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 162s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 162s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 162s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 162s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 162s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 162s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 162s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 162s Get:234 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 162s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 162s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 162s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 162s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 162s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 162s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 162s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 162s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 162s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 162s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 162s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 162s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 162s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 162s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 162s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 162s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 162s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 162s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 162s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 162s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 162s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 162s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 162s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 162s Get:258 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 162s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 162s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 162s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 162s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 164s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 164s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 164s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 164s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 164s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 164s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 164s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 164s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 164s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 164s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 164s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 164s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 164s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 164s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 164s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 164s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 165s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 165s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 165s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 165s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 165s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 165s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 165s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 165s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 165s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 165s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 165s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 165s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 165s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 165s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 165s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 165s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq2 arm64 1.42.0+dfsg-1 [1218 kB] 165s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 165s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 165s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 165s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 165s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 165s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 165s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 165s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 165s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 165s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB] 166s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 166s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 166s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 166s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 166s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edaseq all 2.36.0+dfsg-1 [384 kB] 166s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 166s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 166s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 166s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 166s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 166s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 166s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 166s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 166s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 166s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 166s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 166s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 167s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 167s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 167s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 167s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 167s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 168s Preconfiguring packages ... 168s Fetched 457 MB in 16s (27.9 MB/s) 168s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 168s wget depends on libpsl5 (>= 0.16.0). 168s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 168s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 168s 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 169s Removing libpsl5:arm64 (0.21.2-1build1) ... 169s Selecting previously unselected package libpsl5t64:arm64. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 169s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 169s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 169s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 169s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 169s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 169s Selecting previously unselected package libcurl4t64:arm64. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 169s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 169s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 169s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 169s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 169s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 169s 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 169s Removing libpng16-16:arm64 (1.6.43-1) ... 170s Selecting previously unselected package libpng16-16t64:arm64. 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 170s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 170s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 170s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 170s parted depends on libreadline8 (>= 6.0). 170s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 170s gpgsm depends on libreadline8 (>= 6.0). 170s gpgconf depends on libreadline8 (>= 6.0). 170s gpg depends on libreadline8 (>= 6.0). 170s gawk depends on libreadline8 (>= 6.0). 170s fdisk depends on libreadline8 (>= 6.0). 170s 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 170s Removing libreadline8:arm64 (8.2-3) ... 170s Selecting previously unselected package libreadline8t64:arm64. 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 170s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 170s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 170s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 170s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 170s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 170s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 171s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 171s lsof depends on libtirpc3 (>= 1.0.2). 171s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 171s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 171s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 171s iproute2 depends on libtirpc3 (>= 1.0.2). 171s 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 171s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 171s Selecting previously unselected package libtirpc3t64:arm64. 