0s autopkgtest [17:28:59]: starting date and time: 2024-03-16 17:28:59+0000 0s autopkgtest [17:28:59]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:28:59]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.l4iopwp5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-dss --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-7.secgroup --name adt-noble-arm64-r-bioc-dss-20240316-172859-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 93s autopkgtest [17:30:32]: testbed dpkg architecture: arm64 93s autopkgtest [17:30:32]: testbed apt version: 2.7.12 93s autopkgtest [17:30:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 94s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 94s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 95s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 95s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 95s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 95s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 95s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 95s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 95s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 95s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 96s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 96s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 96s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 97s Fetched 9060 kB in 2s (4027 kB/s) 97s Reading package lists... 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s Calculating upgrade... 101s The following packages will be REMOVED: 101s libglib2.0-0 libssl3 101s The following NEW packages will be installed: 101s libglib2.0-0t64 libssl3t64 xdg-user-dirs 101s The following packages have been kept back: 101s curl 101s The following packages will be upgraded: 101s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 101s ubuntu-minimal ubuntu-standard 101s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 101s Need to get 4613 kB of archives. 101s After this operation, 211 kB of additional disk space will be used. 101s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 102s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 102s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 102s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 102s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 102s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 102s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 102s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 102s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 102s Fetched 4613 kB in 1s (6625 kB/s) 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 103s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 103s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 103s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 103s udisks2 depends on libglib2.0-0 (>= 2.77.0). 103s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 103s python3-gi depends on libglib2.0-0 (>= 2.77.0). 103s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 103s netplan.io depends on libglib2.0-0 (>= 2.70.0). 103s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 103s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 103s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 103s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 103s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 103s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 103s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 103s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 103s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 103s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 103s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 103s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 103s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 103s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 103s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 103s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 103s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 103s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 103s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 103s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 103s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 103s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 103s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 103s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 103s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 103s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 103s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 103s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 103s fwupd depends on libglib2.0-0 (>= 2.79.0). 103s bolt depends on libglib2.0-0 (>= 2.56.0). 103s 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 103s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 103s Selecting previously unselected package libglib2.0-0t64:arm64. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 103s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 103s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 103s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 103s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 103s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 103s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 103s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 103s wget depends on libssl3 (>= 3.0.0). 103s u-boot-tools depends on libssl3 (>= 3.0.0). 103s tnftp depends on libssl3 (>= 3.0.0). 103s tcpdump depends on libssl3 (>= 3.0.0). 103s systemd-resolved depends on libssl3 (>= 3.0.0). 103s systemd depends on libssl3 (>= 3.0.0). 103s sudo depends on libssl3 (>= 3.0.0). 103s sbsigntool depends on libssl3 (>= 3.0.0). 103s rsync depends on libssl3 (>= 3.0.0). 103s python3-cryptography depends on libssl3 (>= 3.0.0). 103s openssh-server depends on libssl3 (>= 3.0.10). 103s openssh-client depends on libssl3 (>= 3.0.10). 103s mtd-utils depends on libssl3 (>= 3.0.0). 103s mokutil depends on libssl3 (>= 3.0.0). 103s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 103s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 103s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 103s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 103s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 103s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 103s libnvme1 depends on libssl3 (>= 3.0.0). 103s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 103s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 103s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 103s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 103s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 103s kmod depends on libssl3 (>= 3.0.0). 103s dhcpcd-base depends on libssl3 (>= 3.0.0). 103s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 103s 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 103s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 103s Selecting previously unselected package libssl3t64:arm64. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 103s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 103s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 103s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 103s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 103s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 103s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 103s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 103s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 103s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 103s Unpacking ubuntu-minimal (1.536) over (1.535) ... 103s Selecting previously unselected package xdg-user-dirs. 103s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 103s Unpacking xdg-user-dirs (0.18-1) ... 104s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 104s Unpacking ubuntu-standard (1.536) over (1.535) ... 104s Setting up ubuntu-minimal (1.536) ... 104s Setting up xdg-user-dirs (0.18-1) ... 104s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 104s Setting up libtirpc-common (1.3.4+ds-1.1) ... 104s Setting up ubuntu-standard (1.536) ... 104s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 104s No schema files found: doing nothing. 104s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 104s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 104s Setting up openssl (3.0.13-0ubuntu1) ... 104s Setting up readline-common (8.2-3.1) ... 104s Processing triggers for man-db (2.12.0-3) ... 105s Processing triggers for install-info (7.1-3) ... 105s Processing triggers for libc-bin (2.39-0ubuntu2) ... 105s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 108s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 108s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 108s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 108s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 110s Reading package lists... 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Calculating upgrade... 111s The following packages have been kept back: 111s curl 111s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 114s autopkgtest [17:30:53]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 114s autopkgtest [17:30:53]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-dss 117s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dss 2.50.1+dfsg-1 (dsc) [2101 B] 117s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dss 2.50.1+dfsg-1 (tar) [1023 kB] 117s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dss 2.50.1+dfsg-1 (diff) [2568 B] 117s gpgv: Signature made Mon Jan 15 07:05:50 2024 UTC 117s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 117s gpgv: issuer "tille@debian.org" 117s gpgv: Can't check signature: No public key 117s dpkg-source: warning: cannot verify inline signature for ./r-bioc-dss_2.50.1+dfsg-1.dsc: no acceptable signature found 118s autopkgtest [17:30:57]: testing package r-bioc-dss version 2.50.1+dfsg-1 118s autopkgtest [17:30:57]: build not needed 119s autopkgtest [17:30:58]: test pkg-r-autopkgtest: preparing testbed 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s Starting pkgProblemResolver with broken count: 0 121s Starting 2 pkgProblemResolver with broken count: 0 121s Done 122s The following additional packages will be installed: 122s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 122s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 122s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 122s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 122s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 122s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 122s gfortran-aarch64-linux-gnu hdf5-helpers icu-devtools javascript-common 122s libaec-dev libaec0 libasan8 libatomic1 libbibtex-parser-perl libblas-dev 122s libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin 122s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 122s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 122s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 122s libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 122s libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 libicu-dev 122s libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 122s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 122s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 122s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 122s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 122s libjs-popper.js libjs-prettify libjs-sifter.js 122s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 122s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 122s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 122s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 122s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 122s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 122s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 122s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 122s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 122s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 122s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 122s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 122s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 122s r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 122s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biostrings r-bioc-bsgenome 122s r-bioc-bsseq r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dss 122s r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 122s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-hdf5array 122s