0s autopkgtest [17:27:31]: starting date and time: 2024-03-16 17:27:31+0000 0s autopkgtest [17:27:31]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:27:31]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6bjxl4zr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-deseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-10.secgroup --name adt-noble-arm64-r-bioc-deseq-20240316-172731-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 69s autopkgtest [17:28:40]: testbed dpkg architecture: arm64 69s autopkgtest [17:28:40]: testbed apt version: 2.7.12 69s autopkgtest [17:28:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 69s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 70s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 70s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 70s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 70s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 70s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 70s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 70s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 70s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 70s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 70s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 70s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 70s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 72s Fetched 9060 kB in 2s (5362 kB/s) 72s Reading package lists... 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 76s Calculating upgrade... 76s The following packages will be REMOVED: 76s libglib2.0-0 libssl3 76s The following NEW packages will be installed: 76s libglib2.0-0t64 libssl3t64 xdg-user-dirs 76s The following packages have been kept back: 76s curl 76s The following packages will be upgraded: 76s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 76s ubuntu-minimal ubuntu-standard 76s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 76s Need to get 4613 kB of archives. 76s After this operation, 211 kB of additional disk space will be used. 76s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 76s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 77s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 77s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 77s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 77s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 77s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 77s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 77s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 77s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 77s Fetched 4613 kB in 1s (6615 kB/s) 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 78s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 78s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 78s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 78s udisks2 depends on libglib2.0-0 (>= 2.77.0). 78s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 78s python3-gi depends on libglib2.0-0 (>= 2.77.0). 78s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 78s netplan.io depends on libglib2.0-0 (>= 2.70.0). 78s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 78s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 78s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 78s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 78s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 78s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 78s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 78s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 78s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 78s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 78s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 78s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 78s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 78s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 78s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 78s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 78s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 78s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 78s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 78s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 78s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 78s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 78s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 78s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 78s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 78s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 78s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 78s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 78s fwupd depends on libglib2.0-0 (>= 2.79.0). 78s bolt depends on libglib2.0-0 (>= 2.56.0). 78s 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 78s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 78s Selecting previously unselected package libglib2.0-0t64:arm64. 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 78s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 78s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 78s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 78s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 78s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 78s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 78s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 78s wget depends on libssl3 (>= 3.0.0). 78s u-boot-tools depends on libssl3 (>= 3.0.0). 78s tnftp depends on libssl3 (>= 3.0.0). 78s tcpdump depends on libssl3 (>= 3.0.0). 78s systemd-resolved depends on libssl3 (>= 3.0.0). 78s systemd depends on libssl3 (>= 3.0.0). 78s sudo depends on libssl3 (>= 3.0.0). 78s sbsigntool depends on libssl3 (>= 3.0.0). 78s rsync depends on libssl3 (>= 3.0.0). 78s python3-cryptography depends on libssl3 (>= 3.0.0). 78s openssh-server depends on libssl3 (>= 3.0.10). 78s openssh-client depends on libssl3 (>= 3.0.10). 78s mtd-utils depends on libssl3 (>= 3.0.0). 78s mokutil depends on libssl3 (>= 3.0.0). 78s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 78s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 78s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 78s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 78s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 78s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 78s libnvme1 depends on libssl3 (>= 3.0.0). 78s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 78s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 78s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 78s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 78s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 78s kmod depends on libssl3 (>= 3.0.0). 78s dhcpcd-base depends on libssl3 (>= 3.0.0). 78s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 78s 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 78s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 78s Selecting previously unselected package libssl3t64:arm64. 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 78s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 78s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 79s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 79s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 79s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 79s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 79s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 79s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 79s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 79s Unpacking ubuntu-minimal (1.536) over (1.535) ... 79s Selecting previously unselected package xdg-user-dirs. 79s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 79s Unpacking xdg-user-dirs (0.18-1) ... 79s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 79s Unpacking ubuntu-standard (1.536) over (1.535) ... 79s Setting up ubuntu-minimal (1.536) ... 79s Setting up xdg-user-dirs (0.18-1) ... 79s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 79s Setting up libtirpc-common (1.3.4+ds-1.1) ... 79s Setting up ubuntu-standard (1.536) ... 79s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 79s No schema files found: doing nothing. 