0s autopkgtest [02:08:38]: starting date: 2024-03-07 0s autopkgtest [02:08:38]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline 0s autopkgtest [02:08:38]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.edn6uvtg/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-cran-rcpparmadillo --apt-upgrade r-bioc-deseq2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-rcpparmadillo/0.12.8.1.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-arm64-7.secgroup --name adt-noble-arm64-r-bioc-deseq2-20240307-020838-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 225s autopkgtest [02:12:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 226s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 226s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [3976 B] 227s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [1817 kB] 227s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [317 kB] 227s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [23.8 kB] 227s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [439 kB] 227s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 227s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 227s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 227s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [2118 kB] 227s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 227s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [14.6 kB] 227s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 233s Fetched 4882 kB in 2s (2084 kB/s) 233s Reading package lists... 242s Reading package lists... 243s Building dependency tree... 243s Reading state information... 244s Calculating upgrade... 245s The following packages will be REMOVED: 245s libefiboot1 libefivar1 245s The following NEW packages will be installed: 245s libefiboot1t64 libefivar1t64 245s The following packages will be upgraded: 245s dmsetup grub-common grub2-common libdevmapper1.02.1 245s 4 upgraded, 2 newly installed, 2 to remove and 0 not upgraded. 245s Need to get 3143 kB of archives. 245s After this operation, 6144 B of additional disk space will be used. 245s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libdevmapper1.02.1 arm64 2:1.02.185-3ubuntu1 [128 kB] 245s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 grub2-common arm64 2.12-1ubuntu4 [671 kB] 245s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 grub-common arm64 2.12-1ubuntu4 [2174 kB] 246s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libefivar1t64 arm64 38-3.1 [55.1 kB] 246s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libefiboot1t64 arm64 38-3.1 [40.5 kB] 246s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 dmsetup arm64 2:1.02.185-3ubuntu1 [74.5 kB] 246s Preconfiguring packages ... 247s Fetched 3143 kB in 1s (4502 kB/s) 247s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75860 files and directories currently installed.) 247s Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-3ubuntu1_arm64.deb ... 247s Unpacking libdevmapper1.02.1:arm64 (2:1.02.185-3ubuntu1) over (2:1.02.185-2ubuntu1) ... 247s Preparing to unpack .../grub2-common_2.12-1ubuntu4_arm64.deb ... 247s Unpacking grub2-common (2.12-1ubuntu4) over (2.12-1ubuntu3) ... 247s Preparing to unpack .../grub-common_2.12-1ubuntu4_arm64.deb ... 247s Unpacking grub-common (2.12-1ubuntu4) over (2.12-1ubuntu3) ... 247s dpkg: libefivar1:arm64: dependency problems, but removing anyway as you requested: 247s mokutil depends on libefivar1 (>= 37). 247s libefiboot1:arm64 depends on libefivar1 (>= 38). 247s efibootmgr depends on libefivar1 (>= 38). 247s 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75860 files and directories currently installed.) 248s Removing libefivar1:arm64 (38-3) ... 248s Selecting previously unselected package libefivar1t64:arm64. 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75855 files and directories currently installed.) 248s Preparing to unpack .../libefivar1t64_38-3.1_arm64.deb ... 248s Unpacking libefivar1t64:arm64 (38-3.1) ... 248s dpkg: libefiboot1:arm64: dependency problems, but removing anyway as you requested: 248s efibootmgr depends on libefiboot1 (>= 38). 248s 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75861 files and directories currently installed.) 248s Removing libefiboot1:arm64 (38-3) ... 248s Selecting previously unselected package libefiboot1t64:arm64. 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75856 files and directories currently installed.) 248s Preparing to unpack .../libefiboot1t64_38-3.1_arm64.deb ... 248s Unpacking libefiboot1t64:arm64 (38-3.1) ... 248s Preparing to unpack .../dmsetup_2%3a1.02.185-3ubuntu1_arm64.deb ... 248s Unpacking dmsetup (2:1.02.185-3ubuntu1) over (2:1.02.185-2ubuntu1) ... 248s Setting up libefivar1t64:arm64 (38-3.1) ... 248s Setting up libdevmapper1.02.1:arm64 (2:1.02.185-3ubuntu1) ... 248s Setting up dmsetup (2:1.02.185-3ubuntu1) ... 248s Setting up libefiboot1t64:arm64 (38-3.1) ... 248s Setting up grub-common (2.12-1ubuntu4) ... 248s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 251s Setting up grub2-common (2.12-1ubuntu4) ... 251s Processing triggers for man-db (2.12.0-3) ... 252s Processing triggers for install-info (7.1-3) ... 252s Processing triggers for initramfs-tools (0.142ubuntu19) ... 252s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 252s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 278s System running in EFI mode, skipping. 278s Processing triggers for libc-bin (2.39-0ubuntu2) ... 278s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 278s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 278s Reading package lists... 279s Building dependency tree... 279s Reading state information... 280s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 282s sh: Attempting to set up Debian/Ubuntu apt sources automatically 282s sh: Distribution appears to be Ubuntu 289s Reading package lists... 289s Building dependency tree... 289s Reading state information... 291s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1eatmydata is already the newest version (131-1). 291s dbus is already the newest version (1.14.10-4ubuntu1). 291s dbus set to manually installed. 291s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 291s 291s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 291s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 291s Reading package lists... 292s Building dependency tree... 292s Reading state information... 293s rng-tools-debian is already the newest version (2.4). 293s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 293s Reading package lists... 294s Building dependency tree... 294s Reading state information... 295s haveged is already the newest version (1.9.14-1ubuntu1). 295s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 296s Reading package lists... 296s Building dependency tree... 296s Reading state information... 298s The following packages will be REMOVED: 298s cloud-init* python3-configobj* python3-debconf* 299s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 299s After this operation, 3248 kB disk space will be freed. 299s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75862 files and directories currently installed.) 299s Removing cloud-init (24.1-0ubuntu1) ... 300s Removing python3-configobj (5.0.8-3) ... 300s Removing python3-debconf (1.5.86) ... 300s Processing triggers for man-db (2.12.0-3) ... 301s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75473 files and directories currently installed.) 301s Purging configuration files for cloud-init (24.1-0ubuntu1) ... 303s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 303s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 304s Reading package lists... 304s Building dependency tree... 304s Reading state information... 306s linux-generic is already the newest version (6.8.0-11.11+1). 306s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 307s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 307s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 307s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 307s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 307s Hit:5 http://ftpmaster.internal/ubuntu noble-backports InRelease 315s Reading package lists... 315s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 315s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 315s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 316s Reading package lists... 316s Building dependency tree... 316s Reading state information... 318s Calculating upgrade... 319s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 319s Reading package lists... 319s Building dependency tree... 319s Reading state information... 321s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 321s autopkgtest [02:13:59]: rebooting testbed after setup commands that affected boot 489s autopkgtest [02:16:47]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 490s autopkgtest [02:16:48]: testbed dpkg architecture: arm64 491s autopkgtest [02:16:49]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-deseq2 492s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 492s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 492s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 494s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-deseq2 1.42.0+dfsg-1 (dsc) [2388 B] 494s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-deseq2 1.42.0+dfsg-1 (tar) [594 kB] 494s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-deseq2 1.42.0+dfsg-1 (diff) [4936 B] 494s gpgv: Signature made Thu Nov 30 13:35:58 2023 UTC 494s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 494s gpgv: issuer "tillea@rki.de" 494s gpgv: Can't check signature: No public key 494s dpkg-source: warning: cannot verify inline signature for ./r-bioc-deseq2_1.42.0+dfsg-1.dsc: no acceptable signature found 494s autopkgtest [02:16:52]: testing package r-bioc-deseq2 version 1.42.0+dfsg-1 494s autopkgtest [02:16:52]: build not needed 496s autopkgtest [02:16:54]: test pkg-r-autopkgtest: preparing testbed 498s Reading package lists... 499s Building dependency tree... 499s Reading state information... 500s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 500s Starting 2 pkgProblemResolver with broken count: 0 500s Done 501s Done 501s Starting pkgProblemResolver with broken count: 0 502s Starting 2 pkgProblemResolver with broken count: 0 502s Done 503s The following additional packages will be installed: 503s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 503s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 503s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 503s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 503s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 503s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 503s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 503s libblas-dev libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev 503s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev 503s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 503s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 503s libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 503s libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 libicu-dev 503s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 503s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 503s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 503s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 503s libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr 503s libjs-popper.js libjs-prettify libjs-sifter.js 503s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 503s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 503s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 503s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 503s libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev libsharpyuv0 libsm6 503s libsnappy1v5 libssl-dev libstdc++-13-dev libsz2 libtcl8.6 libthai-data 503s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 503s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 503s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 503s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 503s r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 503s r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 503s r-bioc-biocio r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart 503s r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats 503s r-bioc-deseq2 r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 503s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 503s r-bioc-glmgampoi r-bioc-hdf5array r-bioc-interactivedisplaybase 503s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 503s r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib 503s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 503s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats 503s r-bioc-summarizedexperiment r-bioc-tximeta r-bioc-tximport 503s r-bioc-tximportdata r-bioc-xvector r-bioc-zlibbioc r-cran-abind 503s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 503s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-brio r-cran-bslib 503s r-cran-cachem r-cran-callr r-cran-cli r-cran-clipr r-cran-codetools 503s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon 503s r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 503s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis 503s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 503s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 503s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 503s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets 503s r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite 503s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 503s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit 503s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 503s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 503s r-cran-pbapply r-cran-pheatmap r-cran-pillar r-cran-pkgbuild 503s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png 503s r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 503s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 