r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-rhdf5 122s r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools 122s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 122s r-bioc-sparsematrixstats r-bioc-summarizedexperiment r-bioc-xvector 122s r-bioc-zlibbioc r-cran-abind r-cran-base64enc r-cran-bh r-cran-biocmanager 122s r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 122s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 122s r-cran-crayon r-cran-data.table r-cran-digest r-cran-ellipsis 122s r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-fontawesome 122s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 122s r-cran-glue r-cran-gtools r-cran-highr r-cran-htmltools r-cran-httpuv 122s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 122s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 122s r-cran-locfit r-cran-magrittr r-cran-matrix r-cran-matrixstats 122s r-cran-memoise r-cran-mime r-cran-munsell r-cran-permute r-cran-pkgkitten 122s r-cran-promises r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 122s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-restfulr 122s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-sass r-cran-scales 122s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi 122s r-cran-stringr r-cran-tinytex r-cran-vctrs r-cran-viridislite r-cran-withr 122s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto t1utils 122s tex-common texlive-base texlive-bibtex-extra texlive-binaries 122s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 122s Suggested packages: 122s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 122s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 122s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 122s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 122s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 122s libboost-context1.83-dev libboost-contract1.83-dev 122s libboost-coroutine1.83-dev libboost-date-time1.83-dev 122s libboost-exception1.83-dev libboost-fiber1.83-dev 122s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 122s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 122s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 122s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 122s libboost-numpy1.83-dev libboost-program-options1.83-dev 122s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 122s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 122s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 122s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 122s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 122s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 122s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 122s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 122s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 122s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 122s librsvg2-bin groff ghc php python ruby libjs-katex 122s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 122s r-base-html texlive-plain-generic texlive-fonts-recommended 122s texlive-fonts-extra texlive-extra-utils texinfo r-cran-testthat 122s r-cran-rcmdcheck r-bioc-all r-cran-runit r-bioc-annotationdbi r-bioc-affy 122s r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 122s r-bioc-variantannotation r-bioc-shortread r-cran-batchtools 122s r-bioc-genomicfeatures r-bioc-genefilter r-cran-lobstr r-cran-profmem 122s r-cran-readr r-bioc-org.hs.eg.db r-cran-seuratobject r-bioc-gviz 122s r-bioc-annotationhub r-bioc-dexseq r-bioc-keggrest r-bioc-experimenthub 122s r-bioc-singlecellexperiment r-cran-biasedurn r-cran-ellipse r-cran-gplots 122s r-cran-mass r-bioc-go.db r-cran-bit64 r-cran-bench r-cran-dplyr 122s r-cran-ggplot2 r-cran-mockery r-cran-tinytest r-bioc-graph r-cran-kernsmooth 122s r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-png 122s r-cran-jpeg r-cran-viridis r-cran-rstudioapi r-cran-covr r-cran-markdown 122s r-cran-getopt r-cran-interp r-cran-gam r-cran-httr r-cran-vegan 122s r-cran-sessioninfo r-cran-roxygen2 r-cran-inline r-cran-rmpi r-cran-rlecuyer 122s r-cran-callr r-cran-plm r-cran-zoo r-cran-survival debhelper ghostscript gv 122s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 122s hintview texlive-latex-base-doc wp2latex 122s Recommended packages: 122s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 122s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-testthat 122s r-cran-curl r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi 122s r-cran-miniui r-cran-rsconnect r-cran-tibble r-cran-testit r-cran-tufte 122s r-cran-xml2 r-cran-webshot r-cran-ggplot2 r-cran-thematic r-cran-callr 122s r-cran-covr r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot 122s r-cran-whoami r-cran-bench r-cran-brio r-cran-decor r-cran-desc 122s r-cran-lobstr r-cran-progress r-cran-bit64 r-cran-bit r-cran-xts 122s r-cran-nanotime r-cran-zoo r-cran-dplyr r-cran-rsvg r-cran-pillar 122s r-cran-spelling r-cran-survival r-cran-dbi r-cran-rsqlite r-cran-waldo 122s r-cran-cairo r-cran-markdown r-cran-ragg r-cran-httr r-cran-r.rsp r-cran-sf 122s r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-png r-cran-reticulate 122s r-cran-rgl r-cran-tikzdevice r-cran-svglite node-highlight.js r-cran-lintr 122s r-cran-tidyverse r-cran-r.devices r-cran-future r-cran-purrr r-cran-runit 122s r-cran-usethis r-cran-dygraphs r-cran-dichromat r-cran-hms r-cran-generics 122s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 122s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 122s x11-xserver-utils 122s The following packages will be REMOVED: 122s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 122s The following NEW packages will be installed: 122s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 122s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 122s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 122s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 122s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 122s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 122s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 122s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 122s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 122s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 122s libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 122s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 122s libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 122s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 122s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 122s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 122s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 122s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 122s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 122s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 122s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 122s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 122s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 122s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 122s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 122s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 122s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 122s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 122s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 122s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 122s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 122s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 122s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 122s r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 122s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biostrings r-bioc-bsgenome 122s r-bioc-bsseq r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dss 122s r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 122s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-hdf5array 122s r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-rhdf5 122s r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools 122s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 122s r-bioc-sparsematrixstats r-bioc-summarizedexperiment r-bioc-xvector 122s r-bioc-zlibbioc r-cran-abind r-cran-base64enc r-cran-bh r-cran-biocmanager 122s r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 122s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 122s r-cran-crayon r-cran-data.table r-cran-digest r-cran-ellipsis 122s r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-fontawesome 122s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 122s r-cran-glue r-cran-gtools r-cran-highr r-cran-htmltools r-cran-httpuv 122s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 122s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 122s r-cran-locfit r-cran-magrittr r-cran-matrix r-cran-matrixstats 122s r-cran-memoise r-cran-mime r-cran-munsell r-cran-permute r-cran-pkgkitten 122s r-cran-promises r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 122s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-restfulr 122s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-sass r-cran-scales 122s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi 122s r-cran-stringr r-cran-tinytex r-cran-vctrs r-cran-viridislite r-cran-withr 122s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto t1utils 122s tex-common texlive-base texlive-bibtex-extra texlive-binaries 122s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 122s The following packages will be upgraded: 122s curl 122s 1 upgraded, 289 newly installed, 5 to remove and 0 not upgraded. 122s Need to get 440 MB/440 MB of archives. 122s After this operation, 1397 MB of additional disk space will be used. 122s Get:1 /tmp/autopkgtest.EhgjP1/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [752 B] 122s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 122s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 123s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 123s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 123s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 123s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 123s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 123s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 123s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 123s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 123s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 123s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 123s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 123s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 123s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 123s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 123s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 123s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 123s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 123s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 123s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 123s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 123s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 123s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 123s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 123s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 123s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 123s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 123s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 123s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 124s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 124s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 124s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 124s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 124s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 124s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 124s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 124s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 124s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 124s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 124s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 124s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 124s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 124s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 124s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 124s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 124s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 124s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 124s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 124s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 124s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 