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 171s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 171s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 171s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 171s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 171s Selecting previously unselected package libc-dev-bin. 171s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 171s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 171s Selecting previously unselected package linux-libc-dev:arm64. 171s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 171s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 171s Selecting previously unselected package libcrypt-dev:arm64. 171s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 171s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 171s Selecting previously unselected package libtirpc-dev:arm64. 171s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 171s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 171s Selecting previously unselected package libnsl-dev:arm64. 171s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 171s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 171s Selecting previously unselected package rpcsvc-proto. 171s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 171s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 171s Selecting previously unselected package libc6-dev:arm64. 171s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 171s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 171s Selecting previously unselected package libisl23:arm64. 171s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 171s Unpacking libisl23:arm64 (0.26-3) ... 171s Selecting previously unselected package libmpc3:arm64. 171s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 171s Unpacking libmpc3:arm64 (1.3.1-1) ... 171s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 171s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 171s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 172s Selecting previously unselected package cpp-13. 172s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 172s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 172s Selecting previously unselected package cpp-aarch64-linux-gnu. 172s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 172s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 172s Selecting previously unselected package cpp. 172s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 172s Unpacking cpp (4:13.2.0-7ubuntu1) ... 172s Selecting previously unselected package libcc1-0:arm64. 172s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 172s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libgomp1:arm64. 172s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 172s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libitm1:arm64. 172s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 172s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libatomic1:arm64. 172s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 172s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libasan8:arm64. 172s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 172s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package liblsan0:arm64. 172s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 172s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libtsan2:arm64. 172s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 172s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 173s Selecting previously unselected package libubsan1:arm64. 173s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 173s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 173s Selecting previously unselected package libhwasan0:arm64. 173s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 173s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 173s Selecting previously unselected package libgcc-13-dev:arm64. 173s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 173s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 173s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 173s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package gcc-13. 173s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 173s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package gcc-aarch64-linux-gnu. 173s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 173s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 173s Selecting previously unselected package gcc. 173s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 173s Unpacking gcc (4:13.2.0-7ubuntu1) ... 173s Selecting previously unselected package libstdc++-13-dev:arm64. 173s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 173s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package g++-13-aarch64-linux-gnu. 173s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 173s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 174s Selecting previously unselected package g++-13. 174s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 174s Unpacking g++-13 (13.2.0-17ubuntu2) ... 174s Selecting previously unselected package g++-aarch64-linux-gnu. 174s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 174s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 174s Selecting previously unselected package g++. 174s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 174s Unpacking g++ (4:13.2.0-7ubuntu1) ... 174s Selecting previously unselected package build-essential. 174s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 174s Unpacking build-essential (12.10ubuntu1) ... 174s Selecting previously unselected package dctrl-tools. 174s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 174s Unpacking dctrl-tools (2.24-3build2) ... 174s Selecting previously unselected package fonts-dejavu-mono. 174s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 174s Unpacking fonts-dejavu-mono (2.37-8) ... 174s Selecting previously unselected package fonts-dejavu-core. 174s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 174s Unpacking fonts-dejavu-core (2.37-8) ... 174s Selecting previously unselected package fontconfig-config. 174s Preparing to unpack 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fonts-lmodern. 175s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 175s Unpacking fonts-lmodern (2.005-1) ... 175s Selecting previously unselected package fonts-mathjax. 175s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 175s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 175s Selecting previously unselected package libgfortran5:arm64. 175s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 175s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 175s Selecting previously unselected package libgfortran-13-dev:arm64. 175s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 175s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 175s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 175s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 175s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 175s Selecting previously unselected package gfortran-13. 175s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 175s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 175s Selecting previously unselected package gfortran-aarch64-linux-gnu. 175s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 175s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Selecting previously unselected package gfortran. 175s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 175s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 175s Selecting previously unselected package icu-devtools. 175s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 175s Unpacking icu-devtools (74.2-1ubuntu1) ... 175s Selecting previously unselected package javascript-common. 175s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 175s Unpacking javascript-common (11+nmu1) ... 175s Selecting previously unselected package libio-string-perl. 175s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 175s Unpacking libio-string-perl (1.08-4) ... 175s Selecting previously unselected package liblatex-tounicode-perl. 175s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 175s Unpacking liblatex-tounicode-perl (0.54-2) ... 175s Selecting previously unselected package libbibtex-parser-perl. 175s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 175s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 175s Selecting previously unselected package libblas3:arm64. 175s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 175s Unpacking libblas3:arm64 (3.12.0-3) ... 175s Selecting previously unselected package libblas-dev:arm64. 175s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 175s Unpacking libblas-dev:arm64 (3.12.0-3) ... 176s Selecting previously unselected package libboost1.83-dev:arm64. 