0s autopkgtest [17:27:54]: starting date and time: 2024-03-16 17:27:54+0000 0s autopkgtest [17:27:54]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:27:54]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._yvc4gwy/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-dexseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-1.secgroup --name adt-noble-arm64-r-bioc-dexseq-20240316-172754-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 99s autopkgtest [17:29:33]: testbed dpkg architecture: arm64 99s autopkgtest [17:29:33]: testbed apt version: 2.7.12 99s autopkgtest [17:29:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 100s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 100s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 100s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 100s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 101s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 101s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 101s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 101s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 101s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 101s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 101s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 101s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 101s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 102s Fetched 9060 kB in 2s (5400 kB/s) 103s Reading package lists... 105s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Calculating upgrade... 107s The following packages will be REMOVED: 107s libglib2.0-0 libssl3 107s The following NEW packages will be installed: 107s libglib2.0-0t64 libssl3t64 xdg-user-dirs 107s The following packages have been kept back: 107s curl 107s The following packages will be upgraded: 107s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 107s ubuntu-minimal ubuntu-standard 107s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 107s Need to get 4613 kB of archives. 107s After this operation, 211 kB of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 107s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 107s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 107s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 108s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 108s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 108s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 108s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 108s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 108s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 108s Fetched 4613 kB in 1s (6335 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 108s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 108s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 109s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 109s udisks2 depends on libglib2.0-0 (>= 2.77.0). 109s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 109s python3-gi depends on libglib2.0-0 (>= 2.77.0). 109s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 109s netplan.io depends on libglib2.0-0 (>= 2.70.0). 109s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 109s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 109s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 109s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 109s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 109s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 109s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 109s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 109s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 109s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 109s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 109s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 109s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 109s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 109s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 109s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 109s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 109s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 109s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 109s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 109s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 109s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 109s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 109s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 109s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 109s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 109s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 109s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 109s fwupd depends on libglib2.0-0 (>= 2.79.0). 109s bolt depends on libglib2.0-0 (>= 2.56.0). 109s 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 109s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 109s Selecting previously unselected package libglib2.0-0t64:arm64. 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 109s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 109s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 109s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 109s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 109s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 109s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 109s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 109s wget depends on libssl3 (>= 3.0.0). 109s u-boot-tools depends on libssl3 (>= 3.0.0). 109s tnftp depends on libssl3 (>= 3.0.0). 109s tcpdump depends on libssl3 (>= 3.0.0). 109s systemd-resolved depends on libssl3 (>= 3.0.0). 109s systemd depends on libssl3 (>= 3.0.0). 109s sudo depends on libssl3 (>= 3.0.0). 109s sbsigntool depends on libssl3 (>= 3.0.0). 109s rsync depends on libssl3 (>= 3.0.0). 109s python3-cryptography depends on libssl3 (>= 3.0.0). 109s openssh-server depends on libssl3 (>= 3.0.10). 109s openssh-client depends on libssl3 (>= 3.0.10). 109s mtd-utils depends on libssl3 (>= 3.0.0). 109s mokutil depends on libssl3 (>= 3.0.0). 109s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 109s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 109s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 109s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 109s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 109s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 109s libnvme1 depends on libssl3 (>= 3.0.0). 109s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 109s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 109s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 109s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 109s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 109s kmod depends on libssl3 (>= 3.0.0). 109s dhcpcd-base depends on libssl3 (>= 3.0.0). 109s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 109s 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 110s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 110s Selecting previously unselected package libssl3t64:arm64. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 110s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 110s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 112s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 113s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 113s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 113s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 113s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 113s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 114s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 114s Unpacking ubuntu-minimal (1.536) over (1.535) ... 114s Selecting previously unselected package xdg-user-dirs. 114s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 114s Unpacking xdg-user-dirs (0.18-1) ... 114s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 114s Unpacking ubuntu-standard (1.536) over (1.535) ... 114s Setting up ubuntu-minimal (1.536) ... 114s Setting up xdg-user-dirs (0.18-1) ... 114s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 114s Setting up libtirpc-common (1.3.4+ds-1.1) ... 114s Setting up ubuntu-standard (1.536) ... 114s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 114s No schema files found: doing nothing. 114s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 114s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 114s Setting up openssl (3.0.13-0ubuntu1) ... 114s Setting up readline-common (8.2-3.1) ... 114s Processing triggers for man-db (2.12.0-3) ... 115s Processing triggers for install-info (7.1-3) ... 115s Processing triggers for libc-bin (2.39-0ubuntu2) ... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 116s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 117s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 117s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 117s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 118s Reading package lists... 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s Calculating upgrade... 119s The following packages have been kept back: 119s curl 119s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 119s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 125s autopkgtest [17:29:59]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 125s autopkgtest [17:29:59]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-dexseq 127s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dexseq 1.48.0+dfsg-1 (dsc) [2415 B] 127s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dexseq 1.48.0+dfsg-1 (tar) [50.4 kB] 127s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-dexseq 1.48.0+dfsg-1 (diff) [2920 B] 128s gpgv: Signature made Fri Dec 1 06:39:45 2023 UTC 128s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 128s gpgv: issuer "tillea@rki.de" 128s gpgv: Can't check signature: No public key 128s dpkg-source: warning: cannot verify inline signature for ./r-bioc-dexseq_1.48.0+dfsg-1.dsc: no acceptable signature found 129s autopkgtest [17:30:03]: testing package r-bioc-dexseq version 1.48.0+dfsg-1 129s autopkgtest [17:30:03]: build not needed 130s autopkgtest [17:30:04]: test pkg-r-autopkgtest: preparing testbed 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s Starting pkgProblemResolver with broken count: 0 133s Starting 2 pkgProblemResolver with broken count: 0 133s Done 134s The following additional packages will be installed: 134s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 134s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 134s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 134s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 134s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 134s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 134s gfortran-aarch64-linux-gnu hdf5-helpers icu-devtools javascript-common 134s libaec-dev libaec0 libasan8 libatomic1 libbibtex-parser-perl libblas-dev 134s libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin 134s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 134s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 134s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 134s libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 134s libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 libicu-dev 134s libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 134s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 134s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 134s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 134s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 134s libjs-popper.js libjs-prettify libjs-sifter.js 134s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 134s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 134s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 134s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 134s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 134s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 134s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 134s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 134s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 134s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 134s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 134s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 134s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 134s r-bioc-annotate r-bioc-annotationdbi r-bioc-beachmat r-bioc-biobase 134s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 134s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 134s r-bioc-delayedmatrixstats r-bioc-deseq2 r-bioc-dexseq r-bioc-genefilter 134s r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 134s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 134s r-bioc-glmgampoi r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest 134s r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 134s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 134s r-bioc-s4vectors r-bioc-singlecellexperiment r-bioc-sparsearray 134s r-bioc-sparsematrixstats r-bioc-summarizedexperiment r-bioc-xvector 134s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 134s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 134s r-cran-bookdown r-cran-brew r-cran-brio r-cran-bslib r-cran-cachem 134s r-cran-callr r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark 134s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 134s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 134s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 134s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 134s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 134s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-hwriter 134s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 134s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 134s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 134s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 134s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 134s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 