124s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 125s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 125s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 125s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 125s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 hdf5-helpers arm64 1.10.10+repack-3ubuntu1 [15.5 kB] 125s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 125s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 125s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 125s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 125s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 125s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 125s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 125s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 125s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 125s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 125s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 125s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 125s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 125s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 125s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 125s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 125s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 125s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 125s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu7 [454 kB] 125s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 125s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 125s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 125s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 125s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 125s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 125s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-cpp-103-1 arm64 1.10.10+repack-3ubuntu1 [120 kB] 125s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-fortran-102 arm64 1.10.10+repack-3ubuntu1 [86.3 kB] 125s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 125s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.10+repack-3ubuntu1 [30.7 kB] 125s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-cpp-100 arm64 1.10.10+repack-3ubuntu1 [10.7 kB] 125s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 125s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 125s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 125s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 125s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 125s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 125s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 125s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl-dev arm64 3.0.13-0ubuntu1 [2335 kB] 125s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-dev arm64 1.10.10+repack-3ubuntu1 [3036 kB] 125s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 125s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 125s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 126s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 126s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 126s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 126s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 126s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 126s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 126s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 127s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 127s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 127s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 127s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 127s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 127s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 127s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 127s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 127s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 127s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 128s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 129s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 129s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 129s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 129s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 129s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 129s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 129s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 129s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 129s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 129s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 129s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 129s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 129s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 129s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 129s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 129s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 129s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 129s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 129s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 129s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 129s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 129s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 129s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 129s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 129s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 129s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 129s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 129s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 129s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 129s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 129s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 130s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 130s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 130s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 130s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 130s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 130s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 130s Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 130s Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 130s Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 130s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 131s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 131s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 131s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 131s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 131s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 131s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 131s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 132s Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 132s Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 132s Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 132s Get:169 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 132s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 132s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 132s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 132s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 132s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 132s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 132s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 132s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 132s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 132s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 132s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 132s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 132s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 132s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 132s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 132s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 132s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 132s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 132s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-beachmat arm64 2.18.1+ds-1 [1561 kB] 132s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 132s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 132s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 132s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 132s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 132s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 132s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 132s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 132s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 132s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 132s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 132s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 132s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 132s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 132s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 132s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 133s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 133s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 133s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 133s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 133s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 133s Get:210 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 134s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 134s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 134s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 134s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 134s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 134s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 134s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 134s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 134s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 134s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 134s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 134s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 134s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 134s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 134s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 135s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 135s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 135s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 135s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 135s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 135s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 135s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 135s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 135s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 135s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 135s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 135s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 135s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 135s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 135s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 135s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 135s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 135s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 135s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 135s Get:245 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 135s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 135s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 136s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 136s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 139s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 139s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 139s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 139s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 139s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 139s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 140s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 140s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 140s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 140s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 140s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 140s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 140s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 140s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 140s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 140s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 141s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 141s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 141s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 141s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 141s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 141s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 141s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 141s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 141s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtools arm64 3.9.5-1 [340 kB] 141s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 141s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 141s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 141s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 141s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsematrixstats arm64 1.14.0+dfsg-1 [815 kB] 141s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 141s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-permute all 0.9-7-1 [228 kB] 141s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 141s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 141s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5lib arm64 1.24.2+dfsg-1 [96.1 kB] 141s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5filters arm64 1.14.1+dfsg-3 [135 kB] 141s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5 arm64 2.46.1+dfsg-1 [805 kB] 141s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-hdf5array arm64 1.30.1-1 [8757 kB] 142s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsseq arm64 1.38.0+dfsg-1 [2945 kB] 142s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dss arm64 2.50.1+dfsg-1 [651 kB] 142s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 143s Preconfiguring packages ... 