79s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 79s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 79s Setting up openssl (3.0.13-0ubuntu1) ... 79s Setting up readline-common (8.2-3.1) ... 79s Processing triggers for man-db (2.12.0-3) ... 80s Processing triggers for install-info (7.1-3) ... 80s Processing triggers for libc-bin (2.39-0ubuntu2) ... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 81s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 82s sh: Attempting to set up Debian/Ubuntu apt sources automatically 82s sh: Distribution appears to be Ubuntu 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s eatmydata is already the newest version (131-1). 83s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 83s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s dbus is already the newest version (1.14.10-4ubuntu1). 84s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s rng-tools-debian is already the newest version (2.4). 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s The following packages will be REMOVED: 86s cloud-init* python3-configobj* python3-debconf* 88s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 88s After this operation, 3252 kB disk space will be freed. 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 89s Removing cloud-init (24.1.1-0ubuntu1) ... 92s Removing python3-configobj (5.0.8-3) ... 93s Removing python3-debconf (1.5.86) ... 93s Processing triggers for man-db (2.12.0-3) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 93s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 94s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 94s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 94s invoke-rc.d: policy-rc.d denied execution of try-restart. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s linux-generic is already the newest version (6.8.0-11.11+1). 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 95s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 95s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 97s Reading package lists... 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Calculating upgrade... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s autopkgtest [17:29:11]: rebooting testbed after setup commands that affected boot 146s autopkgtest [17:29:57]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 149s autopkgtest [17:30:00]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-deseq 152s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-deseq 1.39.0-13 (dsc) [2184 B] 152s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-deseq 1.39.0-13 (tar) [1692 kB] 152s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-deseq 1.39.0-13 (diff) [3044 B] 153s gpgv: Signature made Thu Nov 30 19:12:37 2023 UTC 153s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 153s gpgv: issuer "tille@debian.org" 153s gpgv: Can't check signature: No public key 153s dpkg-source: warning: cannot verify inline signature for ./r-bioc-deseq_1.39.0-13.dsc: no acceptable signature found 153s autopkgtest [17:30:04]: testing package r-bioc-deseq version 1.39.0-13 153s autopkgtest [17:30:04]: build not needed 155s autopkgtest [17:30:06]: test pkg-r-autopkgtest: preparing testbed 156s Reading package lists... 157s Building dependency tree... 157s Reading state information... 157s Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 158s The following additional packages will be installed: 158s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 158s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 158s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 158s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 158s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 158s libasan8 libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev 158s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 158s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 158s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 158s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 158s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 158s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 158s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 158s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 158s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data 158s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 158s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 158s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 158s r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics 158s r-bioc-biostrings r-bioc-deseq r-bioc-genefilter r-bioc-geneplotter 158s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-keggrest 158s r-bioc-matrixgenerics r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc 158s r-cran-askpass r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 158s r-cran-cachem r-cran-catools r-cran-cli r-cran-cpp11 r-cran-crayon 158s r-cran-curl r-cran-dbi r-cran-fastmap r-cran-gdata r-cran-glue r-cran-gplots 158s r-cran-gtools r-cran-httr r-cran-jsonlite r-cran-kernsmooth r-cran-lattice 158s r-cran-lifecycle r-cran-locfit r-cran-mass r-cran-matrix r-cran-matrixstats 158s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-plogr 158s r-cran-png r-cran-r6 r-cran-rcolorbrewer r-cran-rcurl r-cran-rlang 158s r-cran-rsqlite r-cran-survival r-cran-sys r-cran-vctrs r-cran-xml 158s r-cran-xtable rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 158s Suggested packages: 158s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 158s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 158s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 158s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 158s libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib 158s r-base-html texlive-base texlive-latex-base texlive-plain-generic 158s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 158s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db 158s r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle r-cran-knitr 158s r-bioc-all r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools 158s r-bioc-affy r-bioc-deseq2 r-bioc-bsgenome r-bioc-genomicfeatures 158s r-cran-class r-cran-r.utils r-cran-data.table r-bioc-genomicalignments 158s r-cran-markdown r-bioc-sparsematrixstats r-bioc-sparsearray 158s r-bioc-delayedmatrixstats r-bioc-summarizedexperiment r-cran-testthat 158s r-bioc-shortread r-cran-roxygen2 r-cran-rmarkdown r-cran-ff r-cran-covr 158s r-cran-pillar r-cran-rpart r-cran-rstudioapi r-cran-rmysql r-cran-interp 158s r-cran-gam r-cran-digest r-cran-rcpp r-cran-spelling r-cran-plm r-cran-zoo 158s Recommended packages: 158s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended 158s r-doc-html r-cran-testthat r-cran-callr r-cran-covr r-cran-digest 158s r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-mockery 158s r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot 158s r-cran-rstudioapi r-cran-tibble r-cran-whoami r-cran-withr r-cran-bench 158s r-cran-brio r-cran-decor r-cran-desc r-cran-ggplot2 r-cran-lobstr 158s r-cran-progress r-cran-scales r-cran-rcpp r-cran-spelling r-cran-later 158s r-cran-magrittr r-cran-httpuv r-cran-webutils r-cran-dplyr r-cran-waldo 158s r-cran-jpeg r-cran-readr r-cran-xml2 r-cran-r.rsp r-cran-sf r-cran-lintr 158s r-cran-tidyverse r-cran-base64enc r-cran-markdown r-cran-r.devices 158s r-cran-sodium r-cran-fs r-cran-pillar r-cran-usethis r-cran-dbitest 158s r-cran-gert r-cran-gh r-cran-hms r-cran-rvest r-cran-generics r-cran-pkgdown 158s r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 158s x11-utils x11-xserver-utils 159s The following NEW packages will be installed: 159s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 159s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 159s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 159s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 159s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 159s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 159s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 159s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 159s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 159s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 159s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 159s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 159s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 