134s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 134s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 134s r-cran-rcpparmadillo r-cran-rcurl r-cran-rematch2 r-cran-restfulr 134s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-roxygen2 r-cran-rprojroot 134s r-cran-rsqlite r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 134s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 134s r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr 134s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite 134s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 134s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 134s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 134s xdg-utils zip zlib1g-dev 134s Suggested packages: 134s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 134s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 134s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 134s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 134s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 134s libboost-context1.83-dev libboost-contract1.83-dev 134s libboost-coroutine1.83-dev libboost-date-time1.83-dev 134s libboost-exception1.83-dev libboost-fiber1.83-dev 134s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 134s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 134s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 134s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 134s libboost-numpy1.83-dev libboost-program-options1.83-dev 134s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 134s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 134s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 134s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 134s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 134s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 134s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 134s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 134s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 134s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 134s librsvg2-bin groff ghc php python ruby libjs-katex 134s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 134s r-base-html texlive-plain-generic texlive-fonts-recommended 134s texlive-fonts-extra texlive-extra-utils texinfo r-bioc-go.db 134s r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-cran-rcmdcheck r-bioc-all 134s r-bioc-affy r-cran-foreach r-cran-bbmisc r-cran-doparallel 134s r-bioc-variantannotation r-bioc-shortread r-cran-batchtools 134s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 134s r-cran-lobstr r-cran-profmem r-cran-pheatmap r-bioc-tximport r-bioc-tximeta 134s r-bioc-tximportdata r-cran-readr r-cran-pbapply r-cran-class r-cran-r.utils 134s r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown 134s r-bioc-gviz r-bioc-annotationhub r-cran-zoo r-bioc-limma r-cran-bench 134s r-bioc-scran r-bioc-experimenthub r-cran-tinytest r-bioc-scrnaseq 134s r-cran-rtsne r-cran-ff r-cran-covr r-cran-spelling r-cran-kernsmooth 134s r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg 134s r-cran-viridis r-cran-rstudioapi r-cran-rmysql r-cran-lubridate 134s r-cran-magick r-cran-sf r-cran-getopt r-cran-interp r-cran-gam 134s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units 134s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-here 134s r-cran-plm debhelper ghostscript gv | postscript-viewer perl-tk xpdf 134s | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc 134s wp2latex 134s Recommended packages: 134s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 134s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 134s r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect 134s r-cran-testit r-cran-tufte r-cran-webshot r-cran-covr r-cran-thematic 134s r-cran-cliapp r-cran-mockery r-cran-whoami r-cran-bench r-cran-decor 134s r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-rpostgresql r-cran-gh 134s r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-hexbin 134s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 134s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 134s r-cran-vdiffr r-cran-cairo r-cran-markdown r-cran-jpeg r-cran-readr 134s r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 134s r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 134s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr 134s r-cran-webfakes r-cran-future r-cran-pingr r-cran-runit r-cran-usethis 134s r-cran-dygraphs r-cran-r.methodss3 r-cran-r.oo r-cran-dbitest r-cran-gert 134s r-cran-rvest r-cran-dichromat r-cran-data.table r-cran-formattable 134s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 134s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 134s x11-xserver-utils 134s The following packages will be REMOVED: 134s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 134s The following NEW packages will be installed: 134s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 134s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 134s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 134s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 134s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 134s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 134s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 134s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 134s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 134s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 134s libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 134s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 134s libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 134s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 134s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 134s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 134s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 134s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 134s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 134s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 134s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 134s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 134s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 134s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 134s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 134s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 134s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 134s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 134s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 134s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 134s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 134s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 134s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 134s r-bioc-annotate r-bioc-annotationdbi r-bioc-beachmat r-bioc-biobase 134s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 134s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 134s r-bioc-delayedmatrixstats r-bioc-deseq2 r-bioc-dexseq r-bioc-genefilter 134s r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 134s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 134s r-bioc-glmgampoi r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest 134s r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 134s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 134s r-bioc-s4vectors r-bioc-singlecellexperiment r-bioc-sparsearray 134s r-bioc-sparsematrixstats r-bioc-summarizedexperiment r-bioc-xvector 134s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 134s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 134s r-cran-bookdown r-cran-brew r-cran-brio r-cran-bslib r-cran-cachem 134s r-cran-callr r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark 134s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 134s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 134s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 134s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 134s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 134s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-hwriter 134s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 134s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 134s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 134s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 134s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 134s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 134s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 134s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 134s r-cran-rcpparmadillo r-cran-rcurl r-cran-rematch2 r-cran-restfulr 134s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-roxygen2 r-cran-rprojroot 134s r-cran-rsqlite r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 134s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 134s r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr 134s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite 134s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 134s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 134s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 134s xdg-utils zip zlib1g-dev 134s The following packages will be upgraded: 134s curl 134s 1 upgraded, 342 newly installed, 5 to remove and 0 not upgraded. 134s Need to get 474 MB/474 MB of archives. 134s After this operation, 1464 MB of additional disk space will be used. 134s Get:1 /tmp/autopkgtest.P2fysV/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [804 B] 134s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 135s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 135s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 135s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 135s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 135s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 135s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 135s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 135s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 135s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 135s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 135s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 135s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 135s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 135s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 135s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 135s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 135s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 135s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 135s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 135s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 135s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 135s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 135s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 135s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 135s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 135s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 135s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 135s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 135s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 136s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 136s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 136s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 136s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 136s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 136s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 136s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 136s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 136s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 136s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 136s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 136s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 136s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 136s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 136s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 136s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 136s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 136s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 136s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 137s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 137s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 137s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 137s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 137s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 137s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 137s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 hdf5-helpers arm64 1.10.10+repack-3ubuntu1 [15.5 kB] 137s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 137s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 137s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 137s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 137s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 137s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 137s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 137s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 137s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 137s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 137s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 137s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 137s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 137s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 137s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 137s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 137s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 137s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 137s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu7 [454 kB] 137s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 137s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 137s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 137s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 