176s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 176s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 177s Selecting previously unselected package libboost-dev:arm64. 178s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 178s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 178s Selecting previously unselected package libbz2-dev:arm64. 178s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 178s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 178s Selecting previously unselected package libpixman-1-0:arm64. 178s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 178s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 178s Selecting previously unselected package libxcb-render0:arm64. 178s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 178s Unpacking libxcb-render0:arm64 (1.15-1) ... 178s Selecting previously unselected package libxcb-shm0:arm64. 178s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb 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libharfbuzz0b:arm64. 178s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 178s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 178s Selecting previously unselected package x11-common. 178s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 178s Unpacking x11-common (1:7.7+23ubuntu2) ... 178s Selecting previously unselected package libice6:arm64. 178s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 178s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 178s Selecting previously unselected package libicu-dev:arm64. 178s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 178s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 179s Selecting previously unselected package libjpeg-turbo8:arm64. 179s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 179s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 179s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 179s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 179s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 179s Selecting previously unselected package libjpeg8:arm64. 179s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 179s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 179s Selecting previously unselected package libjpeg8-dev:arm64. 179s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 179s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 179s Selecting previously unselected package libjpeg-dev:arm64. 179s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 179s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 179s Selecting previously unselected package libjs-bootstrap. 179s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 179s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 179s Selecting previously unselected package libjs-popper.js. 179s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 179s Unpacking libjs-popper.js (1.16.1+ds-6) ... 179s Selecting previously unselected package libjs-bootstrap4. 179s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 179s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 179s Selecting previously unselected package libjs-d3. 179s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 179s Unpacking libjs-d3 (3.5.17-4) ... 179s Selecting previously unselected package libjs-es5-shim. 179s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 179s Unpacking libjs-es5-shim (4.6.7-2) ... 179s Selecting previously unselected package libjs-highlight.js. 179s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 179s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 179s Selecting previously unselected package libjs-jquery. 179s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 179s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 179s Selecting previously unselected package libjs-jquery-datatables. 179s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 179s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 179s Selecting previously unselected package libjs-sifter.js. 179s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 179s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 179s Selecting previously unselected package libjs-microplugin.js. 180s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 180s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 180s Selecting previously unselected package libjs-jquery-selectize.js. 180s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 180s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 180s Selecting previously unselected package libjs-jquery-ui. 180s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 180s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 180s Selecting previously unselected package libjs-json. 180s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 180s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 180s Selecting previously unselected package libjs-lunr. 180s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 180s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 180s Selecting previously unselected package libjs-prettify. 180s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 180s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 180s Selecting previously unselected package libkpathsea6:arm64. 180s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 180s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 180s Selecting previously unselected package liblapack3:arm64. 180s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 180s Unpacking liblapack3:arm64 (3.12.0-3) ... 180s Selecting previously unselected package liblapack-dev:arm64. 180s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 180s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 180s Selecting previously unselected package liblerc4:arm64. 180s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 180s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 180s Selecting previously unselected package liblua5.4-0:arm64. 180s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 180s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 180s Selecting previously unselected package libncurses-dev:arm64. 180s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 180s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 181s Selecting previously unselected package libthai-data. 181s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 181s Unpacking libthai-data (0.1.29-2) ... 181s Selecting previously unselected package libthai0:arm64. 181s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 181s Unpacking libthai0:arm64 (0.1.29-2) ... 181s Selecting previously unselected package libpango-1.0-0:arm64. 181s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 181s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 181s Selecting previously unselected package libpangoft2-1.0-0:arm64. 181s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 181s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 181s Selecting previously unselected package libpangocairo-1.0-0:arm64. 181s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 181s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 181s Selecting previously unselected package libpaper1:arm64. 181s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 181s Unpacking libpaper1:arm64 (1.1.29) ... 181s Selecting previously unselected package libpaper-utils. 181s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 181s Unpacking libpaper-utils (1.1.29) ... 181s Selecting previously unselected package libpcre2-16-0:arm64. 181s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 181s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 181s Selecting previously unselected package libpcre2-32-0:arm64. 181s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 181s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 181s Selecting previously unselected package libpcre2-posix3:arm64. 181s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 181s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 181s Selecting previously unselected package libpcre2-dev:arm64. 181s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 181s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 181s Selecting previously unselected package libpkgconf3:arm64. 181s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 181s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 181s Selecting previously unselected package zlib1g-dev:arm64. 181s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 181s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 181s Selecting previously unselected package libpng-dev:arm64. 181s Preparing to unpack .../111-libpng-dev_1.6.43-3_arm64.deb ... 181s Unpacking libpng-dev:arm64 (1.6.43-3) ... 181s Selecting previously unselected package libpotrace0:arm64. 181s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 181s Unpacking libpotrace0:arm64 (1.16-2) ... 181s Selecting previously unselected package libptexenc1:arm64. 