159s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 159s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 159s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 159s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 159s linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 159s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 159s r-bioc-biocgenerics r-bioc-biostrings r-bioc-deseq r-bioc-genefilter 159s r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 159s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-s4vectors 159s r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bit r-cran-bit64 159s r-cran-bitops r-cran-blob r-cran-cachem r-cran-catools r-cran-cli 159s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap 159s r-cran-gdata r-cran-glue r-cran-gplots r-cran-gtools r-cran-httr 159s r-cran-jsonlite r-cran-kernsmooth r-cran-lattice r-cran-lifecycle 159s r-cran-locfit r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 159s r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-plogr r-cran-png 159s r-cran-r6 r-cran-rcolorbrewer r-cran-rcurl r-cran-rlang r-cran-rsqlite 159s r-cran-survival r-cran-sys r-cran-vctrs r-cran-xml r-cran-xtable 159s rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 159s 0 upgraded, 164 newly installed, 0 to remove and 0 not upgraded. 159s Need to get 208 MB/208 MB of archives. 159s After this operation, 529 MB of additional disk space will be used. 159s Get:1 /tmp/autopkgtest.hj8XN0/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [728 B] 159s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 159s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 160s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 160s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 160s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 160s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 160s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 160s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 160s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 160s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 160s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 160s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 160s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 160s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 160s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 160s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 160s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 160s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 160s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 160s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 160s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 160s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 160s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 160s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 161s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 161s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 161s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 161s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 161s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 161s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 161s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 161s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 161s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 161s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 161s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 161s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 161s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 161s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 161s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 161s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 161s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 161s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 161s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 161s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 161s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 161s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 161s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 161s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 161s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 161s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 161s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 161s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 161s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 162s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 162s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 162s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 162s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 162s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 162s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 162s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 162s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 162s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 162s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 162s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 162s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 162s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 162s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 162s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 162s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 162s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 162s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 162s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 162s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 162s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 162s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 162s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 162s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 162s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 162s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 162s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 162s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 162s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 162s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 162s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 162s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 162s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 162s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 162s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 162s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 162s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 162s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 162s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 162s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 162s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 162s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 162s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 162s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 162s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 162s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 162s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 162s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 162s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 164s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 164s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 164s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 164s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 164s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 164s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 164s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 164s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 164s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 164s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 164s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 164s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 164s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 164s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 164s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 