137s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 137s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 137s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-cpp-103-1 arm64 1.10.10+repack-3ubuntu1 [120 kB] 137s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-fortran-102 arm64 1.10.10+repack-3ubuntu1 [86.3 kB] 137s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 137s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.10+repack-3ubuntu1 [30.7 kB] 137s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-cpp-100 arm64 1.10.10+repack-3ubuntu1 [10.7 kB] 137s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 137s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 137s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 137s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 137s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 137s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 137s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 137s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl-dev arm64 3.0.13-0ubuntu1 [2335 kB] 137s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-dev arm64 1.10.10+repack-3ubuntu1 [3036 kB] 137s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 137s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 137s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 138s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 138s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 138s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 138s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 138s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 138s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 138s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 138s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 138s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 138s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 138s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 138s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 138s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 138s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 138s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 138s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 138s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 139s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 139s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 139s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 139s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 139s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 139s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 139s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 139s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 139s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 139s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 139s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 139s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 139s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 139s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 139s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 139s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 139s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 140s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 140s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 140s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 140s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 140s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 140s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 140s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 140s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 140s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 140s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 140s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 140s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 140s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 140s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 140s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 140s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 140s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 140s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 140s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 140s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 140s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 140s Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 140s Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 140s Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 140s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 141s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 141s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 141s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 141s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 141s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 141s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 141s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 142s Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 142s Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 142s Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 142s Get:169 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 142s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 142s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 142s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 142s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 142s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 142s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 142s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 142s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 142s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 142s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 142s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 142s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 142s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 142s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 142s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 142s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 142s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 142s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 142s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 142s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 142s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 142s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 142s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 142s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 142s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 142s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 142s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 142s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 142s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 142s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 142s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 142s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 142s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 142s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 142s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 143s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 143s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 143s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 143s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 144s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 144s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 144s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 144s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 144s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 144s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 144s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 144s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 144s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 144s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 144s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 144s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 144s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 144s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 144s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 144s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-beachmat arm64 2.18.1+ds-1 [1561 kB] 144s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 144s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 144s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 144s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 144s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 145s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 145s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 145s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 145s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 145s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 145s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 145s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 145s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 145s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 145s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 145s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 145s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 145s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 145s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 145s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 145s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 145s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 145s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 145s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 145s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 145s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 145s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 145s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 145s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 145s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 145s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 145s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 145s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 145s Get:258 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 145s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 145s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 145s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 145s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 145s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 145s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 145s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 145s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 145s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 145s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 145s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 145s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 145s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 145s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 145s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 145s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 146s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 146s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 146s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 146s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 146s Get:279 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 146s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 146s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 147s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 147s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 150s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 150s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 150s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 150s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 150s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 150s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 150s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsematrixstats arm64 1.14.0+dfsg-1 [815 kB] 150s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 150s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 150s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 150s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 150s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 150s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 150s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 150s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 150s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 150s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 150s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 150s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 150s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 150s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 150s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 151s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 151s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 151s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 151s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq2 arm64 1.42.0+dfsg-1 [1218 kB] 151s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 151s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 151s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 151s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 151s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-geneplotter all 1.80.0+dfsg-1 [1416 kB] 152s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 152s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 152s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dexseq all 1.48.0+dfsg-1 [464 kB] 152s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 152s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 152s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 152s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 153s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 153s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5lib arm64 1.24.2+dfsg-1 [96.1 kB] 153s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5filters arm64 1.14.1+dfsg-3 [135 kB] 153s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5 arm64 2.46.1+dfsg-1 [805 kB] 153s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-hdf5array arm64 1.30.1-1 [8757 kB] 153s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 154s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-glmgampoi arm64 1.14.3+dfsg-1 [1192 kB] 154s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brew all 1.0-10-1 [77.7 kB] 154s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 154s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 154s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 154s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 154s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 154s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 154s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 154s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 154s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 154s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 154s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 154s Get:341 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-roxygen2 arm64 7.3.1-1 [710 kB] 154s Get:342 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 154s Get:343 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 156s Preconfiguring packages ... 