0s autopkgtest [13:40:43]: starting date and time: 2024-03-16 13:40:43+0000 0s autopkgtest [13:40:43]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:40:43]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.23wilek5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-edaseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-25.secgroup --name adt-noble-arm64-r-bioc-edaseq-20240316-134043-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 151s autopkgtest [13:43:14]: testbed dpkg architecture: arm64 152s autopkgtest [13:43:15]: testbed apt version: 2.7.12 152s autopkgtest [13:43:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 154s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 156s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 156s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 157s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 157s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 157s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 157s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 157s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 157s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 157s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 157s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 157s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 157s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 160s Fetched 9092 kB in 4s (2572 kB/s) 160s Reading package lists... 166s Reading package lists... 166s Building dependency tree... 166s Reading state information... 167s Calculating upgrade... 167s The following packages will be REMOVED: 167s libssl3 167s The following NEW packages will be installed: 167s libssl3t64 167s The following packages have been kept back: 167s curl 167s The following packages will be upgraded: 167s openssl ubuntu-minimal ubuntu-standard 168s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 168s Need to get 2775 kB of archives. 168s After this operation, 72.7 kB of additional disk space will be used. 168s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 168s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 168s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 168s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 170s Fetched 2775 kB in 1s (3962 kB/s) 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 170s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 170s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 171s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 171s wget depends on libssl3 (>= 3.0.0). 171s u-boot-tools depends on libssl3 (>= 3.0.0). 171s tnftp depends on libssl3 (>= 3.0.0). 171s tcpdump depends on libssl3 (>= 3.0.0). 171s systemd-resolved depends on libssl3 (>= 3.0.0). 171s systemd depends on libssl3 (>= 3.0.0). 171s sudo depends on libssl3 (>= 3.0.0). 171s sbsigntool depends on libssl3 (>= 3.0.0). 171s rsync depends on libssl3 (>= 3.0.0). 171s python3-cryptography depends on libssl3 (>= 3.0.0). 171s openssh-server depends on libssl3 (>= 3.0.10). 171s openssh-client depends on libssl3 (>= 3.0.10). 171s mtd-utils depends on libssl3 (>= 3.0.0). 171s mokutil depends on libssl3 (>= 3.0.0). 171s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 171s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 171s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 171s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 171s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 171s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 171s libnvme1 depends on libssl3 (>= 3.0.0). 171s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 171s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 171s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 171s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 171s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 171s kmod depends on libssl3 (>= 3.0.0). 171s dhcpcd-base depends on libssl3 (>= 3.0.0). 171s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 171s 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 171s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 171s Selecting previously unselected package libssl3t64:arm64. 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 171s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 171s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 172s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 172s Unpacking ubuntu-minimal (1.536) over (1.535) ... 172s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 172s Unpacking ubuntu-standard (1.536) over (1.535) ... 172s Setting up ubuntu-minimal (1.536) ... 172s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 172s Setting up ubuntu-standard (1.536) ... 172s Setting up openssl (3.0.13-0ubuntu1) ... 172s Processing triggers for man-db (2.12.0-3) ... 173s Processing triggers for libc-bin (2.39-0ubuntu2) ... 173s Reading package lists... 174s Building dependency tree... 174s Reading state information... 175s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 176s sh: Attempting to set up Debian/Ubuntu apt sources automatically 176s sh: Distribution appears to be Ubuntu 177s Reading package lists... 178s Building dependency tree... 178s Reading state information... 179s eatmydata is already the newest version (131-1). 179s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 179s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s dbus is already the newest version (1.14.10-4ubuntu1). 180s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 181s Reading package lists... 181s Building dependency tree... 181s Reading state information... 182s rng-tools-debian is already the newest version (2.4). 182s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 183s The following packages will be REMOVED: 183s cloud-init* python3-configobj* python3-debconf* 184s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 184s After this operation, 3252 kB disk space will be freed. 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 184s Removing cloud-init (24.1.1-0ubuntu1) ... 185s Removing python3-configobj (5.0.8-3) ... 185s Removing python3-debconf (1.5.86) ... 185s Processing triggers for man-db (2.12.0-3) ... 185s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74371 files and directories currently installed.) 185s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 186s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 186s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 186s invoke-rc.d: policy-rc.d denied execution of try-restart. 186s Reading package lists... 187s Building dependency tree... 187s Reading state information... 188s linux-generic is already the newest version (6.8.0-11.11+1). 188s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 188s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 188s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 188s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 191s Reading package lists... 191s Reading package lists... 191s Building dependency tree... 191s Reading state information... 192s Calculating upgrade... 192s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 192s Reading package lists... 193s Building dependency tree... 193s Reading state information... 194s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 194s autopkgtest [13:43:57]: rebooting testbed after setup commands that affected boot 357s autopkgtest [13:46:40]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 360s autopkgtest [13:46:43]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-edaseq 363s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (dsc) [2311 B] 363s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (tar) [119 kB] 363s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-edaseq 2.36.0+dfsg-1 (diff) [5568 B] 363s gpgv: Signature made Fri Dec 1 09:50:17 2023 UTC 363s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 363s gpgv: issuer "tillea@rki.de" 363s gpgv: Can't check signature: No public key 363s dpkg-source: warning: cannot verify inline signature for ./r-bioc-edaseq_2.36.0+dfsg-1.dsc: no acceptable signature found 363s autopkgtest [13:46:46]: testing package r-bioc-edaseq version 2.36.0+dfsg-1 364s autopkgtest [13:46:47]: build not needed 365s autopkgtest [13:46:48]: test pkg-r-autopkgtest: preparing testbed 367s Reading package lists... 367s Building dependency tree... 367s Reading state information... 367s Starting pkgProblemResolver with broken count: 0 367s Starting 2 pkgProblemResolver with broken count: 0 367s Done 368s The following additional packages will be installed: 368s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 368s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 368s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 368s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 368s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 368s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 368s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 368s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 368s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 368s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 368s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 368s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 368s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 368s libjs-highlight.js libjs-jquery libjs-jquery-datatables 368s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 368s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 368s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 368s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 368s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 368s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 368s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 368s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 368s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 368s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 368s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 368s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 368s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 368s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 368s r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase r-bioc-biocfilecache 368s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 368s r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 368s r-bioc-edaseq r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 368s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 368s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 368s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 368s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 368s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 368s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 368s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 368s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 368s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 368s r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-diffobj 368s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 368s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 368s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 368s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 368s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-hwriter 368s r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 368s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 368s r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler 368s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 368s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 368s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 368s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 368s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 368s r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 368s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 368s r-cran-rcppeigen r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 368s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass 368s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod 368s r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble 368s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 368s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 368s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 368s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 368s x11-common xdg-utils zip zlib1g-dev 368s Suggested packages: 368s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 368s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 368s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 