503s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl 503s r-cran-readr r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang 503s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales 503s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 503s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 503s r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite 503s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 503s r-cran-xtable r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip 503s zlib1g-dev 503s Suggested packages: 503s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 503s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 503s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 503s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 503s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 503s libboost-context1.83-dev libboost-contract1.83-dev 503s libboost-coroutine1.83-dev libboost-date-time1.83-dev 503s libboost-exception1.83-dev libboost-fiber1.83-dev 503s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 503s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 503s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 503s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 503s libboost-numpy1.83-dev libboost-program-options1.83-dev 503s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 503s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 503s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 503s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 503s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 503s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 503s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 503s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 503s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 503s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 503s librsvg2-bin groff ghc php python ruby libjs-katex 503s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 503s r-base-html texlive-base texlive-latex-base texlive-plain-generic 503s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 503s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle 503s r-bioc-variantannotation r-bioc-experimenthub r-cran-rcmdcheck r-bioc-all 503s r-bioc-affy r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 503s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 503s r-cran-webmockr r-bioc-bsgenome r-bioc-genefilter r-cran-lobstr 503s r-cran-profmem r-bioc-ggbio r-bioc-gviz r-cran-r.utils r-bioc-edger 503s r-cran-markdown r-bioc-dexseq r-cran-zoo r-bioc-limma r-cran-statmod 503s r-cran-bench r-bioc-scran r-cran-tinytest r-bioc-scrnaseq r-cran-rtsne 503s r-bioc-fishpond r-cran-devtools r-cran-roxygen2 r-cran-ff r-cran-covr 503s r-cran-spelling r-cran-rstudioapi r-cran-kernsmooth r-cran-kernlab 503s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis 503s r-cran-rmysql r-cran-lubridate r-cran-magick r-cran-sf r-cran-getopt 503s r-cran-interp r-cran-gam r-cran-formattable r-cran-nanotime 503s r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr 503s r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-here r-cran-plm 503s Recommended packages: 503s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 503s r-recommended r-doc-html r-cran-remotes r-cran-covr r-cran-thematic 503s r-cran-cliapp r-cran-mockery r-cran-rstudioapi r-cran-whoami r-cran-bench 503s r-cran-decor r-cran-lobstr r-cran-spelling r-cran-webutils 503s r-cran-rpostgresql r-cran-gh r-cran-broom r-cran-rmysql r-cran-future 503s r-cran-testit w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-survival 503s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 503s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 503s r-cran-svglite r-cran-vdiffr r-cran-cairo r-cran-markdown r-cran-jpeg 503s r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 503s r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr 503s r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-future.apply 503s r-cran-lubridate r-cran-mathjaxr r-cran-mockr r-cran-webfakes r-cran-pingr 503s r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit 503s r-cran-dbitest r-cran-gert r-cran-rvest r-cran-dichromat r-cran-data.table 503s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 503s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 503s x11-xserver-utils 503s The following NEW packages will be installed: 503s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 503s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 503s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 503s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 503s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 503s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 503s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 503s libblas-dev libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev 503s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev 503s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 503s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 503s libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 503s libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 libicu-dev 503s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 503s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 503s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 503s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 503s libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr 503s libjs-popper.js libjs-prettify libjs-sifter.js 503s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 503s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 503s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 503s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 503s libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev libsharpyuv0 libsm6 503s libsnappy1v5 libssl-dev libstdc++-13-dev libsz2 libtcl8.6 libthai-data 503s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 503s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 503s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 503s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 503s r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 503s r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 503s r-bioc-biocio r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart 503s r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats 503s r-bioc-deseq2 r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 503s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 503s r-bioc-glmgampoi r-bioc-hdf5array r-bioc-interactivedisplaybase 503s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 503s r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib 503s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 503s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats 503s r-bioc-summarizedexperiment r-bioc-tximeta r-bioc-tximport 503s r-bioc-tximportdata r-bioc-xvector r-bioc-zlibbioc r-cran-abind 503s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 503s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-brio r-cran-bslib 503s r-cran-cachem r-cran-callr r-cran-cli r-cran-clipr r-cran-codetools 503s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon 503s r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 503s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis 503s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 503s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 503s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 503s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets 503s r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite 503s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 503s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit 503s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 503s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 503s r-cran-pbapply r-cran-pheatmap r-cran-pillar r-cran-pkgbuild 503s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png 503s r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 503s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 503s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl 503s r-cran-readr r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang 503s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales 503s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 503s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 503s r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite 503s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 503s r-cran-xtable r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip 503s zlib1g-dev 504s 0 upgraded, 323 newly installed, 0 to remove and 0 not upgraded. 504s 1 not fully installed or removed. 504s Need to get 349 MB of archives. 504s After this operation, 1189 MB of additional disk space will be used. 504s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 504s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 504s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 504s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 504s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 504s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 504s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 504s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 504s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 504s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 504s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 504s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 504s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 504s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 504s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 504s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 504s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 504s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 504s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 504s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 504s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 504s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 504s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 504s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 504s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 504s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 504s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 504s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 504s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 504s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 505s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 505s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 505s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 505s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 505s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 505s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 505s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 505s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 505s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 505s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 505s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 505s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 505s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 505s Get:44 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 505s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 505s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 505s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 505s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 505s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 505s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 506s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 506s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 506s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 506s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 506s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 506s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 506s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 506s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 506s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 506s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 506s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 506s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 506s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 506s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 506s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 506s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 506s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 506s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 506s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 506s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 506s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 506s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 506s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 506s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 506s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 506s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 506s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 506s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 506s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 506s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 506s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 506s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 507s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 507s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 507s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 507s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 507s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 507s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 507s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 507s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 507s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 507s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 