156s Fetched 474 MB in 20s (23.7 MB/s) 156s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 156s wget depends on libpsl5 (>= 0.16.0). 156s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 156s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 156s 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 156s Removing libpsl5:arm64 (0.21.2-1build1) ... 157s Selecting previously unselected package libpsl5t64:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 157s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 157s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 157s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 157s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 157s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 157s Selecting previously unselected package libcurl4t64:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 157s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 157s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 157s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 157s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 157s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 157s 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 157s Removing libpng16-16:arm64 (1.6.43-1) ... 157s Selecting previously unselected package libpng16-16t64:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 157s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 157s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 157s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 157s parted depends on libreadline8 (>= 6.0). 157s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 157s gpgsm depends on libreadline8 (>= 6.0). 157s gpgconf depends on libreadline8 (>= 6.0). 157s gpg depends on libreadline8 (>= 6.0). 157s gawk depends on libreadline8 (>= 6.0). 157s fdisk depends on libreadline8 (>= 6.0). 157s 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 157s Removing libreadline8:arm64 (8.2-3) ... 157s Selecting previously unselected package libreadline8t64:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 157s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 157s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 157s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 157s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 157s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 157s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 157s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 157s lsof depends on libtirpc3 (>= 1.0.2). 157s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 157s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 157s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 157s iproute2 depends on libtirpc3 (>= 1.0.2). 157s 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 157s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 158s Selecting previously unselected package libtirpc3t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 158s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 158s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 158s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 158s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 158s Selecting previously unselected package libc-dev-bin. 158s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 158s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 158s Selecting previously unselected package linux-libc-dev:arm64. 158s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 158s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 158s Selecting previously unselected package libcrypt-dev:arm64. 158s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 158s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 158s Selecting previously unselected package libtirpc-dev:arm64. 158s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 158s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 158s Selecting previously unselected package libnsl-dev:arm64. 158s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 158s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 158s Selecting previously unselected package rpcsvc-proto. 158s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 158s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 158s Selecting previously unselected package libc6-dev:arm64. 158s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 158s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 158s Selecting previously unselected package libisl23:arm64. 158s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 158s Unpacking libisl23:arm64 (0.26-3) ... 158s Selecting previously unselected package libmpc3:arm64. 158s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 158s Unpacking libmpc3:arm64 (1.3.1-1) ... 158s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 158s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 158s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 158s Selecting previously unselected package cpp-13. 158s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 158s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 158s Selecting previously unselected package cpp-aarch64-linux-gnu. 158s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 158s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 158s Selecting previously unselected package cpp. 159s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 159s Unpacking cpp (4:13.2.0-7ubuntu1) ... 159s Selecting previously unselected package libcc1-0:arm64. 159s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libgomp1:arm64. 159s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libitm1:arm64. 159s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libatomic1:arm64. 159s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libasan8:arm64. 159s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package liblsan0:arm64. 159s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libtsan2:arm64. 159s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libubsan1:arm64. 159s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libhwasan0:arm64. 159s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libgcc-13-dev:arm64. 159s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 159s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 159s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 159s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 159s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package gcc-13. 160s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 160s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package gcc-aarch64-linux-gnu. 160s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 160s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 160s Selecting previously unselected package gcc. 160s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 160s Unpacking gcc (4:13.2.0-7ubuntu1) ... 160s Selecting previously unselected package libstdc++-13-dev:arm64. 160s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 160s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package g++-13-aarch64-linux-gnu. 160s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 160s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package g++-13. 160s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 160s Unpacking g++-13 (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package g++-aarch64-linux-gnu. 160s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 160s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 160s Selecting previously unselected package g++. 160s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 160s Unpacking g++ (4:13.2.0-7ubuntu1) ... 160s Selecting previously unselected package build-essential. 160s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 160s Unpacking build-essential (12.10ubuntu1) ... 160s Selecting previously unselected package dctrl-tools. 160s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 160s Unpacking dctrl-tools (2.24-3build2) ... 160s Selecting previously unselected package fonts-dejavu-mono. 160s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 160s Unpacking fonts-dejavu-mono (2.37-8) ... 160s Selecting previously unselected package fonts-dejavu-core. 160s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 161s Unpacking fonts-dejavu-core (2.37-8) ... 161s Selecting previously unselected package fontconfig-config. 161s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 161s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 161s Selecting previously unselected package libfontconfig1:arm64. 161s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 161s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 161s Selecting previously unselected package fontconfig. 161s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 161s Unpacking fontconfig (2.15.0-1ubuntu1) ... 161s Selecting previously unselected package fonts-font-awesome. 161s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 161s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 161s Selecting previously unselected package fonts-glyphicons-halflings. 161s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 161s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 161s Selecting previously unselected package fonts-lmodern. 161s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 161s Unpacking fonts-lmodern (2.005-1) ... 161s Selecting previously unselected package fonts-mathjax. 161s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 161s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 162s Selecting previously unselected package libgfortran5:arm64. 162s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libgfortran-13-dev:arm64. 162s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 162s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 162s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 162s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 162s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 162s Selecting previously unselected package gfortran-13. 162s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 162s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 162s Selecting previously unselected package gfortran-aarch64-linux-gnu. 162s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 162s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 162s Selecting previously unselected package gfortran. 162s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 162s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 162s Selecting previously unselected package hdf5-helpers. 162s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_arm64.deb ... 162s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 162s Selecting previously unselected package icu-devtools. 162s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_arm64.deb ... 162s Unpacking icu-devtools (74.2-1ubuntu1) ... 162s Selecting previously unselected package javascript-common. 162s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 162s Unpacking javascript-common (11+nmu1) ... 162s Selecting previously unselected package libaec0:arm64. 162s Preparing to unpack .../053-libaec0_1.1.2-1_arm64.deb ... 162s Unpacking libaec0:arm64 (1.1.2-1) ... 162s Selecting previously unselected package libio-string-perl. 162s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 162s Unpacking libio-string-perl (1.08-4) ... 162s Selecting previously unselected package liblatex-tounicode-perl. 162s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 162s Unpacking liblatex-tounicode-perl (0.54-2) ... 162s Selecting previously unselected package libbibtex-parser-perl. 162s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 162s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 162s Selecting previously unselected package libblas3:arm64. 162s Preparing to unpack .../057-libblas3_3.12.0-3_arm64.deb ... 162s Unpacking libblas3:arm64 (3.12.0-3) ... 162s Selecting previously unselected package libblas-dev:arm64. 162s Preparing to unpack .../058-libblas-dev_3.12.0-3_arm64.deb ... 162s Unpacking libblas-dev:arm64 (3.12.0-3) ... 162s Selecting previously unselected package libsnappy1v5:arm64. 162s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_arm64.deb ... 162s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 162s Selecting previously unselected package libblosc1:arm64. 162s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_arm64.deb ... 