368s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 368s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 368s libboost-context1.83-dev libboost-contract1.83-dev 368s libboost-coroutine1.83-dev libboost-date-time1.83-dev 368s libboost-exception1.83-dev libboost-fiber1.83-dev 368s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 368s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 368s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 368s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 368s libboost-numpy1.83-dev libboost-program-options1.83-dev 368s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 368s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 368s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 368s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 368s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 368s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 368s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 368s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 368s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 368s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 368s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 368s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 368s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-cran-princurve 368s r-bioc-all r-bioc-affy r-bioc-annotate r-cran-foreach r-cran-bbmisc 368s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 368s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 368s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 368s r-cran-pheatmap r-bioc-tximport r-bioc-tximeta r-bioc-tximportdata 368s r-cran-readr r-cran-pbapply r-bioc-glmgampoi r-bioc-rhdf5 368s r-cran-seuratobject r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown 368s r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-cran-biasedurn 368s r-cran-ellipse r-cran-gplots r-bioc-sparsematrixstats r-cran-roxygen2 368s r-cran-ff r-cran-covr r-cran-spelling r-cran-kernlab r-cran-mvtnorm 368s r-cran-vcd r-cran-shinyjs r-cran-viridis r-cran-rstudioapi r-cran-rmysql 368s r-cran-polyclip r-cran-lubridate r-cran-sp r-cran-gridextra 368s r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-getopt r-cran-gam 368s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival 368s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 368s r-cran-bench r-cran-here r-cran-plm r-cran-zoo debhelper ghostscript gv 368s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 368s hintview texlive-latex-base-doc wp2latex 368s Recommended packages: 368s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 368s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 368s r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect 368s r-cran-testit r-cran-tufte r-cran-webshot r-cran-covr r-cran-thematic 368s r-cran-cliapp r-cran-mockery r-cran-whoami r-cran-bench r-cran-decor 368s r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-rpostgresql r-cran-gh 368s r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-survival 368s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 368s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 368s r-cran-svglite r-cran-vdiffr r-cran-cairo r-cran-markdown r-cran-readr 368s r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 368s r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 368s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr 368s r-cran-webfakes r-cran-future r-cran-pingr r-cran-runit r-cran-usethis 368s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-rvest r-cran-dichromat 368s r-cran-data.table r-cran-formattable r-cran-pkgdown r-cran-zeallot 368s r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl 368s libx11-protocol-perl x11-utils x11-xserver-utils 368s The following NEW packages will be installed: 368s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 368s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 368s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 368s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 368s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 368s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 368s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 368s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 368s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 368s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 368s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 368s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 368s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 368s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 368s libjs-highlight.js libjs-jquery libjs-jquery-datatables 368s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 368s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 368s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 368s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 368s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 368s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 368s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 368s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 368s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 368s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 368s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 368s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 368s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 368s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 368s r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase r-bioc-biocfilecache 368s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 368s r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 368s r-bioc-edaseq r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 368s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 368s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 368s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 368s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 368s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 368s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 368s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 368s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 368s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 368s r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-diffobj 368s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 368s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 368s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 368s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 368s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-hwriter 368s r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 368s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 368s r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler 368s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 368s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 368s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 368s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 368s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 368s r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 368s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 368s r-cran-rcppeigen r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 368s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass 368s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod 368s r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble 368s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 368s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 368s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 368s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 368s x11-common xdg-utils zip zlib1g-dev 368s 0 upgraded, 320 newly installed, 0 to remove and 0 not upgraded. 368s Need to get 456 MB/456 MB of archives. 368s After this operation, 1404 MB of additional disk space will be used. 368s Get:1 /tmp/autopkgtest.yjdeIC/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [780 B] 368s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 368s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 369s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 369s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 369s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 369s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 369s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 369s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 369s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 369s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 369s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 369s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 369s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 369s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 369s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 369s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 369s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 369s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 369s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 369s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 369s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 369s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 369s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 369s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 370s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 370s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 370s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 370s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 370s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 370s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 370s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 370s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 370s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 370s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 370s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 370s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 370s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 370s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 370s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 370s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 370s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 370s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 371s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 371s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 371s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 371s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 371s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 371s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 371s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 371s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 371s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 371s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 371s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 371s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 371s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 371s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 371s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 371s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 371s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 371s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 371s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 371s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 371s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 371s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 371s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 371s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 371s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 371s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 371s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 371s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 371s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 372s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 372s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 372s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 372s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 372s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 372s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 372s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 372s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 372s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 