507s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 507s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 507s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 507s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 507s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 507s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 507s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 507s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 507s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 507s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 508s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 508s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 508s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 508s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 508s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 508s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 508s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 508s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 508s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 508s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 508s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 508s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 508s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 508s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 508s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 508s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 508s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 508s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 508s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 508s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 508s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 508s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 509s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.1.0-1 [859 kB] 509s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq2 arm64 1.42.0+dfsg-1 [1218 kB] 509s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 509s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 509s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 509s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 509s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 509s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 509s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 509s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 509s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 509s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 509s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 509s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 509s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 509s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 509s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 509s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 509s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 509s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 509s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 509s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 509s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 509s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 509s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 509s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 509s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 509s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 509s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 509s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 509s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 509s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 509s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 509s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 509s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 509s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 509s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 509s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 509s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 509s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 509s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 509s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 509s Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 509s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 509s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 509s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 509s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 509s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 509s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 509s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 509s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 509s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 509s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 509s Get:178 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 509s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 509s Get:180 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 510s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 510s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 510s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 510s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 510s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 510s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 510s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 510s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 510s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 510s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 510s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 510s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 510s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 510s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 510s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 510s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 510s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 510s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pheatmap all 1.0.12-2build1 [78.2 kB] 510s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-tximport all 1.30.0+dfsg-1 [89.5 kB] 510s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 510s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 510s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 511s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 511s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 511s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 511s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 511s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 511s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 511s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 512s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pbapply all 1.7-2-1 [102 kB] 512s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 512s Get:212 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 512s Get:213 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 512s Get:214 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 512s Get:215 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 513s Get:216 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 513s Get:217 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 513s Get:218 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 513s Get:219 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 513s Get:220 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 514s Get:221 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 514s Get:222 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 514s Get:223 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 514s Get:224 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 514s Get:225 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 514s Get:226 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 514s Get:227 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 514s Get:228 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 514s Get:229 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 514s Get:230 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 515s Get:231 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 515s Get:232 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 515s Get:233 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 515s Get:234 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 515s Get:235 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 515s Get:236 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 515s Get:237 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 515s Get:238 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 515s Get:239 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 515s Get:240 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 515s Get:241 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 515s Get:242 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 515s Get:243 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 515s Get:244 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 515s Get:245 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 515s Get:246 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 515s Get:247 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 515s Get:248 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 515s Get:249 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 515s Get:250 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 515s Get:251 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 515s Get:252 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 515s Get:253 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 515s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 515s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 515s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 516s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 516s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 516s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 516s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 516s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 516s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 516s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 516s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 516s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 516s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 516s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 516s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 516s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 516s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 517s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 517s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 517s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 517s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 517s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 517s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 517s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 517s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 517s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 517s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 518s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 518s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 518s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 518s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 518s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 518s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 518s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 518s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 518s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 518s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 518s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 518s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 518s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 518s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 518s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 518s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 518s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 518s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-tximeta all 1.20.3+dfsg-1 [502 kB] 518s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-tximportdata all 1.30.0+ds-1 [9352 B] 518s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsematrixstats arm64 1.14.0+dfsg-1 [815 kB] 518s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 518s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 518s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 518s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 519s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-fortran-102 arm64 1.10.10+repack-3ubuntu1 [86.3 kB] 519s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 519s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.10+repack-3ubuntu1 [30.7 kB] 519s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-cpp-103-1 arm64 1.10.10+repack-3ubuntu1 [120 kB] 519s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-cpp-100 arm64 1.10.10+repack-3ubuntu1 [10.7 kB] 519s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 519s Get:311 http://ftpmaster.internal/ubuntu noble/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu2 [454 kB] 519s Get:312 http://ftpmaster.internal/ubuntu noble/main arm64 libssl-dev arm64 3.0.10-1ubuntu4 [2330 kB] 519s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 hdf5-helpers arm64 1.10.10+repack-3ubuntu1 [15.5 kB] 519s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-dev arm64 1.10.10+repack-3ubuntu1 [3036 kB] 519s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5lib arm64 1.24.2+dfsg-1 [96.1 kB] 519s Get:316 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 519s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 519s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5filters arm64 1.14.1+dfsg-3 [135 kB] 519s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5 arm64 2.46.1+dfsg-1 [805 kB] 519s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-hdf5array arm64 1.30.1-1 [8757 kB] 520s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 520s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-beachmat arm64 2.18.1+ds-1 [1561 kB] 520s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-glmgampoi arm64 1.14.3+dfsg-1 [1192 kB] 523s Preconfiguring packages ... 