162s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 162s Selecting previously unselected package libboost1.83-dev:arm64. 162s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 162s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 164s Selecting previously unselected package libboost-dev:arm64. 164s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 164s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 164s Selecting previously unselected package libbz2-dev:arm64. 164s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 164s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 164s Selecting previously unselected package libpixman-1-0:arm64. 164s Preparing to unpack .../064-libpixman-1-0_0.42.2-1_arm64.deb ... 164s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 164s Selecting previously unselected package libxcb-render0:arm64. 164s Preparing to unpack .../065-libxcb-render0_1.15-1_arm64.deb ... 164s Unpacking libxcb-render0:arm64 (1.15-1) ... 164s Selecting previously unselected package libxcb-shm0:arm64. 164s Preparing to unpack .../066-libxcb-shm0_1.15-1_arm64.deb ... 164s Unpacking libxcb-shm0:arm64 (1.15-1) ... 165s Selecting previously unselected package libxrender1:arm64. 165s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 165s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 165s Selecting previously unselected package libcairo2:arm64. 165s Preparing to unpack .../068-libcairo2_1.18.0-1_arm64.deb ... 165s Unpacking libcairo2:arm64 (1.18.0-1) ... 165s Selecting previously unselected package libcurl4-openssl-dev:arm64. 165s Preparing to unpack .../069-libcurl4-openssl-dev_8.5.0-2ubuntu7_arm64.deb ... 165s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 165s Selecting previously unselected package libdatrie1:arm64. 165s Preparing to unpack .../070-libdatrie1_0.2.13-3_arm64.deb ... 165s Unpacking libdatrie1:arm64 (0.2.13-3) ... 165s Selecting previously unselected package libdeflate0:arm64. 165s Preparing to unpack .../071-libdeflate0_1.19-1_arm64.deb ... 165s Unpacking libdeflate0:arm64 (1.19-1) ... 165s Selecting previously unselected package libgraphite2-3:arm64. 165s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_arm64.deb ... 165s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 165s Selecting previously unselected package libharfbuzz0b:arm64. 165s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_arm64.deb ... 165s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 165s Selecting previously unselected package libsz2:arm64. 165s Preparing to unpack .../074-libsz2_1.1.2-1_arm64.deb ... 165s Unpacking libsz2:arm64 (1.1.2-1) ... 165s Selecting previously unselected package libhdf5-103-1:arm64. 165s Preparing to unpack .../075-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 165s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 165s Selecting previously unselected package libhdf5-cpp-103-1:arm64. 165s Preparing to unpack .../076-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 165s Unpacking libhdf5-cpp-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 165s Selecting previously unselected package libhdf5-fortran-102:arm64. 165s Preparing to unpack .../077-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_arm64.deb ... 165s Unpacking libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 165s Selecting previously unselected package libhdf5-hl-100:arm64. 165s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 165s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 165s Selecting previously unselected package libhdf5-hl-fortran-100:arm64. 165s Preparing to unpack .../079-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_arm64.deb ... 165s Unpacking libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 165s Selecting previously unselected package libhdf5-hl-cpp-100:arm64. 165s Preparing to unpack .../080-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_arm64.deb ... 165s Unpacking libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 165s Selecting previously unselected package zlib1g-dev:arm64. 165s Preparing to unpack .../081-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 165s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 165s Selecting previously unselected package libjpeg-turbo8:arm64. 165s Preparing to unpack .../082-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 165s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 165s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 165s Preparing to unpack .../083-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 165s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 165s Selecting previously unselected package libjpeg8:arm64. 165s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_arm64.deb ... 165s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 165s Selecting previously unselected package libjpeg8-dev:arm64. 166s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 166s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 166s Selecting previously unselected package libjpeg-dev:arm64. 166s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 166s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 166s Selecting previously unselected package libaec-dev:arm64. 166s Preparing to unpack .../087-libaec-dev_1.1.2-1_arm64.deb ... 166s Unpacking libaec-dev:arm64 (1.1.2-1) ... 166s Selecting previously unselected package libssl-dev:arm64. 166s Preparing to unpack .../088-libssl-dev_3.0.13-0ubuntu1_arm64.deb ... 166s Unpacking libssl-dev:arm64 (3.0.13-0ubuntu1) ... 166s Selecting previously unselected package libhdf5-dev. 166s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_arm64.deb ... 166s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 166s Selecting previously unselected package x11-common. 166s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 166s Unpacking x11-common (1:7.7+23ubuntu2) ... 166s Selecting previously unselected package libice6:arm64. 166s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_arm64.deb ... 166s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 166s Selecting previously unselected package libicu-dev:arm64. 166s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_arm64.deb ... 166s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 166s Selecting previously unselected package libjs-bootstrap. 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libjs-highlight.js (9.18.5+dfsg1-2) ... 167s Selecting previously unselected package libjs-jquery. 167s Preparing to unpack .../099-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 167s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 167s Selecting previously unselected package libjs-jquery-datatables. 167s Preparing to unpack .../100-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 167s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 167s Selecting previously unselected package libjs-sifter.js. 167s Preparing to unpack .../101-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 167s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 167s Selecting previously unselected package libjs-microplugin.js. 167s Preparing to unpack .../102-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 167s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 167s Selecting previously unselected package libjs-jquery-selectize.js. 167s Preparing to unpack .../103-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 167s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 167s Selecting previously unselected package libjs-jquery-ui. 167s Preparing to unpack .../104-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 167s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 167s Selecting previously unselected package libjs-json. 167s Preparing to unpack .../105-libjs-json_0~20221030+~1.0.8-1_all.deb ... 167s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 167s Selecting previously unselected package libjs-lunr. 167s Preparing to unpack .../106-libjs-lunr_2.3.9~dfsg-2_all.deb ... 167s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 167s Selecting previously unselected package libjs-prettify. 167s Preparing to unpack .../107-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 167s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 167s Selecting previously unselected package libkpathsea6:arm64. 167s Preparing to unpack .../108-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 167s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 167s Selecting previously unselected package liblapack3:arm64. 167s Preparing to unpack .../109-liblapack3_3.12.0-3_arm64.deb ... 167s Unpacking liblapack3:arm64 (3.12.0-3) ... 167s Selecting previously unselected package liblapack-dev:arm64. 168s Preparing to unpack .../110-liblapack-dev_3.12.0-3_arm64.deb ... 168s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 168s Selecting previously unselected package liblerc4:arm64. 168s Preparing to unpack .../111-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 168s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 168s Selecting previously unselected package liblua5.4-0:arm64. 168s Preparing to unpack .../112-liblua5.4-0_5.4.6-3_arm64.deb ... 168s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 168s Selecting previously unselected package libncurses-dev:arm64. 168s Preparing to unpack .../113-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 168s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 168s Selecting previously unselected package libthai-data. 168s Preparing to unpack .../114-libthai-data_0.1.29-2_all.deb ... 168s Unpacking libthai-data (0.1.29-2) ... 168s Selecting previously unselected package libthai0:arm64. 168s Preparing to unpack .../115-libthai0_0.1.29-2_arm64.deb ... 168s Unpacking libthai0:arm64 (0.1.29-2) ... 168s Selecting previously unselected package libpango-1.0-0:arm64. 168s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 168s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 168s Selecting previously unselected package libpangoft2-1.0-0:arm64. 168s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 168s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 168s Selecting previously unselected package libpangocairo-1.0-0:arm64. 168s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 168s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 168s Selecting previously unselected package libpaper1:arm64. 168s Preparing to unpack .../119-libpaper1_1.1.29_arm64.deb ... 168s Unpacking libpaper1:arm64 (1.1.29) ... 168s Selecting previously unselected package libpaper-utils. 168s Preparing to unpack .../120-libpaper-utils_1.1.29_arm64.deb ... 168s Unpacking libpaper-utils (1.1.29) ... 168s Selecting previously unselected package libpcre2-16-0:arm64. 168s Preparing to unpack .../121-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 168s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 168s Selecting previously unselected package libpcre2-32-0:arm64. 168s Preparing to unpack .../122-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 168s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 168s Selecting previously unselected package libpcre2-posix3:arm64. 168s Preparing to unpack .../123-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 168s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 168s Selecting previously unselected package libpcre2-dev:arm64. 168s Preparing to unpack .../124-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 168s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 168s Selecting previously unselected package libpkgconf3:arm64. 168s Preparing to unpack .../125-libpkgconf3_1.8.1-2_arm64.deb ... 168s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 168s Selecting previously unselected package libpng-dev:arm64. 168s Preparing to unpack .../126-libpng-dev_1.6.43-3_arm64.deb ... 168s Unpacking libpng-dev:arm64 (1.6.43-3) ... 168s Selecting previously unselected package libpotrace0:arm64. 168s Preparing to unpack .../127-libpotrace0_1.16-2_arm64.deb ... 168s Unpacking libpotrace0:arm64 (1.16-2) ... 168s Selecting previously unselected package libptexenc1:arm64. 169s Preparing to unpack .../128-libptexenc1_2023.20230311.66589-9_arm64.deb ... 169s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 169s Selecting previously unselected package libreadline-dev:arm64. 169s Preparing to unpack .../129-libreadline-dev_8.2-3.1_arm64.deb ... 169s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 169s Selecting previously unselected package libsharpyuv0:arm64. 169s Preparing to unpack .../130-libsharpyuv0_1.3.2-0.4_arm64.deb ... 169s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 169s Selecting previously unselected package libsm6:arm64. 169s Preparing to unpack .../131-libsm6_2%3a1.2.3-1build2_arm64.deb ... 169s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 169s Selecting previously unselected package libsynctex2:arm64. 169s Preparing to unpack .../132-libsynctex2_2023.20230311.66589-9_arm64.deb ... 169s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 169s Selecting previously unselected package libtcl8.6:arm64. 169s Preparing to unpack .../133-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 169s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 169s Selecting previously unselected package libteckit0:arm64. 169s Preparing to unpack .../134-libteckit0_2.5.12+ds1-1_arm64.deb ... 169s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 169s Selecting previously unselected package libtexlua53-5:arm64. 169s Preparing to unpack .../135-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 169s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 169s Selecting previously unselected package libjbig0:arm64. 169s Preparing to unpack .../136-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 169s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 169s Selecting previously unselected package libwebp7:arm64. 169s Preparing to unpack .../137-libwebp7_1.3.2-0.4_arm64.deb ... 169s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 169s Selecting previously unselected package libtiff6:arm64. 