0s autopkgtest [17:28:02]: starting date and time: 2024-03-16 17:28:02+0000
  0s autopkgtest [17:28:02]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [17:28:02]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xgh2s911/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-dirichletmultinomial --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-11.secgroup --name adt-noble-arm64-r-bioc-dirichletmultinomial-20240316-172802-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
112s autopkgtest [17:29:54]: testbed dpkg architecture: arm64
112s autopkgtest [17:29:54]: testbed apt version: 2.7.12
112s autopkgtest [17:29:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup
112s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
113s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB]
113s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB]
113s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
113s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
113s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
113s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
113s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
113s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
113s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB]
113s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
113s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB]
113s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
115s Fetched 9060 kB in 2s (5556 kB/s)
115s Reading package lists...
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
119s Calculating upgrade...
119s The following packages will be REMOVED:
119s   libglib2.0-0 libssl3
119s The following NEW packages will be installed:
119s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
119s The following packages have been kept back:
119s   curl
119s The following packages will be upgraded:
119s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
119s   ubuntu-minimal ubuntu-standard
119s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
119s Need to get 4613 kB of archives.
119s After this operation, 211 kB of additional disk space will be used.
119s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
120s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
120s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
120s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
120s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
120s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
120s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
120s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
120s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
120s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
120s Fetched 4613 kB in 1s (6479 kB/s)
121s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
121s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
121s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
121s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
121s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
121s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
121s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
121s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
121s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
121s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
121s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
121s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
121s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
121s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
121s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
121s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
121s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
121s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
121s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
121s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
121s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
121s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
121s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
121s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
121s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
121s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
121s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
121s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
121s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
121s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
121s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
121s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
121s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
121s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
121s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
121s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
121s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
121s  fwupd depends on libglib2.0-0 (>= 2.79.0).
121s  bolt depends on libglib2.0-0 (>= 2.56.0).
121s 
121s (Reading database ... 
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121s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
121s Selecting previously unselected package libglib2.0-0t64:arm64.
121s (Reading database ... 
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(Reading database ... 74733 files and directories currently installed.)
121s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
121s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
121s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
121s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
121s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
121s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
121s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
121s  wget depends on libssl3 (>= 3.0.0).
121s  u-boot-tools depends on libssl3 (>= 3.0.0).
121s  tnftp depends on libssl3 (>= 3.0.0).
121s  tcpdump depends on libssl3 (>= 3.0.0).
121s  systemd-resolved depends on libssl3 (>= 3.0.0).
121s  systemd depends on libssl3 (>= 3.0.0).
121s  sudo depends on libssl3 (>= 3.0.0).
121s  sbsigntool depends on libssl3 (>= 3.0.0).
121s  rsync depends on libssl3 (>= 3.0.0).
121s  python3-cryptography depends on libssl3 (>= 3.0.0).
121s  openssh-server depends on libssl3 (>= 3.0.10).
121s  openssh-client depends on libssl3 (>= 3.0.10).
121s  mtd-utils depends on libssl3 (>= 3.0.0).
121s  mokutil depends on libssl3 (>= 3.0.0).
121s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
121s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
121s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
121s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
121s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
121s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
121s  libnvme1 depends on libssl3 (>= 3.0.0).
121s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
121s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
121s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
121s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
121s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
121s  kmod depends on libssl3 (>= 3.0.0).
121s  dhcpcd-base depends on libssl3 (>= 3.0.0).
121s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
121s 
121s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
121s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
121s Selecting previously unselected package libssl3t64:arm64.
121s (Reading database ... 
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(Reading database ... 74747 files and directories currently installed.)
121s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
121s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
122s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
122s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
122s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ...
122s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
122s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ...
122s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
122s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ...
122s Unpacking ubuntu-minimal (1.536) over (1.535) ...
122s Selecting previously unselected package xdg-user-dirs.
122s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ...
122s Unpacking xdg-user-dirs (0.18-1) ...
122s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ...