181s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 181s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 181s Selecting previously unselected package libreadline-dev:arm64. 181s Preparing to unpack .../114-libreadline-dev_8.2-3.1_arm64.deb ... 181s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 181s Selecting previously unselected package libsharpyuv0:arm64. 181s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 181s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 181s Selecting previously unselected package libsm6:arm64. 182s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 182s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 182s Selecting previously unselected package libsynctex2:arm64. 182s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 182s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 182s Selecting previously unselected package libtcl8.6:arm64. 182s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 182s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 182s Selecting previously unselected package libteckit0:arm64. 182s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 182s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 182s Selecting previously unselected package libtexlua53-5:arm64. 182s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 182s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 182s Selecting previously unselected package libjbig0:arm64. 182s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 182s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 182s Selecting previously unselected package libwebp7:arm64. 182s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 182s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 182s Selecting previously unselected package libtiff6:arm64. 182s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 182s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 182s Selecting previously unselected package libxft2:arm64. 182s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 182s Unpacking libxft2:arm64 (2.3.6-1) ... 182s Selecting previously unselected package libxss1:arm64. 182s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 182s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 182s Selecting previously unselected package libtk8.6:arm64. 182s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 182s Unpacking libtk8.6:arm64 (8.6.13-2) ... 182s Selecting previously unselected package libxt6t64:arm64. 183s Preparing to unpack .../127-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 183s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 183s Selecting previously unselected package libxmu6:arm64. 183s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 183s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 183s Selecting previously unselected package libxpm4:arm64. 183s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 183s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 183s Selecting previously unselected package libxaw7:arm64. 183s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 183s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 183s Selecting previously unselected package libxi6:arm64. 183s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 183s Unpacking libxi6:arm64 (2:1.8.1-1) ... 183s Selecting previously unselected package libzzip-0-13:arm64. 183s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 183s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 183s Selecting previously unselected package zip. 183s Preparing to unpack .../133-zip_3.0-13_arm64.deb ... 183s Unpacking zip (3.0-13) ... 183s Selecting previously unselected package unzip. 184s Preparing to unpack .../134-unzip_6.0-28ubuntu3_arm64.deb ... 184s Unpacking unzip (6.0-28ubuntu3) ... 184s Selecting previously unselected package xdg-utils. 184s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 184s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 184s Selecting previously unselected package r-base-core. 184s Preparing to unpack .../136-r-base-core_4.3.3-2build1_arm64.deb ... 184s Unpacking r-base-core (4.3.3-2build1) ... 184s Selecting previously unselected package r-cran-littler. 184s Preparing to unpack .../137-r-cran-littler_0.3.19-1_arm64.deb ... 184s Unpacking r-cran-littler (0.3.19-1) ... 185s Selecting previously unselected package littler. 185s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 185s Unpacking littler (0.3.19-1) ... 185s Selecting previously unselected package node-bootstrap-sass. 185s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 185s Unpacking node-bootstrap-sass (3.4.3-2) ... 185s Selecting previously unselected package node-html5shiv. 185s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 185s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 185s Selecting previously unselected package node-normalize.css. 185s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 185s Unpacking node-normalize.css (8.0.1-5) ... 185s Selecting previously unselected package pandoc-data. 186s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 186s Unpacking pandoc-data (3.1.3-1) ... 186s Selecting previously unselected package pandoc. 186s Preparing to unpack .../143-pandoc_3.1.3+ds-2_arm64.deb ... 186s Unpacking pandoc (3.1.3+ds-2) ... 187s Selecting previously unselected package pkgconf-bin. 187s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_arm64.deb ... 187s Unpacking pkgconf-bin (1.8.1-2) ... 187s Selecting previously unselected package pkgconf:arm64. 187s Preparing to unpack .../145-pkgconf_1.8.1-2_arm64.deb ... 187s Unpacking pkgconf:arm64 (1.8.1-2) ... 188s Selecting previously unselected package pkg-config:arm64. 188s Preparing to unpack .../146-pkg-config_1.8.1-2_arm64.deb ... 188s Unpacking pkg-config:arm64 (1.8.1-2) ... 188s Selecting previously unselected package liblzma-dev:arm64. 188s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 188s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 188s Selecting previously unselected package r-base-dev. 188s Preparing to unpack .../148-r-base-dev_4.3.3-2build1_all.deb ... 188s Unpacking r-base-dev (4.3.3-2build1) ... 188s Selecting previously unselected package pkg-r-autopkgtest. 188s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 188s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 188s Selecting previously unselected package r-bioc-biocgenerics. 188s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 188s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 188s Selecting previously unselected package r-bioc-biobase. 188s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_arm64.deb ... 188s Unpacking r-bioc-biobase (2.62.0-1) ... 188s Selecting previously unselected package r-bioc-s4vectors. 189s Preparing to unpack .../152-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 189s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 189s Selecting previously unselected package r-bioc-iranges. 189s Preparing to unpack .../153-r-bioc-iranges_2.36.0-1_arm64.deb ... 189s Unpacking r-bioc-iranges (2.36.0-1) ... 189s Selecting previously unselected package r-cran-dbi. 189s Preparing to unpack .../154-r-cran-dbi_1.2.2-1_all.deb ... 189s Unpacking r-cran-dbi (1.2.2-1) ... 189s Selecting previously unselected package r-cran-bit. 189s Preparing to unpack .../155-r-cran-bit_4.0.5-1_arm64.deb ... 189s Unpacking r-cran-bit (4.0.5-1) ... 189s Selecting previously unselected package r-cran-bit64. 189s Preparing to unpack .../156-r-cran-bit64_4.0.5-1_arm64.deb ... 189s Unpacking r-cran-bit64 (4.0.5-1) ... 190s Selecting previously unselected package r-cran-rlang. 190s Preparing to unpack .../157-r-cran-rlang_1.1.3-1_arm64.deb ... 190s Unpacking r-cran-rlang (1.1.3-1) ... 190s Selecting previously unselected package r-cran-cli. 190s Preparing to unpack .../158-r-cran-cli_3.6.2-1_arm64.deb ... 190s Unpacking r-cran-cli (3.6.2-1) ... 190s Selecting previously unselected package r-cran-glue. 190s Preparing to unpack .../159-r-cran-glue_1.7.0-1_arm64.deb ... 190s Unpacking r-cran-glue (1.7.0-1) ... 190s Selecting previously unselected package r-cran-lifecycle. 190s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 190s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 190s Selecting previously unselected package r-cran-vctrs. 190s Preparing to unpack .../161-r-cran-vctrs_0.6.5-1_arm64.deb ... 190s Unpacking r-cran-vctrs (0.6.5-1) ... 190s Selecting previously unselected package r-cran-blob. 190s Preparing to unpack .../162-r-cran-blob_1.2.4-1_all.deb ... 190s Unpacking r-cran-blob (1.2.4-1) ... 190s Selecting previously unselected package r-cran-fastmap. 190s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_arm64.deb ... 190s Unpacking r-cran-fastmap (1.1.1-1) ... 190s Selecting previously unselected package r-cran-cachem. 191s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 191s Unpacking r-cran-cachem (1.0.8-1) ... 