164s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 164s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 164s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 164s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 164s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 164s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 164s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 164s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 164s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 164s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 164s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 164s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 164s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 164s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 164s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 164s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 164s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 164s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 164s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 165s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 165s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 165s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 165s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 165s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 165s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 166s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 166s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 166s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 166s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 166s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 166s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 166s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 166s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 166s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 166s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 166s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 166s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 166s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 166s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-geneplotter all 1.80.0+dfsg-1 [1416 kB] 166s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 166s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq arm64 1.39.0-13 [1993 kB] 167s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-catools arm64 1.18.2-1 [200 kB] 167s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtools arm64 3.9.5-1 [340 kB] 167s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gdata all 3.0.0-1 [483 kB] 167s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 167s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gplots all 3.1.3.1-1 [589 kB] 174s Preconfiguring packages ... 175s Fetched 208 MB in 8s (26.1 MB/s) 175s Selecting previously unselected package libc-dev-bin. 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 175s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 175s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 175s Selecting previously unselected package linux-libc-dev:arm64. 175s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 175s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 175s Selecting previously unselected package libcrypt-dev:arm64. 175s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 175s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 175s Selecting previously unselected package libtirpc-dev:arm64. 176s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 176s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 176s Selecting previously unselected package libnsl-dev:arm64. 176s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 176s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 176s Selecting previously unselected package rpcsvc-proto. 176s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 176s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 176s Selecting previously unselected package libc6-dev:arm64. 176s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 176s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 176s Selecting previously unselected package libisl23:arm64. 176s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 176s Unpacking libisl23:arm64 (0.26-3) ... 176s Selecting previously unselected package libmpc3:arm64. 176s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 176s Unpacking libmpc3:arm64 (1.3.1-1) ... 176s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 176s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 176s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 176s Selecting previously unselected package cpp-13. 176s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 176s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 176s Selecting previously unselected package cpp-aarch64-linux-gnu. 176s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 176s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 176s Selecting previously unselected package cpp. 176s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 176s Unpacking cpp (4:13.2.0-7ubuntu1) ... 176s Selecting previously unselected package libcc1-0:arm64. 176s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 176s Selecting previously unselected package libgomp1:arm64. 176s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libitm1:arm64. 177s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libatomic1:arm64. 177s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libasan8:arm64. 177s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package liblsan0:arm64. 177s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libtsan2:arm64. 177s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libubsan1:arm64. 177s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libhwasan0:arm64. 177s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libgcc-13-dev:arm64. 177s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 177s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 177s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 177s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 177s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 177s Selecting previously unselected package gcc-13. 178s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 178s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 178s Selecting previously unselected package gcc-aarch64-linux-gnu. 178s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 178s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 178s Selecting previously unselected package gcc. 178s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 178s Unpacking gcc (4:13.2.0-7ubuntu1) ... 178s Selecting previously unselected package libstdc++-13-dev:arm64. 178s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 178s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 178s Selecting previously unselected package g++-13-aarch64-linux-gnu. 178s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 178s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 178s Selecting previously unselected package g++-13. 179s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 179s Unpacking g++-13 (13.2.0-17ubuntu2) ... 179s Selecting previously unselected package g++-aarch64-linux-gnu. 179s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 179s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 179s Selecting previously unselected package g++. 179s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 179s Unpacking g++ (4:13.2.0-7ubuntu1) ... 179s Selecting previously unselected package build-essential. 179s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 179s Unpacking build-essential (12.10ubuntu1) ... 179s Selecting previously unselected package dctrl-tools. 179s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 179s Unpacking dctrl-tools (2.24-3build2) ... 179s Selecting previously unselected package fonts-dejavu-mono. 179s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 179s Unpacking fonts-dejavu-mono (2.37-8) ... 179s Selecting previously unselected package fonts-dejavu-core. 179s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 179s Unpacking fonts-dejavu-core (2.37-8) ... 179s Selecting previously unselected package fontconfig-config. 