143s Fetched 440 MB in 20s (22.4 MB/s) 143s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 143s wget depends on libpsl5 (>= 0.16.0). 143s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 143s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 143s 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 143s Removing libpsl5:arm64 (0.21.2-1build1) ... 144s Selecting previously unselected package libpsl5t64:arm64. 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 144s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 144s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 144s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 144s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 144s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 144s Selecting previously unselected package libcurl4t64:arm64. 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 144s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 144s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 144s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 144s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 144s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 144s 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 144s Removing libpng16-16:arm64 (1.6.43-1) ... 144s Selecting previously unselected package libpng16-16t64:arm64. 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 144s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 144s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 144s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 144s parted depends on libreadline8 (>= 6.0). 144s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 144s gpgsm depends on libreadline8 (>= 6.0). 144s gpgconf depends on libreadline8 (>= 6.0). 144s gpg depends on libreadline8 (>= 6.0). 144s gawk depends on libreadline8 (>= 6.0). 144s fdisk depends on libreadline8 (>= 6.0). 144s 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 144s Removing libreadline8:arm64 (8.2-3) ... 144s Selecting previously unselected package libreadline8t64:arm64. 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 144s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 144s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 144s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 144s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 144s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 144s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 144s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 144s lsof depends on libtirpc3 (>= 1.0.2). 144s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 144s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 144s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 144s iproute2 depends on libtirpc3 (>= 1.0.2). 144s 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 144s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 144s Selecting previously unselected package libtirpc3t64:arm64. 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 144s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 144s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 144s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 144s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 144s Selecting previously unselected package libc-dev-bin. 145s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 145s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 145s Selecting previously unselected package linux-libc-dev:arm64. 145s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 145s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 145s Selecting previously unselected package libcrypt-dev:arm64. 145s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 145s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 145s Selecting previously unselected package libtirpc-dev:arm64. 145s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 145s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 145s Selecting previously unselected package libnsl-dev:arm64. 145s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 145s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 145s Selecting previously unselected package rpcsvc-proto. 145s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 145s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 145s Selecting previously unselected package libc6-dev:arm64. 145s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 145s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 145s Selecting previously unselected package libisl23:arm64. 145s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 145s Unpacking libisl23:arm64 (0.26-3) ... 145s Selecting previously unselected package libmpc3:arm64. 145s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 145s Unpacking libmpc3:arm64 (1.3.1-1) ... 145s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 145s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 145s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 145s Selecting previously unselected package cpp-13. 145s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 145s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 146s Selecting previously unselected package cpp-aarch64-linux-gnu. 146s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 146s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 146s Selecting previously unselected package cpp. 146s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 146s Unpacking cpp (4:13.2.0-7ubuntu1) ... 146s Selecting previously unselected package libcc1-0:arm64. 146s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 146s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 146s Selecting previously unselected package libgomp1:arm64. 146s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 146s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 146s Selecting previously unselected package libitm1:arm64. 146s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 146s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 146s Selecting previously unselected package libatomic1:arm64. 146s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 146s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 146s Selecting previously unselected package libasan8:arm64. 146s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 146s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 146s Selecting previously unselected package liblsan0:arm64. 146s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 146s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 146s Selecting previously unselected package libtsan2:arm64. 146s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 146s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 146s Selecting previously unselected package libubsan1:arm64. 146s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 146s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 146s Selecting previously unselected package libhwasan0:arm64. 146s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 146s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 147s Selecting previously unselected package libgcc-13-dev:arm64. 147s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 147s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 147s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 147s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 147s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 147s Selecting previously unselected package gcc-13. 147s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 147s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 147s Selecting previously unselected package gcc-aarch64-linux-gnu. 147s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 147s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 147s Selecting previously unselected package gcc. 147s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 147s Unpacking gcc (4:13.2.0-7ubuntu1) ... 147s Selecting previously unselected package libstdc++-13-dev:arm64. 147s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 147s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 147s Selecting previously unselected package g++-13-aarch64-linux-gnu. 147s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 147s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 148s Selecting previously unselected package g++-13. 148s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 148s Unpacking g++-13 (13.2.0-17ubuntu2) ... 148s Selecting previously unselected package g++-aarch64-linux-gnu. 148s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 148s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 148s Selecting previously unselected package g++. 148s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 148s Unpacking g++ (4:13.2.0-7ubuntu1) ... 148s Selecting previously unselected package build-essential. 148s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 148s Unpacking build-essential (12.10ubuntu1) ... 148s Selecting previously unselected package dctrl-tools. 148s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 148s Unpacking dctrl-tools (2.24-3build2) ... 148s Selecting previously unselected package fonts-dejavu-mono. 148s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 148s Unpacking fonts-dejavu-mono (2.37-8) ... 148s Selecting previously unselected package fonts-dejavu-core. 148s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 148s Unpacking fonts-dejavu-core (2.37-8) ... 148s Selecting previously unselected package fontconfig-config. 148s Preparing to unpack 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fonts-lmodern. 149s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 149s Unpacking fonts-lmodern (2.005-1) ... 149s Selecting previously unselected package fonts-mathjax. 149s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 149s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 149s Selecting previously unselected package libgfortran5:arm64. 149s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 149s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package libgfortran-13-dev:arm64. 149s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 149s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 149s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 150s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 150s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 150s Selecting previously unselected package gfortran-13. 150s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 150s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 150s Selecting previously unselected package gfortran-aarch64-linux-gnu. 150s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 150s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 150s Selecting previously unselected package gfortran. 150s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 150s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 150s Selecting previously unselected package hdf5-helpers. 150s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_arm64.deb ... 