372s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 372s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 372s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 372s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 372s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 372s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 372s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 372s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 372s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 372s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 372s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 372s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 372s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 372s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 372s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 372s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 372s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 372s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 372s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 372s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 372s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 372s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 372s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 372s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 372s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 372s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 372s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 372s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 373s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 373s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 373s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 373s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 373s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 373s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 373s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 373s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 373s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 373s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 373s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 373s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 373s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 373s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 373s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 373s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 373s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 373s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 373s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 373s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 373s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 373s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 373s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 373s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 373s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 373s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 373s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 373s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 373s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 373s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 373s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 373s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 373s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 373s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 373s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 374s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 374s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 374s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 374s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 374s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 374s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 374s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 374s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 374s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 374s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 374s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 374s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 374s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 374s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 374s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 374s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 374s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 374s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 374s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 374s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 374s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 374s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 374s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 374s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 374s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 375s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 375s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 375s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 375s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 375s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 375s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 375s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 375s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 375s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 375s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 375s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 375s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 375s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 375s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 375s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 375s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 375s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 375s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 375s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 375s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 375s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 375s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 375s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 375s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 375s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-aroma.light all 3.32.0-1 [576 kB] 375s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 375s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 375s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 376s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 376s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 376s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 376s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 376s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 376s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 376s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 376s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 376s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 376s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 376s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 376s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 376s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 376s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 376s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 376s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 376s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 376s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 376s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 376s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 376s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 376s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 376s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 376s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 376s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 376s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 376s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 376s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 376s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 376s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 377s Get:228 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 377s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 377s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 377s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 377s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 377s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 377s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 377s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 377s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 377s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 377s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 377s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 377s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 377s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 377s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 377s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 377s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 377s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 377s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 377s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 377s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 377s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 377s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 377s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 377s Get:252 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 377s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 378s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 378s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 378s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 381s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 381s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 381s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 381s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 381s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 381s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 381s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 381s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 381s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 381s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 381s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 381s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 381s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 381s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 381s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 381s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 382s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 382s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 382s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 382s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 382s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 382s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 382s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 382s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 382s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 382s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 382s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 382s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 382s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 382s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 382s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 382s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq2 arm64 1.42.0+dfsg-1 [1218 kB] 382s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 382s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 382s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 382s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 382s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 382s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 382s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 382s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 382s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 383s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB] 383s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 383s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 383s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 383s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 383s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edaseq all 2.36.0+dfsg-1 [384 kB] 383s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 383s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 384s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 384s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 384s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 384s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 384s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 384s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 384s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 384s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 384s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 384s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 384s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 384s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 384s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 384s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 384s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 385s Preconfiguring packages ... 