122s Unpacking ubuntu-standard (1.536) over (1.535) ...
122s Setting up ubuntu-minimal (1.536) ...
122s Setting up xdg-user-dirs (0.18-1) ...
122s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
122s Setting up libtirpc-common (1.3.4+ds-1.1) ...
122s Setting up ubuntu-standard (1.536) ...
122s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
122s No schema files found: doing nothing.
122s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
122s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
122s Setting up openssl (3.0.13-0ubuntu1) ...
122s Setting up readline-common (8.2-3.1) ...
122s Processing triggers for man-db (2.12.0-3) ...
123s Processing triggers for install-info (7.1-3) ...
123s Processing triggers for libc-bin (2.39-0ubuntu2) ...
123s Reading package lists...
123s Building dependency tree...
123s Reading state information...
124s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
125s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
125s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
125s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
125s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
126s Reading package lists...
126s Reading package lists...
127s Building dependency tree...
127s Reading state information...
127s Calculating upgrade...
128s The following packages have been kept back:
128s   curl
128s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
128s Reading package lists...
128s Building dependency tree...
128s Reading state information...
129s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
133s autopkgtest [17:30:15]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
134s autopkgtest [17:30:16]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-dirichletmultinomial
138s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dirichletmultinomial 1.44.0-1 (dsc) [2283 B]
138s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dirichletmultinomial 1.44.0-1 (tar) [438 kB]
138s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dirichletmultinomial 1.44.0-1 (diff) [2804 B]
138s gpgv: Signature made Thu Nov 30 09:27:48 2023 UTC
138s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
138s gpgv:                issuer "tille@debian.org"
138s gpgv: Can't check signature: No public key
138s dpkg-source: warning: cannot verify inline signature for ./r-bioc-dirichletmultinomial_1.44.0-1.dsc: no acceptable signature found
138s autopkgtest [17:30:20]: testing package r-bioc-dirichletmultinomial version 1.44.0-1
139s autopkgtest [17:30:21]: build not needed
140s autopkgtest [17:30:22]: test pkg-r-autopkgtest: preparing testbed
142s Reading package lists...
142s Building dependency tree...
142s Reading state information...
142s Starting pkgProblemResolver with broken count: 0
142s Starting 2 pkgProblemResolver with broken count: 0
142s Done
143s The following additional packages will be installed:
143s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
143s   curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core
143s   fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu
143s   gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran
143s   gfortran-13 gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu
143s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libbz2-dev
143s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64
143s   libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev
143s   libgfortran5 libgomp1 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b
143s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
143s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
143s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
143s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
143s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
143s   libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64
143s   libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev
143s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6
143s   libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1
143s   libxss1 libxt6t64 linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf
143s   pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics
143s   r-bioc-dirichletmultinomial r-bioc-iranges r-bioc-s4vectors r-cran-lattice
143s   r-cran-mass r-cran-rcolorbrewer r-cran-xtable rpcsvc-proto unzip x11-common
143s   xdg-utils zip zlib1g-dev
143s Suggested packages:
143s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
143s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
143s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
143s   liblapack-doc glibc-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info
143s   | gsl-ref-html icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
143s   tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
143s   texlive-base texlive-latex-base texlive-plain-generic
143s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
143s   texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
143s   r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools
143s   r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit
143s   r-bioc-xvector r-bioc-genomicalignments r-bioc-genomicfeatures
143s   r-bioc-biocstyle r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread
143s   r-bioc-graph r-cran-data.table r-cran-knitr r-cran-plm r-cran-zoo
143s   r-cran-survival
143s Recommended packages:
143s   bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended
143s   r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
143s   x11-utils x11-xserver-utils
143s The following packages will be REMOVED:
143s   libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3
143s The following NEW packages will be installed:
143s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
143s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
143s   fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu
143s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
143s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
143s   gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev
143s   libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev
143s   libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
143s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libgsl27
143s   libgslcblas0 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1
143s   libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
143s   liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
143s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
143s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
143s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
143s   libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0
143s   libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6
143s   libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7
143s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
143s   linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core
143s   r-base-dev r-bioc-biocgenerics r-bioc-dirichletmultinomial r-bioc-iranges
143s   r-bioc-s4vectors r-cran-lattice r-cran-mass r-cran-rcolorbrewer
143s   r-cran-xtable rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
143s The following packages will be upgraded:
143s   curl
143s 1 upgraded, 121 newly installed, 5 to remove and 0 not upgraded.