150s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 150s Selecting previously unselected package icu-devtools. 150s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_arm64.deb ... 150s Unpacking icu-devtools (74.2-1ubuntu1) ... 150s Selecting previously unselected package javascript-common. 150s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 150s Unpacking javascript-common (11+nmu1) ... 150s Selecting previously unselected package libaec0:arm64. 151s Preparing to unpack .../053-libaec0_1.1.2-1_arm64.deb ... 151s Unpacking libaec0:arm64 (1.1.2-1) ... 151s Selecting previously unselected package libio-string-perl. 151s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 151s Unpacking libio-string-perl (1.08-4) ... 151s Selecting previously unselected package liblatex-tounicode-perl. 151s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 151s Unpacking liblatex-tounicode-perl (0.54-2) ... 151s Selecting previously unselected package libbibtex-parser-perl. 151s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 151s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 151s Selecting previously unselected package libblas3:arm64. 151s Preparing to unpack .../057-libblas3_3.12.0-3_arm64.deb ... 151s Unpacking libblas3:arm64 (3.12.0-3) ... 151s Selecting previously unselected package libblas-dev:arm64. 151s Preparing to unpack .../058-libblas-dev_3.12.0-3_arm64.deb ... 151s Unpacking libblas-dev:arm64 (3.12.0-3) ... 151s Selecting previously unselected package libsnappy1v5:arm64. 151s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_arm64.deb ... 151s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 151s Selecting previously unselected package libblosc1:arm64. 152s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_arm64.deb ... 152s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 152s Selecting previously unselected package libboost1.83-dev:arm64. 152s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 152s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 154s Selecting previously unselected package libboost-dev:arm64. 154s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 154s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 154s Selecting previously unselected package libbz2-dev:arm64. 154s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 154s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 154s Selecting previously unselected package libpixman-1-0:arm64. 154s Preparing to unpack .../064-libpixman-1-0_0.42.2-1_arm64.deb ... 154s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 154s Selecting previously unselected package libxcb-render0:arm64. 154s Preparing to unpack .../065-libxcb-render0_1.15-1_arm64.deb ... 154s Unpacking libxcb-render0:arm64 (1.15-1) ... 154s Selecting previously unselected package libxcb-shm0:arm64. 154s Preparing to unpack .../066-libxcb-shm0_1.15-1_arm64.deb ... 154s Unpacking libxcb-shm0:arm64 (1.15-1) ... 154s Selecting previously unselected package libxrender1:arm64. 154s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 154s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 154s Selecting previously unselected package libcairo2:arm64. 154s Preparing to unpack .../068-libcairo2_1.18.0-1_arm64.deb ... 154s Unpacking libcairo2:arm64 (1.18.0-1) ... 155s Selecting previously unselected package libcurl4-openssl-dev:arm64. 155s Preparing to unpack .../069-libcurl4-openssl-dev_8.5.0-2ubuntu7_arm64.deb ... 155s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 155s Selecting previously unselected package libdatrie1:arm64. 155s Preparing to unpack .../070-libdatrie1_0.2.13-3_arm64.deb ... 155s Unpacking libdatrie1:arm64 (0.2.13-3) ... 155s Selecting previously unselected package libdeflate0:arm64. 155s Preparing to unpack .../071-libdeflate0_1.19-1_arm64.deb ... 155s Unpacking libdeflate0:arm64 (1.19-1) ... 155s Selecting previously unselected package libgraphite2-3:arm64. 155s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_arm64.deb ... 155s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 155s Selecting previously unselected package libharfbuzz0b:arm64. 155s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_arm64.deb ... 155s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 155s Selecting previously unselected package libsz2:arm64. 155s Preparing to unpack .../074-libsz2_1.1.2-1_arm64.deb ... 155s Unpacking libsz2:arm64 (1.1.2-1) ... 155s Selecting previously unselected package libhdf5-103-1:arm64. 155s Preparing to unpack .../075-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 155s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 155s Selecting previously unselected package libhdf5-cpp-103-1:arm64. 155s Preparing to unpack .../076-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 155s Unpacking libhdf5-cpp-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 155s Selecting previously unselected package libhdf5-fortran-102:arm64. 155s Preparing to unpack .../077-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_arm64.deb ... 155s Unpacking libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 155s Selecting previously unselected package libhdf5-hl-100:arm64. 155s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 155s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 155s Selecting previously unselected package libhdf5-hl-fortran-100:arm64. 155s Preparing to unpack .../079-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_arm64.deb ... 155s Unpacking libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 155s Selecting previously unselected package libhdf5-hl-cpp-100:arm64. 155s Preparing to unpack .../080-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_arm64.deb ... 155s Unpacking libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 155s Selecting previously unselected package zlib1g-dev:arm64. 155s Preparing to unpack .../081-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 155s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 155s Selecting previously unselected package libjpeg-turbo8:arm64. 155s Preparing to unpack .../082-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 155s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 155s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 156s Preparing to unpack .../083-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 156s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 156s Selecting previously unselected package libjpeg8:arm64. 156s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_arm64.deb ... 156s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 156s Selecting previously unselected package libjpeg8-dev:arm64. 156s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 156s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 156s Selecting previously unselected package libjpeg-dev:arm64. 156s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 156s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 156s Selecting previously unselected package libaec-dev:arm64. 156s Preparing to unpack .../087-libaec-dev_1.1.2-1_arm64.deb ... 156s Unpacking libaec-dev:arm64 (1.1.2-1) ... 156s Selecting previously unselected package libssl-dev:arm64. 156s Preparing to unpack .../088-libssl-dev_3.0.13-0ubuntu1_arm64.deb ... 156s Unpacking libssl-dev:arm64 (3.0.13-0ubuntu1) ... 156s Selecting previously unselected package libhdf5-dev. 156s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_arm64.deb ... 156s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 156s Selecting previously unselected package x11-common. 156s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 156s Unpacking x11-common (1:7.7+23ubuntu2) ... 156s Selecting previously unselected package libice6:arm64. 156s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_arm64.deb ... 156s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 156s Selecting previously unselected package libicu-dev:arm64. 156s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_arm64.deb ... 156s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 156s Selecting previously unselected package libjs-bootstrap. 156s Preparing to unpack .../093-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 156s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 156s Selecting previously unselected package libjs-popper.js. 156s Preparing to unpack .../094-libjs-popper.js_1.16.1+ds-6_all.deb ... 156s Unpacking libjs-popper.js (1.16.1+ds-6) ... 156s Selecting previously unselected package libjs-bootstrap4. 156s Preparing to unpack .../095-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 157s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 157s Selecting previously unselected package libjs-d3. 157s Preparing to unpack .../096-libjs-d3_3.5.17-4_all.deb ... 157s Unpacking libjs-d3 (3.5.17-4) ... 157s Selecting previously unselected package libjs-es5-shim. 157s Preparing to unpack .../097-libjs-es5-shim_4.6.7-2_all.deb ... 157s Unpacking libjs-es5-shim (4.6.7-2) ... 157s Selecting previously unselected package libjs-highlight.js. 157s Preparing to unpack .../098-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 157s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 157s Selecting previously unselected package libjs-jquery. 157s Preparing to unpack .../099-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 157s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 157s Selecting previously unselected package libjs-jquery-datatables. 157s Preparing to unpack .../100-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 157s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 157s Selecting previously unselected package libjs-sifter.js. 157s Preparing to unpack .../101-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 157s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 157s Selecting previously unselected package libjs-microplugin.js. 157s Preparing to unpack .../102-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 157s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 157s Selecting previously unselected package libjs-jquery-selectize.js. 157s Preparing to unpack .../103-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 157s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 157s Selecting previously unselected package libjs-jquery-ui. 157s Preparing to unpack .../104-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 157s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 157s Selecting previously unselected package libjs-json. 157s Preparing to unpack .../105-libjs-json_0~20221030+~1.0.8-1_all.deb ... 157s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 157s Selecting previously unselected package libjs-lunr. 157s Preparing to unpack .../106-libjs-lunr_2.3.9~dfsg-2_all.deb ... 157s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 157s Selecting previously unselected package libjs-prettify. 157s Preparing to unpack .../107-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 157s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 157s Selecting previously unselected package libkpathsea6:arm64. 157s Preparing to unpack .../108-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 157s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 157s Selecting previously unselected package liblapack3:arm64. 157s Preparing to unpack .../109-liblapack3_3.12.0-3_arm64.deb ... 157s Unpacking liblapack3:arm64 (3.12.0-3) ... 158s Selecting previously unselected package liblapack-dev:arm64. 158s Preparing to unpack .../110-liblapack-dev_3.12.0-3_arm64.deb ... 158s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 158s Selecting previously unselected package liblerc4:arm64. 158s Preparing to unpack .../111-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 158s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 158s Selecting previously unselected package liblua5.4-0:arm64. 158s Preparing to unpack .../112-liblua5.4-0_5.4.6-3_arm64.deb ... 158s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 158s Selecting previously unselected package libncurses-dev:arm64. 158s Preparing to unpack .../113-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 158s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 158s Selecting previously unselected package libthai-data. 158s Preparing to unpack .../114-libthai-data_0.1.29-2_all.deb ... 158s Unpacking libthai-data (0.1.29-2) ... 158s Selecting previously unselected package libthai0:arm64. 158s Preparing to unpack .../115-libthai0_0.1.29-2_arm64.deb ... 158s Unpacking libthai0:arm64 (0.1.29-2) ... 158s Selecting previously unselected package libpango-1.0-0:arm64. 158s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 158s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 158s Selecting previously unselected package libpangoft2-1.0-0:arm64. 