386s Fetched 456 MB in 16s (28.8 MB/s) 386s Selecting previously unselected package libc-dev-bin. 386s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74316 files and directories currently installed.) 386s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 386s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 386s Selecting previously unselected package linux-libc-dev:arm64. 386s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 386s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 386s Selecting previously unselected package libcrypt-dev:arm64. 386s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 386s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 386s Selecting previously unselected package libtirpc-dev:arm64. 386s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 386s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 386s Selecting previously unselected package libnsl-dev:arm64. 386s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 386s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 386s Selecting previously unselected package rpcsvc-proto. 386s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 386s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 386s Selecting previously unselected package libc6-dev:arm64. 386s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 386s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 387s Selecting previously unselected package libisl23:arm64. 387s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 387s Unpacking libisl23:arm64 (0.26-3) ... 387s Selecting previously unselected package libmpc3:arm64. 387s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 387s Unpacking libmpc3:arm64 (1.3.1-1) ... 387s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 387s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 387s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 387s Selecting previously unselected package cpp-13. 387s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 387s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 387s Selecting previously unselected package cpp-aarch64-linux-gnu. 387s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 387s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 387s Selecting previously unselected package cpp. 387s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 387s Unpacking cpp (4:13.2.0-7ubuntu1) ... 387s Selecting previously unselected package libcc1-0:arm64. 387s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 387s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 387s Selecting previously unselected package libgomp1:arm64. 388s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 388s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 388s Selecting previously unselected package libitm1:arm64. 388s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 388s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 388s Selecting previously unselected package libatomic1:arm64. 388s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 388s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 388s Selecting previously unselected package libasan8:arm64. 388s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 388s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 388s Selecting previously unselected package liblsan0:arm64. 388s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 388s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 388s Selecting previously unselected package libtsan2:arm64. 388s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 388s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 388s Selecting previously unselected package libubsan1:arm64. 388s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 388s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 388s Selecting previously unselected package libhwasan0:arm64. 388s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 388s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 388s Selecting previously unselected package libgcc-13-dev:arm64. 388s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 388s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 389s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 389s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 389s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 389s Selecting previously unselected package gcc-13. 389s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 389s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 389s Selecting previously unselected package gcc-aarch64-linux-gnu. 389s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 389s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 389s Selecting previously unselected package gcc. 389s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 389s Unpacking gcc (4:13.2.0-7ubuntu1) ... 389s Selecting previously unselected package libstdc++-13-dev:arm64. 390s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 390s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 390s Selecting previously unselected package g++-13-aarch64-linux-gnu. 390s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 390s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 390s Selecting previously unselected package g++-13. 390s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 390s Unpacking g++-13 (13.2.0-17ubuntu2) ... 390s Selecting previously unselected package g++-aarch64-linux-gnu. 390s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 390s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 390s Selecting previously unselected package g++. 391s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 391s Unpacking g++ (4:13.2.0-7ubuntu1) ... 391s Selecting previously unselected package build-essential. 391s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 391s Unpacking build-essential (12.10ubuntu1) ... 391s Selecting previously unselected package dctrl-tools. 391s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 391s Unpacking dctrl-tools (2.24-3build2) ... 391s Selecting previously unselected package fonts-dejavu-mono. 391s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 391s Unpacking fonts-dejavu-mono (2.37-8) ... 391s Selecting previously unselected package fonts-dejavu-core. 391s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 391s Unpacking fonts-dejavu-core (2.37-8) ... 391s Selecting previously unselected package fontconfig-config. 391s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 391s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 391s Selecting previously unselected package libfontconfig1:arm64. 392s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 392s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 392s Selecting previously unselected package fontconfig. 392s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 392s Unpacking fontconfig (2.15.0-1ubuntu1) ... 392s Selecting previously unselected package fonts-font-awesome. 392s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 392s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 392s Selecting previously unselected package fonts-glyphicons-halflings. 392s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 392s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 392s Selecting previously unselected package fonts-lmodern. 392s Preparing to unpack .../041-fonts-lmodern_2.005-1_all.deb ... 392s Unpacking fonts-lmodern (2.005-1) ... 392s Selecting previously unselected package fonts-mathjax. 392s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 392s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 393s Selecting previously unselected package libgfortran5:arm64. 393s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 393s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 393s Selecting previously unselected package libgfortran-13-dev:arm64. 393s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 393s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 393s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 393s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 393s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 394s Selecting previously unselected package gfortran-13. 394s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 394s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 394s Selecting previously unselected package gfortran-aarch64-linux-gnu. 394s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 394s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 394s Selecting previously unselected package gfortran. 395s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 395s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 395s Selecting previously unselected package icu-devtools. 395s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_arm64.deb ... 395s Unpacking icu-devtools (74.2-1ubuntu1) ... 395s Selecting previously unselected package javascript-common. 395s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 395s Unpacking javascript-common (11+nmu1) ... 395s Selecting previously unselected package libio-string-perl. 396s Preparing to unpack .../051-libio-string-perl_1.08-4_all.deb ... 396s Unpacking libio-string-perl (1.08-4) ... 396s Selecting previously unselected package liblatex-tounicode-perl. 396s Preparing to unpack .../052-liblatex-tounicode-perl_0.54-2_all.deb ... 396s Unpacking liblatex-tounicode-perl (0.54-2) ... 396s Selecting previously unselected package libbibtex-parser-perl. 396s Preparing to unpack .../053-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 396s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 396s Selecting previously unselected package libblas3:arm64. 396s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 396s Unpacking libblas3:arm64 (3.12.0-3) ... 396s Selecting previously unselected package libblas-dev:arm64. 396s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 396s Unpacking libblas-dev:arm64 (3.12.0-3) ... 396s Selecting previously unselected package libboost1.83-dev:arm64. 396s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 396s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 399s Selecting previously unselected package libboost-dev:arm64. 399s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 399s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 399s Selecting previously unselected package libbz2-dev:arm64. 399s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 399s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 399s Selecting previously unselected package libpixman-1-0:arm64. 399s Preparing to unpack .../059-libpixman-1-0_0.42.2-1_arm64.deb ... 399s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 399s Selecting previously unselected package libxcb-render0:arm64. 399s Preparing to unpack .../060-libxcb-render0_1.15-1_arm64.deb ... 399s Unpacking libxcb-render0:arm64 (1.15-1) ... 399s Selecting previously unselected package libxcb-shm0:arm64. 400s Preparing to unpack .../061-libxcb-shm0_1.15-1_arm64.deb ... 400s Unpacking libxcb-shm0:arm64 (1.15-1) ... 400s Selecting previously unselected package libxrender1:arm64. 400s Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 400s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 400s Selecting previously unselected package libcairo2:arm64. 400s Preparing to unpack .../063-libcairo2_1.18.0-1_arm64.deb ... 400s Unpacking libcairo2:arm64 (1.18.0-1) ... 400s Selecting previously unselected package libdatrie1:arm64. 