169s Preparing to unpack .../138-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 169s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 169s Selecting previously unselected package libxft2:arm64. 169s Preparing to unpack .../139-libxft2_2.3.6-1_arm64.deb ... 169s Unpacking libxft2:arm64 (2.3.6-1) ... 169s Selecting previously unselected package libxss1:arm64. 169s Preparing to unpack .../140-libxss1_1%3a1.2.3-1build2_arm64.deb ... 169s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 169s Selecting previously unselected package libtk8.6:arm64. 169s Preparing to unpack .../141-libtk8.6_8.6.13-2_arm64.deb ... 169s Unpacking libtk8.6:arm64 (8.6.13-2) ... 169s Selecting previously unselected package libxt6t64:arm64. 169s Preparing to unpack .../142-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 169s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 169s Selecting previously unselected package libxmu6:arm64. 169s Preparing to unpack .../143-libxmu6_2%3a1.1.3-3_arm64.deb ... 169s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 169s Selecting previously unselected package libxpm4:arm64. 169s Preparing to unpack .../144-libxpm4_1%3a3.5.17-1_arm64.deb ... 169s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 169s Selecting previously unselected package libxaw7:arm64. 169s Preparing to unpack .../145-libxaw7_2%3a1.0.14-1_arm64.deb ... 169s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 169s Selecting previously unselected package libxi6:arm64. 169s Preparing to unpack .../146-libxi6_2%3a1.8.1-1_arm64.deb ... 169s Unpacking libxi6:arm64 (2:1.8.1-1) ... 169s Selecting previously unselected package libzzip-0-13:arm64. 169s Preparing to unpack .../147-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 169s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 169s Selecting previously unselected package zip. 170s Preparing to unpack .../148-zip_3.0-13_arm64.deb ... 170s Unpacking zip (3.0-13) ... 170s Selecting previously unselected package unzip. 170s Preparing to unpack .../149-unzip_6.0-28ubuntu3_arm64.deb ... 170s Unpacking unzip (6.0-28ubuntu3) ... 170s Selecting previously unselected package xdg-utils. 170s Preparing to unpack .../150-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 170s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 170s Selecting previously unselected package r-base-core. 170s Preparing to unpack .../151-r-base-core_4.3.3-2build1_arm64.deb ... 170s Unpacking r-base-core (4.3.3-2build1) ... 170s Selecting previously unselected package r-cran-littler. 170s Preparing to unpack .../152-r-cran-littler_0.3.19-1_arm64.deb ... 170s Unpacking r-cran-littler (0.3.19-1) ... 170s Selecting previously unselected package littler. 170s Preparing to unpack .../153-littler_0.3.19-1_all.deb ... 170s Unpacking littler (0.3.19-1) ... 170s Selecting previously unselected package node-bootstrap-sass. 170s Preparing to unpack .../154-node-bootstrap-sass_3.4.3-2_all.deb ... 170s Unpacking node-bootstrap-sass (3.4.3-2) ... 170s Selecting previously unselected package node-html5shiv. 170s Preparing to unpack .../155-node-html5shiv_3.7.3+dfsg-5_all.deb ... 170s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 170s Selecting previously unselected package node-normalize.css. 170s Preparing to unpack .../156-node-normalize.css_8.0.1-5_all.deb ... 170s Unpacking node-normalize.css (8.0.1-5) ... 170s Selecting previously unselected package pandoc-data. 170s Preparing to unpack .../157-pandoc-data_3.1.3-1_all.deb ... 170s Unpacking pandoc-data (3.1.3-1) ... 170s Selecting previously unselected package pandoc. 170s Preparing to unpack .../158-pandoc_3.1.3+ds-2_arm64.deb ... 171s Unpacking pandoc (3.1.3+ds-2) ... 172s Selecting previously unselected package pkgconf-bin. 172s Preparing to unpack .../159-pkgconf-bin_1.8.1-2_arm64.deb ... 172s Unpacking pkgconf-bin (1.8.1-2) ... 172s Selecting previously unselected package pkgconf:arm64. 172s Preparing to unpack .../160-pkgconf_1.8.1-2_arm64.deb ... 172s Unpacking pkgconf:arm64 (1.8.1-2) ... 172s Selecting previously unselected package pkg-config:arm64. 172s Preparing to unpack .../161-pkg-config_1.8.1-2_arm64.deb ... 172s Unpacking pkg-config:arm64 (1.8.1-2) ... 172s Selecting previously unselected package liblzma-dev:arm64. 172s Preparing to unpack .../162-liblzma-dev_5.4.5-0.3_arm64.deb ... 172s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 172s Selecting previously unselected package r-base-dev. 172s Preparing to unpack .../163-r-base-dev_4.3.3-2build1_all.deb ... 172s Unpacking r-base-dev (4.3.3-2build1) ... 172s Selecting previously unselected package pkg-r-autopkgtest. 172s Preparing to unpack .../164-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 172s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 172s Selecting previously unselected package r-bioc-biocgenerics. 172s Preparing to unpack .../165-r-bioc-biocgenerics_0.48.1-2_all.deb ... 172s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 172s Selecting previously unselected package r-bioc-biobase. 172s Preparing to unpack .../166-r-bioc-biobase_2.62.0-1_arm64.deb ... 172s Unpacking r-bioc-biobase (2.62.0-1) ... 172s Selecting previously unselected package r-bioc-s4vectors. 172s Preparing to unpack .../167-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 172s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 172s Selecting previously unselected package r-bioc-iranges. 173s Preparing to unpack .../168-r-bioc-iranges_2.36.0-1_arm64.deb ... 173s Unpacking r-bioc-iranges (2.36.0-1) ... 173s Selecting previously unselected package r-cran-dbi. 173s Preparing to unpack .../169-r-cran-dbi_1.2.2-1_all.deb ... 173s Unpacking r-cran-dbi (1.2.2-1) ... 173s Selecting previously unselected package r-cran-bit. 173s Preparing to unpack .../170-r-cran-bit_4.0.5-1_arm64.deb ... 173s Unpacking r-cran-bit (4.0.5-1) ... 173s Selecting previously unselected package r-cran-bit64. 173s Preparing to unpack .../171-r-cran-bit64_4.0.5-1_arm64.deb ... 173s Unpacking r-cran-bit64 (4.0.5-1) ... 173s Selecting previously unselected package r-cran-rlang. 173s Preparing to unpack .../172-r-cran-rlang_1.1.3-1_arm64.deb ... 173s Unpacking r-cran-rlang (1.1.3-1) ... 173s Selecting previously unselected package r-cran-cli. 173s Preparing to unpack .../173-r-cran-cli_3.6.2-1_arm64.deb ... 173s Unpacking r-cran-cli (3.6.2-1) ... 173s Selecting previously unselected package r-cran-glue. 173s Preparing to unpack .../174-r-cran-glue_1.7.0-1_arm64.deb ... 173s Unpacking r-cran-glue (1.7.0-1) ... 173s Selecting previously unselected package r-cran-lifecycle. 173s Preparing to unpack .../175-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 173s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 173s Selecting previously unselected package r-cran-vctrs. 173s Preparing to unpack .../176-r-cran-vctrs_0.6.5-1_arm64.deb ... 173s Unpacking r-cran-vctrs (0.6.5-1) ... 173s Selecting previously unselected package r-cran-blob. 173s Preparing to unpack .../177-r-cran-blob_1.2.4-1_all.deb ... 173s Unpacking r-cran-blob (1.2.4-1) ... 173s Selecting previously unselected package r-cran-fastmap. 173s Preparing to unpack .../178-r-cran-fastmap_1.1.1-1_arm64.deb ... 173s Unpacking r-cran-fastmap (1.1.1-1) ... 173s Selecting previously unselected package r-cran-cachem. 173s Preparing to unpack .../179-r-cran-cachem_1.0.8-1_arm64.deb ... 173s Unpacking r-cran-cachem (1.0.8-1) ... 173s Selecting previously unselected package r-cran-memoise. 173s Preparing to unpack .../180-r-cran-memoise_2.0.1-1_all.deb ... 173s Unpacking r-cran-memoise (2.0.1-1) ... 173s Selecting previously unselected package r-cran-pkgconfig. 173s Preparing to unpack .../181-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 173s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 173s Selecting previously unselected package r-cran-plogr. 173s Preparing to unpack .../182-r-cran-plogr_0.2.0-3build1_all.deb ... 173s Unpacking r-cran-plogr (0.2.0-3build1) ... 174s Selecting previously unselected package r-cran-cpp11. 174s Preparing to unpack .../183-r-cran-cpp11_0.4.7-1_all.deb ... 174s Unpacking r-cran-cpp11 (0.4.7-1) ... 174s Selecting previously unselected package r-cran-rsqlite. 174s Preparing to unpack .../184-r-cran-rsqlite_2.3.4-1_arm64.deb ... 174s Unpacking r-cran-rsqlite (2.3.4-1) ... 174s Selecting previously unselected package r-cran-curl. 174s Preparing to unpack .../185-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 174s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-jsonlite. 174s Preparing to unpack .../186-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 174s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 174s Selecting previously unselected package r-cran-mime. 174s Preparing to unpack .../187-r-cran-mime_0.12-1_arm64.deb ... 174s Unpacking r-cran-mime (0.12-1) ... 174s Selecting previously unselected package r-cran-sys. 174s Preparing to unpack .../188-r-cran-sys_3.4.2-1_arm64.deb ... 174s Unpacking r-cran-sys (3.4.2-1) ... 174s Selecting previously unselected package r-cran-askpass. 174s Preparing to unpack .../189-r-cran-askpass_1.2.0-1_arm64.deb ... 174s Unpacking r-cran-askpass (1.2.0-1) ... 174s Selecting previously unselected package r-cran-openssl. 174s Preparing to unpack .../190-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 174s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 174s Selecting previously unselected package r-cran-r6. 174s Preparing to unpack .../191-r-cran-r6_2.5.1-1_all.deb ... 174s Unpacking r-cran-r6 (2.5.1-1) ... 174s Selecting previously unselected package r-cran-httr. 174s Preparing to unpack .../192-r-cran-httr_1.4.7+dfsg-1_all.deb ... 174s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 174s Selecting previously unselected package r-cran-png. 174s Preparing to unpack .../193-r-cran-png_0.1-8-1_arm64.deb ... 174s Unpacking r-cran-png (0.1-8-1) ... 174s Selecting previously unselected package r-bioc-zlibbioc. 174s Preparing to unpack .../194-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 174s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 174s Selecting previously unselected package r-bioc-xvector. 174s Preparing to unpack .../195-r-bioc-xvector_0.42.0-1_arm64.deb ... 174s Unpacking r-bioc-xvector (0.42.0-1) ... 174s Selecting previously unselected package r-cran-bitops. 174s Preparing to unpack .../196-r-cran-bitops_1.0-7-1_arm64.deb ... 174s Unpacking r-cran-bitops (1.0-7-1) ... 174s Selecting previously unselected package r-cran-rcurl. 174s Preparing to unpack .../197-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 174s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 174s Selecting previously unselected package r-bioc-genomeinfodbdata. 174s Preparing to unpack .../198-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 174s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 174s Selecting previously unselected package r-bioc-genomeinfodb. 174s Preparing to unpack .../199-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 174s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 175s Selecting previously unselected package r-cran-crayon. 175s Preparing to unpack .../200-r-cran-crayon_1.5.2-1_all.deb ... 175s Unpacking r-cran-crayon (1.5.2-1) ... 175s Selecting previously unselected package r-bioc-biostrings. 175s Preparing to unpack .../201-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 175s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 175s Selecting previously unselected package r-bioc-keggrest. 175s Preparing to unpack .../202-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 175s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 175s Selecting previously unselected package r-bioc-annotationdbi. 175s Preparing to unpack .../203-r-bioc-annotationdbi_1.64.1-1_all.deb ... 175s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 175s Selecting previously unselected package r-cran-xml. 175s Preparing to unpack .../204-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 175s Unpacking r-cran-xml (3.99-0.16.1-1) ... 175s Selecting previously unselected package r-cran-xtable. 175s Preparing to unpack .../205-r-cran-xtable_1%3a1.8-4-2_all.deb ... 175s Unpacking r-cran-xtable (1:1.8-4-2) ... 175s Selecting previously unselected package r-bioc-annotate. 175s Preparing to unpack .../206-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 175s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 175s Selecting previously unselected package r-cran-lattice. 175s Preparing to unpack .../207-r-cran-lattice_0.22-5-1_arm64.deb ... 175s Unpacking r-cran-lattice (0.22-5-1) ... 175s Selecting previously unselected package r-cran-matrix. 175s Preparing to unpack .../208-r-cran-matrix_1.6-5-1_arm64.deb ... 175s Unpacking r-cran-matrix (1.6-5-1) ... 175s Selecting previously unselected package r-cran-matrixstats. 175s Preparing to unpack .../209-r-cran-matrixstats_1.2.0-1_arm64.deb ... 175s Unpacking r-cran-matrixstats (1.2.0-1) ... 175s Selecting previously unselected package r-bioc-matrixgenerics. 175s Preparing to unpack .../210-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 175s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 175s Selecting previously unselected package r-cran-abind. 175s Preparing to unpack .../211-r-cran-abind_1.4-5-2_all.deb ... 175s Unpacking r-cran-abind (1.4-5-2) ... 175s Selecting previously unselected package r-bioc-s4arrays. 175s Preparing to unpack .../212-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 175s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 175s Selecting previously unselected package r-bioc-sparsearray. 175s Preparing to unpack .../213-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 175s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 175s Selecting previously unselected package r-bioc-delayedarray. 175s Preparing to unpack .../214-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 175s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 175s Selecting previously unselected package r-cran-pkgkitten. 175s Preparing to unpack .../215-r-cran-pkgkitten_0.2.3-1_all.deb ... 175s Unpacking r-cran-pkgkitten (0.2.3-1) ... 175s Selecting previously unselected package r-cran-rcpp. 175s Preparing to unpack .../216-r-cran-rcpp_1.0.12-1_arm64.deb ... 175s Unpacking r-cran-rcpp (1.0.12-1) ... 