158s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 158s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 158s Selecting previously unselected package libpangocairo-1.0-0:arm64. 158s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 158s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 158s Selecting previously unselected package libpaper1:arm64. 158s Preparing to unpack .../119-libpaper1_1.1.29_arm64.deb ... 158s Unpacking libpaper1:arm64 (1.1.29) ... 158s Selecting previously unselected package libpaper-utils. 158s Preparing to unpack .../120-libpaper-utils_1.1.29_arm64.deb ... 158s Unpacking libpaper-utils (1.1.29) ... 158s Selecting previously unselected package libpcre2-16-0:arm64. 158s Preparing to unpack .../121-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 158s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 158s Selecting previously unselected package libpcre2-32-0:arm64. 159s Preparing to unpack .../122-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 159s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 159s Selecting previously unselected package libpcre2-posix3:arm64. 159s Preparing to unpack .../123-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 159s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 159s Selecting previously unselected package libpcre2-dev:arm64. 159s Preparing to unpack .../124-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 159s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 159s Selecting previously unselected package libpkgconf3:arm64. 159s Preparing to unpack .../125-libpkgconf3_1.8.1-2_arm64.deb ... 159s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 159s Selecting previously unselected package libpng-dev:arm64. 159s Preparing to unpack .../126-libpng-dev_1.6.43-3_arm64.deb ... 159s Unpacking libpng-dev:arm64 (1.6.43-3) ... 159s Selecting previously unselected package libpotrace0:arm64. 159s Preparing to unpack .../127-libpotrace0_1.16-2_arm64.deb ... 159s Unpacking libpotrace0:arm64 (1.16-2) ... 159s Selecting previously unselected package libptexenc1:arm64. 159s Preparing to unpack .../128-libptexenc1_2023.20230311.66589-9_arm64.deb ... 159s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 159s Selecting previously unselected package libreadline-dev:arm64. 159s Preparing to unpack .../129-libreadline-dev_8.2-3.1_arm64.deb ... 159s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 159s Selecting previously unselected package libsharpyuv0:arm64. 159s Preparing to unpack .../130-libsharpyuv0_1.3.2-0.4_arm64.deb ... 159s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 159s Selecting previously unselected package libsm6:arm64. 159s Preparing to unpack .../131-libsm6_2%3a1.2.3-1build2_arm64.deb ... 159s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 159s Selecting previously unselected package libsynctex2:arm64. 159s Preparing to unpack .../132-libsynctex2_2023.20230311.66589-9_arm64.deb ... 159s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 159s Selecting previously unselected package libtcl8.6:arm64. 159s Preparing to unpack .../133-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 159s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 159s Selecting previously unselected package libteckit0:arm64. 159s Preparing to unpack .../134-libteckit0_2.5.12+ds1-1_arm64.deb ... 159s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 159s Selecting previously unselected package libtexlua53-5:arm64. 159s Preparing to unpack .../135-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 159s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 159s Selecting previously unselected package libjbig0:arm64. 159s Preparing to unpack .../136-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 159s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 159s Selecting previously unselected package libwebp7:arm64. 159s Preparing to unpack .../137-libwebp7_1.3.2-0.4_arm64.deb ... 159s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 159s Selecting previously unselected package libtiff6:arm64. 160s Preparing to unpack .../138-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 160s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 160s Selecting previously unselected package libxft2:arm64. 160s Preparing to unpack .../139-libxft2_2.3.6-1_arm64.deb ... 160s Unpacking libxft2:arm64 (2.3.6-1) ... 160s Selecting previously unselected package libxss1:arm64. 160s Preparing to unpack .../140-libxss1_1%3a1.2.3-1build2_arm64.deb ... 160s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 160s Selecting previously unselected package libtk8.6:arm64. 160s Preparing to unpack .../141-libtk8.6_8.6.13-2_arm64.deb ... 160s Unpacking libtk8.6:arm64 (8.6.13-2) ... 160s Selecting previously unselected package libxt6t64:arm64. 160s Preparing to unpack .../142-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 160s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 160s Selecting previously unselected package libxmu6:arm64. 160s Preparing to unpack .../143-libxmu6_2%3a1.1.3-3_arm64.deb ... 160s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 160s Selecting previously unselected package libxpm4:arm64. 160s Preparing to unpack .../144-libxpm4_1%3a3.5.17-1_arm64.deb ... 160s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 160s Selecting previously unselected package libxaw7:arm64. 160s Preparing to unpack .../145-libxaw7_2%3a1.0.14-1_arm64.deb ... 160s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 160s Selecting previously unselected package libxi6:arm64. 160s Preparing to unpack .../146-libxi6_2%3a1.8.1-1_arm64.deb ... 160s Unpacking libxi6:arm64 (2:1.8.1-1) ... 160s Selecting previously unselected package libzzip-0-13:arm64. 160s Preparing to unpack .../147-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 160s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 160s Selecting previously unselected package zip. 160s Preparing to unpack .../148-zip_3.0-13_arm64.deb ... 160s Unpacking zip (3.0-13) ... 160s Selecting previously unselected package unzip. 160s Preparing to unpack .../149-unzip_6.0-28ubuntu3_arm64.deb ... 160s Unpacking unzip (6.0-28ubuntu3) ... 160s Selecting previously unselected package xdg-utils. 160s Preparing to unpack .../150-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 160s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 160s Selecting previously unselected package r-base-core. 160s Preparing to unpack .../151-r-base-core_4.3.3-2build1_arm64.deb ... 160s Unpacking r-base-core (4.3.3-2build1) ... 160s Selecting previously unselected package r-cran-littler. 161s Preparing to unpack .../152-r-cran-littler_0.3.19-1_arm64.deb ... 161s Unpacking r-cran-littler (0.3.19-1) ... 161s Selecting previously unselected package littler. 161s Preparing to unpack .../153-littler_0.3.19-1_all.deb ... 161s Unpacking littler (0.3.19-1) ... 161s Selecting previously unselected package node-bootstrap-sass. 161s Preparing to unpack .../154-node-bootstrap-sass_3.4.3-2_all.deb ... 161s Unpacking node-bootstrap-sass (3.4.3-2) ... 161s Selecting previously unselected package node-html5shiv. 161s Preparing to unpack .../155-node-html5shiv_3.7.3+dfsg-5_all.deb ... 161s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 161s Selecting previously unselected package node-normalize.css. 161s Preparing to unpack .../156-node-normalize.css_8.0.1-5_all.deb ... 161s Unpacking node-normalize.css (8.0.1-5) ... 161s Selecting previously unselected package pandoc-data. 161s Preparing to unpack .../157-pandoc-data_3.1.3-1_all.deb ... 161s Unpacking pandoc-data (3.1.3-1) ... 161s Selecting previously unselected package pandoc. 161s Preparing to unpack .../158-pandoc_3.1.3+ds-2_arm64.deb ... 161s Unpacking pandoc (3.1.3+ds-2) ... 162s Selecting previously unselected package pkgconf-bin. 162s Preparing to unpack .../159-pkgconf-bin_1.8.1-2_arm64.deb ... 162s Unpacking pkgconf-bin (1.8.1-2) ... 162s Selecting previously unselected package pkgconf:arm64. 162s Preparing to unpack .../160-pkgconf_1.8.1-2_arm64.deb ... 162s Unpacking pkgconf:arm64 (1.8.1-2) ... 162s Selecting previously unselected package pkg-config:arm64. 162s Preparing to unpack .../161-pkg-config_1.8.1-2_arm64.deb ... 162s Unpacking pkg-config:arm64 (1.8.1-2) ... 162s Selecting previously unselected package liblzma-dev:arm64. 162s Preparing to unpack .../162-liblzma-dev_5.4.5-0.3_arm64.deb ... 162s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 162s Selecting previously unselected package r-base-dev. 162s Preparing to unpack .../163-r-base-dev_4.3.3-2build1_all.deb ... 162s Unpacking r-base-dev (4.3.3-2build1) ... 162s Selecting previously unselected package pkg-r-autopkgtest. 163s Preparing to unpack .../164-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 163s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 163s Selecting previously unselected package r-bioc-biocgenerics. 163s Preparing to unpack .../165-r-bioc-biocgenerics_0.48.1-2_all.deb ... 163s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 163s Selecting previously unselected package r-cran-lattice. 163s Preparing to unpack .../166-r-cran-lattice_0.22-5-1_arm64.deb ... 163s Unpacking r-cran-lattice (0.22-5-1) ... 163s Selecting previously unselected package r-cran-matrix. 163s Preparing to unpack .../167-r-cran-matrix_1.6-5-1_arm64.deb ... 163s Unpacking r-cran-matrix (1.6-5-1) ... 163s Selecting previously unselected package r-cran-matrixstats. 163s Preparing to unpack .../168-r-cran-matrixstats_1.2.0-1_arm64.deb ... 163s Unpacking r-cran-matrixstats (1.2.0-1) ... 163s Selecting previously unselected package r-bioc-matrixgenerics. 163s Preparing to unpack .../169-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 163s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 163s Selecting previously unselected package r-bioc-s4vectors. 163s Preparing to unpack .../170-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 163s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 163s Selecting previously unselected package r-bioc-iranges. 163s Preparing to unpack .../171-r-bioc-iranges_2.36.0-1_arm64.deb ... 163s Unpacking r-bioc-iranges (2.36.0-1) ... 164s Selecting previously unselected package r-cran-abind. 164s Preparing to unpack .../172-r-cran-abind_1.4-5-2_all.deb ... 164s Unpacking r-cran-abind (1.4-5-2) ... 164s Selecting previously unselected package r-cran-crayon. 164s Preparing to unpack .../173-r-cran-crayon_1.5.2-1_all.deb ... 164s Unpacking r-cran-crayon (1.5.2-1) ... 164s Selecting previously unselected package r-bioc-s4arrays. 164s Preparing to unpack .../174-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 164s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 164s Selecting previously unselected package r-bioc-zlibbioc. 164s Preparing to unpack .../175-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 164s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 164s Selecting previously unselected package r-bioc-xvector. 165s Preparing to unpack .../176-r-bioc-xvector_0.42.0-1_arm64.deb ... 165s Unpacking r-bioc-xvector (0.42.0-1) ... 165s Selecting previously unselected package r-bioc-sparsearray. 165s Preparing to unpack .../177-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 165s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 165s Selecting previously unselected package r-bioc-delayedarray. 165s Preparing to unpack .../178-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 165s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 165s Selecting previously unselected package r-cran-pkgkitten. 165s Preparing to unpack .../179-r-cran-pkgkitten_0.2.3-1_all.deb ... 165s Unpacking r-cran-pkgkitten (0.2.3-1) ... 165s Selecting previously unselected package r-cran-rcpp. 165s Preparing to unpack .../180-r-cran-rcpp_1.0.12-1_arm64.deb ... 165s Unpacking r-cran-rcpp (1.0.12-1) ... 165s Selecting previously unselected package r-bioc-beachmat. 165s Preparing to unpack .../181-r-bioc-beachmat_2.18.1+ds-1_arm64.deb ... 165s Unpacking r-bioc-beachmat (2.18.1+ds-1) ... 166s Selecting previously unselected package r-bioc-biobase. 166s Preparing to unpack .../182-r-bioc-biobase_2.62.0-1_arm64.deb ... 166s Unpacking r-bioc-biobase (2.62.0-1) ... 166s Selecting previously unselected package r-bioc-biocio. 166s Preparing to unpack .../183-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 166s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 166s Selecting previously unselected package r-cran-formatr. 166s Preparing to unpack .../184-r-cran-formatr_1.14-1_all.deb ... 166s Unpacking r-cran-formatr (1.14-1) ... 166s Selecting previously unselected package r-cran-lambda.r. 166s Preparing to unpack .../185-r-cran-lambda.r_1.2.4-2build1_all.deb ... 