0s autopkgtest [17:27:03]: starting date and time: 2024-03-16 17:27:03+0000 0s autopkgtest [17:27:03]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:27:03]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.z99yt_3d/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-demixt --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-4.secgroup --name adt-noble-arm64-r-bioc-demixt-20240316-172702-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 99s autopkgtest [17:28:42]: testbed dpkg architecture: arm64 99s autopkgtest [17:28:42]: testbed apt version: 2.7.12 99s autopkgtest [17:28:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 100s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 100s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 100s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 100s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 100s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 100s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 100s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 100s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 100s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 100s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 101s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 101s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 101s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 102s Fetched 9060 kB in 2s (5647 kB/s) 102s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s Calculating upgrade... 106s The following packages will be REMOVED: 106s libglib2.0-0 libssl3 106s The following NEW packages will be installed: 106s libglib2.0-0t64 libssl3t64 xdg-user-dirs 106s The following packages have been kept back: 106s curl 106s The following packages will be upgraded: 106s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 106s ubuntu-minimal ubuntu-standard 106s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 106s Need to get 4613 kB of archives. 106s After this operation, 211 kB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 107s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 107s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 107s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 107s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 107s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 107s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 107s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 107s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 107s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 107s Fetched 4613 kB in 1s (6856 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 108s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 108s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 108s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 108s udisks2 depends on libglib2.0-0 (>= 2.77.0). 108s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 108s python3-gi depends on libglib2.0-0 (>= 2.77.0). 108s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 108s netplan.io depends on libglib2.0-0 (>= 2.70.0). 108s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 108s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 108s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 108s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 108s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 108s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 108s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 108s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 108s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 108s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 108s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 108s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 108s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 108s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 108s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 108s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 108s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 108s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 108s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 108s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 108s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s fwupd depends on libglib2.0-0 (>= 2.79.0). 108s bolt depends on libglib2.0-0 (>= 2.56.0). 108s 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 108s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 108s Selecting previously unselected package libglib2.0-0t64:arm64. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 108s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 108s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 108s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 108s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 108s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 108s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 108s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 108s wget depends on libssl3 (>= 3.0.0). 108s u-boot-tools depends on libssl3 (>= 3.0.0). 108s tnftp depends on libssl3 (>= 3.0.0). 108s tcpdump depends on libssl3 (>= 3.0.0). 108s systemd-resolved depends on libssl3 (>= 3.0.0). 108s systemd depends on libssl3 (>= 3.0.0). 108s sudo depends on libssl3 (>= 3.0.0). 108s sbsigntool depends on libssl3 (>= 3.0.0). 108s rsync depends on libssl3 (>= 3.0.0). 108s python3-cryptography depends on libssl3 (>= 3.0.0). 108s openssh-server depends on libssl3 (>= 3.0.10). 108s openssh-client depends on libssl3 (>= 3.0.10). 108s mtd-utils depends on libssl3 (>= 3.0.0). 108s mokutil depends on libssl3 (>= 3.0.0). 108s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 108s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 108s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 108s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 108s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 108s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 108s libnvme1 depends on libssl3 (>= 3.0.0). 108s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 108s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 108s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 108s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 108s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 108s kmod depends on libssl3 (>= 3.0.0). 108s dhcpcd-base depends on libssl3 (>= 3.0.0). 108s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 108s 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 108s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 108s Selecting previously unselected package libssl3t64:arm64. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 108s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 108s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 108s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 108s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 108s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 108s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 108s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 108s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 108s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 108s Unpacking ubuntu-minimal (1.536) over (1.535) ... 108s Selecting previously unselected package xdg-user-dirs. 108s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 108s Unpacking xdg-user-dirs (0.18-1) ... 108s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 108s Unpacking ubuntu-standard (1.536) over (1.535) ... 109s Setting up ubuntu-minimal (1.536) ... 109s Setting up xdg-user-dirs (0.18-1) ... 109s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 109s Setting up libtirpc-common (1.3.4+ds-1.1) ... 109s Setting up ubuntu-standard (1.536) ... 109s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 109s No schema files found: doing nothing. 109s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 109s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 109s Setting up openssl (3.0.13-0ubuntu1) ... 109s Setting up readline-common (8.2-3.1) ... 109s Processing triggers for man-db (2.12.0-3) ... 109s Processing triggers for install-info (7.1-3) ... 109s Processing triggers for libc-bin (2.39-0ubuntu2) ... 