523s Fetched 349 MB in 16s (21.3 MB/s) 523s Selecting previously unselected package zip. 523s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75418 files and directories currently installed.) 523s Preparing to unpack .../000-zip_3.0-13_arm64.deb ... 523s Unpacking zip (3.0-13) ... 523s Selecting previously unselected package unzip. 523s Preparing to unpack .../001-unzip_6.0-28ubuntu3_arm64.deb ... 523s Unpacking unzip (6.0-28ubuntu3) ... 523s Selecting previously unselected package libpaper1:arm64. 523s Preparing to unpack .../002-libpaper1_1.1.29_arm64.deb ... 523s Unpacking libpaper1:arm64 (1.1.29) ... 523s Selecting previously unselected package libpaper-utils. 523s Preparing to unpack .../003-libpaper-utils_1.1.29_arm64.deb ... 523s Unpacking libpaper-utils (1.1.29) ... 523s Selecting previously unselected package xdg-utils. 523s Preparing to unpack .../004-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 523s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 523s Selecting previously unselected package libblas3:arm64. 523s Preparing to unpack .../005-libblas3_3.12.0-3_arm64.deb ... 523s Unpacking libblas3:arm64 (3.12.0-3) ... 523s Selecting previously unselected package fonts-dejavu-mono. 523s Preparing to unpack .../006-fonts-dejavu-mono_2.37-8_all.deb ... 523s Unpacking fonts-dejavu-mono (2.37-8) ... 523s Selecting previously unselected package fonts-dejavu-core. 523s Preparing to unpack .../007-fonts-dejavu-core_2.37-8_all.deb ... 524s Unpacking fonts-dejavu-core (2.37-8) ... 524s Selecting previously unselected package fontconfig-config. 524s Preparing to unpack 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524s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 524s Selecting previously unselected package libcairo2:arm64. 524s Preparing to unpack .../014-libcairo2_1.18.0-1_arm64.deb ... 524s Unpacking libcairo2:arm64 (1.18.0-1) ... 524s Selecting previously unselected package libgomp1:arm64. 524s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 524s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 524s Selecting previously unselected package libjpeg-turbo8:arm64. 524s Preparing to unpack .../016-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 524s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 525s Selecting previously unselected package libjpeg8:arm64. 525s Preparing to unpack .../017-libjpeg8_8c-2ubuntu11_arm64.deb ... 525s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 525s Selecting previously unselected package libgfortran5:arm64. 525s Preparing to unpack .../018-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 525s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 525s Selecting previously unselected package liblapack3:arm64. 525s Preparing to unpack .../019-liblapack3_3.12.0-3_arm64.deb ... 525s Unpacking liblapack3:arm64 (3.12.0-3) ... 525s Selecting previously unselected package fontconfig. 525s Preparing to unpack .../020-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 525s Unpacking fontconfig (2.15.0-1ubuntu1) ... 525s Selecting previously unselected package libgraphite2-3:arm64. 525s Preparing to unpack .../021-libgraphite2-3_1.3.14-2_arm64.deb ... 525s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 525s Selecting previously unselected package libharfbuzz0b:arm64. 525s Preparing to unpack .../022-libharfbuzz0b_8.3.0-2_arm64.deb ... 525s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 525s Selecting previously unselected package libthai-data. 525s Preparing to unpack .../023-libthai-data_0.1.29-2_all.deb ... 525s Unpacking libthai-data (0.1.29-2) ... 525s Selecting previously unselected package libdatrie1:arm64. 525s 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.../029-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 525s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 526s Selecting previously unselected package libdeflate0:arm64. 526s Preparing to unpack .../030-libdeflate0_1.19-1_arm64.deb ... 526s Unpacking libdeflate0:arm64 (1.19-1) ... 526s Selecting previously unselected package libjbig0:arm64. 526s Preparing to unpack .../031-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 526s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 526s Selecting previously unselected package liblerc4:arm64. 526s Preparing to unpack .../032-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 526s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 526s Selecting previously unselected package libsharpyuv0:arm64. 526s Preparing to unpack .../033-libsharpyuv0_1.3.2-0.4_arm64.deb ... 526s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 526s Selecting previously unselected package libwebp7:arm64. 526s Preparing to unpack .../034-libwebp7_1.3.2-0.4_arm64.deb ... 526s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 526s Selecting previously unselected package libtiff6:arm64. 526s Preparing to unpack .../035-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 526s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 526s Selecting previously unselected package libxft2:arm64. 526s Preparing to unpack .../036-libxft2_2.3.6-1_arm64.deb ... 526s Unpacking libxft2:arm64 (2.3.6-1) ... 526s Selecting previously unselected package x11-common. 526s Preparing to unpack .../037-x11-common_1%3a7.7+23ubuntu2_all.deb ... 526s Unpacking x11-common (1:7.7+23ubuntu2) ... 526s Selecting previously unselected package libxss1:arm64. 526s Preparing to unpack .../038-libxss1_1%3a1.2.3-1build2_arm64.deb ... 526s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 526s Selecting previously unselected package libtk8.6:arm64. 526s Preparing to unpack .../039-libtk8.6_8.6.13-2_arm64.deb ... 526s Unpacking libtk8.6:arm64 (8.6.13-2) ... 526s Selecting previously unselected package libice6:arm64. 526s Preparing to unpack .../040-libice6_2%3a1.0.10-1build2_arm64.deb ... 526s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 526s Selecting previously unselected package libsm6:arm64. 526s Preparing to unpack .../041-libsm6_2%3a1.2.3-1build2_arm64.deb ... 526s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 526s Selecting previously unselected package libxt6:arm64. 526s Preparing to unpack .../042-libxt6_1%3a1.2.1-1.1_arm64.deb ... 526s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 526s Selecting previously unselected package r-base-core. 526s Preparing to unpack .../043-r-base-core_4.3.2-1build1_arm64.deb ... 526s Unpacking r-base-core (4.3.2-1build1) ... 527s Selecting previously unselected package r-bioc-biocgenerics. 527s Preparing to unpack .../044-r-bioc-biocgenerics_0.48.1-2_all.deb ... 527s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 527s Selecting previously unselected package r-bioc-s4vectors. 527s Preparing to unpack .../045-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 527s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 527s Selecting previously unselected package r-bioc-iranges. 527s Preparing to unpack .../046-r-bioc-iranges_2.36.0-1_arm64.deb ... 527s Unpacking r-bioc-iranges (2.36.0-1) ... 527s Selecting previously unselected package r-cran-bitops. 527s Preparing to unpack .../047-r-cran-bitops_1.0-7-1_arm64.deb ... 527s Unpacking r-cran-bitops (1.0-7-1) ... 528s Selecting previously unselected package r-cran-rcurl. 528s Preparing to unpack .../048-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 528s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 528s Selecting previously unselected package r-bioc-genomeinfodbdata. 528s Preparing to unpack .../049-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 528s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 528s Selecting previously unselected package r-bioc-genomeinfodb. 528s Preparing to unpack .../050-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 528s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 528s Selecting previously unselected package libc-dev-bin. 528s Preparing to unpack .../051-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 528s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 528s Selecting previously unselected package linux-libc-dev:arm64. 528s Preparing to unpack .../052-linux-libc-dev_6.8.0-11.11_arm64.deb ... 528s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 528s Selecting previously unselected package libcrypt-dev:arm64. 528s Preparing to unpack .../053-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 528s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 529s Selecting previously unselected package libtirpc-dev:arm64. 529s Preparing to unpack .../054-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 529s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 529s Selecting previously unselected package libnsl-dev:arm64. 529s Preparing to unpack .../055-libnsl-dev_1.3.0-3_arm64.deb ... 529s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 529s Selecting previously unselected package rpcsvc-proto. 529s Preparing to unpack .../056-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 529s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 529s Selecting previously unselected package libc6-dev:arm64. 529s Preparing to unpack .../057-libc6-dev_2.39-0ubuntu2_arm64.deb ... 529s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 529s Selecting previously unselected package zlib1g-dev:arm64. 529s Preparing to unpack .../058-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 529s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 529s Selecting previously unselected package r-bioc-zlibbioc. 529s Preparing to unpack .../059-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 529s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 529s Selecting previously unselected package r-bioc-xvector. 529s Preparing to unpack .../060-r-bioc-xvector_0.42.0-1_arm64.deb ... 529s Unpacking r-bioc-xvector (0.42.0-1) ... 529s Selecting previously unselected package r-bioc-genomicranges. 529s Preparing to unpack .../061-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 529s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 529s Selecting previously unselected package r-cran-matrixstats. 529s Preparing to unpack .../062-r-cran-matrixstats_1.2.0-1_arm64.deb ... 529s Unpacking r-cran-matrixstats (1.2.0-1) ... 530s Selecting previously unselected package r-bioc-matrixgenerics. 530s Preparing to unpack .../063-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 530s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 530s Selecting previously unselected package r-bioc-biobase. 530s Preparing to unpack .../064-r-bioc-biobase_2.62.0-1_arm64.deb ... 530s Unpacking r-bioc-biobase (2.62.0-1) ... 530s Selecting previously unselected package r-cran-lattice. 530s Preparing to unpack .../065-r-cran-lattice_0.22-5-1_arm64.deb ... 530s Unpacking r-cran-lattice (0.22-5-1) ... 530s Selecting previously unselected package r-cran-matrix. 530s Preparing to unpack .../066-r-cran-matrix_1.6-5-1_arm64.deb ... 530s Unpacking r-cran-matrix (1.6-5-1) ... 530s Selecting previously unselected package r-cran-abind. 530s Preparing to unpack .../067-r-cran-abind_1.4-5-2_all.deb ... 530s Unpacking r-cran-abind (1.4-5-2) ... 530s Selecting previously unselected package r-cran-crayon. 530s Preparing to unpack .../068-r-cran-crayon_1.5.2-1_all.deb ... 530s Unpacking r-cran-crayon (1.5.2-1) ... 530s Selecting previously unselected package r-bioc-s4arrays. 530s Preparing to unpack .../069-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 530s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 530s Selecting previously unselected package r-bioc-sparsearray. 530s Preparing to unpack .../070-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 530s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 530s Selecting previously unselected package r-bioc-delayedarray. 530s Preparing to unpack .../071-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 530s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 530s Selecting previously unselected package r-bioc-summarizedexperiment. 530s Preparing to unpack .../072-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 530s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 531s Selecting previously unselected package r-cran-formatr. 531s Preparing to unpack .../073-r-cran-formatr_1.14-1_all.deb ... 531s Unpacking r-cran-formatr (1.14-1) ... 531s Selecting previously unselected package r-cran-lambda.r. 531s Preparing to unpack .../074-r-cran-lambda.r_1.2.4-2build1_all.deb ... 531s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 531s Selecting previously unselected package r-cran-futile.options. 531s Preparing to unpack .../075-r-cran-futile.options_1.0.1-3build1_all.deb ... 531s Unpacking r-cran-futile.options (1.0.1-3build1) ... 531s Selecting previously unselected package r-cran-futile.logger. 531s Preparing to unpack .../076-r-cran-futile.logger_1.4.3-4build1_all.deb ... 531s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 531s Selecting previously unselected package r-cran-snow. 531s Preparing to unpack .../077-r-cran-snow_1%3a0.4.4-2_all.deb ... 531s Unpacking r-cran-snow (1:0.4.4-2) ... 531s Selecting previously unselected package r-cran-codetools. 531s Preparing to unpack .../078-r-cran-codetools_0.2-19-1_all.deb ... 531s Unpacking r-cran-codetools (0.2-19-1) ... 531s Selecting previously unselected package libitm1:arm64. 531s Preparing to unpack .../079-libitm1_14-20240303-1ubuntu1_arm64.deb ... 531s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 531s Selecting previously unselected package libatomic1:arm64. 531s Preparing to unpack .../080-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 531s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 531s Selecting previously unselected package libasan8:arm64. 