191s Selecting previously unselected package r-cran-memoise. 191s Preparing to unpack .../165-r-cran-memoise_2.0.1-1_all.deb ... 191s Unpacking r-cran-memoise (2.0.1-1) ... 191s Selecting previously unselected package r-cran-pkgconfig. 192s Preparing to unpack .../166-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 192s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 192s Selecting previously unselected package r-cran-plogr. 192s Preparing to unpack .../167-r-cran-plogr_0.2.0-3build1_all.deb ... 192s Unpacking r-cran-plogr (0.2.0-3build1) ... 192s Selecting previously unselected package r-cran-cpp11. 192s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 192s Unpacking r-cran-cpp11 (0.4.7-1) ... 192s Selecting previously unselected package r-cran-rsqlite. 192s Preparing to unpack .../169-r-cran-rsqlite_2.3.4-1_arm64.deb ... 192s Unpacking r-cran-rsqlite (2.3.4-1) ... 193s Selecting previously unselected package r-cran-curl. 193s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 193s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 193s Selecting previously unselected package r-cran-jsonlite. 193s Preparing to unpack .../171-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 193s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 193s Selecting previously unselected package r-cran-mime. 193s Preparing to unpack .../172-r-cran-mime_0.12-1_arm64.deb ... 193s Unpacking r-cran-mime (0.12-1) ... 193s Selecting previously unselected package r-cran-sys. 194s Preparing to unpack .../173-r-cran-sys_3.4.2-1_arm64.deb ... 194s Unpacking r-cran-sys (3.4.2-1) ... 194s Selecting previously unselected package r-cran-askpass. 194s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_arm64.deb ... 194s Unpacking r-cran-askpass (1.2.0-1) ... 194s Selecting previously unselected package r-cran-openssl. 194s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 194s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 194s Selecting previously unselected package r-cran-r6. 195s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 195s Unpacking r-cran-r6 (2.5.1-1) ... 195s Selecting previously unselected package r-cran-httr. 195s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 195s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 195s Selecting previously unselected package r-cran-png. 195s Preparing to unpack .../178-r-cran-png_0.1-8-1_arm64.deb ... 195s Unpacking r-cran-png (0.1-8-1) ... 195s Selecting previously unselected package r-bioc-zlibbioc. 196s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 196s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 196s Selecting previously unselected package r-bioc-xvector. 196s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_arm64.deb ... 196s Unpacking r-bioc-xvector (0.42.0-1) ... 196s Selecting previously unselected package r-cran-bitops. 197s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_arm64.deb ... 197s Unpacking r-cran-bitops (1.0-7-1) ... 197s Selecting previously unselected package r-cran-rcurl. 198s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 198s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 198s Selecting previously unselected package r-bioc-genomeinfodbdata. 199s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 199s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 199s Selecting previously unselected package r-bioc-genomeinfodb. 199s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 199s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 200s Selecting previously unselected package r-cran-crayon. 200s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 200s Unpacking r-cran-crayon (1.5.2-1) ... 200s Selecting previously unselected package r-bioc-biostrings. 201s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 201s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 202s Selecting previously unselected package r-bioc-keggrest. 202s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 202s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 202s Selecting previously unselected package r-bioc-annotationdbi. 203s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 203s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 203s Selecting previously unselected package r-cran-r.methodss3. 203s Preparing to unpack .../189-r-cran-r.methodss3_1.8.2-1_all.deb ... 203s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 203s Selecting previously unselected package r-cran-r.oo. 203s Preparing to unpack .../190-r-cran-r.oo_1.26.0-1_all.deb ... 203s Unpacking r-cran-r.oo (1.26.0-1) ... 204s Selecting previously unselected package r-cran-r.utils. 204s Preparing to unpack .../191-r-cran-r.utils_2.12.3-1_all.deb ... 204s Unpacking r-cran-r.utils (2.12.3-1) ... 204s Selecting previously unselected package r-cran-matrixstats. 204s Preparing to unpack .../192-r-cran-matrixstats_1.2.0-1_arm64.deb ... 204s Unpacking r-cran-matrixstats (1.2.0-1) ... 204s Selecting previously unselected package r-bioc-aroma.light. 204s Preparing to unpack .../193-r-bioc-aroma.light_3.32.0-1_all.deb ... 204s Unpacking r-bioc-aroma.light (3.32.0-1) ... 205s Selecting previously unselected package r-cran-generics. 205s Preparing to unpack .../194-r-cran-generics_0.1.3-1_all.deb ... 205s Unpacking r-cran-generics (0.1.3-1) ... 205s Selecting previously unselected package r-cran-magrittr. 205s Preparing to unpack .../195-r-cran-magrittr_2.0.3-1_arm64.deb ... 205s Unpacking r-cran-magrittr (2.0.3-1) ... 205s Selecting previously unselected package r-cran-fansi. 206s Preparing to unpack .../196-r-cran-fansi_1.0.5-1_arm64.deb ... 206s Unpacking r-cran-fansi (1.0.5-1) ... 206s Selecting previously unselected package r-cran-utf8. 206s Preparing to unpack .../197-r-cran-utf8_1.2.4-1_arm64.deb ... 206s Unpacking r-cran-utf8 (1.2.4-1) ... 206s Selecting previously unselected package r-cran-pillar. 206s Preparing to unpack .../198-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 206s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 206s Selecting previously unselected package r-cran-tibble. 206s Preparing to unpack .../199-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 206s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 206s Selecting previously unselected package r-cran-withr. 206s Preparing to unpack .../200-r-cran-withr_2.5.0-1_all.deb ... 206s Unpacking r-cran-withr (2.5.0-1) ... 206s Selecting previously unselected package r-cran-tidyselect. 206s Preparing to unpack .../201-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 206s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 206s Selecting previously unselected package r-cran-dplyr. 206s Preparing to unpack .../202-r-cran-dplyr_1.1.4-1_arm64.deb ... 206s Unpacking r-cran-dplyr (1.1.4-1) ... 206s Selecting previously unselected package r-cran-purrr. 206s Preparing to unpack .../203-r-cran-purrr_1.0.2-1_arm64.deb ... 206s Unpacking r-cran-purrr (1.0.2-1) ... 206s Selecting previously unselected package r-cran-stringi. 207s Preparing to unpack .../204-r-cran-stringi_1.8.3-1_arm64.deb ... 207s Unpacking r-cran-stringi (1.8.3-1) ... 207s Selecting previously unselected package r-cran-stringr. 207s Preparing to unpack .../205-r-cran-stringr_1.5.1-1_all.deb ... 207s Unpacking r-cran-stringr (1.5.1-1) ... 207s Selecting previously unselected package r-cran-tidyr. 207s Preparing to unpack .../206-r-cran-tidyr_1.3.1-1_arm64.deb ... 207s Unpacking r-cran-tidyr (1.3.1-1) ... 207s Selecting previously unselected package r-cran-dbplyr. 207s Preparing to unpack .../207-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 207s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 207s Selecting previously unselected package r-cran-filelock. 207s Preparing to unpack .../208-r-cran-filelock_1.0.3-1_arm64.deb ... 207s Unpacking r-cran-filelock (1.0.3-1) ... 207s Selecting previously unselected package r-bioc-biocfilecache. 207s Preparing to unpack .../209-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 207s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 207s Selecting previously unselected package r-bioc-biocio. 207s Preparing to unpack .../210-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 207s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 207s Selecting previously unselected package r-cran-formatr. 207s Preparing to unpack .../211-r-cran-formatr_1.14-1_all.deb ... 207s Unpacking r-cran-formatr (1.14-1) ... 207s Selecting previously unselected package r-cran-lambda.r. 207s Preparing to unpack .../212-r-cran-lambda.r_1.2.4-2build1_all.deb ... 207s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 207s Selecting previously unselected package r-cran-futile.options. 207s Preparing to unpack .../213-r-cran-futile.options_1.0.1-3build1_all.deb ... 207s Unpacking r-cran-futile.options (1.0.1-3build1) ... 207s Selecting previously unselected package r-cran-futile.logger. 208s Preparing to unpack .../214-r-cran-futile.logger_1.4.3-4build1_all.deb ... 