400s Preparing to unpack .../064-libdatrie1_0.2.13-3_arm64.deb ... 400s Unpacking libdatrie1:arm64 (0.2.13-3) ... 400s Selecting previously unselected package libdeflate0:arm64. 400s Preparing to unpack .../065-libdeflate0_1.19-1_arm64.deb ... 400s Unpacking libdeflate0:arm64 (1.19-1) ... 400s Selecting previously unselected package libgraphite2-3:arm64. 400s Preparing to unpack .../066-libgraphite2-3_1.3.14-2_arm64.deb ... 400s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 400s Selecting previously unselected package libharfbuzz0b:arm64. 400s Preparing to unpack .../067-libharfbuzz0b_8.3.0-2_arm64.deb ... 400s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 400s Selecting previously unselected package x11-common. 400s Preparing to unpack .../068-x11-common_1%3a7.7+23ubuntu2_all.deb ... 400s Unpacking x11-common (1:7.7+23ubuntu2) ... 400s Selecting previously unselected package libice6:arm64. 401s Preparing to unpack .../069-libice6_2%3a1.0.10-1build2_arm64.deb ... 401s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 401s Selecting previously unselected package libicu-dev:arm64. 401s Preparing to unpack .../070-libicu-dev_74.2-1ubuntu1_arm64.deb ... 401s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 401s Selecting previously unselected package libjpeg-turbo8:arm64. 401s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 401s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 401s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 401s Preparing to unpack .../072-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 401s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 401s Selecting previously unselected package libjpeg8:arm64. 401s Preparing to unpack .../073-libjpeg8_8c-2ubuntu11_arm64.deb ... 401s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 402s Selecting previously unselected package libjpeg8-dev:arm64. 402s Preparing to unpack .../074-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 402s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 402s Selecting previously unselected package libjpeg-dev:arm64. 402s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 402s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 402s Selecting previously unselected package libjs-bootstrap. 402s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 402s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 402s Selecting previously unselected package libjs-popper.js. 402s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 402s Unpacking libjs-popper.js (1.16.1+ds-6) ... 402s Selecting previously unselected package libjs-bootstrap4. 402s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 402s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 402s Selecting previously unselected package libjs-d3. 402s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 402s Unpacking libjs-d3 (3.5.17-4) ... 402s Selecting previously unselected package libjs-es5-shim. 402s Preparing to unpack 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Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 405s Selecting previously unselected package libtcl8.6:arm64. 405s Preparing to unpack .../117-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 405s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 405s Selecting previously unselected package libteckit0:arm64. 405s Preparing to unpack .../118-libteckit0_2.5.12+ds1-1_arm64.deb ... 405s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 405s Selecting previously unselected package libtexlua53-5:arm64. 406s Preparing to unpack .../119-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 406s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 406s Selecting previously unselected package libjbig0:arm64. 406s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 406s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 406s Selecting previously unselected package libwebp7:arm64. 406s Preparing to unpack .../121-libwebp7_1.3.2-0.4_arm64.deb ... 406s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 406s Selecting previously unselected package libtiff6:arm64. 406s Preparing to unpack .../122-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 406s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 406s Selecting previously unselected package libxft2:arm64. 406s Preparing to unpack .../123-libxft2_2.3.6-1_arm64.deb ... 406s Unpacking libxft2:arm64 (2.3.6-1) ... 406s Selecting previously unselected package libxss1:arm64. 406s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build2_arm64.deb ... 406s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 406s Selecting previously unselected package libtk8.6:arm64. 406s Preparing to unpack .../125-libtk8.6_8.6.13-2_arm64.deb ... 406s Unpacking libtk8.6:arm64 (8.6.13-2) ... 406s Selecting previously unselected package libxt6:arm64. 406s Preparing to unpack .../126-libxt6_1%3a1.2.1-1.1_arm64.deb ... 406s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 406s Selecting previously unselected package libxmu6:arm64. 406s Preparing to unpack .../127-libxmu6_2%3a1.1.3-3_arm64.deb ... 406s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 406s Selecting previously unselected package libxpm4:arm64. 406s Preparing to unpack .../128-libxpm4_1%3a3.5.17-1_arm64.deb ... 406s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 406s Selecting previously unselected package libxaw7:arm64. 406s Preparing to unpack .../129-libxaw7_2%3a1.0.14-1_arm64.deb ... 406s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 406s Selecting previously unselected package libxi6:arm64. 406s Preparing to unpack .../130-libxi6_2%3a1.8.1-1_arm64.deb ... 406s Unpacking libxi6:arm64 (2:1.8.1-1) ... 406s Selecting previously unselected package libzzip-0-13:arm64. 406s Preparing to unpack .../131-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 406s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 406s Selecting previously unselected package zip. 406s Preparing to unpack .../132-zip_3.0-13_arm64.deb ... 406s Unpacking zip (3.0-13) ... 406s Selecting previously unselected package unzip. 406s Preparing to unpack .../133-unzip_6.0-28ubuntu3_arm64.deb ... 406s Unpacking unzip (6.0-28ubuntu3) ... 407s Selecting previously unselected package xdg-utils. 407s Preparing to unpack .../134-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 407s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 407s Selecting previously unselected package r-base-core. 407s Preparing to unpack .../135-r-base-core_4.3.2-1build1_arm64.deb ... 407s Unpacking r-base-core (4.3.2-1build1) ... 407s Selecting previously unselected package r-cran-littler. 407s Preparing to unpack .../136-r-cran-littler_0.3.19-1_arm64.deb ... 407s Unpacking r-cran-littler (0.3.19-1) ... 407s Selecting previously unselected package littler. 407s Preparing to unpack .../137-littler_0.3.19-1_all.deb ... 407s Unpacking littler (0.3.19-1) ... 407s Selecting previously unselected package node-bootstrap-sass. 407s Preparing to unpack .../138-node-bootstrap-sass_3.4.3-2_all.deb ... 407s Unpacking node-bootstrap-sass (3.4.3-2) ... 407s Selecting previously unselected package node-html5shiv. 407s Preparing to unpack .../139-node-html5shiv_3.7.3+dfsg-5_all.deb ... 407s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 407s Selecting previously unselected package node-normalize.css. 407s Preparing to unpack .../140-node-normalize.css_8.0.1-5_all.deb ... 407s Unpacking node-normalize.css (8.0.1-5) ... 408s Selecting previously unselected package pandoc-data. 408s Preparing to unpack .../141-pandoc-data_3.1.3-1_all.deb ... 408s Unpacking pandoc-data (3.1.3-1) ... 408s Selecting previously unselected package pandoc. 408s Preparing to unpack .../142-pandoc_3.1.3+ds-2_arm64.deb ... 408s Unpacking pandoc (3.1.3+ds-2) ... 409s Selecting previously unselected package pkgconf-bin. 410s Preparing to unpack .../143-pkgconf-bin_1.8.1-2_arm64.deb ... 410s Unpacking pkgconf-bin (1.8.1-2) ... 410s Selecting previously unselected package pkgconf:arm64. 410s Preparing to unpack .../144-pkgconf_1.8.1-2_arm64.deb ... 410s Unpacking pkgconf:arm64 (1.8.1-2) ... 410s Selecting previously unselected package pkg-config:arm64. 410s Preparing to unpack .../145-pkg-config_1.8.1-2_arm64.deb ... 410s Unpacking pkg-config:arm64 (1.8.1-2) ... 410s Selecting previously unselected package liblzma-dev:arm64. 410s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 410s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 410s Selecting previously unselected package r-base-dev. 410s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ... 410s Unpacking r-base-dev (4.3.2-1build1) ... 410s Selecting previously unselected package pkg-r-autopkgtest. 410s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 410s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 410s Selecting previously unselected package r-bioc-biocgenerics. 410s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 410s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 410s Selecting previously unselected package r-bioc-biobase. 410s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 410s Unpacking r-bioc-biobase (2.62.0-1) ... 410s Selecting previously unselected package r-bioc-s4vectors. 410s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 410s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 410s Selecting previously unselected package r-bioc-iranges. 410s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 410s Unpacking r-bioc-iranges (2.36.0-1) ... 410s Selecting previously unselected package r-cran-dbi. 411s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 411s Unpacking r-cran-dbi (1.2.2-1) ... 411s Selecting previously unselected package r-cran-bit. 411s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 411s Unpacking r-cran-bit (4.0.5-1) ... 411s Selecting previously unselected package r-cran-bit64. 411s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 411s Unpacking r-cran-bit64 (4.0.5-1) ... 411s Selecting previously unselected package r-cran-rlang. 411s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 411s Unpacking r-cran-rlang (1.1.3-1) ... 411s Selecting previously unselected package r-cran-cli. 411s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 411s Unpacking r-cran-cli (3.6.2-1) ... 411s Selecting previously unselected package r-cran-glue. 411s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 411s Unpacking r-cran-glue (1.7.0-1) ... 411s Selecting previously unselected package r-cran-lifecycle. 411s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 411s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 411s Selecting previously unselected package r-cran-vctrs. 411s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 411s Unpacking r-cran-vctrs (0.6.5-1) ... 411s Selecting previously unselected package r-cran-blob. 411s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 411s Unpacking r-cran-blob (1.2.4-1) ... 411s Selecting previously unselected package r-cran-fastmap. 412s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 412s Unpacking r-cran-fastmap (1.1.1-1) ... 412s Selecting previously unselected package r-cran-cachem. 412s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 412s Unpacking r-cran-cachem (1.0.8-1) ... 412s Selecting previously unselected package r-cran-memoise. 412s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 412s Unpacking r-cran-memoise (2.0.1-1) ... 412s Selecting previously unselected package r-cran-pkgconfig. 412s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 412s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 412s Selecting previously unselected package r-cran-plogr. 413s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 413s Unpacking r-cran-plogr (0.2.0-3build1) ... 413s Selecting previously unselected package r-cran-cpp11. 413s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 413s Unpacking r-cran-cpp11 (0.4.7-1) ... 413s Selecting previously unselected package r-cran-rsqlite. 413s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 413s Unpacking r-cran-rsqlite (2.3.4-1) ... 413s Selecting previously unselected package r-cran-curl. 413s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 413s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 413s Selecting previously unselected package r-cran-jsonlite. 413s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 413s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 413s Selecting previously unselected package r-cran-mime. 413s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 413s Unpacking r-cran-mime (0.12-1) ... 413s Selecting previously unselected package r-cran-sys. 413s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 413s Unpacking r-cran-sys (3.4.2-1) ... 