531s Preparing to unpack .../081-libasan8_14-20240303-1ubuntu1_arm64.deb ... 531s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 531s Selecting previously unselected package liblsan0:arm64. 531s Preparing to unpack .../082-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 531s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 531s Selecting previously unselected package libtsan2:arm64. 531s Preparing to unpack .../083-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 531s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 532s Selecting previously unselected package libubsan1:arm64. 532s Preparing to unpack .../084-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 532s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 532s Selecting previously unselected package libhwasan0:arm64. 532s Preparing to unpack .../085-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 532s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 532s Selecting previously unselected package libgcc-13-dev:arm64. 532s Preparing to unpack .../086-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 532s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 532s Selecting previously unselected package libstdc++-13-dev:arm64. 532s Preparing to unpack .../087-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 532s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 532s Selecting previously unselected package libboost1.83-dev:arm64. 533s Preparing to unpack .../088-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 533s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 538s Selecting previously unselected package libboost-dev:arm64. 538s Preparing to unpack .../089-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 538s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 539s Selecting previously unselected package r-cran-bh. 539s Preparing to unpack .../090-r-cran-bh_1.84.0-1_all.deb ... 539s Unpacking r-cran-bh (1.84.0-1) ... 539s Selecting previously unselected package r-cran-cpp11. 539s Preparing to unpack .../091-r-cran-cpp11_0.4.7-1_all.deb ... 539s Unpacking r-cran-cpp11 (0.4.7-1) ... 539s Selecting previously unselected package r-bioc-biocparallel. 539s Preparing to unpack .../092-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 539s Unpacking r-bioc-biocparallel (1.36.0-1) ... 539s Selecting previously unselected package r-cran-locfit. 539s Preparing to unpack .../093-r-cran-locfit_1.5-9.8-1_arm64.deb ... 539s Unpacking r-cran-locfit (1.5-9.8-1) ... 539s Selecting previously unselected package r-cran-cli. 539s Preparing to unpack .../094-r-cran-cli_3.6.2-1_arm64.deb ... 539s Unpacking r-cran-cli (3.6.2-1) ... 539s Selecting previously unselected package r-cran-glue. 539s Preparing to unpack .../095-r-cran-glue_1.7.0-1_arm64.deb ... 539s Unpacking r-cran-glue (1.7.0-1) ... 539s Selecting previously unselected package r-cran-rlang. 539s Preparing to unpack .../096-r-cran-rlang_1.1.3-1_arm64.deb ... 539s Unpacking r-cran-rlang (1.1.3-1) ... 539s Selecting previously unselected package r-cran-lifecycle. 539s Preparing to unpack .../097-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 539s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 539s Selecting previously unselected package r-cran-gtable. 539s Preparing to unpack .../098-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 539s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 539s Selecting previously unselected package r-cran-isoband. 539s Preparing to unpack .../099-r-cran-isoband_0.2.7-1_arm64.deb ... 539s Unpacking r-cran-isoband (0.2.7-1) ... 540s Selecting previously unselected package r-cran-mass. 540s Preparing to unpack .../100-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 540s Unpacking r-cran-mass (7.3-60.0.1-1) ... 540s Selecting previously unselected package r-cran-nlme. 540s Preparing to unpack .../101-r-cran-nlme_3.1.164-1_arm64.deb ... 540s Unpacking r-cran-nlme (3.1.164-1) ... 540s Selecting previously unselected package r-cran-mgcv. 540s Preparing to unpack .../102-r-cran-mgcv_1.9-1-1_arm64.deb ... 540s Unpacking r-cran-mgcv (1.9-1-1) ... 540s Selecting previously unselected package r-cran-farver. 540s Preparing to unpack .../103-r-cran-farver_2.1.1-1_arm64.deb ... 540s Unpacking r-cran-farver (2.1.1-1) ... 540s Selecting previously unselected package r-cran-labeling. 540s Preparing to unpack .../104-r-cran-labeling_0.4.3-1_all.deb ... 540s Unpacking r-cran-labeling (0.4.3-1) ... 540s Selecting previously unselected package r-cran-colorspace. 540s Preparing to unpack .../105-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 540s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 540s Selecting previously unselected package r-cran-munsell. 540s Preparing to unpack .../106-r-cran-munsell_0.5.0-2build1_all.deb ... 540s Unpacking r-cran-munsell (0.5.0-2build1) ... 540s Selecting previously unselected package r-cran-r6. 540s Preparing to unpack .../107-r-cran-r6_2.5.1-1_all.deb ... 540s Unpacking r-cran-r6 (2.5.1-1) ... 540s Selecting previously unselected package r-cran-rcolorbrewer. 540s Preparing to unpack .../108-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 540s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 540s Selecting previously unselected package r-cran-viridislite. 540s Preparing to unpack .../109-r-cran-viridislite_0.4.2-2_all.deb ... 540s Unpacking r-cran-viridislite (0.4.2-2) ... 541s Selecting previously unselected package r-cran-scales. 541s Preparing to unpack .../110-r-cran-scales_1.3.0-1_all.deb ... 541s Unpacking r-cran-scales (1.3.0-1) ... 541s Selecting previously unselected package r-cran-fansi. 541s Preparing to unpack .../111-r-cran-fansi_1.0.5-1_arm64.deb ... 541s Unpacking r-cran-fansi (1.0.5-1) ... 541s Selecting previously unselected package r-cran-magrittr. 541s Preparing to unpack .../112-r-cran-magrittr_2.0.3-1_arm64.deb ... 541s Unpacking r-cran-magrittr (2.0.3-1) ... 541s Selecting previously unselected package r-cran-utf8. 541s Preparing to unpack .../113-r-cran-utf8_1.2.4-1_arm64.deb ... 541s Unpacking r-cran-utf8 (1.2.4-1) ... 541s Selecting previously unselected package r-cran-vctrs. 541s Preparing to unpack .../114-r-cran-vctrs_0.6.5-1_arm64.deb ... 541s Unpacking r-cran-vctrs (0.6.5-1) ... 541s Selecting previously unselected package r-cran-pillar. 541s Preparing to unpack .../115-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 541s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 541s Selecting previously unselected package r-cran-pkgconfig. 541s Preparing to unpack .../116-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 541s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 541s Selecting previously unselected package r-cran-tibble. 541s Preparing to unpack .../117-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 541s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 541s Selecting previously unselected package r-cran-withr. 541s Preparing to unpack .../118-r-cran-withr_2.5.0-1_all.deb ... 541s Unpacking r-cran-withr (2.5.0-1) ... 541s Selecting previously unselected package r-cran-ggplot2. 541s Preparing to unpack .../119-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 542s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 542s Selecting previously unselected package r-cran-littler. 542s Preparing to unpack .../120-r-cran-littler_0.3.19-1_arm64.deb ... 542s Unpacking r-cran-littler (0.3.19-1) ... 542s Selecting previously unselected package littler. 542s Preparing to unpack .../121-littler_0.3.19-1_all.deb ... 542s Unpacking littler (0.3.19-1) ... 542s Selecting previously unselected package r-cran-pkgkitten. 542s Preparing to unpack .../122-r-cran-pkgkitten_0.2.3-1_all.deb ... 542s Unpacking r-cran-pkgkitten (0.2.3-1) ... 542s Selecting previously unselected package r-cran-rcpp. 542s Preparing to unpack .../123-r-cran-rcpp_1.0.12-1_arm64.deb ... 542s Unpacking r-cran-rcpp (1.0.12-1) ... 543s Selecting previously unselected package r-cran-rcpparmadillo. 543s Preparing to unpack .../124-r-cran-rcpparmadillo_0.12.8.1.0-1_arm64.deb ... 543s Unpacking r-cran-rcpparmadillo (0.12.8.1.0-1) ... 543s Selecting previously unselected package r-bioc-deseq2. 543s Preparing to unpack .../125-r-bioc-deseq2_1.42.0+dfsg-1_arm64.deb ... 543s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 543s Selecting previously unselected package r-cran-brio. 543s Preparing to unpack .../126-r-cran-brio_1.1.4-1_arm64.deb ... 543s Unpacking r-cran-brio (1.1.4-1) ... 543s Selecting previously unselected package r-cran-ps. 543s Preparing to unpack .../127-r-cran-ps_1.7.6-1_arm64.deb ... 543s Unpacking r-cran-ps (1.7.6-1) ... 543s Selecting previously unselected package r-cran-processx. 543s Preparing to unpack .../128-r-cran-processx_3.8.3-1_arm64.deb ... 543s Unpacking r-cran-processx (3.8.3-1) ... 543s Selecting previously unselected package r-cran-callr. 543s Preparing to unpack .../129-r-cran-callr_3.7.3-2_all.deb ... 543s Unpacking r-cran-callr (3.7.3-2) ... 543s Selecting previously unselected package r-cran-desc. 543s Preparing to unpack .../130-r-cran-desc_1.4.3-1_all.deb ... 543s Unpacking r-cran-desc (1.4.3-1) ... 543s Selecting previously unselected package r-cran-digest. 543s Preparing to unpack .../131-r-cran-digest_0.6.34-1_arm64.deb ... 543s Unpacking r-cran-digest (0.6.34-1) ... 544s Selecting previously unselected package r-cran-evaluate. 544s Preparing to unpack .../132-r-cran-evaluate_0.23-1_all.deb ... 544s Unpacking r-cran-evaluate (0.23-1) ... 544s Selecting previously unselected package r-cran-jsonlite. 544s Preparing to unpack .../133-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 544s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 544s Selecting previously unselected package r-cran-fs. 544s Preparing to unpack .../134-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 544s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 544s Selecting previously unselected package r-cran-pkgbuild. 544s Preparing to unpack .../135-r-cran-pkgbuild_1.4.3-1_all.deb ... 544s Unpacking r-cran-pkgbuild (1.4.3-1) ... 544s Selecting previously unselected package r-cran-rprojroot. 544s Preparing to unpack .../136-r-cran-rprojroot_2.0.4-1_all.deb ... 544s Unpacking r-cran-rprojroot (2.0.4-1) ... 544s Selecting previously unselected package r-cran-pkgload. 544s Preparing to unpack .../137-r-cran-pkgload_1.3.4-1_all.deb ... 544s Unpacking r-cran-pkgload (1.3.4-1) ... 544s Selecting previously unselected package r-cran-praise. 544s Preparing to unpack .../138-r-cran-praise_1.0.0-4build1_all.deb ... 544s Unpacking r-cran-praise (1.0.0-4build1) ... 544s Selecting previously unselected package r-cran-diffobj. 544s Preparing to unpack .../139-r-cran-diffobj_0.3.5-1_arm64.deb ... 544s Unpacking r-cran-diffobj (0.3.5-1) ... 544s Selecting previously unselected package r-cran-rematch2. 544s Preparing to unpack .../140-r-cran-rematch2_2.1.2-2build1_all.deb ... 544s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 544s Selecting previously unselected package r-cran-waldo. 544s Preparing to unpack .../141-r-cran-waldo_0.5.2-1build1_all.deb ... 544s Unpacking r-cran-waldo (0.5.2-1build1) ... 545s Selecting previously unselected package r-cran-testthat. 545s Preparing to unpack .../142-r-cran-testthat_3.2.1-1_arm64.deb ... 545s Unpacking r-cran-testthat (3.2.1-1) ... 545s Selecting previously unselected package r-cran-xfun. 545s Preparing to unpack .../143-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 545s Unpacking r-cran-xfun (0.41+dfsg-1) ... 545s Selecting previously unselected package libjs-highlight.js. 545s Preparing to unpack .../144-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 545s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 545s Selecting previously unselected package libjs-jquery. 545s Preparing to unpack .../145-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 545s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 545s Selecting previously unselected package r-cran-highr. 545s Preparing to unpack .../146-r-cran-highr_0.10+dfsg-1_all.deb ... 545s Unpacking r-cran-highr (0.10+dfsg-1) ... 545s Selecting previously unselected package r-cran-yaml. 545s Preparing to unpack .../147-r-cran-yaml_2.3.8-1_arm64.deb ... 545s Unpacking r-cran-yaml (2.3.8-1) ... 545s Selecting previously unselected package fonts-mathjax. 545s Preparing to unpack .../148-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 545s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 546s Selecting previously unselected package libjs-mathjax. 546s Preparing to unpack .../149-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 546s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 548s Selecting previously unselected package fonts-glyphicons-halflings. 548s Preparing to unpack .../150-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 548s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 548s Selecting previously unselected package libjs-bootstrap. 548s Preparing to unpack .../151-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 548s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 548s Selecting previously unselected package libjs-jquery-datatables. 548s Preparing to unpack .../152-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 548s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 548s Selecting previously unselected package node-normalize.css. 548s Preparing to unpack .../153-node-normalize.css_8.0.1-5_all.deb ... 548s Unpacking node-normalize.css (8.0.1-5) ... 548s Selecting previously unselected package r-cran-knitr. 548s Preparing to unpack .../154-r-cran-knitr_1.45+dfsg-1_all.deb ... 548s Unpacking r-cran-knitr (1.45+dfsg-1) ... 549s Selecting previously unselected package r-cran-base64enc. 549s Preparing to unpack .../155-r-cran-base64enc_0.1-3-3_arm64.deb ... 549s Unpacking r-cran-base64enc (0.1-3-3) ... 549s Selecting previously unselected package r-cran-fastmap. 549s Preparing to unpack .../156-r-cran-fastmap_1.1.1-1_arm64.deb ... 549s Unpacking r-cran-fastmap (1.1.1-1) ... 549s Selecting previously unselected package r-cran-cachem. 549s Preparing to unpack .../157-r-cran-cachem_1.0.8-1_arm64.deb ... 