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 111s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 112s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 112s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 112s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 112s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 114s Reading package lists... 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s Calculating upgrade... 115s The following packages have been kept back: 115s curl 115s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 119s autopkgtest [17:29:02]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 119s autopkgtest [17:29:02]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-demixt 121s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-demixt 1.18.0+dfsg-1 (dsc) [2342 B] 121s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-demixt 1.18.0+dfsg-1 (tar) [3475 kB] 121s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-demixt 1.18.0+dfsg-1 (diff) [3228 B] 122s gpgv: Signature made Mon Jan 15 07:15:07 2024 UTC 122s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 122s gpgv: issuer "tille@debian.org" 122s gpgv: Can't check signature: No public key 122s dpkg-source: warning: cannot verify inline signature for ./r-bioc-demixt_1.18.0+dfsg-1.dsc: no acceptable signature found 122s autopkgtest [17:29:05]: testing package r-bioc-demixt version 1.18.0+dfsg-1 122s autopkgtest [17:29:05]: build not needed 124s autopkgtest [17:29:07]: test pkg-r-autopkgtest: preparing testbed 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s Starting pkgProblemResolver with broken count: 0 127s Starting 2 pkgProblemResolver with broken count: 0 127s Done 128s The following additional packages will be installed: 128s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 128s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 128s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 128s fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 128s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 128s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 128s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 128s libblas-dev libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev 128s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev 128s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 128s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 128s libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 128s libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 128s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 128s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 128s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 128s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 128s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 128s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 128s liblapack-dev liblapack3 liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 128s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 128s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 128s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 128s libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0 128s libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev libsz2 libtcl8.6 128s libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 128s libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 128s libxt6t64 linux-libc-dev littler node-bootstrap-sass node-html5shiv 128s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 128s pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 128s r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 128s r-bioc-biocparallel r-bioc-biostrings r-bioc-bsgenome r-bioc-bsseq 128s r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-demixt r-bioc-dss 128s r-bioc-edger r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 128s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-hdf5array 128s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 128s r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib 128s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 128s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 128s r-bioc-sva r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass 128s r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 128s r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-colorspace 128s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 128s r-cran-dbi r-cran-dendextend r-cran-digest r-cran-ellipsis r-cran-evaluate 128s r-cran-evd r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome 128s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 128s r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-gtools 128s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband 128s r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr 128s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 128s r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix 128s r-cran-matrixcalc r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 128s r-cran-mnormt r-cran-munsell r-cran-nlme r-cran-openssl r-cran-permute 128s r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png 128s r-cran-promises r-cran-psych r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 128s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 128s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 128s r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools 128s r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 128s r-cran-tibble r-cran-tinytex r-cran-truncdist r-cran-utf8 r-cran-vctrs 128s r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 128s r-cran-xtable r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip 128s zlib1g-dev 128s Suggested packages: 128s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 128s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 128s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 128s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 128s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 128s libboost-context1.83-dev libboost-contract1.83-dev 128s libboost-coroutine1.83-dev libboost-date-time1.83-dev 128s libboost-exception1.83-dev libboost-fiber1.83-dev 128s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 128s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 128s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 128s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 128s libboost-numpy1.83-dev libboost-program-options1.83-dev 128s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 128s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 128s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 128s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 128s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 128s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 128s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 128s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 128s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 128s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 128s librsvg2-bin groff ghc php python ruby libjs-katex 128s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 128s r-base-html texlive-base texlive-latex-base texlive-plain-generic 128s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 128s r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle 128s r-cran-testthat r-cran-rcmdcheck r-bioc-all r-bioc-affy r-bioc-deseq2 128s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation 128s r-bioc-shortread r-cran-batchtools r-bioc-genomicfeatures r-cran-biocmanager 128s r-cran-lobstr r-cran-profmem r-cran-readr r-cran-seuratobject r-cran-class 128s r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-experimenthub 128s r-bioc-singlecellexperiment r-cran-markdown r-cran-biasedurn r-cran-ellipse 128s r-cran-gplots r-cran-bench r-cran-dplyr r-cran-mockery r-cran-tinytest 128s r-bioc-bladderbatch r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-kernlab 128s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-rstudioapi 128s r-cran-rmysql r-cran-seriation r-cran-ape r-cran-heatmaply 128s r-cran-dynamictreecut r-cran-corrplot r-cran-cluster r-cran-fpc 128s r-cran-circlize r-cran-interp r-cran-magick r-cran-sf r-cran-getopt 128s r-cran-gam r-cran-vegan