143s Need to get 140 MB/140 MB of archives.
143s After this operation, 434 MB of additional disk space will be used.
143s Get:1 /tmp/autopkgtest.oVuxcS/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [760 B]
143s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB]
144s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB]
144s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB]
144s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB]
144s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB]
144s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB]
144s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
144s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
144s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
144s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB]
144s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
144s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
144s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
144s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
144s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
144s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
144s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
144s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
144s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
144s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
144s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
144s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
144s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
144s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
144s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
144s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
144s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
144s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
144s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
145s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
145s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
145s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
145s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
145s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
145s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
145s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
145s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
145s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
145s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
145s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
145s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
145s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
145s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
145s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
145s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
145s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
145s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
145s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
146s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
146s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
146s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
146s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
146s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
146s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
146s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
146s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
146s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
146s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
146s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
146s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
146s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
146s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
146s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
146s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 libgslcblas0 arm64 2.7.1+dfsg-6ubuntu1 [72.5 kB]
146s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 libgsl27 arm64 2.7.1+dfsg-6ubuntu1 [912 kB]
146s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
146s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
146s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
146s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
146s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
146s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
146s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
146s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
146s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
146s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
146s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
146s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
146s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
146s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
146s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
146s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
146s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
146s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
146s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
146s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
146s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
146s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
146s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
146s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
146s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
146s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
146s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB]
146s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB]
146s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
146s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
147s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
147s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
147s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
147s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
147s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
147s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
147s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
147s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB]
147s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
147s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
147s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
147s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
147s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
147s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
147s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB]
148s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
148s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B]
148s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
148s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
148s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB]
148s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB]
148s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dirichletmultinomial arm64 1.44.0-1 [613 kB]
148s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB]
148s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB]
148s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
148s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
149s Preconfiguring packages ...
150s Fetched 140 MB in 5s (27.5 MB/s)
150s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested:
150s  wget depends on libpsl5 (>= 0.16.0).
150s  libcurl4:arm64 depends on libpsl5 (>= 0.16.0).
150s  libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0).
150s 
150s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74774 files and directories currently installed.)
150s Removing libpsl5:arm64 (0.21.2-1build1) ...
150s Selecting previously unselected package libpsl5t64:arm64.
150s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74769 files and directories currently installed.)
150s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ...
150s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ...
150s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ...
150s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
150s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74775 files and directories currently installed.)
150s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ...
150s Selecting previously unselected package libcurl4t64:arm64.
150s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74770 files and directories currently installed.)
150s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ...
150s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
150s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested:
150s  libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2).
150s  libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1).
150s 
150s (Reading database ... 
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(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74776 files and directories currently installed.)
150s Removing libpng16-16:arm64 (1.6.43-1) ...
150s Selecting previously unselected package libpng16-16t64:arm64.
150s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74766 files and directories currently installed.)
150s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ...
150s Unpacking libpng16-16t64:arm64 (1.6.43-3) ...
151s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested:
151s  parted depends on libreadline8 (>= 6.0).
151s  libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
151s  gpgsm depends on libreadline8 (>= 6.0).
151s  gpgconf depends on libreadline8 (>= 6.0).
151s  gpg depends on libreadline8 (>= 6.0).
151s  gawk depends on libreadline8 (>= 6.0).
151s  fdisk depends on libreadline8 (>= 6.0).
151s 
151s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74777 files and directories currently installed.)