208s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 208s Selecting previously unselected package r-cran-snow. 208s Preparing to unpack .../215-r-cran-snow_1%3a0.4.4-2_all.deb ... 208s Unpacking r-cran-snow (1:0.4.4-2) ... 208s Selecting previously unselected package r-cran-codetools. 208s Preparing to unpack .../216-r-cran-codetools_0.2-19-1_all.deb ... 208s Unpacking r-cran-codetools (0.2-19-1) ... 208s Selecting previously unselected package r-cran-bh. 208s Preparing to unpack .../217-r-cran-bh_1.84.0-1_all.deb ... 208s Unpacking r-cran-bh (1.84.0-1) ... 208s Selecting previously unselected package r-bioc-biocparallel. 209s Preparing to unpack .../218-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 209s Unpacking r-bioc-biocparallel (1.36.0-1) ... 209s Selecting previously unselected package r-cran-base64enc. 209s Preparing to unpack .../219-r-cran-base64enc_0.1-3-3_arm64.deb ... 209s Unpacking r-cran-base64enc (0.1-3-3) ... 209s Selecting previously unselected package r-cran-digest. 209s Preparing to unpack .../220-r-cran-digest_0.6.34-1_arm64.deb ... 209s Unpacking r-cran-digest (0.6.34-1) ... 209s Selecting previously unselected package r-cran-ellipsis. 209s Preparing to unpack .../221-r-cran-ellipsis_0.3.2-2_arm64.deb ... 209s Unpacking r-cran-ellipsis (0.3.2-2) ... 209s Selecting previously unselected package r-cran-htmltools. 209s Preparing to unpack .../222-r-cran-htmltools_0.5.7-1_arm64.deb ... 209s Unpacking r-cran-htmltools (0.5.7-1) ... 209s Selecting previously unselected package r-cran-evaluate. 209s Preparing to unpack .../223-r-cran-evaluate_0.23-1_all.deb ... 209s Unpacking r-cran-evaluate (0.23-1) ... 209s Selecting previously unselected package r-cran-xfun. 209s Preparing to unpack .../224-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 209s Unpacking r-cran-xfun (0.41+dfsg-1) ... 209s Selecting previously unselected package r-cran-highr. 209s Preparing to unpack .../225-r-cran-highr_0.10+dfsg-1_all.deb ... 209s Unpacking r-cran-highr (0.10+dfsg-1) ... 209s Selecting previously unselected package r-cran-yaml. 209s Preparing to unpack .../226-r-cran-yaml_2.3.8-1_arm64.deb ... 209s Unpacking r-cran-yaml (2.3.8-1) ... 209s Selecting previously unselected package libjs-mathjax. 209s Preparing to unpack .../227-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 209s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 210s Selecting previously unselected package r-cran-knitr. 210s Preparing to unpack .../228-r-cran-knitr_1.45+dfsg-1_all.deb ... 210s Unpacking r-cran-knitr (1.45+dfsg-1) ... 210s Selecting previously unselected package r-cran-jquerylib. 210s Preparing to unpack .../229-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 210s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 210s Selecting previously unselected package r-cran-fs. 210s Preparing to unpack .../230-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 210s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 210s Selecting previously unselected package r-cran-rappdirs. 210s Preparing to unpack .../231-r-cran-rappdirs_0.3.3-1_arm64.deb ... 210s Unpacking r-cran-rappdirs (0.3.3-1) ... 210s Selecting previously unselected package r-cran-sass. 210s Preparing to unpack .../232-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 210s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 210s Selecting previously unselected package r-cran-bslib. 210s Preparing to unpack .../233-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 210s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 210s Selecting previously unselected package r-cran-fontawesome. 211s Preparing to unpack .../234-r-cran-fontawesome_0.5.2-1_all.deb ... 211s Unpacking r-cran-fontawesome (0.5.2-1) ... 211s Selecting previously unselected package r-cran-tinytex. 211s Preparing to unpack .../235-r-cran-tinytex_0.49-1_all.deb ... 211s Unpacking r-cran-tinytex (0.49-1) ... 211s Selecting previously unselected package libjs-modernizr. 211s Preparing to unpack .../236-libjs-modernizr_2.6.2+ds1-5_all.deb ... 211s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 211s Selecting previously unselected package r-cran-pkgkitten. 211s Preparing to unpack .../237-r-cran-pkgkitten_0.2.3-1_all.deb ... 211s Unpacking r-cran-pkgkitten (0.2.3-1) ... 211s Selecting previously unselected package r-cran-rcpp. 211s Preparing to unpack .../238-r-cran-rcpp_1.0.12-1_arm64.deb ... 211s Unpacking r-cran-rcpp (1.0.12-1) ... 211s Selecting previously unselected package r-cran-later. 211s Preparing to unpack .../239-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 211s Unpacking r-cran-later (1.3.2+dfsg-1) ... 211s Selecting previously unselected package r-cran-promises. 211s Preparing to unpack .../240-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 211s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 211s Selecting previously unselected package r-cran-httpuv. 211s Preparing to unpack .../241-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 211s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 211s Selecting previously unselected package r-cran-xtable. 211s Preparing to unpack .../242-r-cran-xtable_1%3a1.8-4-2_all.deb ... 211s Unpacking r-cran-xtable (1:1.8-4-2) ... 211s Selecting previously unselected package r-cran-sourcetools. 211s Preparing to unpack .../243-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 211s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 211s Selecting previously unselected package r-cran-commonmark. 211s Preparing to unpack .../244-r-cran-commonmark_1.9.1-1_arm64.deb ... 211s Unpacking r-cran-commonmark (1.9.1-1) ... 211s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 211s Preparing to unpack .../245-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 211s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 211s Selecting previously unselected package r-cran-shiny. 211s Preparing to unpack .../246-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 211s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 211s Selecting previously unselected package r-cran-rmarkdown. 211s Preparing to unpack .../247-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 211s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 211s Selecting previously unselected package r-cran-bookdown. 211s Preparing to unpack .../248-r-cran-bookdown_0.37+dfsg-1_all.deb ... 211s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 211s Selecting previously unselected package r-cran-biocmanager. 211s Preparing to unpack .../249-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 211s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 211s Selecting previously unselected package tex-common. 212s Preparing to unpack .../250-tex-common_6.18_all.deb ... 212s Unpacking tex-common (6.18) ... 212s Selecting previously unselected package t1utils. 212s Preparing to unpack .../251-t1utils_1.41-4build2_arm64.deb ... 212s Unpacking t1utils (1.41-4build2) ... 212s Selecting previously unselected package texlive-binaries. 212s Preparing to unpack .../252-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 212s Unpacking texlive-binaries (2023.20230311.66589-9) ... 212s Selecting previously unselected package texlive-base. 212s Preparing to unpack .../253-texlive-base_2023.20240207-1_all.deb ... 212s Unpacking texlive-base (2023.20240207-1) ... 213s Selecting previously unselected package texlive-latex-base. 213s Preparing to unpack .../254-texlive-latex-base_2023.20240207-1_all.deb ... 213s Unpacking texlive-latex-base (2023.20240207-1) ... 214s Selecting previously unselected package texlive-bibtex-extra. 214s Preparing to unpack .../255-texlive-bibtex-extra_2023.20240207-1_all.deb ... 214s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 217s Selecting previously unselected package r-bioc-biocstyle. 217s Preparing to unpack .../256-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 217s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 217s Selecting previously unselected package r-cran-xml. 217s Preparing to unpack .../257-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 217s Unpacking r-cran-xml (3.99-0.16.1-1) ... 217s Selecting previously unselected package r-cran-hms. 217s Preparing to unpack .../258-r-cran-hms_1.1.3-1_all.deb ... 217s Unpacking r-cran-hms (1.1.3-1) ... 217s Selecting previously unselected package r-cran-prettyunits. 217s Preparing to unpack .../259-r-cran-prettyunits_1.2.0-1_all.deb ... 217s Unpacking r-cran-prettyunits (1.2.0-1) ... 217s Selecting previously unselected package r-cran-progress. 217s Preparing to unpack .../260-r-cran-progress_1.2.3-1_all.deb ... 217s Unpacking r-cran-progress (1.2.3-1) ... 217s Selecting previously unselected package r-cran-xml2. 217s Preparing to unpack .../261-r-cran-xml2_1.3.6-1_arm64.deb ... 217s Unpacking r-cran-xml2 (1.3.6-1) ... 218s Selecting previously unselected package r-bioc-biomart. 