r-cran-bookdown r-cran-sessioninfo 128s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units 128s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-spelling 128s r-cran-brio r-cran-callr r-cran-here r-cran-hms r-cran-pkgbuild 128s r-cran-pkgload r-cran-purrr r-cran-tidyr r-cran-plm r-cran-zoo 128s Recommended packages: 128s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 128s r-recommended r-doc-html r-cran-testthat r-cran-thematic r-cran-callr 128s r-cran-covr r-cran-htmlwidgets r-cran-mockery r-cran-processx r-cran-ps 128s r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-xml2 r-cran-bench 128s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-progress 128s r-cran-spelling r-cran-webutils r-cran-xts r-cran-nanotime r-cran-zoo 128s r-cran-pvclust r-cran-unitizer r-cran-dplyr r-cran-rsvg r-cran-testit 128s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 128s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 128s r-cran-svglite r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown 128s r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick 128s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot 128s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 128s r-cran-sodium r-cran-lubridate r-cran-future r-cran-purrr r-cran-psychtools 128s r-cran-gparotation r-cran-lavaan r-cran-lme4 r-cran-rcsdp r-bioc-graph 128s r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit 128s r-cran-dbitest r-cran-gert r-cran-gh r-cran-hms r-cran-rvest 128s r-cran-dichromat r-cran-mockr r-cran-formattable r-cran-generics 128s r-cran-pkgdown r-cran-zeallot r-cran-remotes r-cran-renv 128s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 128s x11-xserver-utils 128s The following packages will be REMOVED: 128s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 128s The following NEW packages will be installed: 128s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 128s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 128s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 128s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 128s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 128s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 128s gfortran-aarch64-linux-gnu hdf5-helpers icu-devtools javascript-common 128s libaec-dev libaec0 libasan8 libatomic1 libblas-dev libblas3 libblosc1 128s libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 128s libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 128s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 128s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 128s libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 128s libhdf5-hl-fortran-100 libhwasan0 libice6 libicu-dev libisl23 libitm1 128s libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 128s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 128s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 128s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 128s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 128s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 128s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 128s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 128s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 128s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64 128s libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev 128s libstdc++-13-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 128s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 128s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 128s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 128s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 128s r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-beachmat 128s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 128s r-bioc-biostrings r-bioc-bsgenome r-bioc-bsseq r-bioc-delayedarray 128s r-bioc-delayedmatrixstats r-bioc-demixt r-bioc-dss r-bioc-edger 128s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 128s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-hdf5array 128s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 128s r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib 128s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 128s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 128s r-bioc-sva r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass 128s r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 128s r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-colorspace 128s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 128s r-cran-dbi r-cran-dendextend r-cran-digest r-cran-ellipsis r-cran-evaluate 128s r-cran-evd r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome 128s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 128s r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-gtools 128s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband 128s r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr 128s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 128s r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix 128s r-cran-matrixcalc r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 128s r-cran-mnormt r-cran-munsell r-cran-nlme r-cran-openssl r-cran-permute 128s r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png 128s r-cran-promises r-cran-psych r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 128s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 128s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 128s r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools 128s r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 128s r-cran-tibble r-cran-tinytex r-cran-truncdist r-cran-utf8 r-cran-vctrs 128s r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 128s r-cran-xtable r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip 128s zlib1g-dev 128s The following packages will be upgraded: 128s curl 128s 1 upgraded, 303 newly installed, 5 to remove and 0 not upgraded. 128s Need to get 368 MB/368 MB of archives. 128s After this operation, 1193 MB of additional disk space will be used. 128s Get:1 /tmp/autopkgtest.bxvFIx/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 128s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 128s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 128s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 128s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 128s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 128s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 128s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 128s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 128s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 128s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 128s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 128s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 128s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 129s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 129s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 129s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 129s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 129s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 129s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 129s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 129s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 129s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 129s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 129s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 129s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 129s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 129s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 129s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 129s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 129s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 130s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 130s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 130s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 130s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 130s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 130s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 130s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 