151s Removing libreadline8:arm64 (8.2-3) ...
151s Selecting previously unselected package libreadline8t64:arm64.
151s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
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(Reading database ... 25%
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151s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ...
151s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
151s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
151s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
151s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
151s Unpacking libreadline8t64:arm64 (8.2-3.1) ...
151s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested:
151s  lsof depends on libtirpc3 (>= 1.0.2).
151s  libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
151s  libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2).
151s  libnsl2:arm64 depends on libtirpc3 (>= 1.0.2).
151s  iproute2 depends on libtirpc3 (>= 1.0.2).
151s 
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151s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ...
151s Selecting previously unselected package libtirpc3t64:arm64.
151s (Reading database ... 
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151s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ...
151s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
151s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
151s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
151s Selecting previously unselected package libc-dev-bin.
151s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
151s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
151s Selecting previously unselected package linux-libc-dev:arm64.
151s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ...
151s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
151s Selecting previously unselected package libcrypt-dev:arm64.
151s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
151s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
151s Selecting previously unselected package libtirpc-dev:arm64.
151s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ...
151s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
152s Selecting previously unselected package libnsl-dev:arm64.
152s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ...
152s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
152s Selecting previously unselected package rpcsvc-proto.
152s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
152s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
152s Selecting previously unselected package libc6-dev:arm64.
152s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ...
152s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
152s Selecting previously unselected package libisl23:arm64.
152s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ...
152s Unpacking libisl23:arm64 (0.26-3) ...
152s Selecting previously unselected package libmpc3:arm64.
152s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ...
152s Unpacking libmpc3:arm64 (1.3.1-1) ...
152s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
152s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
152s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
152s Selecting previously unselected package cpp-13.
152s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
152s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
152s Selecting previously unselected package cpp-aarch64-linux-gnu.
152s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
152s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
152s Selecting previously unselected package cpp.
152s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
152s Unpacking cpp (4:13.2.0-7ubuntu1) ...
152s Selecting previously unselected package libcc1-0:arm64.
152s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
152s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
153s Selecting previously unselected package libgomp1:arm64.
153s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
153s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
153s Selecting previously unselected package libitm1:arm64.
153s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ...
153s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
153s Selecting previously unselected package libatomic1:arm64.
153s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
153s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
153s Selecting previously unselected package libasan8:arm64.
153s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ...
153s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
153s Selecting previously unselected package liblsan0:arm64.
153s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
153s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
153s Selecting previously unselected package libtsan2:arm64.
153s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
153s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
153s Selecting previously unselected package libubsan1:arm64.
153s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
153s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
153s Selecting previously unselected package libhwasan0:arm64.
153s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
153s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
153s Selecting previously unselected package libgcc-13-dev:arm64.
153s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
153s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
153s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
153s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
153s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
154s Selecting previously unselected package gcc-13.
154s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
154s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
154s Selecting previously unselected package gcc-aarch64-linux-gnu.
154s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
154s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
154s Selecting previously unselected package gcc.
154s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
154s Unpacking gcc (4:13.2.0-7ubuntu1) ...
154s Selecting previously unselected package libstdc++-13-dev:arm64.
154s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
154s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
154s Selecting previously unselected package g++-13-aarch64-linux-gnu.
154s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
154s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
154s Selecting previously unselected package g++-13.
154s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ...
154s Unpacking g++-13 (13.2.0-17ubuntu2) ...
154s Selecting previously unselected package g++-aarch64-linux-gnu.
154s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
154s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
154s Selecting previously unselected package g++.
154s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
154s Unpacking g++ (4:13.2.0-7ubuntu1) ...
154s Selecting previously unselected package build-essential.
154s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ...
154s Unpacking build-essential (12.10ubuntu1) ...
154s Selecting previously unselected package dctrl-tools.
154s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ...
154s Unpacking dctrl-tools (2.24-3build2) ...
154s Selecting previously unselected package fonts-dejavu-mono.
154s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
154s Unpacking fonts-dejavu-mono (2.37-8) ...