176s Selecting previously unselected package r-bioc-beachmat. 176s Preparing to unpack .../217-r-bioc-beachmat_2.18.1+ds-1_arm64.deb ... 176s Unpacking r-bioc-beachmat (2.18.1+ds-1) ... 176s Selecting previously unselected package r-cran-generics. 176s Preparing to unpack .../218-r-cran-generics_0.1.3-1_all.deb ... 176s Unpacking r-cran-generics (0.1.3-1) ... 176s Selecting previously unselected package r-cran-magrittr. 176s Preparing to unpack .../219-r-cran-magrittr_2.0.3-1_arm64.deb ... 176s Unpacking r-cran-magrittr (2.0.3-1) ... 176s Selecting previously unselected package r-cran-fansi. 176s Preparing to unpack .../220-r-cran-fansi_1.0.5-1_arm64.deb ... 176s Unpacking r-cran-fansi (1.0.5-1) ... 176s Selecting previously unselected package r-cran-utf8. 176s Preparing to unpack .../221-r-cran-utf8_1.2.4-1_arm64.deb ... 176s Unpacking r-cran-utf8 (1.2.4-1) ... 176s Selecting previously unselected package r-cran-pillar. 176s Preparing to unpack .../222-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 176s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 176s Selecting previously unselected package r-cran-tibble. 176s Preparing to unpack .../223-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 176s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 176s Selecting previously unselected package r-cran-withr. 176s Preparing to unpack .../224-r-cran-withr_2.5.0-1_all.deb ... 176s Unpacking r-cran-withr (2.5.0-1) ... 176s Selecting previously unselected package r-cran-tidyselect. 176s Preparing to unpack .../225-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 176s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 176s Selecting previously unselected package r-cran-dplyr. 176s Preparing to unpack .../226-r-cran-dplyr_1.1.4-1_arm64.deb ... 176s Unpacking r-cran-dplyr (1.1.4-1) ... 176s Selecting previously unselected package r-cran-purrr. 176s Preparing to unpack .../227-r-cran-purrr_1.0.2-1_arm64.deb ... 176s Unpacking r-cran-purrr (1.0.2-1) ... 176s Selecting previously unselected package r-cran-stringi. 176s Preparing to unpack .../228-r-cran-stringi_1.8.3-1_arm64.deb ... 176s Unpacking r-cran-stringi (1.8.3-1) ... 176s Selecting previously unselected package r-cran-stringr. 176s Preparing to unpack .../229-r-cran-stringr_1.5.1-1_all.deb ... 176s Unpacking r-cran-stringr (1.5.1-1) ... 176s Selecting previously unselected package r-cran-tidyr. 176s Preparing to unpack .../230-r-cran-tidyr_1.3.1-1_arm64.deb ... 176s Unpacking r-cran-tidyr (1.3.1-1) ... 176s Selecting previously unselected package r-cran-dbplyr. 176s Preparing to unpack .../231-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 176s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 176s Selecting previously unselected package r-cran-filelock. 176s Preparing to unpack .../232-r-cran-filelock_1.0.3-1_arm64.deb ... 176s Unpacking r-cran-filelock (1.0.3-1) ... 176s Selecting previously unselected package r-bioc-biocfilecache. 176s Preparing to unpack .../233-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 176s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 176s Selecting previously unselected package r-bioc-biocio. 176s Preparing to unpack .../234-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 176s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 177s Selecting previously unselected package r-cran-formatr. 177s Preparing to unpack .../235-r-cran-formatr_1.14-1_all.deb ... 177s Unpacking r-cran-formatr (1.14-1) ... 177s Selecting previously unselected package r-cran-lambda.r. 177s Preparing to unpack .../236-r-cran-lambda.r_1.2.4-2build1_all.deb ... 177s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 177s Selecting previously unselected package r-cran-futile.options. 177s Preparing to unpack .../237-r-cran-futile.options_1.0.1-3build1_all.deb ... 177s Unpacking r-cran-futile.options (1.0.1-3build1) ... 177s Selecting previously unselected package r-cran-futile.logger. 177s Preparing to unpack .../238-r-cran-futile.logger_1.4.3-4build1_all.deb ... 177s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 177s Selecting previously unselected package r-cran-snow. 177s Preparing to unpack .../239-r-cran-snow_1%3a0.4.4-2_all.deb ... 177s Unpacking r-cran-snow (1:0.4.4-2) ... 177s Selecting previously unselected package r-cran-codetools. 177s Preparing to unpack .../240-r-cran-codetools_0.2-19-1_all.deb ... 177s Unpacking r-cran-codetools (0.2-19-1) ... 177s Selecting previously unselected package r-cran-bh. 177s Preparing to unpack .../241-r-cran-bh_1.84.0-1_all.deb ... 177s Unpacking r-cran-bh (1.84.0-1) ... 177s Selecting previously unselected package r-bioc-biocparallel. 177s Preparing to unpack .../242-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 177s Unpacking r-bioc-biocparallel (1.36.0-1) ... 177s Selecting previously unselected package r-cran-base64enc. 177s Preparing to unpack .../243-r-cran-base64enc_0.1-3-3_arm64.deb ... 177s Unpacking r-cran-base64enc (0.1-3-3) ... 177s Selecting previously unselected package r-cran-digest. 177s Preparing to unpack .../244-r-cran-digest_0.6.34-1_arm64.deb ... 177s Unpacking r-cran-digest (0.6.34-1) ... 177s Selecting previously unselected package r-cran-ellipsis. 177s Preparing to unpack .../245-r-cran-ellipsis_0.3.2-2_arm64.deb ... 177s Unpacking r-cran-ellipsis (0.3.2-2) ... 177s Selecting previously unselected package r-cran-htmltools. 177s Preparing to unpack .../246-r-cran-htmltools_0.5.7-1_arm64.deb ... 177s Unpacking r-cran-htmltools (0.5.7-1) ... 177s Selecting previously unselected package r-cran-evaluate. 177s Preparing to unpack .../247-r-cran-evaluate_0.23-1_all.deb ... 177s Unpacking r-cran-evaluate (0.23-1) ... 177s Selecting previously unselected package r-cran-xfun. 177s Preparing to unpack .../248-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 177s Unpacking r-cran-xfun (0.41+dfsg-1) ... 177s Selecting previously unselected package r-cran-highr. 177s Preparing to unpack .../249-r-cran-highr_0.10+dfsg-1_all.deb ... 177s Unpacking r-cran-highr (0.10+dfsg-1) ... 177s Selecting previously unselected package r-cran-yaml. 177s Preparing to unpack .../250-r-cran-yaml_2.3.8-1_arm64.deb ... 177s Unpacking r-cran-yaml (2.3.8-1) ... 177s Selecting previously unselected package libjs-mathjax. 177s Preparing to unpack .../251-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 177s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 178s Selecting previously unselected package r-cran-knitr. 178s Preparing to unpack .../252-r-cran-knitr_1.45+dfsg-1_all.deb ... 178s Unpacking r-cran-knitr (1.45+dfsg-1) ... 178s Selecting previously unselected package r-cran-jquerylib. 178s Preparing to unpack .../253-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 178s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 178s Selecting previously unselected package r-cran-fs. 178s Preparing to unpack .../254-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 178s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 178s Selecting previously unselected package r-cran-rappdirs. 178s Preparing to unpack .../255-r-cran-rappdirs_0.3.3-1_arm64.deb ... 178s Unpacking r-cran-rappdirs (0.3.3-1) ... 178s Selecting previously unselected package r-cran-sass. 178s Preparing to unpack .../256-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 178s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 178s Selecting previously unselected package r-cran-bslib. 178s Preparing to unpack .../257-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 178s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 178s Selecting previously unselected package r-cran-fontawesome. 178s Preparing to unpack .../258-r-cran-fontawesome_0.5.2-1_all.deb ... 178s Unpacking r-cran-fontawesome (0.5.2-1) ... 178s Selecting previously unselected package r-cran-tinytex. 179s Preparing to unpack .../259-r-cran-tinytex_0.49-1_all.deb ... 179s Unpacking r-cran-tinytex (0.49-1) ... 179s Selecting previously unselected package libjs-modernizr. 179s Preparing to unpack .../260-libjs-modernizr_2.6.2+ds1-5_all.deb ... 179s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 179s Selecting previously unselected package r-cran-later. 179s Preparing to unpack .../261-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 179s Unpacking r-cran-later (1.3.2+dfsg-1) ... 179s Selecting previously unselected package r-cran-promises. 179s Preparing to unpack .../262-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 179s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 179s Selecting previously unselected package r-cran-httpuv. 179s Preparing to unpack .../263-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 179s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 179s Selecting previously unselected package r-cran-sourcetools. 179s Preparing to unpack .../264-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 179s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 179s Selecting previously unselected package r-cran-commonmark. 179s Preparing to unpack .../265-r-cran-commonmark_1.9.1-1_arm64.deb ... 179s Unpacking r-cran-commonmark (1.9.1-1) ... 179s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 179s Preparing to unpack .../266-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 179s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 179s Selecting previously unselected package r-cran-shiny. 179s Preparing to unpack .../267-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 179s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 179s Selecting previously unselected package r-cran-rmarkdown. 179s Preparing to unpack .../268-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 179s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 179s Selecting previously unselected package r-cran-bookdown. 179s Preparing to unpack .../269-r-cran-bookdown_0.37+dfsg-1_all.deb ... 179s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 179s Selecting previously unselected package r-cran-biocmanager. 179s Preparing to unpack .../270-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 179s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 179s Selecting previously unselected package tex-common. 179s Preparing to unpack .../271-tex-common_6.18_all.deb ... 179s Unpacking tex-common (6.18) ... 179s Selecting previously unselected package t1utils. 180s Preparing to unpack .../272-t1utils_1.41-4build2_arm64.deb ... 180s Unpacking t1utils (1.41-4build2) ... 180s Selecting previously unselected package texlive-binaries. 180s Preparing to unpack .../273-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 180s Unpacking texlive-binaries (2023.20230311.66589-9) ... 180s Selecting previously unselected package texlive-base. 180s Preparing to unpack .../274-texlive-base_2023.20240207-1_all.deb ... 180s Unpacking texlive-base (2023.20240207-1) ... 181s Selecting previously unselected package texlive-latex-base. 181s Preparing to unpack .../275-texlive-latex-base_2023.20240207-1_all.deb ... 181s Unpacking texlive-latex-base (2023.20240207-1) ... 181s Selecting previously unselected package texlive-bibtex-extra. 181s Preparing to unpack .../276-texlive-bibtex-extra_2023.20240207-1_all.deb ... 181s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 184s Selecting previously unselected package r-bioc-biocstyle. 184s Preparing to unpack .../277-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 184s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 184s Selecting previously unselected package r-cran-hms. 184s Preparing to unpack .../278-r-cran-hms_1.1.3-1_all.deb ... 184s Unpacking r-cran-hms (1.1.3-1) ... 184s Selecting previously unselected package r-cran-prettyunits. 184s Preparing to unpack .../279-r-cran-prettyunits_1.2.0-1_all.deb ... 184s Unpacking r-cran-prettyunits (1.2.0-1) ... 184s Selecting previously unselected package r-cran-progress. 184s Preparing to unpack .../280-r-cran-progress_1.2.3-1_all.deb ... 184s Unpacking r-cran-progress (1.2.3-1) ... 184s Selecting previously unselected package r-cran-xml2. 184s Preparing to unpack .../281-r-cran-xml2_1.3.6-1_arm64.deb ... 184s Unpacking r-cran-xml2 (1.3.6-1) ... 184s Selecting previously unselected package r-bioc-biomart. 184s Preparing to unpack .../282-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 184s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 184s Selecting previously unselected package r-bioc-sparsematrixstats. 184s Preparing to unpack .../283-r-bioc-sparsematrixstats_1.14.0+dfsg-1_arm64.deb ... 184s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 184s Selecting previously unselected package r-bioc-delayedmatrixstats. 184s Preparing to unpack .../284-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 184s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 184s Selecting previously unselected package r-bioc-genomicranges. 185s Preparing to unpack .../285-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 185s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 185s Selecting previously unselected package r-bioc-summarizedexperiment. 185s Preparing to unpack .../286-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 185s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 185s Selecting previously unselected package r-cran-locfit. 185s Preparing to unpack .../287-r-cran-locfit_1.5-9.8-1_arm64.deb ... 185s Unpacking r-cran-locfit (1.5-9.8-1) ... 185s Selecting previously unselected package r-cran-gtable. 185s Preparing to unpack .../288-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 185s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 185s Selecting previously unselected package r-cran-isoband. 185s Preparing to unpack .../289-r-cran-isoband_0.2.7-1_arm64.deb ... 185s Unpacking r-cran-isoband (0.2.7-1) ... 185s Selecting previously unselected package r-cran-mass. 185s Preparing to unpack .../290-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 185s Unpacking r-cran-mass (7.3-60.0.1-1) ... 185s Selecting previously unselected package r-cran-nlme. 185s Preparing to unpack .../291-r-cran-nlme_3.1.164-1_arm64.deb ... 185s Unpacking r-cran-nlme (3.1.164-1) ... 185s Selecting previously unselected package r-cran-mgcv. 185s Preparing to unpack .../292-r-cran-mgcv_1.9-1-1_arm64.deb ... 