179s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 179s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 179s Selecting previously unselected package libfontconfig1:arm64. 179s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 179s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 179s Selecting previously unselected package fontconfig. 179s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 179s Unpacking fontconfig (2.15.0-1ubuntu1) ... 179s Selecting previously unselected package libgfortran5:arm64. 179s Preparing to unpack .../039-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 179s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 179s Selecting previously unselected package libgfortran-13-dev:arm64. 179s Preparing to unpack .../040-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 179s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 179s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 180s Preparing to unpack .../041-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 180s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 180s Selecting previously unselected package gfortran-13. 180s Preparing to unpack .../042-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 180s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 180s Selecting previously unselected package gfortran-aarch64-linux-gnu. 180s Preparing to unpack .../043-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 180s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 180s Selecting previously unselected package gfortran. 180s Preparing to unpack .../044-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 180s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 180s Selecting previously unselected package icu-devtools. 180s Preparing to unpack .../045-icu-devtools_74.2-1ubuntu1_arm64.deb ... 180s Unpacking icu-devtools (74.2-1ubuntu1) ... 180s Selecting previously unselected package libblas3:arm64. 180s Preparing to unpack .../046-libblas3_3.12.0-3_arm64.deb ... 180s Unpacking libblas3:arm64 (3.12.0-3) ... 180s Selecting previously unselected package libblas-dev:arm64. 180s Preparing to unpack .../047-libblas-dev_3.12.0-3_arm64.deb ... 180s Unpacking libblas-dev:arm64 (3.12.0-3) ... 180s Selecting previously unselected package libbz2-dev:arm64. 180s Preparing to unpack .../048-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 180s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 180s Selecting previously unselected package libpixman-1-0:arm64. 180s Preparing to unpack .../049-libpixman-1-0_0.42.2-1_arm64.deb ... 180s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 180s Selecting previously unselected package libxcb-render0:arm64. 180s Preparing to unpack .../050-libxcb-render0_1.15-1_arm64.deb ... 180s Unpacking libxcb-render0:arm64 (1.15-1) ... 180s Selecting previously unselected package libxcb-shm0:arm64. 180s Preparing to unpack .../051-libxcb-shm0_1.15-1_arm64.deb ... 180s Unpacking libxcb-shm0:arm64 (1.15-1) ... 180s Selecting previously unselected package libxrender1:arm64. 180s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 180s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 180s Selecting previously unselected package libcairo2:arm64. 180s Preparing to unpack .../053-libcairo2_1.18.0-1_arm64.deb ... 180s Unpacking libcairo2:arm64 (1.18.0-1) ... 180s Selecting previously unselected package libdatrie1:arm64. 180s Preparing to unpack .../054-libdatrie1_0.2.13-3_arm64.deb ... 180s Unpacking libdatrie1:arm64 (0.2.13-3) ... 180s Selecting previously unselected package libdeflate0:arm64. 180s Preparing to unpack .../055-libdeflate0_1.19-1_arm64.deb ... 180s Unpacking libdeflate0:arm64 (1.19-1) ... 180s Selecting previously unselected package libgraphite2-3:arm64. 180s Preparing to unpack .../056-libgraphite2-3_1.3.14-2_arm64.deb ... 180s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 180s Selecting previously unselected package libharfbuzz0b:arm64. 180s Preparing to unpack .../057-libharfbuzz0b_8.3.0-2_arm64.deb ... 180s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 180s Selecting previously unselected package x11-common. 180s Preparing to unpack .../058-x11-common_1%3a7.7+23ubuntu2_all.deb ... 180s Unpacking x11-common (1:7.7+23ubuntu2) ... 181s Selecting previously unselected package libice6:arm64. 181s Preparing to unpack .../059-libice6_2%3a1.0.10-1build2_arm64.deb ... 181s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 181s Selecting previously unselected package libicu-dev:arm64. 181s Preparing to unpack .../060-libicu-dev_74.2-1ubuntu1_arm64.deb ... 181s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 181s Selecting previously unselected package libjpeg-turbo8:arm64. 181s Preparing to unpack .../061-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 181s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 181s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 181s Preparing to unpack .../062-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 181s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 181s Selecting previously unselected package libjpeg8:arm64. 181s Preparing to unpack .../063-libjpeg8_8c-2ubuntu11_arm64.deb ... 181s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 181s Selecting previously unselected package libjpeg8-dev:arm64. 181s Preparing to unpack .../064-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 181s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 181s Selecting previously unselected package libjpeg-dev:arm64. 181s Preparing to unpack .../065-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 181s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 181s Selecting previously unselected package liblapack3:arm64. 181s Preparing to unpack .../066-liblapack3_3.12.0-3_arm64.deb ... 181s Unpacking liblapack3:arm64 (3.12.0-3) ... 181s Selecting previously unselected package liblapack-dev:arm64. 181s Preparing to unpack .../067-liblapack-dev_3.12.0-3_arm64.deb ... 181s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 181s Selecting previously unselected package liblerc4:arm64. 182s Preparing to unpack .../068-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 182s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 182s Selecting previously unselected package libncurses-dev:arm64. 182s Preparing to unpack .../069-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 182s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 182s Selecting previously unselected package libthai-data. 183s Preparing to unpack .../070-libthai-data_0.1.29-2_all.deb ... 183s Unpacking libthai-data (0.1.29-2) ... 183s Selecting previously unselected package libthai0:arm64. 183s Preparing to unpack .../071-libthai0_0.1.29-2_arm64.deb ... 183s Unpacking libthai0:arm64 (0.1.29-2) ... 183s Selecting previously unselected package libpango-1.0-0:arm64. 183s Preparing to unpack .../072-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 183s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 183s Selecting previously unselected package libpangoft2-1.0-0:arm64. 183s Preparing to unpack .../073-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 183s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 183s Selecting previously unselected package libpangocairo-1.0-0:arm64. 183s Preparing to unpack .../074-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 183s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 183s Selecting previously unselected package libpaper1:arm64. 183s Preparing to unpack .../075-libpaper1_1.1.29_arm64.deb ... 183s Unpacking libpaper1:arm64 (1.1.29) ... 183s Selecting previously unselected package libpaper-utils. 183s Preparing to unpack .../076-libpaper-utils_1.1.29_arm64.deb ... 183s Unpacking libpaper-utils (1.1.29) ... 183s Selecting previously unselected package libpcre2-16-0:arm64. 183s Preparing to unpack .../077-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 183s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 183s Selecting previously unselected package libpcre2-32-0:arm64. 183s Preparing to unpack .../078-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 183s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 183s Selecting previously unselected package libpcre2-posix3:arm64. 