130s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 130s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 130s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 130s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 130s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 130s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 130s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 130s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 130s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 130s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 130s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 130s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 130s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 130s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 130s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 130s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 130s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 130s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 hdf5-helpers arm64 1.10.10+repack-3ubuntu1 [15.5 kB] 130s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 130s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 130s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 130s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 130s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 131s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 131s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 131s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 131s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 131s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 131s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 131s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 131s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 131s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 131s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 131s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu7 [454 kB] 131s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 131s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 131s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 131s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 131s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 131s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 131s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-cpp-103-1 arm64 1.10.10+repack-3ubuntu1 [120 kB] 131s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-fortran-102 arm64 1.10.10+repack-3ubuntu1 [86.3 kB] 131s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 131s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.10+repack-3ubuntu1 [30.7 kB] 131s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-cpp-100 arm64 1.10.10+repack-3ubuntu1 [10.7 kB] 131s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 131s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 131s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 131s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 131s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 131s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 131s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 131s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl-dev arm64 3.0.13-0ubuntu1 [2335 kB] 131s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-dev arm64 1.10.10+repack-3ubuntu1 [3036 kB] 131s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 131s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 131s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 131s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 131s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 131s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 131s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 131s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 131s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 132s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 132s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 132s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 132s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 132s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 132s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 132s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 132s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 132s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 132s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 132s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 132s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 132s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 132s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 132s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 132s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 132s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 132s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 132s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 132s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 132s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 132s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 132s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 132s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 132s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 132s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 132s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 132s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 132s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 132s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 132s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 132s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 132s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 132s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 132s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 132s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 132s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 132s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 133s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 133s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 133s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 133s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 133s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 133s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 133s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 133s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 133s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 133s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 134s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 134s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 134s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 134s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 134s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 134s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 134s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 134s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 134s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 134s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 134s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 134s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 134s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 134s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 134s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 134s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 134s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 134s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 134s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 134s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 134s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 134s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 134s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 134s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 134s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 135s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 135s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 135s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 