549s Unpacking r-cran-cachem (1.0.8-1) ... 549s Selecting previously unselected package r-cran-ellipsis. 549s Preparing to unpack .../158-r-cran-ellipsis_0.3.2-2_arm64.deb ... 549s Unpacking r-cran-ellipsis (0.3.2-2) ... 549s Selecting previously unselected package r-cran-htmltools. 549s Preparing to unpack .../159-r-cran-htmltools_0.5.7-1_arm64.deb ... 549s Unpacking r-cran-htmltools (0.5.7-1) ... 549s Selecting previously unselected package r-cran-jquerylib. 549s Preparing to unpack .../160-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 549s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 549s Selecting previously unselected package r-cran-memoise. 549s Preparing to unpack .../161-r-cran-memoise_2.0.1-1_all.deb ... 549s Unpacking r-cran-memoise (2.0.1-1) ... 549s Selecting previously unselected package r-cran-mime. 549s Preparing to unpack .../162-r-cran-mime_0.12-1_arm64.deb ... 549s Unpacking r-cran-mime (0.12-1) ... 549s Selecting previously unselected package r-cran-rappdirs. 549s Preparing to unpack .../163-r-cran-rappdirs_0.3.3-1_arm64.deb ... 549s Unpacking r-cran-rappdirs (0.3.3-1) ... 549s Selecting previously unselected package r-cran-sass. 549s Preparing to unpack .../164-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 549s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 549s Selecting previously unselected package node-bootstrap-sass. 549s Preparing to unpack .../165-node-bootstrap-sass_3.4.3-2_all.deb ... 549s Unpacking node-bootstrap-sass (3.4.3-2) ... 550s Selecting previously unselected package javascript-common. 550s Preparing to unpack .../166-javascript-common_11+nmu1_all.deb ... 550s Unpacking javascript-common (11+nmu1) ... 550s Selecting previously unselected package libjs-popper.js. 550s Preparing to unpack .../167-libjs-popper.js_1.16.1+ds-6_all.deb ... 550s Unpacking libjs-popper.js (1.16.1+ds-6) ... 550s Selecting previously unselected package libjs-bootstrap4. 550s Preparing to unpack .../168-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 550s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 550s Selecting previously unselected package r-cran-bslib. 550s Preparing to unpack .../169-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 550s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 550s Selecting previously unselected package r-cran-fontawesome. 550s Preparing to unpack .../170-r-cran-fontawesome_0.5.2-1_all.deb ... 550s Unpacking r-cran-fontawesome (0.5.2-1) ... 551s Selecting previously unselected package r-cran-stringi. 551s Preparing to unpack .../171-r-cran-stringi_1.8.3-1_arm64.deb ... 551s Unpacking r-cran-stringi (1.8.3-1) ... 551s Selecting previously unselected package r-cran-stringr. 551s Preparing to unpack .../172-r-cran-stringr_1.5.1-1_all.deb ... 551s Unpacking r-cran-stringr (1.5.1-1) ... 551s Selecting previously unselected package r-cran-tinytex. 551s Preparing to unpack .../173-r-cran-tinytex_0.49-1_all.deb ... 551s Unpacking r-cran-tinytex (0.49-1) ... 551s Selecting previously unselected package libjs-jquery-ui. 551s Preparing to unpack .../174-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 551s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 551s Selecting previously unselected package libjs-modernizr. 551s Preparing to unpack .../175-libjs-modernizr_2.6.2+ds1-5_all.deb ... 551s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 551s Selecting previously unselected package libjs-prettify. 551s Preparing to unpack .../176-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 551s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 551s Selecting previously unselected package fonts-font-awesome. 551s Preparing to unpack .../177-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 551s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 551s Selecting previously unselected package pandoc-data. 551s Preparing to unpack .../178-pandoc-data_3.1.3-1_all.deb ... 551s Unpacking pandoc-data (3.1.3-1) ... 552s Selecting previously unselected package liblua5.4-0:arm64. 552s Preparing to unpack .../179-liblua5.4-0_5.4.6-3_arm64.deb ... 552s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 552s Selecting previously unselected package pandoc. 552s Preparing to unpack .../180-pandoc_3.1.3+ds-2_arm64.deb ... 552s Unpacking pandoc (3.1.3+ds-2) ... 554s Selecting previously unselected package r-cran-later. 554s Preparing to unpack .../181-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 554s Unpacking r-cran-later (1.3.2+dfsg-1) ... 554s Selecting previously unselected package r-cran-promises. 554s Preparing to unpack .../182-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 554s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 554s Selecting previously unselected package r-cran-httpuv. 554s Preparing to unpack .../183-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 554s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 555s Selecting previously unselected package r-cran-xtable. 555s Preparing to unpack .../184-r-cran-xtable_1%3a1.8-4-2_all.deb ... 555s Unpacking r-cran-xtable (1:1.8-4-2) ... 555s Selecting previously unselected package r-cran-sourcetools. 555s Preparing to unpack .../185-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 555s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 555s Selecting previously unselected package r-cran-commonmark. 555s Preparing to unpack .../186-r-cran-commonmark_1.9.1-1_arm64.deb ... 555s Unpacking r-cran-commonmark (1.9.1-1) ... 555s Selecting previously unselected package libjs-json. 555s Preparing to unpack .../187-libjs-json_0~20221030+~1.0.8-1_all.deb ... 555s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 555s Selecting previously unselected package libjs-es5-shim. 555s Preparing to unpack .../188-libjs-es5-shim_4.6.7-2_all.deb ... 555s Unpacking libjs-es5-shim (4.6.7-2) ... 555s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 555s Preparing to unpack .../189-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 555s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 555s Selecting previously unselected package libjs-sifter.js. 555s Preparing to unpack .../190-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 555s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 555s Selecting previously unselected package libjs-microplugin.js. 555s Preparing to unpack .../191-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 555s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 555s Selecting previously unselected package libjs-jquery-selectize.js. 555s Preparing to unpack .../192-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 555s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 555s Selecting previously unselected package libjs-d3. 555s Preparing to unpack .../193-libjs-d3_3.5.17-4_all.deb ... 555s Unpacking libjs-d3 (3.5.17-4) ... 555s Selecting previously unselected package node-html5shiv. 555s Preparing to unpack .../194-node-html5shiv_3.7.3+dfsg-5_all.deb ... 555s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 556s Selecting previously unselected package r-cran-shiny. 556s Preparing to unpack .../195-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 556s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 556s Selecting previously unselected package r-cran-rmarkdown. 556s Preparing to unpack .../196-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 556s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 556s Selecting previously unselected package r-cran-pheatmap. 556s Preparing to unpack .../197-r-cran-pheatmap_1.0.12-2build1_all.deb ... 556s Unpacking r-cran-pheatmap (1.0.12-2build1) ... 556s Selecting previously unselected package r-bioc-tximport. 556s Preparing to unpack .../198-r-bioc-tximport_1.30.0+dfsg-1_all.deb ... 556s Unpacking r-bioc-tximport (1.30.0+dfsg-1) ... 556s Selecting previously unselected package r-cran-clipr. 556s Preparing to unpack .../199-r-cran-clipr_0.8.0-1_all.deb ... 556s Unpacking r-cran-clipr (0.8.0-1) ... 556s Selecting previously unselected package r-cran-hms. 556s Preparing to unpack .../200-r-cran-hms_1.1.3-1_all.deb ... 556s Unpacking r-cran-hms (1.1.3-1) ... 556s Selecting previously unselected package r-cran-bit. 556s Preparing to unpack .../201-r-cran-bit_4.0.5-1_arm64.deb ... 556s Unpacking r-cran-bit (4.0.5-1) ... 556s Selecting previously unselected package r-cran-bit64. 557s Preparing to unpack .../202-r-cran-bit64_4.0.5-1_arm64.deb ... 557s Unpacking r-cran-bit64 (4.0.5-1) ... 557s Selecting previously unselected package r-cran-tidyselect. 557s Preparing to unpack .../203-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 557s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 557s Selecting previously unselected package r-cran-tzdb. 557s Preparing to unpack .../204-r-cran-tzdb_0.4.0-2_arm64.deb ... 557s Unpacking r-cran-tzdb (0.4.0-2) ... 557s Selecting previously unselected package r-cran-prettyunits. 557s Preparing to unpack .../205-r-cran-prettyunits_1.2.0-1_all.deb ... 557s Unpacking r-cran-prettyunits (1.2.0-1) ... 557s Selecting previously unselected package r-cran-progress. 557s Preparing to unpack .../206-r-cran-progress_1.2.3-1_all.deb ... 557s Unpacking r-cran-progress (1.2.3-1) ... 557s Selecting previously unselected package r-cran-vroom. 557s Preparing to unpack .../207-r-cran-vroom_1.6.5-1_arm64.deb ... 557s Unpacking r-cran-vroom (1.6.5-1) ... 557s Selecting previously unselected package r-cran-readr. 557s Preparing to unpack .../208-r-cran-readr_2.1.5-1_arm64.deb ... 557s Unpacking r-cran-readr (2.1.5-1) ... 557s Selecting previously unselected package r-cran-pbapply. 557s Preparing to unpack .../209-r-cran-pbapply_1.7-2-1_all.deb ... 557s Unpacking r-cran-pbapply (1.7-2-1) ... 557s Selecting previously unselected package r-cran-biocmanager. 557s Preparing to unpack .../210-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 557s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 557s Selecting previously unselected package dctrl-tools. 557s Preparing to unpack .../211-dctrl-tools_2.24-3build2_arm64.deb ... 557s Unpacking dctrl-tools (2.24-3build2) ... 558s Selecting previously unselected package libisl23:arm64. 558s Preparing to unpack .../212-libisl23_0.26-3_arm64.deb ... 558s Unpacking libisl23:arm64 (0.26-3) ... 558s Selecting previously unselected package libmpc3:arm64. 558s Preparing to unpack .../213-libmpc3_1.3.1-1_arm64.deb ... 558s Unpacking libmpc3:arm64 (1.3.1-1) ... 558s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 558s Preparing to unpack .../214-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 558s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 558s Selecting previously unselected package cpp-13. 558s Preparing to unpack .../215-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 558s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 558s Selecting previously unselected package cpp-aarch64-linux-gnu. 558s Preparing to unpack .../216-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 558s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 558s Selecting previously unselected package cpp. 558s Preparing to unpack .../217-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 558s Unpacking cpp (4:13.2.0-7ubuntu1) ... 558s Selecting previously unselected package libcc1-0:arm64. 558s Preparing to unpack .../218-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 558s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 558s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 559s Preparing to unpack .../219-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 559s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 560s Selecting previously unselected package gcc-13. 560s Preparing to unpack .../220-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 560s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 560s Selecting previously unselected package gcc-aarch64-linux-gnu. 560s Preparing to unpack .../221-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 560s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 560s Selecting previously unselected package gcc. 560s Preparing to unpack .../222-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 560s Unpacking gcc (4:13.2.0-7ubuntu1) ... 560s Selecting previously unselected package g++-13-aarch64-linux-gnu. 560s Preparing to unpack .../223-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 560s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 560s Selecting previously unselected package g++-13. 560s Preparing to unpack .../224-g++-13_13.2.0-17ubuntu2_arm64.deb ... 560s Unpacking g++-13 (13.2.0-17ubuntu2) ... 560s Selecting previously unselected package g++-aarch64-linux-gnu. 560s Preparing to unpack .../225-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 560s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 560s Selecting previously unselected package g++. 561s Preparing to unpack .../226-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 561s Unpacking g++ (4:13.2.0-7ubuntu1) ... 561s Selecting previously unselected package build-essential. 561s Preparing to unpack .../227-build-essential_12.10ubuntu1_arm64.deb ... 561s Unpacking build-essential (12.10ubuntu1) ... 561s Selecting previously unselected package libgfortran-13-dev:arm64. 561s Preparing to unpack .../228-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 561s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 561s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 561s Preparing to unpack .../229-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 561s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 561s Selecting previously unselected package gfortran-13. 561s Preparing to unpack .../230-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 561s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 561s Selecting previously unselected package gfortran-aarch64-linux-gnu. 561s Preparing to unpack .../231-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 561s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 561s Selecting previously unselected package gfortran. 