183s Preparing to unpack .../079-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 183s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 183s Selecting previously unselected package libpcre2-dev:arm64. 183s Preparing to unpack .../080-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 183s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 183s Selecting previously unselected package libpkgconf3:arm64. 184s Preparing to unpack .../081-libpkgconf3_1.8.1-2_arm64.deb ... 184s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 184s Selecting previously unselected package zlib1g-dev:arm64. 184s Preparing to unpack .../082-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 184s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 184s Selecting previously unselected package libpng-dev:arm64. 184s Preparing to unpack .../083-libpng-dev_1.6.43-1_arm64.deb ... 184s Unpacking libpng-dev:arm64 (1.6.43-1) ... 184s Selecting previously unselected package libreadline-dev:arm64. 184s Preparing to unpack .../084-libreadline-dev_8.2-3_arm64.deb ... 184s Unpacking libreadline-dev:arm64 (8.2-3) ... 184s Selecting previously unselected package libsharpyuv0:arm64. 184s Preparing to unpack .../085-libsharpyuv0_1.3.2-0.4_arm64.deb ... 184s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 184s Selecting previously unselected package libsm6:arm64. 184s Preparing to unpack .../086-libsm6_2%3a1.2.3-1build2_arm64.deb ... 184s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 184s Selecting previously unselected package libtcl8.6:arm64. 184s Preparing to unpack .../087-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 184s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 184s Selecting previously unselected package libjbig0:arm64. 184s Preparing to unpack .../088-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 184s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 184s Selecting previously unselected package libwebp7:arm64. 184s Preparing to unpack .../089-libwebp7_1.3.2-0.4_arm64.deb ... 184s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 184s Selecting previously unselected package libtiff6:arm64. 184s Preparing to unpack .../090-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 184s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 184s Selecting previously unselected package libxft2:arm64. 184s Preparing to unpack .../091-libxft2_2.3.6-1_arm64.deb ... 184s Unpacking libxft2:arm64 (2.3.6-1) ... 184s Selecting previously unselected package libxss1:arm64. 184s Preparing to unpack .../092-libxss1_1%3a1.2.3-1build2_arm64.deb ... 184s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 184s Selecting previously unselected package libtk8.6:arm64. 184s Preparing to unpack .../093-libtk8.6_8.6.13-2_arm64.deb ... 184s Unpacking libtk8.6:arm64 (8.6.13-2) ... 184s Selecting previously unselected package libxt6:arm64. 184s Preparing to unpack .../094-libxt6_1%3a1.2.1-1.1_arm64.deb ... 184s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 184s Selecting previously unselected package pkgconf-bin. 184s Preparing to unpack .../095-pkgconf-bin_1.8.1-2_arm64.deb ... 184s Unpacking pkgconf-bin (1.8.1-2) ... 184s Selecting previously unselected package pkgconf:arm64. 184s Preparing to unpack .../096-pkgconf_1.8.1-2_arm64.deb ... 184s Unpacking pkgconf:arm64 (1.8.1-2) ... 184s Selecting previously unselected package pkg-config:arm64. 184s Preparing to unpack .../097-pkg-config_1.8.1-2_arm64.deb ... 184s Unpacking pkg-config:arm64 (1.8.1-2) ... 184s Selecting previously unselected package zip. 184s Preparing to unpack .../098-zip_3.0-13_arm64.deb ... 184s Unpacking zip (3.0-13) ... 184s Selecting previously unselected package unzip. 184s Preparing to unpack .../099-unzip_6.0-28ubuntu3_arm64.deb ... 184s Unpacking unzip (6.0-28ubuntu3) ... 184s Selecting previously unselected package xdg-utils. 184s Preparing to unpack .../100-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 184s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 184s Selecting previously unselected package r-base-core. 184s Preparing to unpack .../101-r-base-core_4.3.2-1build1_arm64.deb ... 184s Unpacking r-base-core (4.3.2-1build1) ... 185s Selecting previously unselected package liblzma-dev:arm64. 185s Preparing to unpack .../102-liblzma-dev_5.4.5-0.3_arm64.deb ... 185s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 185s Selecting previously unselected package r-base-dev. 185s Preparing to unpack .../103-r-base-dev_4.3.2-1build1_all.deb ... 185s Unpacking r-base-dev (4.3.2-1build1) ... 185s Selecting previously unselected package pkg-r-autopkgtest. 185s Preparing to unpack .../104-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 185s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 185s Selecting previously unselected package r-bioc-biocgenerics. 185s Preparing to unpack .../105-r-bioc-biocgenerics_0.48.1-2_all.deb ... 185s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 185s Selecting previously unselected package r-bioc-biobase. 185s Preparing to unpack .../106-r-bioc-biobase_2.62.0-1_arm64.deb ... 185s Unpacking r-bioc-biobase (2.62.0-1) ... 185s Selecting previously unselected package r-bioc-s4vectors. 185s Preparing to unpack .../107-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 185s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 185s Selecting previously unselected package r-bioc-iranges. 185s Preparing to unpack .../108-r-bioc-iranges_2.36.0-1_arm64.deb ... 185s Unpacking r-bioc-iranges (2.36.0-1) ... 185s Selecting previously unselected package r-cran-dbi. 185s Preparing to unpack .../109-r-cran-dbi_1.2.2-1_all.deb ... 185s Unpacking r-cran-dbi (1.2.2-1) ... 185s Selecting previously unselected package r-cran-bit. 185s Preparing to unpack .../110-r-cran-bit_4.0.5-1_arm64.deb ... 185s Unpacking r-cran-bit (4.0.5-1) ... 185s Selecting previously unselected package r-cran-bit64. 185s Preparing to unpack .../111-r-cran-bit64_4.0.5-1_arm64.deb ... 185s Unpacking r-cran-bit64 (4.0.5-1) ... 185s Selecting previously unselected package r-cran-rlang. 185s Preparing to unpack .../112-r-cran-rlang_1.1.3-1_arm64.deb ... 185s Unpacking r-cran-rlang (1.1.3-1) ... 185s Selecting previously unselected package r-cran-cli. 185s Preparing to unpack .../113-r-cran-cli_3.6.2-1_arm64.deb ... 185s Unpacking r-cran-cli (3.6.2-1) ... 186s Selecting previously unselected package r-cran-glue. 186s Preparing to unpack .../114-r-cran-glue_1.7.0-1_arm64.deb ... 186s Unpacking r-cran-glue (1.7.0-1) ... 186s Selecting previously unselected package r-cran-lifecycle. 186s Preparing to unpack .../115-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 186s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 186s Selecting previously unselected package r-cran-vctrs. 186s Preparing to unpack .../116-r-cran-vctrs_0.6.5-1_arm64.deb ... 186s Unpacking r-cran-vctrs (0.6.5-1) ... 186s Selecting previously unselected package r-cran-blob. 186s Preparing to unpack .../117-r-cran-blob_1.2.4-1_all.deb ... 186s Unpacking r-cran-blob (1.2.4-1) ... 186s Selecting previously unselected package r-cran-fastmap. 186s Preparing to unpack .../118-r-cran-fastmap_1.1.1-1_arm64.deb ... 186s Unpacking r-cran-fastmap (1.1.1-1) ... 186s Selecting previously unselected package r-cran-cachem. 186s Preparing to unpack .../119-r-cran-cachem_1.0.8-1_arm64.deb ... 186s Unpacking r-cran-cachem (1.0.8-1) ... 186s Selecting previously unselected package r-cran-memoise. 186s Preparing to unpack .../120-r-cran-memoise_2.0.1-1_all.deb ... 186s Unpacking r-cran-memoise (2.0.1-1) ... 186s Selecting previously unselected package r-cran-pkgconfig. 186s Preparing to unpack .../121-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 186s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 186s Selecting previously unselected package r-cran-plogr. 187s Preparing to unpack .../122-r-cran-plogr_0.2.0-3build1_all.deb ... 187s Unpacking r-cran-plogr (0.2.0-3build1) ... 187s Selecting previously unselected package r-cran-cpp11. 187s Preparing to unpack .../123-r-cran-cpp11_0.4.7-1_all.deb ... 187s Unpacking r-cran-cpp11 (0.4.7-1) ... 187s Selecting previously unselected package r-cran-rsqlite. 187s Preparing to unpack .../124-r-cran-rsqlite_2.3.4-1_arm64.deb ... 187s Unpacking r-cran-rsqlite (2.3.4-1) ... 187s Selecting previously unselected package r-cran-curl. 187s Preparing to unpack .../125-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 187s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 187s Selecting previously unselected package r-cran-jsonlite. 