218s Preparing to unpack .../262-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 218s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 218s Selecting previously unselected package r-cran-lattice. 218s Preparing to unpack .../263-r-cran-lattice_0.22-5-1_arm64.deb ... 218s Unpacking r-cran-lattice (0.22-5-1) ... 218s Selecting previously unselected package r-cran-matrix. 218s Preparing to unpack .../264-r-cran-matrix_1.6-5-1_arm64.deb ... 218s Unpacking r-cran-matrix (1.6-5-1) ... 218s Selecting previously unselected package r-bioc-matrixgenerics. 218s Preparing to unpack .../265-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 218s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 218s Selecting previously unselected package r-cran-abind. 218s Preparing to unpack .../266-r-cran-abind_1.4-5-2_all.deb ... 218s Unpacking r-cran-abind (1.4-5-2) ... 218s Selecting previously unselected package r-bioc-s4arrays. 218s Preparing to unpack .../267-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 218s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 218s Selecting previously unselected package r-bioc-sparsearray. 218s Preparing to unpack .../268-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 218s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 218s Selecting previously unselected package r-bioc-delayedarray. 218s Preparing to unpack .../269-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 218s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 218s Selecting previously unselected package r-bioc-genomicranges. 218s Preparing to unpack .../270-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 218s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 218s Selecting previously unselected package r-bioc-summarizedexperiment. 218s Preparing to unpack .../271-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 218s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 218s Selecting previously unselected package r-cran-locfit. 218s Preparing to unpack .../272-r-cran-locfit_1.5-9.8-1_arm64.deb ... 218s Unpacking r-cran-locfit (1.5-9.8-1) ... 218s Selecting previously unselected package r-cran-gtable. 218s Preparing to unpack .../273-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 218s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 218s Selecting previously unselected package r-cran-isoband. 218s Preparing to unpack .../274-r-cran-isoband_0.2.7-1_arm64.deb ... 218s Unpacking r-cran-isoband (0.2.7-1) ... 218s Selecting previously unselected package r-cran-mass. 218s Preparing to unpack .../275-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 218s Unpacking r-cran-mass (7.3-60.0.1-1) ... 219s Selecting previously unselected package r-cran-nlme. 219s Preparing to unpack .../276-r-cran-nlme_3.1.164-1_arm64.deb ... 219s Unpacking r-cran-nlme (3.1.164-1) ... 219s Selecting previously unselected package r-cran-mgcv. 219s Preparing to unpack .../277-r-cran-mgcv_1.9-1-1_arm64.deb ... 219s Unpacking r-cran-mgcv (1.9-1-1) ... 219s Selecting previously unselected package r-cran-farver. 219s Preparing to unpack .../278-r-cran-farver_2.1.1-1_arm64.deb ... 219s Unpacking r-cran-farver (2.1.1-1) ... 219s Selecting previously unselected package r-cran-labeling. 219s Preparing to unpack .../279-r-cran-labeling_0.4.3-1_all.deb ... 219s Unpacking r-cran-labeling (0.4.3-1) ... 219s Selecting previously unselected package r-cran-colorspace. 219s Preparing to unpack .../280-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 219s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 219s Selecting previously unselected package r-cran-munsell. 219s Preparing to unpack .../281-r-cran-munsell_0.5.0-2build1_all.deb ... 219s Unpacking r-cran-munsell (0.5.0-2build1) ... 219s Selecting previously unselected package r-cran-rcolorbrewer. 219s Preparing to unpack .../282-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 219s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 219s Selecting previously unselected package r-cran-viridislite. 219s Preparing to unpack .../283-r-cran-viridislite_0.4.2-2_all.deb ... 219s Unpacking r-cran-viridislite (0.4.2-2) ... 219s Selecting previously unselected package r-cran-scales. 219s Preparing to unpack .../284-r-cran-scales_1.3.0-1_all.deb ... 219s Unpacking r-cran-scales (1.3.0-1) ... 219s Selecting previously unselected package r-cran-ggplot2. 219s Preparing to unpack .../285-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 219s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 219s Selecting previously unselected package r-cran-rcpparmadillo. 219s Preparing to unpack .../286-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ... 219s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 219s Selecting previously unselected package r-bioc-deseq2. 219s Preparing to unpack .../287-r-bioc-deseq2_1.42.0+dfsg-1_arm64.deb ... 219s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 220s Selecting previously unselected package r-bioc-rhtslib. 220s Preparing to unpack .../288-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 220s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 220s Selecting previously unselected package r-bioc-rsamtools. 220s Preparing to unpack .../289-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 220s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 220s Selecting previously unselected package r-bioc-genomicalignments. 220s Preparing to unpack .../290-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 220s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 220s Selecting previously unselected package r-cran-hwriter. 220s Preparing to unpack .../291-r-cran-hwriter_1.3.2.1-1_all.deb ... 220s Unpacking r-cran-hwriter (1.3.2.1-1) ... 220s Selecting previously unselected package r-cran-jpeg. 220s Preparing to unpack .../292-r-cran-jpeg_0.1-10-1_arm64.deb ... 220s Unpacking r-cran-jpeg (0.1-10-1) ... 220s Selecting previously unselected package r-cran-deldir. 220s Preparing to unpack .../293-r-cran-deldir_2.0-4-1_arm64.deb ... 220s Unpacking r-cran-deldir (2.0-4-1) ... 220s Selecting previously unselected package r-cran-rcppeigen. 220s Preparing to unpack .../294-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 220s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 220s Selecting previously unselected package r-cran-interp. 220s Preparing to unpack .../295-r-cran-interp_1.1-6-1_arm64.deb ... 220s Unpacking r-cran-interp (1.1-6-1) ... 220s Selecting previously unselected package r-cran-latticeextra. 220s Preparing to unpack .../296-r-cran-latticeextra_0.6-30-1_all.deb ... 220s Unpacking r-cran-latticeextra (0.6-30-1) ... 220s Selecting previously unselected package r-bioc-shortread. 220s Preparing to unpack .../297-r-bioc-shortread_1.60.0-2_arm64.deb ... 220s Unpacking r-bioc-shortread (1.60.0-2) ... 221s Selecting previously unselected package r-cran-rjson. 221s Preparing to unpack .../298-r-cran-rjson_0.2.21-1_arm64.deb ... 221s Unpacking r-cran-rjson (0.2.21-1) ... 221s Selecting previously unselected package r-cran-restfulr. 221s Preparing to unpack .../299-r-cran-restfulr_0.0.15-1_arm64.deb ... 221s Unpacking r-cran-restfulr (0.0.15-1) ... 221s Selecting previously unselected package r-bioc-rtracklayer. 221s Preparing to unpack .../300-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 221s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 221s Selecting previously unselected package r-bioc-genomicfeatures. 221s Preparing to unpack .../301-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 221s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 221s Selecting previously unselected package r-bioc-edaseq. 221s 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... 231s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 231s Setting up r-cran-utf8 (1.2.4-1) ... 231s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 231s Setting up r-cran-stringi (1.8.3-1) ... 231s Setting up texlive-latex-base (2023.20240207-1) ... 231s Setting up r-cran-hwriter (1.3.2.1-1) ... 231s Setting up r-cran-cpp11 (0.4.7-1) ... 231s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 231s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 231s Setting up r-cran-isoband (0.2.7-1) ... 231s Setting up r-cran-futile.logger (1.4.3-4build1) ... 231s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 231s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 231s Setting up r-cran-later (1.3.2+dfsg-1) ... 231s Setting up r-cran-matrix (1.6-5-1) ... 231s Setting up r-cran-tinytex (0.49-1) ... 231s Setting up r-cran-kernsmooth (2.23-22-1) ... 231s Setting up r-cran-knitr (1.45+dfsg-1) ... 231s Setting up r-cran-mgcv (1.9-1-1) ... 231s Setting up g++ (4:13.2.0-7ubuntu1) ... 231s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 231s Setting up r-cran-cachem (1.0.8-1) ... 231s Setting up build-essential (12.10ubuntu1) ... 