561s Preparing to unpack .../232-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 561s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 561s Selecting previously unselected package libblas-dev:arm64. 561s Preparing to unpack .../233-libblas-dev_3.12.0-3_arm64.deb ... 561s Unpacking libblas-dev:arm64 (3.12.0-3) ... 562s Selecting previously unselected package liblapack-dev:arm64. 562s Preparing to unpack .../234-liblapack-dev_3.12.0-3_arm64.deb ... 562s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 562s Selecting previously unselected package libncurses-dev:arm64. 562s Preparing to unpack .../235-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 562s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 562s Selecting previously unselected package libreadline-dev:arm64. 562s Preparing to unpack .../236-libreadline-dev_8.2-3_arm64.deb ... 562s Unpacking libreadline-dev:arm64 (8.2-3) ... 562s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 562s Preparing to unpack .../237-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 562s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 562s Selecting previously unselected package libjpeg8-dev:arm64. 562s Preparing to unpack .../238-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 562s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 562s Selecting previously unselected package libjpeg-dev:arm64. 562s Preparing to unpack .../239-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 562s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 562s Selecting previously unselected package libpcre2-16-0:arm64. 562s Preparing to unpack .../240-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 562s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 562s Selecting previously unselected package libpcre2-32-0:arm64. 562s Preparing to unpack .../241-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 562s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 563s Selecting previously unselected package libpcre2-posix3:arm64. 563s Preparing to unpack .../242-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 563s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 563s Selecting previously unselected package libpcre2-dev:arm64. 563s Preparing to unpack .../243-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 563s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 563s Selecting previously unselected package libpng-dev:arm64. 563s Preparing to unpack .../244-libpng-dev_1.6.43-1_arm64.deb ... 563s Unpacking libpng-dev:arm64 (1.6.43-1) ... 563s Selecting previously unselected package libbz2-dev:arm64. 563s Preparing to unpack .../245-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 563s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 563s Selecting previously unselected package liblzma-dev:arm64. 563s Preparing to unpack .../246-liblzma-dev_5.4.5-0.3_arm64.deb ... 563s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 563s Selecting previously unselected package icu-devtools. 563s Preparing to unpack .../247-icu-devtools_74.2-1ubuntu1_arm64.deb ... 563s Unpacking icu-devtools (74.2-1ubuntu1) ... 563s Selecting previously unselected package libicu-dev:arm64. 563s Preparing to unpack .../248-libicu-dev_74.2-1ubuntu1_arm64.deb ... 563s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 564s Selecting previously unselected package libpkgconf3:arm64. 564s Preparing to unpack .../249-libpkgconf3_1.8.1-2_arm64.deb ... 564s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 564s Selecting previously unselected package pkgconf-bin. 564s Preparing to unpack .../250-pkgconf-bin_1.8.1-2_arm64.deb ... 564s Unpacking pkgconf-bin (1.8.1-2) ... 564s Selecting previously unselected package pkgconf:arm64. 564s Preparing to unpack .../251-pkgconf_1.8.1-2_arm64.deb ... 564s Unpacking pkgconf:arm64 (1.8.1-2) ... 564s Selecting previously unselected package pkg-config:arm64. 564s Preparing to unpack .../252-pkg-config_1.8.1-2_arm64.deb ... 564s Unpacking pkg-config:arm64 (1.8.1-2) ... 564s Selecting previously unselected package r-base-dev. 564s Preparing to unpack .../253-r-base-dev_4.3.2-1build1_all.deb ... 564s Unpacking r-base-dev (4.3.2-1build1) ... 564s Selecting previously unselected package pkg-r-autopkgtest. 564s Preparing to unpack .../254-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 564s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 564s Selecting previously unselected package r-cran-dbi. 564s Preparing to unpack .../255-r-cran-dbi_1.2.2-1_all.deb ... 564s Unpacking r-cran-dbi (1.2.2-1) ... 564s Selecting previously unselected package r-cran-blob. 564s Preparing to unpack .../256-r-cran-blob_1.2.4-1_all.deb ... 564s Unpacking r-cran-blob (1.2.4-1) ... 565s Selecting previously unselected package r-cran-plogr. 565s Preparing to unpack .../257-r-cran-plogr_0.2.0-3build1_all.deb ... 565s Unpacking r-cran-plogr (0.2.0-3build1) ... 565s Selecting previously unselected package r-cran-rsqlite. 565s Preparing to unpack .../258-r-cran-rsqlite_2.3.4-1_arm64.deb ... 565s Unpacking r-cran-rsqlite (2.3.4-1) ... 565s Selecting previously unselected package r-cran-curl. 565s Preparing to unpack .../259-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 565s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 565s Selecting previously unselected package r-cran-sys. 565s Preparing to unpack .../260-r-cran-sys_3.4.2-1_arm64.deb ... 565s Unpacking r-cran-sys (3.4.2-1) ... 565s Selecting previously unselected package r-cran-askpass. 565s Preparing to unpack .../261-r-cran-askpass_1.2.0-1_arm64.deb ... 565s Unpacking r-cran-askpass (1.2.0-1) ... 565s Selecting previously unselected package r-cran-openssl. 565s Preparing to unpack .../262-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 565s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 565s Selecting previously unselected package r-cran-httr. 565s Preparing to unpack .../263-r-cran-httr_1.4.7+dfsg-1_all.deb ... 565s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 565s Selecting previously unselected package r-cran-png. 565s Preparing to unpack .../264-r-cran-png_0.1-8-1_arm64.deb ... 565s Unpacking r-cran-png (0.1-8-1) ... 565s Selecting previously unselected package r-bioc-biostrings. 565s Preparing to unpack .../265-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 565s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 566s Selecting previously unselected package r-bioc-keggrest. 566s Preparing to unpack .../266-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 566s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 566s Selecting previously unselected package r-bioc-annotationdbi. 566s Preparing to unpack .../267-r-bioc-annotationdbi_1.64.1-1_all.deb ... 566s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 566s Selecting previously unselected package r-bioc-biocio. 566s Preparing to unpack .../268-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 566s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 566s Selecting previously unselected package r-cran-xml. 566s Preparing to unpack .../269-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 566s Unpacking r-cran-xml (3.99-0.16.1-1) ... 566s Selecting previously unselected package r-bioc-rhtslib. 566s Preparing to unpack .../270-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 566s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 566s Selecting previously unselected package r-bioc-rsamtools. 566s Preparing to unpack .../271-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 566s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 567s Selecting previously unselected package r-bioc-genomicalignments. 567s Preparing to unpack .../272-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 567s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 567s Selecting previously unselected package r-cran-rjson. 567s Preparing to unpack .../273-r-cran-rjson_0.2.21-1_arm64.deb ... 567s Unpacking r-cran-rjson (0.2.21-1) ... 567s Selecting previously unselected package r-cran-restfulr. 567s Preparing to unpack .../274-r-cran-restfulr_0.0.15-1_arm64.deb ... 567s Unpacking r-cran-restfulr (0.0.15-1) ... 567s Selecting previously unselected package r-bioc-rtracklayer. 567s Preparing to unpack .../275-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 567s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 567s Selecting previously unselected package r-cran-generics. 567s Preparing to unpack .../276-r-cran-generics_0.1.3-1_all.deb ... 567s Unpacking r-cran-generics (0.1.3-1) ... 567s Selecting previously unselected package r-cran-dplyr. 567s Preparing to unpack .../277-r-cran-dplyr_1.1.4-1_arm64.deb ... 567s Unpacking r-cran-dplyr (1.1.4-1) ... 567s Selecting previously unselected package r-cran-purrr. 567s Preparing to unpack .../278-r-cran-purrr_1.0.2-1_arm64.deb ... 567s Unpacking r-cran-purrr (1.0.2-1) ... 567s Selecting previously unselected package r-cran-tidyr. 567s Preparing to unpack .../279-r-cran-tidyr_1.3.1-1_arm64.deb ... 567s Unpacking r-cran-tidyr (1.3.1-1) ... 568s Selecting previously unselected package r-cran-dbplyr. 568s Preparing to unpack .../280-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 568s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 568s Selecting previously unselected package r-cran-filelock. 568s Preparing to unpack .../281-r-cran-filelock_1.0.3-1_arm64.deb ... 568s Unpacking r-cran-filelock (1.0.3-1) ... 568s Selecting previously unselected package r-bioc-biocfilecache. 568s Preparing to unpack .../282-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 568s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 568s Selecting previously unselected package r-cran-xml2. 568s Preparing to unpack .../283-r-cran-xml2_1.3.6-1_arm64.deb ... 568s Unpacking r-cran-xml2 (1.3.6-1) ... 568s Selecting previously unselected package r-bioc-biomart. 568s Preparing to unpack .../284-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 568s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 568s Selecting previously unselected package r-bioc-genomicfeatures. 568s Preparing to unpack .../285-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 568s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 568s Selecting previously unselected package r-cran-lazyeval. 568s Preparing to unpack .../286-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 568s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 568s Selecting previously unselected package r-bioc-annotationfilter. 568s Preparing to unpack .../287-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 568s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 568s Selecting previously unselected package r-bioc-protgenerics. 568s Preparing to unpack .../288-r-bioc-protgenerics_1.34.0-1_all.deb ... 568s Unpacking r-bioc-protgenerics (1.34.0-1) ... 568s Selecting previously unselected package r-bioc-ensembldb. 569s Preparing to unpack .../289-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 569s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 569s Selecting previously unselected package r-bioc-biocversion. 569s Preparing to unpack .../290-r-bioc-biocversion_3.18.1-1_all.deb ... 569s Unpacking r-bioc-biocversion (3.18.1-1) ... 569s Selecting previously unselected package r-cran-htmlwidgets. 569s Preparing to unpack .../291-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 569s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 569s Selecting previously unselected package r-cran-crosstalk. 569s Preparing to unpack .../292-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 569s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 569s Selecting previously unselected package libjs-jquery-datatables-extensions. 569s Preparing to unpack .../293-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 569s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 569s Selecting previously unselected package r-cran-dt. 569s Preparing to unpack .../294-r-cran-dt_0.31+dfsg-1_all.deb ... 569s Unpacking r-cran-dt (0.31+dfsg-1) ... 569s Selecting previously unselected package r-bioc-interactivedisplaybase. 569s Preparing to unpack .../295-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 569s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 569s Selecting previously unselected package r-bioc-annotationhub. 569s Preparing to unpack .../296-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 569s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 569s Selecting previously unselected package r-bioc-tximeta. 569s Preparing to unpack .../297-r-bioc-tximeta_1.20.3+dfsg-1_all.deb ... 569s Unpacking r-bioc-tximeta (1.20.3+dfsg-1) ... 569s Selecting previously unselected package r-bioc-tximportdata. 569s Preparing to unpack .../298-r-bioc-tximportdata_1.30.0+ds-1_all.deb ... 569s Unpacking r-bioc-tximportdata (1.30.0+ds-1) ... 570s Selecting previously unselected package r-bioc-sparsematrixstats. 570s Preparing to unpack .../299-r-bioc-sparsematrixstats_1.14.0+dfsg-1_arm64.deb ... 570s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 570s Selecting previously unselected package r-bioc-delayedmatrixstats. 570s Preparing to unpack .../300-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 570s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 570s Selecting previously unselected package libaec0:arm64. 570s Preparing to unpack .../301-libaec0_1.1.2-1_arm64.deb ... 570s Unpacking libaec0:arm64 (1.1.2-1) ... 570s Selecting previously unselected package libsz2:arm64. 570s Preparing to unpack .../302-libsz2_1.1.2-1_arm64.deb ... 570s Unpacking libsz2:arm64 (1.1.2-1) ... 570s Selecting previously unselected package libhdf5-103-1:arm64. 570s Preparing to unpack .../303-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 570s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 570s Selecting previously unselected package libhdf5-fortran-102:arm64. 570s Preparing to unpack .../304-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_arm64.deb ... 570s Unpacking libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 570s Selecting previously unselected package libhdf5-hl-100:arm64. 570s Preparing to unpack .../305-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 570s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 570s Selecting previously unselected package libhdf5-hl-fortran-100:arm64. 