188s Preparing to unpack .../126-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 188s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 188s Selecting previously unselected package r-cran-mime. 188s Preparing to unpack .../127-r-cran-mime_0.12-1_arm64.deb ... 188s Unpacking r-cran-mime (0.12-1) ... 188s Selecting previously unselected package r-cran-sys. 188s Preparing to unpack .../128-r-cran-sys_3.4.2-1_arm64.deb ... 188s Unpacking r-cran-sys (3.4.2-1) ... 188s Selecting previously unselected package r-cran-askpass. 188s Preparing to unpack .../129-r-cran-askpass_1.2.0-1_arm64.deb ... 188s Unpacking r-cran-askpass (1.2.0-1) ... 188s Selecting previously unselected package r-cran-openssl. 188s Preparing to unpack .../130-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 188s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 188s Selecting previously unselected package r-cran-r6. 188s Preparing to unpack .../131-r-cran-r6_2.5.1-1_all.deb ... 188s Unpacking r-cran-r6 (2.5.1-1) ... 188s Selecting previously unselected package r-cran-httr. 188s Preparing to unpack .../132-r-cran-httr_1.4.7+dfsg-1_all.deb ... 188s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 188s Selecting previously unselected package r-cran-png. 188s Preparing to unpack .../133-r-cran-png_0.1-8-1_arm64.deb ... 188s Unpacking r-cran-png (0.1-8-1) ... 188s Selecting previously unselected package r-bioc-zlibbioc. 188s Preparing to unpack .../134-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 188s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 188s Selecting previously unselected package r-bioc-xvector. 188s Preparing to unpack .../135-r-bioc-xvector_0.42.0-1_arm64.deb ... 188s Unpacking r-bioc-xvector (0.42.0-1) ... 188s Selecting previously unselected package r-cran-bitops. 188s Preparing to unpack .../136-r-cran-bitops_1.0-7-1_arm64.deb ... 188s Unpacking r-cran-bitops (1.0-7-1) ... 188s Selecting previously unselected package r-cran-rcurl. 188s Preparing to unpack .../137-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 188s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 189s Selecting previously unselected package r-bioc-genomeinfodbdata. 189s Preparing to unpack .../138-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 189s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 189s Selecting previously unselected package r-bioc-genomeinfodb. 189s Preparing to unpack .../139-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 189s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 189s Selecting previously unselected package r-cran-crayon. 189s Preparing to unpack .../140-r-cran-crayon_1.5.2-1_all.deb ... 189s Unpacking r-cran-crayon (1.5.2-1) ... 189s Selecting previously unselected package r-bioc-biostrings. 189s Preparing to unpack .../141-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 189s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 190s Selecting previously unselected package r-bioc-keggrest. 190s Preparing to unpack .../142-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 190s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-annotationdbi. 190s Preparing to unpack .../143-r-bioc-annotationdbi_1.64.1-1_all.deb ... 190s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 190s Selecting previously unselected package r-cran-xml. 190s Preparing to unpack .../144-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 190s Unpacking r-cran-xml (3.99-0.16.1-1) ... 190s Selecting previously unselected package r-cran-xtable. 190s Preparing to unpack .../145-r-cran-xtable_1%3a1.8-4-2_all.deb ... 190s Unpacking r-cran-xtable (1:1.8-4-2) ... 190s Selecting previously unselected package r-bioc-annotate. 190s Preparing to unpack .../146-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 190s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 190s Selecting previously unselected package r-cran-lattice. 190s Preparing to unpack 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191s Selecting previously unselected package r-bioc-genefilter. 191s Preparing to unpack .../153-r-bioc-genefilter_1.84.0-1_arm64.deb ... 191s Unpacking r-bioc-genefilter (1.84.0-1) ... 191s Selecting previously unselected package r-cran-rcolorbrewer. 191s Preparing to unpack .../154-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 191s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 191s Selecting previously unselected package r-bioc-geneplotter. 191s Preparing to unpack .../155-r-bioc-geneplotter_1.80.0+dfsg-1_all.deb ... 191s Unpacking r-bioc-geneplotter (1.80.0+dfsg-1) ... 191s Selecting previously unselected package r-cran-mass. 191s Preparing to unpack .../156-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 191s Unpacking r-cran-mass (7.3-60.0.1-1) ... 191s Selecting previously unselected package r-bioc-deseq. 191s Preparing to unpack .../157-r-bioc-deseq_1.39.0-13_arm64.deb ... 191s Unpacking r-bioc-deseq (1.39.0-13) ... 191s Selecting previously unselected package r-cran-catools. 191s 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libgraphite2-3:arm64 (1.3.14-2) ... 192s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 192s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 192s Setting up libpaper1:arm64 (1.1.29) ... 193s 193s Creating config file /etc/papersize with new version 193s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 193s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 193s Setting up libdatrie1:arm64 (0.2.13-3) ... 193s Setting up libxcb-render0:arm64 (1.15-1) ... 193s Setting up unzip (6.0-28ubuntu3) ... 193s Setting up x11-common (1:7.7+23ubuntu2) ... 194s Setting up libdeflate0:arm64 (1.19-1) ... 194s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 194s Setting up libxcb-shm0:arm64 (1.15-1) ... 194s Setting up libpaper-utils (1.1.29) ... 194s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 194s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 194s Setting up zip (3.0-13) ... 194s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 194s Setting up libblas3:arm64 (3.12.0-3) ... 194s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 194s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 194s Setting up libpkgconf3:arm64 (1.8.1-2) ... 194s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 194s Setting up fonts-dejavu-mono (2.37-8) ... 194s Setting up libmpc3:arm64 (1.3.1-1) ... 194s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 194s Setting up icu-devtools (74.2-1ubuntu1) ... 194s Setting up fonts-dejavu-core (2.37-8) ... 194s Setting up pkgconf-bin (1.8.1-2) ... 194s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 194s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libwebp7:arm64 (1.3.2-0.4) ... 194s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 194s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 194s Setting up libnsl-dev:arm64 (1.3.0-3) ... 194s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 194s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 194s Setting up libthai-data (0.1.29-2) ... 194s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 194s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libisl23:arm64 (0.26-3) ... 194s Setting up libc-dev-bin (2.39-0ubuntu2) ... 194s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 194s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 194s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 194s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libblas-dev:arm64 (3.12.0-3) ... 194s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 194s Setting up dctrl-tools (2.24-3build2) ... 194s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 194s Setting up libice6:arm64 (2:1.0.10-1build2) ... 194s Setting up liblapack3:arm64 (3.12.0-3) ... 194s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 194s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 194s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 194s Setting up pkgconf:arm64 (1.8.1-2) ... 194s Setting up libthai0:arm64 (0.1.29-2) ... 194s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 194s Setting up liblapack-dev:arm64 (3.12.0-3) ... 194s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 194s Setting up pkg-config:arm64 (1.8.1-2) ... 