413s Selecting previously unselected package r-cran-askpass. 413s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 413s Unpacking r-cran-askpass (1.2.0-1) ... 413s Selecting previously unselected package r-cran-openssl. 413s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 413s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 413s Selecting previously unselected package r-cran-r6. 413s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 413s Unpacking r-cran-r6 (2.5.1-1) ... 413s Selecting previously unselected package r-cran-httr. 413s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 413s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 413s Selecting previously unselected package r-cran-png. 413s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 413s Unpacking r-cran-png (0.1-8-1) ... 413s Selecting previously unselected package r-bioc-zlibbioc. 413s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 413s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 413s Selecting previously unselected package r-bioc-xvector. 414s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 414s Unpacking r-bioc-xvector (0.42.0-1) ... 414s Selecting previously unselected package r-cran-bitops. 414s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 414s Unpacking r-cran-bitops (1.0-7-1) ... 414s Selecting previously unselected package r-cran-rcurl. 414s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 414s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 414s Selecting previously unselected package r-bioc-genomeinfodbdata. 414s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 414s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 414s Selecting previously unselected package r-bioc-genomeinfodb. 414s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 414s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 414s Selecting previously unselected package r-cran-crayon. 414s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 414s Unpacking r-cran-crayon (1.5.2-1) ... 414s Selecting previously unselected package r-bioc-biostrings. 414s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 414s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 414s Selecting previously unselected package r-bioc-keggrest. 414s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 414s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 414s Selecting previously unselected package r-bioc-annotationdbi. 414s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 414s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 414s Selecting previously unselected package r-cran-r.methodss3. 414s Preparing to unpack .../188-r-cran-r.methodss3_1.8.2-1_all.deb ... 414s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 414s Selecting previously unselected package r-cran-r.oo. 414s Preparing to unpack .../189-r-cran-r.oo_1.26.0-1_all.deb ... 414s Unpacking r-cran-r.oo (1.26.0-1) ... 414s Selecting previously unselected package r-cran-r.utils. 414s Preparing to unpack .../190-r-cran-r.utils_2.12.3-1_all.deb ... 414s Unpacking r-cran-r.utils (2.12.3-1) ... 414s Selecting previously unselected package r-cran-matrixstats. 414s Preparing to unpack .../191-r-cran-matrixstats_1.2.0-1_arm64.deb ... 414s Unpacking r-cran-matrixstats (1.2.0-1) ... 415s Selecting previously unselected package r-bioc-aroma.light. 415s Preparing to unpack .../192-r-bioc-aroma.light_3.32.0-1_all.deb ... 415s Unpacking r-bioc-aroma.light (3.32.0-1) ... 415s Selecting previously unselected package r-cran-generics. 415s Preparing to unpack .../193-r-cran-generics_0.1.3-1_all.deb ... 415s Unpacking r-cran-generics (0.1.3-1) ... 415s Selecting previously unselected package r-cran-magrittr. 415s Preparing to unpack .../194-r-cran-magrittr_2.0.3-1_arm64.deb ... 415s Unpacking r-cran-magrittr (2.0.3-1) ... 415s Selecting previously unselected package r-cran-fansi. 415s Preparing to unpack .../195-r-cran-fansi_1.0.5-1_arm64.deb ... 415s Unpacking r-cran-fansi (1.0.5-1) ... 415s Selecting previously unselected package r-cran-utf8. 415s Preparing to unpack .../196-r-cran-utf8_1.2.4-1_arm64.deb ... 415s Unpacking r-cran-utf8 (1.2.4-1) ... 415s Selecting previously unselected package r-cran-pillar. 415s Preparing to unpack .../197-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 415s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 415s Selecting previously unselected package r-cran-tibble. 415s Preparing to unpack .../198-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 415s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 415s Selecting previously unselected package r-cran-withr. 415s Preparing to unpack .../199-r-cran-withr_2.5.0-1_all.deb ... 415s Unpacking r-cran-withr (2.5.0-1) ... 415s Selecting previously unselected package r-cran-tidyselect. 415s Preparing to unpack .../200-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 415s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 415s Selecting previously unselected package r-cran-dplyr. 415s Preparing to unpack .../201-r-cran-dplyr_1.1.4-1_arm64.deb ... 415s Unpacking r-cran-dplyr (1.1.4-1) ... 415s Selecting previously unselected package r-cran-purrr. 415s Preparing to unpack .../202-r-cran-purrr_1.0.2-1_arm64.deb ... 415s Unpacking r-cran-purrr (1.0.2-1) ... 415s Selecting previously unselected package r-cran-stringi. 415s Preparing to unpack .../203-r-cran-stringi_1.8.3-1_arm64.deb ... 415s Unpacking r-cran-stringi (1.8.3-1) ... 415s Selecting previously unselected package r-cran-stringr. 416s Preparing to unpack .../204-r-cran-stringr_1.5.1-1_all.deb ... 416s Unpacking r-cran-stringr (1.5.1-1) ... 416s Selecting previously unselected package r-cran-tidyr. 416s Preparing to unpack .../205-r-cran-tidyr_1.3.1-1_arm64.deb ... 416s Unpacking r-cran-tidyr (1.3.1-1) ... 416s Selecting previously unselected package r-cran-dbplyr. 416s Preparing to unpack .../206-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 416s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 416s Selecting previously unselected package r-cran-filelock. 416s Preparing to unpack .../207-r-cran-filelock_1.0.3-1_arm64.deb ... 416s Unpacking r-cran-filelock (1.0.3-1) ... 416s Selecting previously unselected package r-bioc-biocfilecache. 416s Preparing to unpack .../208-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 416s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 416s Selecting previously unselected package r-bioc-biocio. 416s Preparing to unpack .../209-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 416s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 416s Selecting previously unselected package r-cran-formatr. 416s Preparing to unpack .../210-r-cran-formatr_1.14-1_all.deb ... 416s Unpacking r-cran-formatr (1.14-1) ... 416s Selecting previously unselected package r-cran-lambda.r. 416s Preparing to unpack .../211-r-cran-lambda.r_1.2.4-2build1_all.deb ... 416s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 416s Selecting previously unselected package r-cran-futile.options. 416s Preparing to unpack .../212-r-cran-futile.options_1.0.1-3build1_all.deb ... 416s Unpacking r-cran-futile.options (1.0.1-3build1) ... 416s Selecting previously unselected package r-cran-futile.logger. 416s Preparing to unpack .../213-r-cran-futile.logger_1.4.3-4build1_all.deb ... 416s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 416s Selecting previously unselected package r-cran-snow. 416s Preparing to unpack .../214-r-cran-snow_1%3a0.4.4-2_all.deb ... 416s Unpacking r-cran-snow (1:0.4.4-2) ... 416s Selecting previously unselected package r-cran-codetools. 416s Preparing to unpack .../215-r-cran-codetools_0.2-19-1_all.deb ... 416s Unpacking r-cran-codetools (0.2-19-1) ... 416s Selecting previously unselected package r-cran-bh. 416s Preparing to unpack .../216-r-cran-bh_1.84.0-1_all.deb ... 416s Unpacking r-cran-bh (1.84.0-1) ... 416s Selecting previously unselected package r-bioc-biocparallel. 416s Preparing to unpack .../217-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 416s Unpacking r-bioc-biocparallel (1.36.0-1) ... 416s Selecting previously unselected package r-cran-base64enc. 416s Preparing to unpack .../218-r-cran-base64enc_0.1-3-3_arm64.deb ... 416s Unpacking r-cran-base64enc (0.1-3-3) ... 416s Selecting previously unselected package r-cran-digest. 416s Preparing to unpack .../219-r-cran-digest_0.6.34-1_arm64.deb ... 416s Unpacking r-cran-digest (0.6.34-1) ... 416s Selecting previously unselected package r-cran-ellipsis. 416s Preparing to unpack .../220-r-cran-ellipsis_0.3.2-2_arm64.deb ... 416s Unpacking r-cran-ellipsis (0.3.2-2) ... 416s Selecting previously unselected package r-cran-htmltools. 416s Preparing to unpack .../221-r-cran-htmltools_0.5.7-1_arm64.deb ... 416s Unpacking r-cran-htmltools (0.5.7-1) ... 416s Selecting previously unselected package r-cran-evaluate. 417s Preparing to unpack .../222-r-cran-evaluate_0.23-1_all.deb ... 417s Unpacking r-cran-evaluate (0.23-1) ... 417s Selecting previously unselected package r-cran-xfun. 417s Preparing to unpack .../223-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 417s Unpacking r-cran-xfun (0.41+dfsg-1) ... 417s Selecting previously unselected package r-cran-highr. 417s Preparing to unpack .../224-r-cran-highr_0.10+dfsg-1_all.deb ... 417s Unpacking r-cran-highr (0.10+dfsg-1) ... 417s Selecting previously unselected package r-cran-yaml. 417s Preparing to unpack .../225-r-cran-yaml_2.3.8-1_arm64.deb ... 417s Unpacking r-cran-yaml (2.3.8-1) ... 417s Selecting previously unselected package libjs-mathjax. 417s Preparing to unpack .../226-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 417s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 417s Selecting previously unselected package r-cran-knitr. 417s Preparing to unpack .../227-r-cran-knitr_1.45+dfsg-1_all.deb ... 417s Unpacking r-cran-knitr (1.45+dfsg-1) ... 417s Selecting previously unselected package r-cran-jquerylib. 417s Preparing to unpack .../228-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 417s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 417s Selecting previously unselected package r-cran-fs. 418s Preparing to unpack .../229-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 418s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 418s Selecting previously unselected package r-cran-rappdirs. 418s Preparing to unpack .../230-r-cran-rappdirs_0.3.3-1_arm64.deb ... 418s Unpacking r-cran-rappdirs (0.3.3-1) ... 418s Selecting previously unselected package r-cran-sass. 418s Preparing to unpack .../231-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 418s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 418s Selecting previously unselected package r-cran-bslib. 418s Preparing to unpack .../232-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 418s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 418s Selecting previously unselected package r-cran-fontawesome. 418s Preparing to unpack .../233-r-cran-fontawesome_0.5.2-1_all.deb ... 418s Unpacking r-cran-fontawesome (0.5.2-1) ... 419s Selecting previously unselected package r-cran-tinytex. 419s Preparing to unpack .../234-r-cran-tinytex_0.49-1_all.deb ... 419s Unpacking r-cran-tinytex (0.49-1) ... 419s Selecting previously unselected package libjs-modernizr. 419s Preparing to unpack .../235-libjs-modernizr_2.6.2+ds1-5_all.deb ... 419s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 419s Selecting previously unselected package r-cran-pkgkitten. 419s Preparing to unpack .../236-r-cran-pkgkitten_0.2.3-1_all.deb ... 419s Unpacking r-cran-pkgkitten (0.2.3-1) ... 419s Selecting previously unselected package r-cran-rcpp. 419s Preparing to unpack .../237-r-cran-rcpp_1.0.12-1_arm64.deb ... 419s Unpacking r-cran-rcpp (1.0.12-1) ... 419s Selecting previously unselected package r-cran-later. 419s Preparing to unpack .../238-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 419s Unpacking r-cran-later (1.3.2+dfsg-1) ... 419s Selecting previously unselected package r-cran-promises. 419s Preparing to unpack .../239-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 419s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 419s Selecting previously unselected package r-cran-httpuv. 419s Preparing to unpack .../240-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 419s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 419s Selecting previously unselected package r-cran-xtable. 419s Preparing to unpack .../241-r-cran-xtable_1%3a1.8-4-2_all.deb ... 419s Unpacking r-cran-xtable (1:1.8-4-2) ... 419s Selecting previously unselected package r-cran-sourcetools. 