570s Preparing to unpack .../306-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_arm64.deb ... 570s Unpacking libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 570s Selecting previously unselected package libhdf5-cpp-103-1:arm64. 570s Preparing to unpack .../307-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 570s Unpacking libhdf5-cpp-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 570s Selecting previously unselected package libhdf5-hl-cpp-100:arm64. 570s Preparing to unpack .../308-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_arm64.deb ... 570s Unpacking libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 570s Selecting previously unselected package libaec-dev:arm64. 570s Preparing to unpack .../309-libaec-dev_1.1.2-1_arm64.deb ... 570s Unpacking libaec-dev:arm64 (1.1.2-1) ... 570s Selecting previously unselected package libcurl4-openssl-dev:arm64. 570s Preparing to unpack .../310-libcurl4-openssl-dev_8.5.0-2ubuntu2_arm64.deb ... 570s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu2) ... 571s Selecting previously unselected package libssl-dev:arm64. 571s Preparing to unpack .../311-libssl-dev_3.0.10-1ubuntu4_arm64.deb ... 571s Unpacking libssl-dev:arm64 (3.0.10-1ubuntu4) ... 571s Selecting previously unselected package hdf5-helpers. 571s Preparing to unpack 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573s Setting up unzip (6.0-28ubuntu3) ... 573s Setting up x11-common (1:7.7+23ubuntu2) ... 575s Setting up node-html5shiv (3.7.3+dfsg-5) ... 575s Setting up libdeflate0:arm64 (1.19-1) ... 575s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 575s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 575s Setting up libxcb-shm0:arm64 (1.15-1) ... 575s Setting up libpaper-utils (1.1.29) ... 575s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 575s Setting up libjs-modernizr (2.6.2+ds1-5) ... 575s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 575s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 575s Setting up libaec0:arm64 (1.1.2-1) ... 575s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 575s Setting up libjs-es5-shim (4.6.7-2) ... 575s Setting up zip (3.0-13) ... 575s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 575s Setting up libblas3:arm64 (3.12.0-3) ... 575s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide 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auto mode 578s Setting up r-cran-labeling (0.4.3-1) ... 578s Setting up r-cran-sourcetools (0.1.7-1-1) ... 578s Setting up r-cran-futile.options (1.0.1-3build1) ... 578s Setting up r-cran-lattice (0.22-5-1) ... 578s Setting up r-cran-ps (1.7.6-1) ... 578s Setting up r-cran-nlme (3.1.164-1) ... 578s Setting up r-cran-farver (2.1.1-1) ... 578s Setting up r-cran-formatr (1.14-1) ... 578s Setting up r-cran-pbapply (1.7-2-1) ... 578s Setting up r-cran-xml (3.99-0.16.1-1) ... 578s Setting up r-cran-viridislite (0.4.2-2) ... 578s Setting up r-cran-locfit (1.5-9.8-1) ... 578s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 578s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 578s Setting up r-cran-lazyeval (0.2.2-1build1) ... 578s Setting up r-cran-clipr (0.8.0-1) ... 578s Setting up r-cran-commonmark (1.9.1-1) ... 578s Setting up r-cran-r6 (2.5.1-1) ... 578s Setting up r-cran-pkgkitten (0.2.3-1) ... 578s Setting up r-cran-magrittr (2.0.3-1) ... 578s Setting up 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... 578s Setting up r-cran-mime (0.12-1) ... 578s Setting up r-cran-praise (1.0.0-4build1) ... 578s Setting up r-cran-generics (0.1.3-1) ... 578s Setting up r-cran-base64enc (0.1-3-3) ... 578s Setting up r-cran-abind (1.4-5-2) ... 578s Setting up r-cran-digest (0.6.34-1) ... 578s Setting up r-cran-yaml (2.3.8-1) ... 578s Setting up r-cran-lambda.r (1.2.4-2build1) ... 578s Setting up r-bioc-protgenerics (1.34.0-1) ... 578s Setting up r-cran-evaluate (0.23-1) ... 578s Setting up r-cran-dbi (1.2.2-1) ... 578s Setting up r-cran-highr (0.10+dfsg-1) ... 578s Setting up r-cran-prettyunits (1.2.0-1) ... 578s Setting up r-cran-fansi (1.0.5-1) ... 578s Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 578s Setting up r-cran-mass (7.3-60.0.1-1) ... 578s Setting up r-cran-snow (1:0.4.4-2) ... 578s Setting up r-cran-glue (1.7.0-1) ... 578s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 578s Setting up r-cran-bit (4.0.5-1) ... 578s Setting up r-cran-xtable (1:1.8-4-2) ... 578s Setting up r-cran-cli (3.6.2-1) ... 578s Setting up gfortran (4:13.2.0-7ubuntu1) ... 578s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 578s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 578s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 578s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 578s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 578s Setting up r-cran-bitops (1.0-7-1) ... 578s Setting up r-bioc-biocversion (3.18.1-1) ... 578s Setting up r-cran-rprojroot (2.0.4-1) ... 578s Setting up r-cran-bit64 (4.0.5-1) ... 578s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 578s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 578s Setting up r-cran-askpass (1.2.0-1) ... 578s Setting up 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update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 578s Setting up r-cran-cachem (1.0.8-1) ... 578s Setting up build-essential (12.10ubuntu1) ... 578s Setting up r-cran-rcpparmadillo (0.12.8.1.0-1) ... 578s Setting up r-bioc-iranges (2.36.0-1) ... 578s Setting up r-cran-rjson (0.2.21-1) ... 578s Setting up r-cran-tzdb (0.4.0-2) ... 578s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 578s Setting up r-cran-restfulr (0.0.15-1) ... 578s Setting up r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 578s Setting up r-cran-vctrs (0.6.5-1) ... 578s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 578s Setting up r-cran-ellipsis (0.3.2-2) ... 578s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 578s Setting up r-base-dev (4.3.2-1build1) ... 578s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 578s Setting up r-cran-stringr (1.5.1-1) ... 578s Setting up r-bioc-biocparallel (1.36.0-1) ... 578s Setting up r-cran-callr (3.7.3-2) ... 578s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 578s Setting up r-cran-desc (1.4.3-1) ... 578s Setting up r-cran-xml2 (1.3.6-1) ... 578s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 578s Setting up r-cran-munsell (0.5.0-2build1) ... 578s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 578s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 578s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 578s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 578s Setting up r-cran-httr (1.4.7+dfsg-1) ... 578s Setting up r-cran-hms (1.1.3-1) ... 578s Setting up r-cran-scales (1.3.0-1) ... 578s Setting up r-cran-memoise (2.0.1-1) ... 578s Setting up r-cran-promises (1.2.1+dfsg-1) ... 578s Setting up r-cran-purrr (1.0.2-1) ... 578s Setting up r-cran-blob (1.2.4-1) ... 578s Setting up r-cran-htmltools (0.5.7-1) ... 578s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 578s Setting up r-bioc-xvector (0.42.0-1) ... 578s Setting up r-cran-pkgbuild (1.4.3-1) ... 578s Setting up r-cran-sass (0.4.8+dfsg-1) ... 578s Setting up r-cran-dplyr (1.1.4-1) ... 578s Setting up r-cran-rsqlite (2.3.4-1) ... 578s Setting up r-cran-progress (1.2.3-1) ... 578s Setting up r-cran-pheatmap (1.0.12-2build1) ... 578s Setting up r-cran-pkgload (1.3.4-1) ... 578s Setting up r-cran-vroom (1.6.5-1) ... 578s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 578s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 578s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 578s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 578s Setting up r-cran-rematch2 (2.1.2-2build1) ... 578s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 578s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 578s Setting up r-cran-fontawesome (0.5.2-1) ... 578s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 578s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 578s Setting up r-cran-readr (2.1.5-1) ... 578s Setting up r-cran-waldo (0.5.2-1build1) ... 578s Setting up r-cran-tidyr (1.3.1-1) ... 578s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 578s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 578s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 578s Setting up r-bioc-hdf5array (1.30.1-1) ... 578s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 578s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 578s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 578s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 578s Setting up r-bioc-annotationdbi (1.64.1-1) ... 578s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 578s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 578s Setting up r-cran-testthat (3.2.1-1) ... 578s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 578s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 578s Setting up r-bioc-beachmat (2.18.1+ds-1) ... 578s Setting up r-bioc-genomicalignments (1.38.2-1) ... 578s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 578s Setting up r-bioc-rtracklayer (1.62.0-1) ... 578s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 578s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 578s Setting up r-bioc-glmgampoi (1.14.3+dfsg-1) ... 578s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 578s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 578s Setting up r-cran-dt (0.31+dfsg-1) ... 578s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 578s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 578s Setting up r-bioc-tximeta (1.20.3+dfsg-1) ... 578s Setting up autopkgtest-satdep (0) ... 578s Processing triggers for man-db (2.12.0-3) ... 580s Processing triggers for install-info (7.1-3) ... 581s Processing triggers for libc-bin (2.39-0ubuntu2) ... 613s (Reading database ... 121016 files and directories currently installed.) 613s Removing autopkgtest-satdep (0) ... 615s autopkgtest [02:18:53]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 615s autopkgtest [02:18:53]: test pkg-r-autopkgtest: [----------------------- 615s Test: Try to load the R library DESeq2 615s 615s R version 4.3.2 (2023-10-31) -- "Eye Holes" 615s Copyright (C) 2023 The R Foundation for Statistical Computing 615s Platform: aarch64-unknown-linux-gnu (64-bit) 615s 615s R is free software and comes with ABSOLUTELY NO WARRANTY. 615s You are welcome to redistribute it under certain conditions. 615s Type 'license()' or 'licence()' for distribution details. 615s 615s R is a collaborative project with many contributors. 615s Type 'contributors()' for more information and 615s 'citation()' on how to cite R or R packages in publications. 615s 615s Type 'demo()' for some demos, 'help()' for on-line help, or 615s 'help.start()' for an HTML browser interface to help. 615s Type 'q()' to quit R. 615s 615s > library('DESeq2') 615s Loading required package: S4Vectors 615s Loading required package: stats4 616s Loading required package: BiocGenerics 617s 617s Attaching package: ‘BiocGenerics’ 617s 617s The following objects are masked from ‘package:stats’: 617s 617s IQR, mad, sd, var, xtabs 617s 617s The following objects are masked from ‘package:base’: 617s 617s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 617s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 617s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 617s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 617s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 617s table, tapply, union, unique, unsplit, which.max, which.min 617s 617s 617s Attaching package: ‘S4Vectors’ 617s 617s The following object is masked from ‘package:utils’: 617s 617s findMatches 617s 617s The following objects are masked from ‘package:base’: 617s 617s expand.grid, I, unname 617s 617s Loading required package: IRanges 620s Loading required package: GenomicRanges 620s Loading required package: GenomeInfoDb 622s Loading required package: SummarizedExperiment 622s Loading required package: MatrixGenerics 622s Loading required package: matrixStats 622s 622s Attaching package: ‘MatrixGenerics’ 622s 622s The following objects are masked from ‘package:matrixStats’: 622s 622s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 622s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 622s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 622s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 622s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 622s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 622s colWeightedMeans, colWeightedMedians, colWeightedSds, 622s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 622s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 622s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 622s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 622s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 622s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 622s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 622s rowWeightedSds, rowWeightedVars 622s 622s Loading required package: Biobase 623s Welcome to Bioconductor 623s 623s Vignettes contain introductory material; view with 623s 'browseVignettes()'. To cite Bioconductor, see 623s 'citation("Biobase")', and for packages 'citation("pkgname")'. 623s 623s 623s Attaching package: ‘Biobase’ 623s 623s The following object is masked from ‘package:MatrixGenerics’: 623s 623s rowMedians 623s 623s The following objects are masked from ‘package:matrixStats’: 623s 623s anyMissing, rowMedians 623s 635s > 635s > 635s Other tests are currently unsupported! 635s They will be progressively added. 635s autopkgtest [02:19:13]: test pkg-r-autopkgtest: -----------------------] 636s pkg-r-autopkgtest PASS 636s autopkgtest [02:19:14]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 636s autopkgtest [02:19:14]: @@@@@@@@@@@@@@@@@@@@ summary 636s pkg-r-autopkgtest PASS 652s Creating nova instance adt-noble-arm64-r-bioc-deseq2-20240307-020838-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240306.img (UUID fe83f9af-4e32-48b1-9e6a-30d9e6eedf79)...