155s Selecting previously unselected package fonts-dejavu-core.
155s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
155s Unpacking fonts-dejavu-core (2.37-8) ...
155s Selecting previously unselected package fontconfig-config.
155s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
155s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
155s Selecting previously unselected package libfontconfig1:arm64.
155s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
155s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
155s Selecting previously unselected package fontconfig.
155s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
155s Unpacking fontconfig (2.15.0-1ubuntu1) ...
155s Selecting previously unselected package libgfortran5:arm64.
156s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
156s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
156s Selecting previously unselected package libgfortran-13-dev:arm64.
156s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ...
156s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
156s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
156s Preparing to unpack .../042-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
156s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
156s Selecting previously unselected package gfortran-13.
156s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_arm64.deb ...
156s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
156s Selecting previously unselected package gfortran-aarch64-linux-gnu.
156s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
156s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
156s Selecting previously unselected package gfortran.
156s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ...
156s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
156s Selecting previously unselected package icu-devtools.
156s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_arm64.deb ...
156s Unpacking icu-devtools (74.2-1ubuntu1) ...
156s Selecting previously unselected package libblas3:arm64.
156s Preparing to unpack .../047-libblas3_3.12.0-3_arm64.deb ...
156s Unpacking libblas3:arm64 (3.12.0-3) ...
156s Selecting previously unselected package libblas-dev:arm64.
156s Preparing to unpack .../048-libblas-dev_3.12.0-3_arm64.deb ...
156s Unpacking libblas-dev:arm64 (3.12.0-3) ...
156s Selecting previously unselected package libbz2-dev:arm64.
156s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ...
156s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
156s Selecting previously unselected package libpixman-1-0:arm64.
157s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_arm64.deb ...
157s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
157s Selecting previously unselected package libxcb-render0:arm64.
157s Preparing to unpack .../051-libxcb-render0_1.15-1_arm64.deb ...
157s Unpacking libxcb-render0:arm64 (1.15-1) ...
157s Selecting previously unselected package libxcb-shm0:arm64.
157s Preparing to unpack .../052-libxcb-shm0_1.15-1_arm64.deb ...
157s Unpacking libxcb-shm0:arm64 (1.15-1) ...
157s Selecting previously unselected package libxrender1:arm64.
157s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
157s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
157s Selecting previously unselected package libcairo2:arm64.
157s Preparing to unpack .../054-libcairo2_1.18.0-1_arm64.deb ...
157s Unpacking libcairo2:arm64 (1.18.0-1) ...
157s Selecting previously unselected package libdatrie1:arm64.
157s Preparing to unpack .../055-libdatrie1_0.2.13-3_arm64.deb ...
157s Unpacking libdatrie1:arm64 (0.2.13-3) ...
157s Selecting previously unselected package libdeflate0:arm64.
157s Preparing to unpack .../056-libdeflate0_1.19-1_arm64.deb ...
157s Unpacking libdeflate0:arm64 (1.19-1) ...
157s Selecting previously unselected package libgraphite2-3:arm64.
157s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_arm64.deb ...
157s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
157s Selecting previously unselected package libgslcblas0:arm64.
157s Preparing to unpack .../058-libgslcblas0_2.7.1+dfsg-6ubuntu1_arm64.deb ...
157s Unpacking libgslcblas0:arm64 (2.7.1+dfsg-6ubuntu1) ...
157s Selecting previously unselected package libgsl27:arm64.
157s Preparing to unpack .../059-libgsl27_2.7.1+dfsg-6ubuntu1_arm64.deb ...
157s Unpacking libgsl27:arm64 (2.7.1+dfsg-6ubuntu1) ...
157s Selecting previously unselected package libharfbuzz0b:arm64.
157s Preparing to unpack .../060-libharfbuzz0b_8.3.0-2_arm64.deb ...
157s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
157s Selecting previously unselected package x11-common.
157s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu2_all.deb ...
157s Unpacking x11-common (1:7.7+23ubuntu2) ...