194s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 194s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 194s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 194s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 194s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 194s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 194s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 194s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 194s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 194s Setting up fontconfig (2.15.0-1ubuntu1) ... 196s Regenerating fonts cache... done. 196s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 196s Setting up libxft2:arm64 (2.3.6-1) ... 196s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 196s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 196s Setting up cpp-13 (13.2.0-17ubuntu2) ... 196s Setting up libtk8.6:arm64 (8.6.13-2) ... 196s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 196s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 196s Setting up libreadline-dev:arm64 (8.2-3) ... 196s Setting up libcairo2:arm64 (1.18.0-1) ... 196s Setting up gcc-13 (13.2.0-17ubuntu2) ... 196s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 196s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 196s Setting up cpp (4:13.2.0-7ubuntu1) ... 196s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 196s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 196s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 196s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 196s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 196s Setting up g++-13 (13.2.0-17ubuntu2) ... 196s Setting up libpng-dev:arm64 (1.6.43-1) ... 196s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 196s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 196s Setting up gcc (4:13.2.0-7ubuntu1) ... 196s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 196s Setting up r-base-core (4.3.2-1build1) ... 197s 197s Creating config file /etc/R/Renviron with new version 197s Setting up r-cran-crayon (1.5.2-1) ... 197s Setting up r-cran-lattice (0.22-5-1) ... 197s Setting up r-cran-xml (3.99-0.16.1-1) ... 197s Setting up r-cran-locfit (1.5-9.8-1) ... 197s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 197s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 197s Setting up r-cran-r6 (2.5.1-1) ... 197s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 197s Setting up r-cran-curl (5.2.0+dfsg-1) ... 197s Setting up r-bioc-biocgenerics (0.48.1-2) ... 197s Setting up r-cran-rlang (1.1.3-1) ... 197s Setting up r-cran-matrixstats (1.2.0-1) ... 197s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 197s Setting up r-cran-sys (3.4.2-1) ... 197s Setting up r-cran-plogr (0.2.0-3build1) ... 197s Setting up r-cran-mime (0.12-1) ... 197s Setting up r-cran-dbi (1.2.2-1) ... 197s Setting up r-cran-mass (7.3-60.0.1-1) ... 197s Setting up r-cran-gtools (3.9.5-1) ... 197s Setting up r-cran-glue (1.7.0-1) ... 197s Setting up r-cran-bit (4.0.5-1) ... 197s Setting up r-cran-xtable (1:1.8-4-2) ... 197s Setting up r-cran-cli (3.6.2-1) ... 197s Setting up gfortran (4:13.2.0-7ubuntu1) ... 197s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 197s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 197s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 197s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 197s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 197s Setting up r-cran-bitops (1.0-7-1) ... 197s Setting up r-cran-bit64 (4.0.5-1) ... 197s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 197s Setting up r-cran-askpass (1.2.0-1) ... 197s Setting up r-cran-fastmap (1.1.1-1) ... 197s Setting up r-cran-png (0.1-8-1) ... 197s Setting up r-bioc-biobase (2.62.0-1) ... 197s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 197s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 197s Setting up r-cran-cpp11 (0.4.7-1) ... 197s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 197s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 197s Setting up r-cran-matrix (1.6-5-1) ... 197s Setting up r-cran-kernsmooth (2.23-22-1) ... 197s Setting up g++ (4:13.2.0-7ubuntu1) ... 197s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 197s Setting up r-cran-cachem (1.0.8-1) ... 197s Setting up build-essential (12.10ubuntu1) ... 197s Setting up r-cran-catools (1.18.2-1) ... 197s Setting up r-bioc-iranges (2.36.0-1) ... 197s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 197s Setting up r-cran-gdata (3.0.0-1) ... 197s Setting up r-cran-vctrs (0.6.5-1) ... 197s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 197s Setting up r-base-dev (4.3.2-1build1) ... 197s Setting up r-cran-survival (3.5-8-1) ... 197s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 197s Setting up r-cran-httr (1.4.7+dfsg-1) ... 197s Setting up r-cran-memoise (2.0.1-1) ... 197s Setting up r-cran-blob (1.2.4-1) ... 197s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 197s Setting up r-bioc-xvector (0.42.0-1) ... 197s Setting up r-cran-gplots (3.1.3.1-1) ... 197s Setting up r-cran-rsqlite (2.3.4-1) ... 197s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 197s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 197s Setting up r-bioc-annotationdbi (1.64.1-1) ... 197s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 197s Setting up r-bioc-genefilter (1.84.0-1) ... 197s Setting up r-bioc-geneplotter (1.80.0+dfsg-1) ... 197s Setting up r-bioc-deseq (1.39.0-13) ... 197s Setting up autopkgtest-satdep (0) ... 197s Processing triggers for man-db (2.12.0-3) ... 199s Processing triggers for install-info (7.1-3) ... 199s Processing triggers for libc-bin (2.39-0ubuntu2) ... 209s (Reading database ... 84339 files and directories currently installed.) 209s Removing autopkgtest-satdep (0) ... 214s autopkgtest [17:31:05]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 214s autopkgtest [17:31:05]: test pkg-r-autopkgtest: [----------------------- 218s Test: Try to load the R library DESeq 220s 220s R version 4.3.2 (2023-10-31) -- "Eye Holes" 220s Copyright (C) 2023 The R Foundation for Statistical Computing 220s Platform: aarch64-unknown-linux-gnu (64-bit) 220s 220s R is free software and comes with ABSOLUTELY NO WARRANTY. 220s You are welcome to redistribute it under certain conditions. 220s Type 'license()' or 'licence()' for distribution details. 220s 220s R is a collaborative project with many contributors. 220s Type 'contributors()' for more information and 220s 'citation()' on how to cite R or R packages in publications. 220s 220s Type 'demo()' for some demos, 'help()' for on-line help, or 220s 'help.start()' for an HTML browser interface to help. 220s Type 'q()' to quit R. 220s 220s > library('DESeq') 220s Loading required package: BiocGenerics 221s 221s Attaching package: ‘BiocGenerics’ 221s 221s The following objects are masked from ‘package:stats’: 221s 221s IQR, mad, sd, var, xtabs 221s 221s The following objects are masked from ‘package:base’: 221s 221s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 221s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 221s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 221s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 221s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 221s table, tapply, union, unique, unsplit, which.max, which.min 221s 221s Loading required package: Biobase 221s Welcome to Bioconductor 221s 221s Vignettes contain introductory material; view with 221s 'browseVignettes()'. To cite Bioconductor, see 221s 'citation("Biobase")', and for packages 'citation("pkgname")'. 221s 221s Loading required package: locfit 221s locfit 1.5-9.8 2023-06-11 221s Loading required package: lattice 226s Welcome to 'DESeq'. For improved performance, usability and 226s functionality, please consider migrating to 'DESeq2'. 226s > 226s > 226s Other tests are currently unsupported! 226s They will be progressively added. 226s autopkgtest [17:31:17]: test pkg-r-autopkgtest: -----------------------] 227s autopkgtest [17:31:18]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 227s pkg-r-autopkgtest PASS 227s autopkgtest [17:31:18]: @@@@@@@@@@@@@@@@@@@@ summary 227s pkg-r-autopkgtest PASS 245s Creating nova instance adt-noble-arm64-r-bioc-deseq-20240316-172731-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...