419s Preparing to unpack .../242-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 419s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 419s Selecting previously unselected package r-cran-commonmark. 419s Preparing to unpack .../243-r-cran-commonmark_1.9.1-1_arm64.deb ... 419s Unpacking r-cran-commonmark (1.9.1-1) ... 419s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 419s Preparing to unpack .../244-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 419s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 419s Selecting previously unselected package r-cran-shiny. 420s Preparing to unpack .../245-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 420s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 420s Selecting previously unselected package r-cran-rmarkdown. 420s Preparing to unpack .../246-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 420s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 420s Selecting previously unselected package r-cran-bookdown. 420s Preparing to unpack .../247-r-cran-bookdown_0.37+dfsg-1_all.deb ... 420s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 420s Selecting previously unselected package r-cran-biocmanager. 420s Preparing to unpack .../248-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 420s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 420s Selecting previously unselected package tex-common. 420s Preparing to unpack .../249-tex-common_6.18_all.deb ... 420s Unpacking tex-common (6.18) ... 420s Selecting previously unselected package t1utils. 420s Preparing to unpack .../250-t1utils_1.41-4build2_arm64.deb ... 420s Unpacking t1utils (1.41-4build2) ... 420s Selecting previously unselected package texlive-binaries. 420s Preparing to unpack .../251-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 420s Unpacking texlive-binaries (2023.20230311.66589-9) ... 420s Selecting previously unselected package texlive-base. 420s Preparing to unpack .../252-texlive-base_2023.20240207-1_all.deb ... 420s Unpacking texlive-base (2023.20240207-1) ... 422s Selecting previously unselected package texlive-latex-base. 422s Preparing to unpack .../253-texlive-latex-base_2023.20240207-1_all.deb ... 422s Unpacking texlive-latex-base (2023.20240207-1) ... 422s Selecting previously unselected package texlive-bibtex-extra. 422s Preparing to unpack .../254-texlive-bibtex-extra_2023.20240207-1_all.deb ... 422s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 425s Selecting previously unselected package r-bioc-biocstyle. 425s Preparing to unpack .../255-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 425s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 425s Selecting previously unselected package r-cran-xml. 425s Preparing to unpack .../256-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 425s Unpacking r-cran-xml (3.99-0.16.1-1) ... 425s Selecting previously unselected package r-cran-hms. 425s Preparing to unpack .../257-r-cran-hms_1.1.3-1_all.deb ... 425s Unpacking r-cran-hms (1.1.3-1) ... 425s Selecting previously unselected package r-cran-prettyunits. 425s Preparing to unpack .../258-r-cran-prettyunits_1.2.0-1_all.deb ... 425s Unpacking r-cran-prettyunits (1.2.0-1) ... 425s Selecting previously unselected package r-cran-progress. 425s Preparing to unpack .../259-r-cran-progress_1.2.3-1_all.deb ... 425s Unpacking r-cran-progress (1.2.3-1) ... 425s Selecting previously unselected package r-cran-xml2. 426s Preparing to unpack .../260-r-cran-xml2_1.3.6-1_arm64.deb ... 426s Unpacking r-cran-xml2 (1.3.6-1) ... 426s Selecting previously unselected package r-bioc-biomart. 426s Preparing to unpack .../261-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 426s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 426s Selecting previously unselected package r-cran-lattice. 426s Preparing to unpack .../262-r-cran-lattice_0.22-5-1_arm64.deb ... 426s Unpacking r-cran-lattice (0.22-5-1) ... 426s Selecting previously unselected package r-cran-matrix. 426s Preparing to unpack .../263-r-cran-matrix_1.6-5-1_arm64.deb ... 426s Unpacking r-cran-matrix (1.6-5-1) ... 426s Selecting previously unselected package r-bioc-matrixgenerics. 427s Preparing to unpack .../264-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 427s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 427s Selecting previously unselected package r-cran-abind. 427s Preparing to unpack .../265-r-cran-abind_1.4-5-2_all.deb ... 427s Unpacking r-cran-abind (1.4-5-2) ... 427s Selecting previously unselected package r-bioc-s4arrays. 427s Preparing to unpack .../266-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 427s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 427s Selecting previously unselected package r-bioc-sparsearray. 427s Preparing to unpack .../267-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 427s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 427s Selecting previously unselected package r-bioc-delayedarray. 427s Preparing to unpack .../268-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 427s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 427s Selecting previously unselected package r-bioc-genomicranges. 428s Preparing to unpack .../269-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 428s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 428s Selecting previously unselected package r-bioc-summarizedexperiment. 428s Preparing to unpack .../270-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 428s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 428s Selecting previously unselected package r-cran-locfit. 428s Preparing to unpack .../271-r-cran-locfit_1.5-9.8-1_arm64.deb ... 428s Unpacking r-cran-locfit (1.5-9.8-1) ... 428s Selecting previously unselected package r-cran-gtable. 428s Preparing to unpack .../272-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 428s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 428s Selecting previously unselected package r-cran-isoband. 428s Preparing to unpack .../273-r-cran-isoband_0.2.7-1_arm64.deb ... 428s Unpacking r-cran-isoband (0.2.7-1) ... 428s Selecting previously unselected package r-cran-mass. 428s Preparing to unpack .../274-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 428s Unpacking r-cran-mass (7.3-60.0.1-1) ... 428s Selecting previously unselected package r-cran-nlme. 428s Preparing to unpack .../275-r-cran-nlme_3.1.164-1_arm64.deb ... 428s Unpacking r-cran-nlme (3.1.164-1) ... 428s Selecting previously unselected package r-cran-mgcv. 428s Preparing to unpack .../276-r-cran-mgcv_1.9-1-1_arm64.deb ... 428s Unpacking r-cran-mgcv (1.9-1-1) ... 428s Selecting previously unselected package r-cran-farver. 428s Preparing to unpack .../277-r-cran-farver_2.1.1-1_arm64.deb ... 428s Unpacking r-cran-farver (2.1.1-1) ... 429s Selecting previously unselected package r-cran-labeling. 429s Preparing to unpack .../278-r-cran-labeling_0.4.3-1_all.deb ... 429s Unpacking r-cran-labeling (0.4.3-1) ... 429s Selecting previously unselected package r-cran-colorspace. 429s Preparing to unpack .../279-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 429s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 429s Selecting previously unselected package r-cran-munsell. 429s Preparing to unpack .../280-r-cran-munsell_0.5.0-2build1_all.deb ... 429s Unpacking r-cran-munsell (0.5.0-2build1) ... 429s Selecting previously unselected package r-cran-rcolorbrewer. 429s Preparing to unpack .../281-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 429s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 429s Selecting previously unselected package r-cran-viridislite. 429s Preparing to unpack .../282-r-cran-viridislite_0.4.2-2_all.deb ... 429s Unpacking r-cran-viridislite (0.4.2-2) ... 429s Selecting previously unselected package r-cran-scales. 429s Preparing to unpack .../283-r-cran-scales_1.3.0-1_all.deb ... 429s Unpacking r-cran-scales (1.3.0-1) ... 429s Selecting previously unselected package r-cran-ggplot2. 429s Preparing to unpack .../284-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 429s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 429s Selecting previously unselected package r-cran-rcpparmadillo. 429s Preparing to unpack .../285-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ... 429s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 429s Selecting previously unselected package r-bioc-deseq2. 429s Preparing to unpack .../286-r-bioc-deseq2_1.42.0+dfsg-1_arm64.deb ... 429s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 429s Selecting previously unselected package r-bioc-rhtslib. 429s Preparing to unpack .../287-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 429s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 430s Selecting previously unselected package r-bioc-rsamtools. 430s Preparing to unpack .../288-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 430s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 430s Selecting previously unselected package r-bioc-genomicalignments. 430s Preparing to unpack .../289-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 430s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 430s Selecting previously unselected package r-cran-hwriter. 430s Preparing to unpack .../290-r-cran-hwriter_1.3.2.1-1_all.deb ... 430s Unpacking r-cran-hwriter (1.3.2.1-1) ... 430s Selecting previously unselected package r-cran-jpeg. 430s Preparing to unpack .../291-r-cran-jpeg_0.1-10-1_arm64.deb ... 430s Unpacking r-cran-jpeg (0.1-10-1) ... 430s Selecting previously unselected package r-cran-deldir. 430s Preparing to unpack .../292-r-cran-deldir_2.0-4-1_arm64.deb ... 430s Unpacking r-cran-deldir (2.0-4-1) ... 430s Selecting previously unselected package r-cran-rcppeigen. 430s Preparing to unpack .../293-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 430s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 430s Selecting previously unselected package r-cran-interp. 430s Preparing to unpack .../294-r-cran-interp_1.1-6-1_arm64.deb ... 430s Unpacking r-cran-interp (1.1-6-1) ... 430s Selecting previously unselected package r-cran-latticeextra. 430s Preparing to unpack .../295-r-cran-latticeextra_0.6-30-1_all.deb ... 430s Unpacking r-cran-latticeextra (0.6-30-1) ... 430s Selecting previously unselected package r-bioc-shortread. 430s Preparing to unpack .../296-r-bioc-shortread_1.60.0-2_arm64.deb ... 430s Unpacking r-bioc-shortread (1.60.0-2) ... 430s Selecting previously unselected package r-cran-rjson. 430s Preparing to unpack .../297-r-cran-rjson_0.2.21-1_arm64.deb ... 430s Unpacking r-cran-rjson (0.2.21-1) ... 430s Selecting previously unselected package r-cran-restfulr. 430s Preparing to unpack .../298-r-cran-restfulr_0.0.15-1_arm64.deb ... 430s Unpacking r-cran-restfulr (0.0.15-1) ... 430s Selecting previously unselected package r-bioc-rtracklayer. 430s Preparing to unpack .../299-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 430s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 430s Selecting previously unselected package r-bioc-genomicfeatures. 430s Preparing to unpack .../300-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 430s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 430s Selecting previously unselected package r-bioc-edaseq. 431s Preparing to unpack .../301-r-bioc-edaseq_2.36.0+dfsg-1_all.deb ... 431s Unpacking r-bioc-edaseq (2.36.0+dfsg-1) ... 431s Selecting previously unselected package r-cran-statmod. 431s Preparing to unpack .../302-r-cran-statmod_1.5.0-1_arm64.deb ... 431s Unpacking r-cran-statmod (1.5.0-1) ... 431s Selecting previously unselected package r-bioc-limma. 431s Preparing to unpack .../303-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 431s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 431s Selecting previously unselected package r-bioc-edger. 431s Preparing to unpack .../304-r-bioc-edger_4.0.16+dfsg-1_arm64.deb ... 431s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 431s Selecting previously unselected package r-cran-brio. 431s Preparing to unpack .../305-r-cran-brio_1.1.4-1_arm64.deb ... 431s Unpacking r-cran-brio (1.1.4-1) ... 431s Selecting previously unselected package r-cran-ps. 431s Preparing to unpack .../306-r-cran-ps_1.7.6-1_arm64.deb ... 431s Unpacking r-cran-ps (1.7.6-1) ... 431s Selecting previously unselected package r-cran-processx. 431s Preparing to unpack .../307-r-cran-processx_3.8.3-1_arm64.deb ... 431s Unpacking r-cran-processx (3.8.3-1) ... 431s Selecting previously unselected package r-cran-callr. 431s Preparing to unpack .../308-r-cran-callr_3.7.3-2_all.deb ... 431s Unpacking r-cran-callr (3.7.3-2) ... 431s Selecting previously unselected package r-cran-desc. 431s Preparing to unpack .../309-r-cran-desc_1.4.3-1_all.deb ... 431s Unpacking r-cran-desc (1.4.3-1) ... 