157s Selecting previously unselected package libice6:arm64.
157s Preparing to unpack .../062-libice6_2%3a1.0.10-1build2_arm64.deb ...
157s Unpacking libice6:arm64 (2:1.0.10-1build2) ...
157s Selecting previously unselected package libicu-dev:arm64.
157s Preparing to unpack .../063-libicu-dev_74.2-1ubuntu1_arm64.deb ...
157s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ...
158s Selecting previously unselected package libjpeg-turbo8:arm64.
158s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
158s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
158s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
158s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ...
158s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
158s Selecting previously unselected package libjpeg8:arm64.
158s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ...
158s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
158s Selecting previously unselected package libjpeg8-dev:arm64.
158s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
158s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
158s Selecting previously unselected package libjpeg-dev:arm64.
158s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
158s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
158s Selecting previously unselected package liblapack3:arm64.
158s Preparing to unpack .../069-liblapack3_3.12.0-3_arm64.deb ...
158s Unpacking liblapack3:arm64 (3.12.0-3) ...
158s Selecting previously unselected package liblapack-dev:arm64.
158s Preparing to unpack .../070-liblapack-dev_3.12.0-3_arm64.deb ...
158s Unpacking liblapack-dev:arm64 (3.12.0-3) ...
158s Selecting previously unselected package liblerc4:arm64.
158s Preparing to unpack .../071-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
158s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
158s Selecting previously unselected package libncurses-dev:arm64.
158s Preparing to unpack .../072-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ...
158s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
158s Selecting previously unselected package libthai-data.
158s Preparing to unpack .../073-libthai-data_0.1.29-2_all.deb ...
158s Unpacking libthai-data (0.1.29-2) ...
158s Selecting previously unselected package libthai0:arm64.
158s Preparing to unpack .../074-libthai0_0.1.29-2_arm64.deb ...
158s Unpacking libthai0:arm64 (0.1.29-2) ...
158s Selecting previously unselected package libpango-1.0-0:arm64.
158s Preparing to unpack .../075-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
158s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ...
158s Selecting previously unselected package libpangoft2-1.0-0:arm64.
158s Preparing to unpack .../076-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
158s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
159s Selecting previously unselected package libpangocairo-1.0-0:arm64.
159s Preparing to unpack .../077-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
159s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
159s Selecting previously unselected package libpaper1:arm64.
159s Preparing to unpack .../078-libpaper1_1.1.29_arm64.deb ...
159s Unpacking libpaper1:arm64 (1.1.29) ...
159s Selecting previously unselected package libpaper-utils.
159s Preparing to unpack .../079-libpaper-utils_1.1.29_arm64.deb ...
159s Unpacking libpaper-utils (1.1.29) ...
159s Selecting previously unselected package libpcre2-16-0:arm64.
159s Preparing to unpack .../080-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ...
159s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
159s Selecting previously unselected package libpcre2-32-0:arm64.
159s Preparing to unpack .../081-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ...
159s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
159s Selecting previously unselected package libpcre2-posix3:arm64.
159s Preparing to unpack .../082-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ...
159s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
159s Selecting previously unselected package libpcre2-dev:arm64.
159s Preparing to unpack .../083-libpcre2-dev_10.42-4ubuntu1_arm64.deb ...
159s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ...
159s Selecting previously unselected package libpkgconf3:arm64.
160s Preparing to unpack .../084-libpkgconf3_1.8.1-2_arm64.deb ...
160s Unpacking libpkgconf3:arm64 (1.8.1-2) ...
160s Selecting previously unselected package zlib1g-dev:arm64.
161s Preparing to unpack .../085-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ...
161s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
161s Selecting previously unselected package libpng-dev:arm64.
161s Preparing to unpack .../086-libpng-dev_1.6.43-3_arm64.deb ...
161s Unpacking libpng-dev:arm64 (1.6.43-3) ...
161s Selecting previously unselected package libreadline-dev:arm64.