231s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 231s Setting up r-bioc-iranges (2.36.0-1) ... 231s Setting up r-cran-rjson (0.2.21-1) ... 231s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 231s Setting up r-cran-restfulr (0.0.15-1) ... 231s Setting up r-cran-vctrs (0.6.5-1) ... 231s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 231s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 231s Setting up r-cran-ellipsis (0.3.2-2) ... 231s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 231s Setting up r-base-dev (4.3.3-2build1) ... 231s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 231s Setting up r-cran-stringr (1.5.1-1) ... 231s Setting up r-bioc-biocparallel (1.36.0-1) ... 231s Setting up r-cran-callr (3.7.3-2) ... 231s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 231s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 231s Setting up r-cran-desc (1.4.3-1) ... 231s Setting up r-cran-xml2 (1.3.6-1) ... 231s Setting up r-cran-munsell (0.5.0-2build1) ... 231s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 231s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 231s Setting up r-cran-r.oo (1.26.0-1) ... 231s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 231s Setting up texlive-bibtex-extra (2023.20240207-1) ... 231s Setting up r-cran-interp (1.1-6-1) ... 231s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 231s Setting up r-cran-httr (1.4.7+dfsg-1) ... 231s Setting up r-cran-hms (1.1.3-1) ... 231s Setting up r-cran-scales (1.3.0-1) ... 231s Setting up r-cran-memoise (2.0.1-1) ... 231s Setting up r-cran-promises (1.2.1+dfsg-1) ... 231s Setting up r-cran-purrr (1.0.2-1) ... 231s Setting up r-cran-blob (1.2.4-1) ... 231s Setting up r-cran-htmltools (0.5.7-1) ... 231s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 231s Setting up r-bioc-xvector (0.42.0-1) ... 231s Setting up r-cran-pkgbuild (1.4.3-1) ... 231s Setting up r-cran-sass (0.4.8+dfsg-1) ... 231s Setting up r-cran-dplyr (1.1.4-1) ... 231s Setting up r-cran-rsqlite (2.3.4-1) ... 231s Setting up r-cran-progress (1.2.3-1) ... 231s Setting up r-cran-pkgload (1.3.4-1) ... 231s Setting up r-cran-r.utils (2.12.3-1) ... 231s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 231s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 231s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 231s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 231s Setting up r-cran-rematch2 (2.1.2-2build1) ... 231s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 231s Setting up r-cran-fontawesome (0.5.2-1) ... 231s Setting up r-cran-latticeextra (0.6-30-1) ... 231s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 231s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 231s Setting up r-cran-waldo (0.5.2-1build1) ... 231s Setting up r-cran-tidyr (1.3.1-1) ... 231s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 231s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 231s Setting up r-bioc-aroma.light (3.32.0-1) ... 231s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 231s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 231s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 231s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 231s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 231s Setting up r-bioc-annotationdbi (1.64.1-1) ... 231s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 231s Setting up r-cran-testthat (3.2.1-1) ... 231s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 231s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 231s Setting up r-bioc-genomicalignments (1.38.2-1) ... 231s Setting up r-cran-bookdown (0.37+dfsg-1) ... 231s Setting up r-bioc-rtracklayer (1.62.0-1) ... 231s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 231s Setting up r-bioc-shortread (1.60.0-2) ... 231s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 231s Setting up r-bioc-edaseq (2.36.0+dfsg-1) ... 231s Setting up autopkgtest-satdep (0) ... 231s Processing triggers for man-db (2.12.0-3) ... 232s Processing triggers for install-info (7.1-3) ... 232s Processing triggers for libc-bin (2.39-0ubuntu2) ... 232s Processing triggers for tex-common (6.18) ... 233s Running updmap-sys. This may take some time... done. 233s Running mktexlsr /var/lib/texmf ... done. 233s Building format(s) --all. 271s This may take some time... done. 288s (Reading database ... 129057 files and directories currently installed.) 288s Removing autopkgtest-satdep (0) ... 289s autopkgtest [17:34:03]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 289s autopkgtest [17:34:03]: test pkg-r-autopkgtest: [----------------------- 289s Test: Try to load the R library EDASeq 290s 290s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 290s Copyright (C) 2024 The R Foundation for Statistical Computing 290s Platform: aarch64-unknown-linux-gnu (64-bit) 290s 290s R is free software and comes with ABSOLUTELY NO WARRANTY. 290s You are welcome to redistribute it under certain conditions. 290s Type 'license()' or 'licence()' for distribution details. 290s 290s R is a collaborative project with many contributors. 290s Type 'contributors()' for more information and 290s 'citation()' on how to cite R or R packages in publications. 290s 290s Type 'demo()' for some demos, 'help()' for on-line help, or 290s 'help.start()' for an HTML browser interface to help. 290s Type 'q()' to quit R. 290s 290s > library('EDASeq') 290s Loading required package: Biobase 290s Loading required package: BiocGenerics 290s 290s Attaching package: ‘BiocGenerics’ 290s 290s The following objects are masked from ‘package:stats’: 290s 290s IQR, mad, sd, var, xtabs 290s 290s The following objects are masked from ‘package:base’: 290s 290s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 290s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 290s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 290s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 290s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 290s table, tapply, union, unique, unsplit, which.max, which.min 290s 290s Welcome to Bioconductor 290s 290s Vignettes contain introductory material; view with 290s 'browseVignettes()'. To cite Bioconductor, see 290s 'citation("Biobase")', and for packages 'citation("pkgname")'. 290s 290s Loading required package: ShortRead 290s Loading required package: BiocParallel 290s Loading required package: Biostrings 290s Loading required package: S4Vectors 290s Loading required package: stats4 291s 291s Attaching package: ‘S4Vectors’ 291s 291s The following object is masked from ‘package:utils’: 291s 291s findMatches 291s 291s The following objects are masked from ‘package:base’: 291s 291s expand.grid, I, unname 291s 291s Loading required package: IRanges 292s Loading required package: XVector 292s Loading required package: GenomeInfoDb 293s 293s Attaching package: ‘Biostrings’ 293s 293s The following object is masked from ‘package:base’: 293s 293s strsplit 293s 293s Loading required package: Rsamtools 293s Loading required package: GenomicRanges 293s Loading required package: GenomicAlignments 293s Loading required package: SummarizedExperiment 293s Loading required package: MatrixGenerics 293s Loading required package: matrixStats 293s 293s Attaching package: ‘matrixStats’ 293s 293s The following objects are masked from ‘package:Biobase’: 293s 293s anyMissing, rowMedians 293s 293s 293s Attaching package: ‘MatrixGenerics’ 293s 293s The following objects are masked from ‘package:matrixStats’: 293s 293s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 293s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 293s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 293s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 293s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 293s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 293s colWeightedMeans, colWeightedMedians, colWeightedSds, 293s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 293s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 293s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 293s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 293s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 293s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 293s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 293s rowWeightedSds, rowWeightedVars 293s 293s The following object is masked from ‘package:Biobase’: 293s 293s rowMedians 293s 302s > 302s > 302s Other tests are currently unsupported! 302s They will be progressively added. 302s autopkgtest [17:34:16]: test pkg-r-autopkgtest: -----------------------] 303s autopkgtest [17:34:17]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 303s pkg-r-autopkgtest PASS 303s autopkgtest [17:34:17]: @@@@@@@@@@@@@@@@@@@@ summary 303s pkg-r-autopkgtest PASS 314s Creating nova instance adt-noble-arm64-r-bioc-edaseq-20240316-172914-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...