166s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 166s Selecting previously unselected package r-cran-futile.options. 166s Preparing to unpack .../186-r-cran-futile.options_1.0.1-3build1_all.deb ... 166s Unpacking r-cran-futile.options (1.0.1-3build1) ... 166s Selecting previously unselected package r-cran-futile.logger. 166s Preparing to unpack .../187-r-cran-futile.logger_1.4.3-4build1_all.deb ... 166s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 166s Selecting previously unselected package r-cran-snow. 166s Preparing to unpack .../188-r-cran-snow_1%3a0.4.4-2_all.deb ... 166s Unpacking r-cran-snow (1:0.4.4-2) ... 166s Selecting previously unselected package r-cran-codetools. 167s Preparing to unpack .../189-r-cran-codetools_0.2-19-1_all.deb ... 167s Unpacking r-cran-codetools (0.2-19-1) ... 167s Selecting previously unselected package r-cran-bh. 167s Preparing to unpack .../190-r-cran-bh_1.84.0-1_all.deb ... 167s Unpacking r-cran-bh (1.84.0-1) ... 167s Selecting previously unselected package r-cran-cpp11. 167s Preparing to unpack .../191-r-cran-cpp11_0.4.7-1_all.deb ... 167s Unpacking r-cran-cpp11 (0.4.7-1) ... 167s Selecting previously unselected package r-bioc-biocparallel. 167s Preparing to unpack .../192-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 167s Unpacking r-bioc-biocparallel (1.36.0-1) ... 167s Selecting previously unselected package r-cran-base64enc. 167s Preparing to unpack .../193-r-cran-base64enc_0.1-3-3_arm64.deb ... 167s Unpacking r-cran-base64enc (0.1-3-3) ... 167s Selecting previously unselected package r-cran-digest. 167s Preparing to unpack .../194-r-cran-digest_0.6.34-1_arm64.deb ... 167s Unpacking r-cran-digest (0.6.34-1) ... 167s Selecting previously unselected package r-cran-rlang. 167s Preparing to unpack .../195-r-cran-rlang_1.1.3-1_arm64.deb ... 167s Unpacking r-cran-rlang (1.1.3-1) ... 167s Selecting previously unselected package r-cran-ellipsis. 167s Preparing to unpack .../196-r-cran-ellipsis_0.3.2-2_arm64.deb ... 167s Unpacking r-cran-ellipsis (0.3.2-2) ... 167s Selecting previously unselected package r-cran-fastmap. 167s Preparing to unpack .../197-r-cran-fastmap_1.1.1-1_arm64.deb ... 167s Unpacking r-cran-fastmap (1.1.1-1) ... 167s Selecting previously unselected package r-cran-htmltools. 167s Preparing to unpack .../198-r-cran-htmltools_0.5.7-1_arm64.deb ... 167s Unpacking r-cran-htmltools (0.5.7-1) ... 167s Selecting previously unselected package r-cran-evaluate. 168s Preparing to unpack .../199-r-cran-evaluate_0.23-1_all.deb ... 168s Unpacking r-cran-evaluate (0.23-1) ... 168s Selecting previously unselected package r-cran-xfun. 168s Preparing to unpack .../200-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 168s Unpacking r-cran-xfun (0.41+dfsg-1) ... 168s Selecting previously unselected package r-cran-highr. 168s Preparing to unpack .../201-r-cran-highr_0.10+dfsg-1_all.deb ... 168s Unpacking r-cran-highr (0.10+dfsg-1) ... 168s Selecting previously unselected package r-cran-yaml. 168s Preparing to unpack .../202-r-cran-yaml_2.3.8-1_arm64.deb ... 168s Unpacking r-cran-yaml (2.3.8-1) ... 168s Selecting previously unselected package libjs-mathjax. 168s Preparing to unpack .../203-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 168s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 169s Selecting previously unselected package r-cran-knitr. 169s Preparing to unpack .../204-r-cran-knitr_1.45+dfsg-1_all.deb ... 169s Unpacking r-cran-knitr (1.45+dfsg-1) ... 169s Selecting previously unselected package r-cran-cachem. 169s Preparing to unpack .../205-r-cran-cachem_1.0.8-1_arm64.deb ... 169s Unpacking r-cran-cachem (1.0.8-1) ... 170s Selecting previously unselected package r-cran-jquerylib. 170s Preparing to unpack .../206-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 170s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 170s Selecting previously unselected package r-cran-jsonlite. 170s Preparing to unpack .../207-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 170s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 170s Selecting previously unselected package r-cran-cli. 171s Preparing to unpack .../208-r-cran-cli_3.6.2-1_arm64.deb ... 171s Unpacking r-cran-cli (3.6.2-1) ... 171s Selecting previously unselected package r-cran-glue. 171s Preparing to unpack .../209-r-cran-glue_1.7.0-1_arm64.deb ... 171s Unpacking r-cran-glue (1.7.0-1) ... 171s Selecting previously unselected package r-cran-lifecycle. 172s Preparing to unpack .../210-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 172s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 172s Selecting previously unselected package r-cran-memoise. 172s Preparing to unpack .../211-r-cran-memoise_2.0.1-1_all.deb ... 172s Unpacking r-cran-memoise (2.0.1-1) ... 172s Selecting previously unselected package r-cran-mime. 172s Preparing to unpack .../212-r-cran-mime_0.12-1_arm64.deb ... 172s Unpacking r-cran-mime (0.12-1) ... 172s Selecting previously unselected package r-cran-fs. 172s Preparing to unpack .../213-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 172s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 172s Selecting previously unselected package r-cran-r6. 172s Preparing to unpack .../214-r-cran-r6_2.5.1-1_all.deb ... 172s Unpacking r-cran-r6 (2.5.1-1) ... 172s Selecting previously unselected package r-cran-rappdirs. 172s Preparing to unpack .../215-r-cran-rappdirs_0.3.3-1_arm64.deb ... 172s Unpacking r-cran-rappdirs (0.3.3-1) ... 172s Selecting previously unselected package r-cran-sass. 172s Preparing to unpack .../216-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 172s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 172s Selecting previously unselected package r-cran-bslib. 172s Preparing to unpack .../217-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 172s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 173s Selecting previously unselected package r-cran-fontawesome. 173s Preparing to unpack .../218-r-cran-fontawesome_0.5.2-1_all.deb ... 173s Unpacking r-cran-fontawesome (0.5.2-1) ... 173s Selecting previously unselected package r-cran-magrittr. 173s Preparing to unpack .../219-r-cran-magrittr_2.0.3-1_arm64.deb ... 173s Unpacking r-cran-magrittr (2.0.3-1) ... 173s Selecting previously unselected package r-cran-stringi. 173s Preparing to unpack .../220-r-cran-stringi_1.8.3-1_arm64.deb ... 173s Unpacking r-cran-stringi (1.8.3-1) ... 173s Selecting previously unselected package r-cran-vctrs. 173s Preparing to unpack .../221-r-cran-vctrs_0.6.5-1_arm64.deb ... 173s Unpacking r-cran-vctrs (0.6.5-1) ... 173s Selecting previously unselected package r-cran-stringr. 173s Preparing to unpack .../222-r-cran-stringr_1.5.1-1_all.deb ... 173s Unpacking r-cran-stringr (1.5.1-1) ... 173s Selecting previously unselected package r-cran-tinytex. 173s Preparing to unpack .../223-r-cran-tinytex_0.49-1_all.deb ... 173s Unpacking r-cran-tinytex (0.49-1) ... 173s Selecting previously unselected package libjs-modernizr. 173s Preparing to unpack .../224-libjs-modernizr_2.6.2+ds1-5_all.deb ... 173s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 173s Selecting previously unselected package r-cran-later. 173s Preparing to unpack .../225-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 173s Unpacking r-cran-later (1.3.2+dfsg-1) ... 173s Selecting previously unselected package r-cran-promises. 173s Preparing to unpack .../226-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 173s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 173s Selecting previously unselected package r-cran-httpuv. 173s Preparing to unpack .../227-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 173s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 173s Selecting previously unselected package r-cran-xtable. 173s Preparing to unpack .../228-r-cran-xtable_1%3a1.8-4-2_all.deb ... 173s Unpacking r-cran-xtable (1:1.8-4-2) ... 173s Selecting previously unselected package r-cran-sourcetools. 173s Preparing to unpack .../229-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 173s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 173s Selecting previously unselected package r-cran-withr. 174s Preparing to unpack .../230-r-cran-withr_2.5.0-1_all.deb ... 174s Unpacking r-cran-withr (2.5.0-1) ... 174s Selecting previously unselected package r-cran-commonmark. 174s Preparing to unpack .../231-r-cran-commonmark_1.9.1-1_arm64.deb ... 174s Unpacking r-cran-commonmark (1.9.1-1) ... 174s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 174s Preparing to unpack .../232-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 174s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 174s Selecting previously unselected package r-cran-shiny. 174s Preparing to unpack .../233-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 174s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-rmarkdown. 174s Preparing to unpack .../234-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 174s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 174s Selecting previously unselected package r-cran-bookdown. 174s Preparing to unpack .../235-r-cran-bookdown_0.37+dfsg-1_all.deb ... 174s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 174s Selecting previously unselected package r-cran-biocmanager. 174s Preparing to unpack .../236-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 174s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 174s Selecting previously unselected package tex-common. 174s Preparing to unpack .../237-tex-common_6.18_all.deb ... 174s Unpacking tex-common (6.18) ... 174s Selecting previously unselected package t1utils. 174s Preparing to unpack .../238-t1utils_1.41-4build2_arm64.deb ... 174s Unpacking t1utils (1.41-4build2) ... 174s Selecting previously unselected package texlive-binaries. 174s Preparing to unpack .../239-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 174s Unpacking texlive-binaries (2023.20230311.66589-9) ... 174s Selecting previously unselected package texlive-base. 174s Preparing to unpack .../240-texlive-base_2023.20240207-1_all.deb ... 174s Unpacking texlive-base (2023.20240207-1) ... 177s Selecting previously unselected package texlive-latex-base. 177s Preparing to unpack .../241-texlive-latex-base_2023.20240207-1_all.deb ... 177s Unpacking texlive-latex-base (2023.20240207-1) ... 177s Selecting previously unselected package texlive-bibtex-extra. 177s Preparing to unpack .../242-texlive-bibtex-extra_2023.20240207-1_all.deb ... 177s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 178s Selecting previously unselected package r-bioc-biocstyle. 179s Preparing to unpack .../243-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 179s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 179s Selecting previously unselected package r-cran-bitops. 179s Preparing to unpack .../244-r-cran-bitops_1.0-7-1_arm64.deb ... 179s Unpacking r-cran-bitops (1.0-7-1) ... 179s Selecting previously unselected package r-cran-rcurl. 179s Preparing to unpack .../245-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 179s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 179s Selecting previously unselected package r-bioc-genomeinfodbdata. 179s Preparing to unpack .../246-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 179s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 179s Selecting previously unselected package r-bioc-genomeinfodb. 179s Preparing to unpack .../247-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 179s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 179s Selecting previously unselected package r-bioc-biostrings. 179s Preparing to unpack .../248-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 179s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 180s Selecting previously unselected package r-bioc-genomicranges. 180s Preparing to unpack .../249-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 180s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 180s Selecting previously unselected package r-cran-xml. 180s Preparing to unpack .../250-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 180s Unpacking r-cran-xml (3.99-0.16.1-1) ... 180s Selecting previously unselected package r-bioc-rhtslib. 180s Preparing to unpack .../251-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 180s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 180s Selecting previously unselected package r-bioc-rsamtools. 180s Preparing to unpack .../252-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 180s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 180s Selecting previously unselected package r-bioc-summarizedexperiment. 180s Preparing to unpack .../253-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 180s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 180s Selecting previously unselected package r-bioc-genomicalignments. 