431s Selecting previously unselected package r-cran-diffobj. 431s Preparing to unpack .../310-r-cran-diffobj_0.3.5-1_arm64.deb ... 431s Unpacking r-cran-diffobj (0.3.5-1) ... 431s Selecting previously unselected package r-cran-kernsmooth. 431s Preparing to unpack .../311-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 431s Unpacking r-cran-kernsmooth (2.23-22-1) ... 431s Selecting previously unselected package r-cran-pkgbuild. 431s Preparing to unpack .../312-r-cran-pkgbuild_1.4.3-1_all.deb ... 431s Unpacking r-cran-pkgbuild (1.4.3-1) ... 432s Selecting previously unselected package r-cran-rprojroot. 432s Preparing to unpack .../313-r-cran-rprojroot_2.0.4-1_all.deb ... 432s Unpacking r-cran-rprojroot (2.0.4-1) ... 432s Selecting previously unselected package r-cran-pkgload. 432s Preparing to unpack .../314-r-cran-pkgload_1.3.4-1_all.deb ... 432s Unpacking r-cran-pkgload (1.3.4-1) ... 432s Selecting previously unselected package r-cran-praise. 432s Preparing to unpack .../315-r-cran-praise_1.0.0-4build1_all.deb ... 432s Unpacking r-cran-praise (1.0.0-4build1) ... 432s Selecting previously unselected package r-cran-rematch2. 432s Preparing to unpack .../316-r-cran-rematch2_2.1.2-2build1_all.deb ... 432s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 432s Selecting previously unselected package r-cran-waldo. 432s Preparing to unpack .../317-r-cran-waldo_0.5.2-1build1_all.deb ... 432s Unpacking r-cran-waldo (0.5.2-1build1) ... 432s Selecting previously unselected package r-cran-testthat. 432s Preparing to unpack .../318-r-cran-testthat_3.2.1-1_arm64.deb ... 432s Unpacking r-cran-testthat (3.2.1-1) ... 432s Selecting previously unselected package autopkgtest-satdep. 432s Preparing to unpack .../319-1-autopkgtest-satdep.deb ... 432s Unpacking autopkgtest-satdep (0) ... 432s Setting up libjs-json (0~20221030+~1.0.8-1) ... 432s Setting up javascript-common (11+nmu1) ... 432s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 432s Setting up libpixman-1-0:arm64 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libdeflate0:arm64 (1.19-1) ... 434s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 434s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 434s Setting up libxcb-shm0:arm64 (1.15-1) ... 434s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 434s Setting up libpaper-utils (1.1.29) ... 434s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 434s Setting up libjs-modernizr (2.6.2+ds1-5) ... 434s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 434s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 434s Setting up libjs-es5-shim (4.6.7-2) ... 434s Setting up tex-common (6.18) ... 435s update-language: texlive-base not installed and configured, doing nothing! 435s Setting up libio-string-perl (1.08-4) ... 435s Setting up zip (3.0-13) ... 435s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 435s Setting up libblas3:arm64 (3.12.0-3) ... 435s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 435s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 435s Setting up libpkgconf3:arm64 (1.8.1-2) ... 435s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 435s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 435s Setting up t1utils (1.41-4build2) ... 435s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 435s Setting up libjs-d3 (3.5.17-4) ... 435s Setting up fonts-dejavu-mono (2.37-8) ... 435s Setting up libmpc3:arm64 (1.3.1-1) ... 435s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 435s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 435s Setting up icu-devtools (74.2-1ubuntu1) ... 435s Setting up fonts-dejavu-core (2.37-8) ... 435s Setting up pkgconf-bin (1.8.1-2) ... 435s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 435s Setting up libkpathsea6:arm64 (2023.20230311.66589-9) ... 435s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 435s Setting up libwebp7:arm64 (1.3.2-0.4) ... 435s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 435s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 435s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 435s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 435s Setting up libnsl-dev:arm64 (1.3.0-3) ... 435s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 435s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 435s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 435s Setting up fonts-lmodern (2.005-1) ... 435s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 435s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 435s Setting up libthai-data (0.1.29-2) ... 435s Setting up node-bootstrap-sass (3.4.3-2) ... 435s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 435s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 435s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 435s Setting up pandoc-data (3.1.3-1) ... 435s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 435s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 435s Setting up libisl23:arm64 (0.26-3) ... 435s Setting up libc-dev-bin (2.39-0ubuntu2) ... 435s Setting up node-normalize.css (8.0.1-5) ... 435s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 435s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 435s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 435s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 435s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 435s Setting up libblas-dev:arm64 (3.12.0-3) ... 435s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 435s Setting up dctrl-tools (2.24-3build2) ... 435s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 435s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 435s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 435s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 435s Setting up libpotrace0:arm64 (1.16-2) ... 435s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 435s Setting up libice6:arm64 (2:1.0.10-1build2) ... 435s Setting up liblapack3:arm64 (3.12.0-3) ... 435s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 435s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 435s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 435s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 435s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 435s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 435s Setting up pkgconf:arm64 (1.8.1-2) ... 435s Setting up libthai0:arm64 (0.1.29-2) ... 435s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 435s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 435s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 435s Setting up pandoc (3.1.3+ds-2) ... 435s Setting up liblapack-dev:arm64 (3.12.0-3) ... 435s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 435s Setting up pkg-config:arm64 (1.8.1-2) ... 435s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 435s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 435s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 435s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 435s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 435s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 435s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 435s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 435s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 435s Setting up fontconfig (2.15.0-1ubuntu1) ... 437s Regenerating fonts cache... done. 437s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 437s Setting up libxft2:arm64 (2.3.6-1) ... 437s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 437s 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... 440s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 440s Setting up r-bioc-edaseq (2.36.0+dfsg-1) ... 440s Setting up autopkgtest-satdep (0) ... 440s Processing triggers for man-db (2.12.0-3) ... 442s Processing triggers for install-info (7.1-3) ... 442s Processing triggers for libc-bin (2.39-0ubuntu2) ... 442s Processing triggers for tex-common (6.18) ... 442s Running updmap-sys. This may take some time... done. 442s Running mktexlsr /var/lib/texmf ... done. 443s Building format(s) --all. 481s This may take some time... done. 498s (Reading database ... 128582 files and directories currently installed.) 498s Removing autopkgtest-satdep (0) ... 499s autopkgtest [13:49:02]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 499s autopkgtest [13:49:02]: test pkg-r-autopkgtest: [----------------------- 499s Test: Try to load the R library EDASeq 500s 500s R version 4.3.2 (2023-10-31) -- "Eye Holes" 500s Copyright (C) 2023 The R Foundation for Statistical Computing 500s Platform: aarch64-unknown-linux-gnu (64-bit) 500s 500s R is free software and comes with ABSOLUTELY NO WARRANTY. 500s You are welcome to redistribute it under certain conditions. 500s Type 'license()' or 'licence()' for distribution details. 500s 500s R is a collaborative project with many contributors. 500s Type 'contributors()' for more information and 500s 'citation()' on how to cite R or R packages in publications. 500s 500s Type 'demo()' for some demos, 'help()' for on-line help, or 500s 'help.start()' for an HTML browser interface to help. 500s Type 'q()' to quit R. 500s 500s > library('EDASeq') 500s Loading required package: Biobase 500s Loading required package: BiocGenerics 500s 500s Attaching package: ‘BiocGenerics’ 500s 500s The following objects are masked from ‘package:stats’: 500s 500s IQR, mad, sd, var, xtabs 500s 500s The following objects are masked from ‘package:base’: 500s 500s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 500s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 500s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 500s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 500s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 500s table, tapply, union, unique, unsplit, which.max, which.min 500s 501s Welcome to Bioconductor 501s 501s Vignettes contain introductory material; view with 501s 'browseVignettes()'. To cite Bioconductor, see 501s 'citation("Biobase")', and for packages 'citation("pkgname")'. 501s 501s Loading required package: ShortRead 501s Loading required package: BiocParallel 501s Loading required package: Biostrings 501s Loading required package: S4Vectors 501s Loading required package: stats4 501s 501s Attaching package: ‘S4Vectors’ 501s 501s The following object is masked from ‘package:utils’: 501s 501s findMatches 501s 501s The following objects are masked from ‘package:base’: 501s 501s expand.grid, I, unname 501s 501s Loading required package: IRanges 502s Loading required package: XVector 502s Loading required package: GenomeInfoDb 503s 503s Attaching package: ‘Biostrings’ 503s 503s The following object is masked from ‘package:base’: 503s 503s strsplit 503s 503s Loading required package: Rsamtools 503s Loading required package: GenomicRanges 504s Loading required package: GenomicAlignments 504s Loading required package: SummarizedExperiment 504s Loading required package: MatrixGenerics 504s Loading required package: matrixStats 504s 504s Attaching package: ‘matrixStats’ 504s 504s The following objects are masked from ‘package:Biobase’: 504s 504s anyMissing, rowMedians 504s 504s 504s Attaching package: ‘MatrixGenerics’ 504s 504s The following objects are masked from ‘package:matrixStats’: 504s 504s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 504s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 504s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 504s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 504s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 504s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 504s colWeightedMeans, colWeightedMedians, colWeightedSds, 504s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 504s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 504s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 504s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 504s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 504s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 504s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 504s rowWeightedSds, rowWeightedVars 504s 504s The following object is masked from ‘package:Biobase’: 504s 504s rowMedians 504s 513s > 513s > 513s Other tests are currently unsupported! 513s They will be progressively added. 513s autopkgtest [13:49:16]: test pkg-r-autopkgtest: -----------------------] 514s autopkgtest [13:49:17]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 514s pkg-r-autopkgtest PASS 514s autopkgtest [13:49:17]: @@@@@@@@@@@@@@@@@@@@ summary 514s pkg-r-autopkgtest PASS 532s Creating nova instance adt-noble-arm64-r-bioc-edaseq-20240316-134043-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...