135s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 135s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 135s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 135s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 135s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 135s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 135s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 135s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 135s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 135s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 135s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 135s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 135s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 135s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 135s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 135s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 135s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 135s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 135s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 135s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 135s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 135s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 136s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 136s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 136s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 136s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 136s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 136s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 136s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 136s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 136s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-beachmat arm64 2.18.1+ds-1 [1561 kB] 136s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 136s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 136s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 136s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 136s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 136s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 136s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 136s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 136s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 136s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 136s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 137s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 137s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 137s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 137s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 137s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 137s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 137s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 137s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 137s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 137s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 137s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 137s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 137s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 137s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 137s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 137s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 137s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtools arm64 3.9.5-1 [340 kB] 137s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 137s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 137s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 137s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 138s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsematrixstats arm64 1.14.0+dfsg-1 [815 kB] 138s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 138s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-permute all 0.9-7-1 [228 kB] 138s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 138s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 138s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5lib arm64 1.24.2+dfsg-1 [96.1 kB] 138s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5filters arm64 1.14.1+dfsg-3 [135 kB] 138s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5 arm64 2.46.1+dfsg-1 [805 kB] 138s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-hdf5array arm64 1.30.1-1 [8757 kB] 138s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsseq arm64 1.38.0+dfsg-1 [2945 kB] 138s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 138s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 138s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 138s Get:254 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 138s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 138s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 138s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 138s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixcalc all 1.0.6-1 [200 kB] 138s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 138s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 138s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 138s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 138s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 138s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 138s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 138s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 138s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 139s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 139s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 139s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 139s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 139s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 139s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 139s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 139s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 139s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 139s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 139s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 139s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 139s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 139s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 139s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 139s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dss arm64 2.50.1+dfsg-1 [651 kB] 139s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 139s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 139s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 139s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 139s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 139s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 139s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 139s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 139s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 139s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 139s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 140s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dendextend all 1.17.1+dfsg-1 [959 kB] 140s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mnormt arm64 2.1.1-2 [170 kB] 140s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-psych all 2.4.1-1 [3387 kB] 140s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 140s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 140s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 140s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sva arm64 3.50.0-1 [465 kB] 140s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evd arm64 2.3-6.1-1 [1732 kB] 140s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-truncdist all 1.0-2-4build1 [34.6 kB] 140s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-demixt arm64 1.18.0+dfsg-1 [2657 kB] 142s Preconfiguring packages ... 142s Fetched 368 MB in 12s (29.6 MB/s) 142s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 142s wget depends on libpsl5 (>= 0.16.0). 142s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 142s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 142s 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 142s Removing libpsl5:arm64 (0.21.2-1build1) ... 