180s Preparing to unpack .../254-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 180s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 180s Selecting previously unselected package r-cran-rjson. 180s Preparing to unpack .../255-r-cran-rjson_0.2.21-1_arm64.deb ... 180s Unpacking r-cran-rjson (0.2.21-1) ... 180s Selecting previously unselected package r-cran-restfulr. 180s Preparing to unpack .../256-r-cran-restfulr_0.0.15-1_arm64.deb ... 180s Unpacking r-cran-restfulr (0.0.15-1) ... 180s Selecting previously unselected package r-bioc-rtracklayer. 180s Preparing to unpack .../257-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 180s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 180s Selecting previously unselected package r-bioc-bsgenome. 180s Preparing to unpack .../258-r-bioc-bsgenome_1.70.2-1_all.deb ... 180s Unpacking r-bioc-bsgenome (1.70.2-1) ... 180s Selecting previously unselected package r-cran-farver. 180s Preparing to unpack .../259-r-cran-farver_2.1.1-1_arm64.deb ... 180s Unpacking r-cran-farver (2.1.1-1) ... 181s Selecting previously unselected package r-cran-labeling. 181s Preparing to unpack .../260-r-cran-labeling_0.4.3-1_all.deb ... 181s Unpacking r-cran-labeling (0.4.3-1) ... 181s Selecting previously unselected package r-cran-colorspace. 181s Preparing to unpack .../261-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 181s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 181s Selecting previously unselected package r-cran-munsell. 181s Preparing to unpack .../262-r-cran-munsell_0.5.0-2build1_all.deb ... 181s Unpacking r-cran-munsell (0.5.0-2build1) ... 181s Selecting previously unselected package r-cran-rcolorbrewer. 181s Preparing to unpack .../263-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 181s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 181s Selecting previously unselected package r-cran-viridislite. 181s Preparing to unpack .../264-r-cran-viridislite_0.4.2-2_all.deb ... 181s Unpacking r-cran-viridislite (0.4.2-2) ... 181s Selecting previously unselected package r-cran-scales. 181s Preparing to unpack .../265-r-cran-scales_1.3.0-1_all.deb ... 181s Unpacking r-cran-scales (1.3.0-1) ... 181s Selecting previously unselected package r-cran-locfit. 181s Preparing to unpack .../266-r-cran-locfit_1.5-9.8-1_arm64.deb ... 181s Unpacking r-cran-locfit (1.5-9.8-1) ... 181s Selecting previously unselected package r-cran-gtools. 181s Preparing to unpack .../267-r-cran-gtools_3.9.5-1_arm64.deb ... 181s Unpacking r-cran-gtools (3.9.5-1) ... 181s Selecting previously unselected package r-cran-data.table. 181s Preparing to unpack .../268-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 181s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 181s Selecting previously unselected package r-cran-r.methodss3. 181s Preparing to unpack .../269-r-cran-r.methodss3_1.8.2-1_all.deb ... 181s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 181s Selecting previously unselected package r-cran-r.oo. 181s Preparing to unpack .../270-r-cran-r.oo_1.26.0-1_all.deb ... 181s Unpacking r-cran-r.oo (1.26.0-1) ... 181s Selecting previously unselected package r-cran-r.utils. 181s Preparing to unpack .../271-r-cran-r.utils_2.12.3-1_all.deb ... 181s Unpacking r-cran-r.utils (2.12.3-1) ... 181s Selecting previously unselected package r-bioc-sparsematrixstats. 181s Preparing to unpack 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previously unselected package r-bioc-edger. 182s Preparing to unpack .../283-r-bioc-edger_4.0.16+dfsg-1_arm64.deb ... 182s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 182s Selecting previously unselected package autopkgtest-satdep. 182s Preparing to unpack .../284-1-autopkgtest-satdep.deb ... 182s Unpacking autopkgtest-satdep (0) ... 182s Setting up libjs-json (0~20221030+~1.0.8-1) ... 182s Setting up javascript-common (11+nmu1) ... 182s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 182s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 182s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 182s Setting up libpaper1:arm64 (1.1.29) ... 182s 182s Creating config file /etc/papersize with new version 183s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 183s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 183s Setting up libxpm4:arm64 (1:3.5.17-1) ... 183s Setting up hdf5-helpers (1.10.10+repack-3ubuntu1) ... 183s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 183s Setting up libxi6:arm64 (2:1.8.1-1) 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(1.24.2+dfsg-1) ... 189s Setting up r-cran-snow (1:0.4.4-2) ... 189s Setting up r-cran-gtools (3.9.5-1) ... 189s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 189s Setting up r-cran-glue (1.7.0-1) ... 189s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 189s Setting up r-cran-xtable (1:1.8-4-2) ... 189s Setting up r-cran-cli (3.6.2-1) ... 189s Setting up gfortran (4:13.2.0-7ubuntu1) ... 189s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 189s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 189s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 189s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 189s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 189s Setting up 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/usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 189s Setting up r-cran-cachem (1.0.8-1) ... 189s Setting up build-essential (12.10ubuntu1) ... 189s Setting up r-bioc-iranges (2.36.0-1) ... 189s Setting up r-cran-rjson (0.2.21-1) ... 189s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 189s Setting up r-cran-restfulr (0.0.15-1) ... 189s Setting up r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 189s Setting up r-cran-vctrs (0.6.5-1) ... 189s Setting up r-cran-ellipsis (0.3.2-2) ... 189s Setting up r-base-dev (4.3.3-2build1) ... 189s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 189s Setting up r-cran-stringr (1.5.1-1) ... 189s Setting up r-bioc-biocparallel (1.36.0-1) ... 189s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 189s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 189s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 189s Setting up r-cran-munsell (0.5.0-2build1) ... 189s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 189s Setting up r-cran-r.oo (1.26.0-1) ... 189s Setting up texlive-bibtex-extra (2023.20240207-1) ... 189s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 189s Setting up r-cran-scales (1.3.0-1) ... 189s Setting up r-cran-memoise (2.0.1-1) ... 189s Setting up r-cran-promises (1.2.1+dfsg-1) ... 189s Setting up r-cran-htmltools (0.5.7-1) ... 189s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 189s Setting up r-bioc-xvector (0.42.0-1) ... 189s Setting up r-cran-sass (0.4.8+dfsg-1) ... 189s Setting up r-cran-r.utils (2.12.3-1) ... 189s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 189s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 189s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 189s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 189s Setting up r-cran-fontawesome (0.5.2-1) ... 189s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 189s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 189s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 189s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 189s Setting up r-bioc-hdf5array (1.30.1-1) ... 189s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 189s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 189s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 189s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 189s Setting up r-bioc-beachmat (2.18.1+ds-1) ... 189s Setting up r-bioc-genomicalignments (1.38.2-1) ... 189s Setting up r-cran-bookdown (0.37+dfsg-1) ... 189s Setting up r-bioc-rtracklayer (1.62.0-1) ... 189s Setting up r-bioc-bsgenome (1.70.2-1) ... 189s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 189s Setting up r-bioc-bsseq (1.38.0+dfsg-1) ... 189s Setting up r-bioc-dss (2.50.1+dfsg-1) ... 189s Setting up autopkgtest-satdep (0) ... 189s Processing triggers for man-db (2.12.0-3) ... 190s Processing triggers for install-info (7.1-3) ... 191s Processing triggers for libc-bin (2.39-0ubuntu2) ... 191s Processing triggers for tex-common (6.18) ... 191s Running updmap-sys. This may take some time... done. 191s Running mktexlsr /var/lib/texmf ... done. 191s Building format(s) --all. 228s This may take some time... done. 242s (Reading database ... 123484 files and directories currently installed.) 242s Removing autopkgtest-satdep (0) ... 244s autopkgtest [17:33:03]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 244s autopkgtest [17:33:03]: test pkg-r-autopkgtest: [----------------------- 245s Test: Try to load the R library DSS 246s 246s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 246s Copyright (C) 2024 The R Foundation for Statistical Computing 246s Platform: aarch64-unknown-linux-gnu (64-bit) 246s 246s R is free software and comes with ABSOLUTELY NO WARRANTY. 246s You are welcome to redistribute it under certain conditions. 246s Type 'license()' or 'licence()' for distribution details. 246s 246s R is a collaborative project with many contributors. 246s Type 'contributors()' for more information and 246s 'citation()' on how to cite R or R packages in publications. 246s 246s Type 'demo()' for some demos, 'help()' for on-line help, or 246s 'help.start()' for an HTML browser interface to help. 246s Type 'q()' to quit R. 246s 246s > library('DSS') 246s Loading required package: Biobase 246s Loading required package: BiocGenerics 246s 246s Attaching package: ‘BiocGenerics’ 246s 246s The following objects are masked from ‘package:stats’: 246s 246s IQR, mad, sd, var, xtabs 246s 246s The following objects are masked from ‘package:base’: 246s 246s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 246s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 246s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 246s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 246s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 246s table, tapply, union, unique, unsplit, which.max, which.min 246s 246s Welcome to Bioconductor 246s 246s Vignettes contain introductory material; view with 246s 'browseVignettes()'. To cite Bioconductor, see 246s 'citation("Biobase")', and for packages 'citation("pkgname")'. 246s 246s Loading required package: BiocParallel 247s Loading required package: bsseq 247s Loading required package: GenomicRanges 247s Loading required package: stats4 247s Loading required package: S4Vectors 247s 247s Attaching package: ‘S4Vectors’ 247s 247s The following object is masked from ‘package:utils’: 247s 247s findMatches 247s 247s The following objects are masked from ‘package:base’: 247s 247s expand.grid, I, unname 247s 247s Loading required package: IRanges 248s Loading required package: GenomeInfoDb 249s Loading required package: SummarizedExperiment 249s Loading required package: MatrixGenerics 249s Loading required package: matrixStats 249s 249s Attaching package: ‘matrixStats’ 249s 249s The following objects are masked from ‘package:Biobase’: 249s 249s anyMissing, rowMedians 249s 249s 249s Attaching package: ‘MatrixGenerics’ 249s 249s The following objects are masked from ‘package:matrixStats’: 249s 249s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 249s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 249s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 249s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 249s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 249s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 249s colWeightedMeans, colWeightedMedians, colWeightedSds, 249s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 249s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 249s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 249s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 249s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 249s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 249s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 249s rowWeightedSds, rowWeightedVars 249s 249s The following object is masked from ‘package:Biobase’: 249s 249s rowMedians 249s 258s Loading required package: parallel 258s > 258s > 258s Other tests are currently unsupported! 258s They will be progressively added. 259s autopkgtest [17:33:18]: test pkg-r-autopkgtest: -----------------------] 260s pkg-r-autopkgtest PASS 260s autopkgtest [17:33:19]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 260s autopkgtest [17:33:19]: @@@@@@@@@@@@@@@@@@@@ summary 260s pkg-r-autopkgtest PASS 278s Creating nova instance adt-noble-arm64-r-bioc-dss-20240316-172859-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...