185s Unpacking r-cran-mgcv (1.9-1-1) ... 185s Selecting previously unselected package r-cran-farver. 185s Preparing to unpack .../293-r-cran-farver_2.1.1-1_arm64.deb ... 185s Unpacking r-cran-farver (2.1.1-1) ... 185s Selecting previously unselected package r-cran-labeling. 185s Preparing to unpack .../294-r-cran-labeling_0.4.3-1_all.deb ... 185s Unpacking r-cran-labeling (0.4.3-1) ... 185s Selecting previously unselected package r-cran-colorspace. 185s Preparing to unpack .../295-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 185s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 185s Selecting previously unselected package r-cran-munsell. 185s Preparing to unpack .../296-r-cran-munsell_0.5.0-2build1_all.deb ... 185s Unpacking r-cran-munsell (0.5.0-2build1) ... 185s Selecting previously unselected package r-cran-rcolorbrewer. 185s Preparing to unpack .../297-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 185s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 185s Selecting previously unselected package r-cran-viridislite. 186s Preparing to unpack .../298-r-cran-viridislite_0.4.2-2_all.deb ... 186s Unpacking r-cran-viridislite (0.4.2-2) ... 186s Selecting previously unselected package r-cran-scales. 186s Preparing to unpack .../299-r-cran-scales_1.3.0-1_all.deb ... 186s Unpacking r-cran-scales (1.3.0-1) ... 186s Selecting previously unselected package r-cran-ggplot2. 186s Preparing to unpack .../300-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 186s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 186s Selecting previously unselected package r-cran-rcpparmadillo. 186s Preparing to unpack .../301-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ... 186s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 186s Selecting previously unselected package r-bioc-deseq2. 186s Preparing to unpack .../302-r-bioc-deseq2_1.42.0+dfsg-1_arm64.deb ... 186s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 186s Selecting previously unselected package r-cran-hwriter. 186s Preparing to unpack .../303-r-cran-hwriter_1.3.2.1-1_all.deb ... 186s Unpacking r-cran-hwriter (1.3.2.1-1) ... 186s Selecting previously unselected package r-bioc-rhtslib. 186s Preparing to unpack .../304-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 186s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 186s Selecting previously unselected package r-bioc-rsamtools. 186s Preparing to unpack .../305-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 186s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 186s Selecting previously unselected package r-cran-statmod. 186s Preparing to unpack .../306-r-cran-statmod_1.5.0-1_arm64.deb ... 186s Unpacking r-cran-statmod (1.5.0-1) ... 186s Selecting previously unselected package r-bioc-geneplotter. 186s Preparing to unpack .../307-r-bioc-geneplotter_1.80.0+dfsg-1_all.deb ... 186s Unpacking r-bioc-geneplotter (1.80.0+dfsg-1) ... 186s Selecting previously unselected package r-cran-survival. 186s Preparing to unpack .../308-r-cran-survival_3.5-8-1_arm64.deb ... 186s Unpacking r-cran-survival (3.5-8-1) ... 186s Selecting previously unselected package r-bioc-genefilter. 186s Preparing to unpack .../309-r-bioc-genefilter_1.84.0-1_arm64.deb ... 186s Unpacking r-bioc-genefilter (1.84.0-1) ... 186s Selecting previously unselected package r-bioc-dexseq. 186s Preparing to unpack .../310-r-bioc-dexseq_1.48.0+dfsg-1_all.deb ... 186s Unpacking r-bioc-dexseq (1.48.0+dfsg-1) ... 186s Selecting previously unselected package r-bioc-genomicalignments. 186s Preparing to unpack .../311-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 186s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 187s Selecting previously unselected package r-cran-rjson. 187s Preparing to unpack .../312-r-cran-rjson_0.2.21-1_arm64.deb ... 187s Unpacking r-cran-rjson (0.2.21-1) ... 187s Selecting previously unselected package r-cran-restfulr. 187s Preparing to unpack .../313-r-cran-restfulr_0.0.15-1_arm64.deb ... 187s Unpacking r-cran-restfulr (0.0.15-1) ... 187s Selecting previously unselected package r-bioc-rtracklayer. 187s Preparing to unpack .../314-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 187s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 187s Selecting previously unselected package r-bioc-genomicfeatures. 187s Preparing to unpack .../315-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 187s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 187s Selecting previously unselected package r-bioc-rhdf5lib. 187s Preparing to unpack .../316-r-bioc-rhdf5lib_1.24.2+dfsg-1_arm64.deb ... 187s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 187s Selecting previously unselected package r-bioc-rhdf5filters. 187s Preparing to unpack .../317-r-bioc-rhdf5filters_1.14.1+dfsg-3_arm64.deb ... 187s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 187s Selecting previously unselected package r-bioc-rhdf5. 187s Preparing to unpack .../318-r-bioc-rhdf5_2.46.1+dfsg-1_arm64.deb ... 187s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 187s Selecting previously unselected package r-bioc-hdf5array. 187s Preparing to unpack .../319-r-bioc-hdf5array_1.30.1-1_arm64.deb ... 187s Unpacking r-bioc-hdf5array (1.30.1-1) ... 187s Selecting previously unselected package r-bioc-singlecellexperiment. 187s Preparing to unpack .../320-r-bioc-singlecellexperiment_1.24.0+ds-1_all.deb ... 187s Unpacking r-bioc-singlecellexperiment (1.24.0+ds-1) ... 187s Selecting previously unselected package r-bioc-glmgampoi. 187s Preparing to unpack .../321-r-bioc-glmgampoi_1.14.3+dfsg-1_arm64.deb ... 187s Unpacking r-bioc-glmgampoi (1.14.3+dfsg-1) ... 188s Selecting previously unselected package r-cran-brew. 188s Preparing to unpack .../322-r-cran-brew_1.0-10-1_all.deb ... 188s Unpacking r-cran-brew (1.0-10-1) ... 188s Selecting previously unselected package r-cran-brio. 188s Preparing to unpack .../323-r-cran-brio_1.1.4-1_arm64.deb ... 188s Unpacking r-cran-brio (1.1.4-1) ... 188s Selecting previously unselected package r-cran-ps. 188s Preparing to unpack .../324-r-cran-ps_1.7.6-1_arm64.deb ... 188s Unpacking r-cran-ps (1.7.6-1) ... 188s Selecting previously unselected package r-cran-processx. 188s Preparing to unpack .../325-r-cran-processx_3.8.3-1_arm64.deb ... 188s Unpacking r-cran-processx (3.8.3-1) ... 188s Selecting previously unselected package r-cran-callr. 188s Preparing to unpack .../326-r-cran-callr_3.7.3-2_all.deb ... 188s Unpacking r-cran-callr (3.7.3-2) ... 188s Selecting previously unselected package r-cran-desc. 188s Preparing to unpack .../327-r-cran-desc_1.4.3-1_all.deb ... 188s Unpacking r-cran-desc (1.4.3-1) ... 188s Selecting previously unselected package r-cran-diffobj. 188s Preparing to unpack .../328-r-cran-diffobj_0.3.5-1_arm64.deb ... 188s Unpacking r-cran-diffobj (0.3.5-1) ... 188s Selecting previously unselected package r-cran-pkgbuild. 188s Preparing to unpack .../329-r-cran-pkgbuild_1.4.3-1_all.deb ... 188s Unpacking r-cran-pkgbuild (1.4.3-1) ... 188s Selecting previously unselected package r-cran-rprojroot. 188s Preparing to unpack .../330-r-cran-rprojroot_2.0.4-1_all.deb ... 188s Unpacking r-cran-rprojroot (2.0.4-1) ... 188s Selecting previously unselected package r-cran-pkgload. 188s Preparing to unpack .../331-r-cran-pkgload_1.3.4-1_all.deb ... 188s Unpacking r-cran-pkgload (1.3.4-1) ... 188s Selecting previously unselected package r-cran-praise. 188s Preparing to unpack .../332-r-cran-praise_1.0.0-4build1_all.deb ... 188s Unpacking r-cran-praise (1.0.0-4build1) ... 188s 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r-bioc-biostrings (2.70.2+dfsg-1) ... 195s Setting up r-cran-fontawesome (0.5.2-1) ... 195s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 195s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 195s Setting up r-cran-waldo (0.5.2-1build1) ... 195s Setting up r-cran-tidyr (1.3.1-1) ... 195s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 195s Setting up r-cran-roxygen2 (7.3.1-1) ... 195s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 195s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 195s Setting up r-bioc-hdf5array (1.30.1-1) ... 195s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 195s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 195s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 195s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 195s Setting up r-bioc-annotationdbi (1.64.1-1) ... 195s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 195s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 195s Setting up r-cran-testthat (3.2.1-1) ... 195s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 195s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 195s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 195s Setting up r-bioc-beachmat (2.18.1+ds-1) ... 195s Setting up r-bioc-genefilter (1.84.0-1) ... 195s Setting up r-bioc-genomicalignments (1.38.2-1) ... 195s Setting up r-bioc-geneplotter (1.80.0+dfsg-1) ... 195s Setting up r-cran-bookdown (0.37+dfsg-1) ... 195s Setting up r-bioc-rtracklayer (1.62.0-1) ... 195s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 195s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 195s Setting up r-bioc-glmgampoi (1.14.3+dfsg-1) ... 195s Setting up r-bioc-dexseq (1.48.0+dfsg-1) ... 195s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 195s Setting up autopkgtest-satdep (0) ... 195s Processing triggers for man-db (2.12.0-3) ... 196s Processing triggers for install-info (7.1-3) ... 196s Processing triggers for libc-bin (2.39-0ubuntu2) ... 196s Processing triggers for tex-common (6.18) ... 196s Running updmap-sys. This may take some time... done. 196s Running mktexlsr /var/lib/texmf ... done. 196s Building format(s) --all. 234s This may take some time... done. 253s (Reading database ... 129341 files and directories currently installed.) 253s Removing autopkgtest-satdep (0) ... 254s autopkgtest [17:32:08]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 254s autopkgtest [17:32:08]: test pkg-r-autopkgtest: [----------------------- 255s Test: Try to load the R library DEXSeq 256s 256s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 256s Copyright (C) 2024 The R Foundation for Statistical Computing 256s Platform: aarch64-unknown-linux-gnu (64-bit) 256s 256s R is free software and comes with ABSOLUTELY NO WARRANTY. 256s You are welcome to redistribute it under certain conditions. 256s Type 'license()' or 'licence()' for distribution details. 256s 256s R is a collaborative project with many contributors. 256s Type 'contributors()' for more information and 256s 'citation()' on how to cite R or R packages in publications. 256s 256s Type 'demo()' for some demos, 'help()' for on-line help, or 256s 'help.start()' for an HTML browser interface to help. 256s Type 'q()' to quit R. 256s 256s > library('DEXSeq') 256s Loading required package: BiocParallel 256s Loading required package: Biobase 256s Loading required package: BiocGenerics 256s 256s Attaching package: ‘BiocGenerics’ 256s 256s The following objects are masked from ‘package:stats’: 256s 256s IQR, mad, sd, var, xtabs 256s 256s The following objects are masked from ‘package:base’: 256s 256s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 256s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 256s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 256s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 256s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 256s table, tapply, union, unique, unsplit, which.max, which.min 256s 257s Welcome to Bioconductor 257s 257s Vignettes contain introductory material; view with 257s 'browseVignettes()'. To cite Bioconductor, see 257s 'citation("Biobase")', and for packages 'citation("pkgname")'. 257s 257s Loading required package: SummarizedExperiment 257s Loading required package: MatrixGenerics 257s Loading required package: matrixStats 257s 257s Attaching package: ‘matrixStats’ 257s 257s The following objects are masked from ‘package:Biobase’: 257s 257s anyMissing, rowMedians 257s 257s 257s Attaching package: ‘MatrixGenerics’ 257s 257s The following objects are masked from ‘package:matrixStats’: 257s 257s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 257s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 257s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 257s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 257s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 257s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 257s colWeightedMeans, colWeightedMedians, colWeightedSds, 257s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 257s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 257s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 257s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 257s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 257s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 257s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 257s rowWeightedSds, rowWeightedVars 257s 257s The following object is masked from ‘package:Biobase’: 257s 257s rowMedians 257s 257s Loading required package: GenomicRanges 257s Loading required package: stats4 257s Loading required package: S4Vectors 258s 258s Attaching package: ‘S4Vectors’ 258s 258s The following object is masked from ‘package:utils’: 258s 258s findMatches 258s 258s The following objects are masked from ‘package:base’: 258s 258s expand.grid, I, unname 258s 258s Loading required package: IRanges 259s Loading required package: GenomeInfoDb 263s Loading required package: DESeq2 265s Loading required package: AnnotationDbi 266s Loading required package: RColorBrewer 267s > 267s > 268s Other tests are currently unsupported! 268s They will be progressively added. 268s autopkgtest [17:32:22]: test pkg-r-autopkgtest: -----------------------] 269s autopkgtest [17:32:23]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 269s pkg-r-autopkgtest PASS 269s autopkgtest [17:32:23]: @@@@@@@@@@@@@@@@@@@@ summary 269s pkg-r-autopkgtest PASS 280s Creating nova instance adt-noble-arm64-r-bioc-dexseq-20240316-172754-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...