142s Selecting previously unselected package libpsl5t64:arm64. 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 142s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 142s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 142s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 142s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 142s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 142s Selecting previously unselected package libcurl4t64:arm64. 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 142s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 142s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 142s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 142s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 142s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 142s 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 142s Removing libpng16-16:arm64 (1.6.43-1) ... 143s Selecting previously unselected package libpng16-16t64:arm64. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 143s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 143s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 143s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 143s parted depends on libreadline8 (>= 6.0). 143s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 143s gpgsm depends on libreadline8 (>= 6.0). 143s gpgconf depends on libreadline8 (>= 6.0). 143s gpg depends on libreadline8 (>= 6.0). 143s gawk depends on libreadline8 (>= 6.0). 143s fdisk depends on libreadline8 (>= 6.0). 143s 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 143s Removing libreadline8:arm64 (8.2-3) ... 143s Selecting previously unselected package libreadline8t64:arm64. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 143s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 143s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 143s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 143s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 143s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 143s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 143s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 143s lsof depends on libtirpc3 (>= 1.0.2). 143s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 143s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 143s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 143s iproute2 depends on libtirpc3 (>= 1.0.2). 143s 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 143s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 143s Selecting previously unselected package libtirpc3t64:arm64. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 143s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 143s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 143s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 143s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 143s Selecting previously unselected package libc-dev-bin. 143s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 143s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 143s Selecting previously unselected package linux-libc-dev:arm64. 143s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 143s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 143s Selecting previously unselected package libcrypt-dev:arm64. 143s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 143s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 143s Selecting previously unselected package libtirpc-dev:arm64. 143s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 143s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 143s Selecting previously unselected package libnsl-dev:arm64. 143s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 143s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 143s Selecting previously unselected package rpcsvc-proto. 143s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 143s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 143s Selecting previously unselected package libc6-dev:arm64. 143s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 143s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 143s Selecting previously unselected package libisl23:arm64. 144s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 144s Unpacking libisl23:arm64 (0.26-3) ... 144s Selecting previously unselected package libmpc3:arm64. 144s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 144s Unpacking libmpc3:arm64 (1.3.1-1) ... 144s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 144s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 144s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 144s Selecting previously unselected package cpp-13. 144s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 144s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 144s Selecting previously unselected package cpp-aarch64-linux-gnu. 144s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 144s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 144s Selecting previously unselected package cpp. 144s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 144s Unpacking cpp (4:13.2.0-7ubuntu1) ... 144s Selecting previously unselected package libcc1-0:arm64. 144s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 144s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 144s Selecting previously unselected package libgomp1:arm64. 144s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 144s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 144s Selecting previously unselected package libitm1:arm64. 144s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 144s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 144s Selecting previously unselected package libatomic1:arm64. 144s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 144s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 144s Selecting previously unselected package libasan8:arm64. 144s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 144s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 144s Selecting previously unselected package liblsan0:arm64. 145s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 145s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 145s Selecting previously unselected package libtsan2:arm64. 145s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 145s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 145s Selecting previously unselected package libubsan1:arm64. 145s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 145s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 145s Selecting previously unselected package libhwasan0:arm64. 145s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 145s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 145s Selecting previously unselected package libgcc-13-dev:arm64. 145s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 145s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 145s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 145s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 145s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 146s Selecting previously unselected package gcc-13. 146s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 146s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 146s Selecting previously unselected package gcc-aarch64-linux-gnu. 146s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 146s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 146s Selecting previously unselected package gcc. 147s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 147s Unpacking gcc (4:13.2.0-7ubuntu1) ... 147s Selecting previously unselected package libstdc++-13-dev:arm64. 147s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 147s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 147s Selecting previously unselected package g++-13-aarch64-linux-gnu. 147s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 147s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 148s Selecting previously unselected package g++-13. 148s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 148s Unpacking g++-13 (13.2.0-17ubuntu2) ... 148s Selecting previously unselected package g++-aarch64-linux-gnu. 148s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 148s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 148s Selecting previously unselected package g++. 