161s Preparing to unpack .../087-libreadline-dev_8.2-3.1_arm64.deb ...
161s Unpacking libreadline-dev:arm64 (8.2-3.1) ...
161s Selecting previously unselected package libsharpyuv0:arm64.
162s Preparing to unpack .../088-libsharpyuv0_1.3.2-0.4_arm64.deb ...
162s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
162s Selecting previously unselected package libsm6:arm64.
162s Preparing to unpack .../089-libsm6_2%3a1.2.3-1build2_arm64.deb ...
162s Unpacking libsm6:arm64 (2:1.2.3-1build2) ...
162s Selecting previously unselected package libtcl8.6:arm64.
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168s 
168s Creating config file /etc/R/Renviron with new version
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168s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
168s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
168s Setting up r-bioc-biocgenerics (0.48.1-2) ...
168s Setting up r-cran-mass (7.3-60.0.1-1) ...
168s Setting up r-cran-xtable (1:1.8-4-2) ...
168s Setting up gfortran (4:13.2.0-7ubuntu1) ...
168s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
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168s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
168s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
168s Setting up g++ (4:13.2.0-7ubuntu1) ...
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168s Setting up r-bioc-iranges (2.36.0-1) ...
168s Setting up r-base-dev (4.3.3-2build1) ...
168s Setting up r-bioc-dirichletmultinomial (1.44.0-1) ...
168s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
168s Setting up autopkgtest-satdep (0) ...
168s Processing triggers for man-db (2.12.0-3) ...
169s Processing triggers for install-info (7.1-3) ...
169s Processing triggers for libc-bin (2.39-0ubuntu2) ...
176s (Reading database ... 80797 files and directories currently installed.)
176s Removing autopkgtest-satdep (0) ...
178s autopkgtest [17:31:00]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
178s autopkgtest [17:31:00]: test pkg-r-autopkgtest: [-----------------------
180s Test: Try to load the R library DirichletMultinomial
185s 
185s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
185s Copyright (C) 2024 The R Foundation for Statistical Computing
185s Platform: aarch64-unknown-linux-gnu (64-bit)
185s 
185s R is free software and comes with ABSOLUTELY NO WARRANTY.
185s You are welcome to redistribute it under certain conditions.
185s Type 'license()' or 'licence()' for distribution details.
185s 
185s R is a collaborative project with many contributors.
185s Type 'contributors()' for more information and
185s 'citation()' on how to cite R or R packages in publications.
185s 
185s Type 'demo()' for some demos, 'help()' for on-line help, or
185s 'help.start()' for an HTML browser interface to help.
185s Type 'q()' to quit R.
185s 
187s > library('DirichletMultinomial')
187s Loading required package: S4Vectors
187s Loading required package: stats4
187s Loading required package: BiocGenerics
187s 
187s Attaching package: ‘BiocGenerics’
187s 
187s The following objects are masked from ‘package:stats’:
187s 
187s     IQR, mad, sd, var, xtabs
187s 
187s The following objects are masked from ‘package:base’:
187s 
187s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
187s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
187s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
187s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
187s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
187s     table, tapply, union, unique, unsplit, which.max, which.min
187s 
188s 
188s Attaching package: ‘S4Vectors’
188s 
188s The following object is masked from ‘package:utils’:
188s 
188s     findMatches
188s 
188s The following objects are masked from ‘package:base’:
188s 
188s     expand.grid, I, unname
188s 
188s Loading required package: IRanges
189s > 
189s > 
189s Other tests are currently unsupported!
189s They will be progressively added.
190s autopkgtest [17:31:12]: test pkg-r-autopkgtest: -----------------------]
191s autopkgtest [17:31:13]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
191s pkg-r-autopkgtest    PASS
191s autopkgtest [17:31:13]: @@@@@@@@@@@@@@@@@@@@ summary
191s pkg-r-autopkgtest    PASS
203s Creating nova instance adt-noble-arm64-r-bioc-dirichletmultinomial-20240316-172802-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...