148s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 148s Unpacking g++ (4:13.2.0-7ubuntu1) ... 148s Selecting previously unselected package build-essential. 148s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 148s Unpacking build-essential (12.10ubuntu1) ... 148s Selecting previously unselected package dctrl-tools. 148s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 148s Unpacking dctrl-tools (2.24-3build2) ... 148s Selecting previously unselected package fonts-dejavu-mono. 148s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 148s Unpacking fonts-dejavu-mono (2.37-8) ... 148s Selecting previously unselected package fonts-dejavu-core. 148s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 148s Unpacking fonts-dejavu-core (2.37-8) ... 148s Selecting previously unselected package fontconfig-config. 148s Preparing to unpack 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fonts-mathjax. 149s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 149s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 150s Selecting previously unselected package libgfortran5:arm64. 150s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 150s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 150s Selecting previously unselected package libgfortran-13-dev:arm64. 150s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 150s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 150s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 150s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 150s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 150s Selecting previously unselected package gfortran-13. 150s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 150s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 150s Selecting previously unselected package gfortran-aarch64-linux-gnu. 150s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 150s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 150s Selecting previously unselected package gfortran. 150s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 150s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 150s Selecting previously unselected package hdf5-helpers. 150s Preparing to unpack .../049-hdf5-helpers_1.10.10+repack-3ubuntu1_arm64.deb ... 150s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 150s Selecting previously unselected package icu-devtools. 150s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 150s Unpacking icu-devtools (74.2-1ubuntu1) ... 150s Selecting previously unselected package javascript-common. 150s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 150s Unpacking javascript-common (11+nmu1) ... 150s Selecting previously unselected package libaec0:arm64. 150s Preparing to unpack .../052-libaec0_1.1.2-1_arm64.deb ... 150s Unpacking libaec0:arm64 (1.1.2-1) ... 150s Selecting previously unselected package libblas3:arm64. 150s Preparing to unpack .../053-libblas3_3.12.0-3_arm64.deb ... 150s Unpacking libblas3:arm64 (3.12.0-3) ... 150s Selecting previously unselected package libblas-dev:arm64. 150s Preparing to unpack .../054-libblas-dev_3.12.0-3_arm64.deb ... 150s Unpacking libblas-dev:arm64 (3.12.0-3) ... 150s Selecting previously unselected package libsnappy1v5:arm64. 150s Preparing to unpack .../055-libsnappy1v5_1.1.10-1_arm64.deb ... 150s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 150s Selecting previously unselected package libblosc1:arm64. 150s Preparing to unpack .../056-libblosc1_1.21.5+ds-1_arm64.deb ... 150s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 150s Selecting previously unselected package libboost1.83-dev:arm64. 151s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 151s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 152s Selecting previously unselected package libboost-dev:arm64. 152s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 152s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 152s Selecting previously unselected package libbz2-dev:arm64. 152s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 152s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 152s Selecting previously unselected package libpixman-1-0:arm64. 153s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 153s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 153s Selecting previously unselected package libxcb-render0:arm64. 153s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 153s Unpacking libxcb-render0:arm64 (1.15-1) ... 153s Selecting previously unselected package libxcb-shm0:arm64. 153s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 153s Unpacking libxcb-shm0:arm64 (1.15-1) ... 153s Selecting previously unselected package libxrender1:arm64. 153s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 153s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 153s Selecting previously unselected package libcairo2:arm64. 153s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 153s Unpacking libcairo2:arm64 (1.18.0-1) ... 153s Selecting previously unselected package libcurl4-openssl-dev:arm64. 153s Preparing to unpack .../065-libcurl4-openssl-dev_8.5.0-2ubuntu7_arm64.deb ... 153s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 153s Selecting previously unselected package libdatrie1:arm64. 153s Preparing to unpack .../066-libdatrie1_0.2.13-3_arm64.deb ... 153s Unpacking libdatrie1:arm64 (0.2.13-3) ... 153s Selecting previously unselected package libdeflate0:arm64. 153s Preparing to unpack .../067-libdeflate0_1.19-1_arm64.deb ... 153s Unpacking libdeflate0:arm64 (1.19-1) ... 153s Selecting previously unselected package libgraphite2-3:arm64. 153s Preparing to unpack .../068-libgraphite2-3_1.3.14-2_arm64.deb ... 153s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 153s Selecting previously unselected package libharfbuzz0b:arm64. 153s Preparing to unpack .../069-libharfbuzz0b_8.3.0-2_arm64.deb ... 153s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 153s Selecting previously unselected package libsz2:arm64. 154s Preparing to unpack .../070-libsz2_1.1.2-1_arm64.deb ... 154s Unpacking libsz2:arm64 (1.1.2-1) ... 154s Selecting previously unselected package libhdf5-103-1:arm64. 154s Preparing to unpack .../071-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 154s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 154s Selecting previously unselected package libhdf5-cpp-103-1:arm64. 154s Preparing to unpack .../072-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 154s Unpacking libhdf5-cpp-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 154s Selecting previously unselected package libhdf5-fortran-102:arm64. 154s Preparing to unpack .../073-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_arm64.deb ... 154s Unpacking libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 154s Selecting previously unselected package libhdf5-hl-100:arm64. 154s Preparing to unpack .../074-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 154s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 154s Selecting previously unselected package libhdf5-hl-fortran-100:arm64. 154s Preparing to unpack .../075-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_arm64.deb ... 154s Unpacking libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 154s Selecting previously unselected package libhdf5-hl-cpp-100:arm64. 154s Preparing to unpack .../076-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_arm64.deb ... 154s Unpacking libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 154s Selecting previously unselected package zlib1g-dev:arm64. 154s Preparing to unpack .../077-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 154s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 154s Selecting previously unselected package libjpeg-turbo8:arm64. 154s Preparing to unpack .../078-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 154s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 155s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 155s Preparing to unpack .../079-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 155s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 155s Selecting previously unselected package libjpeg8:arm64. 155s Preparing to unpack .../080-libjpeg8_8c-2ubuntu11_arm64.deb ... 155s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 155s Selecting previously unselected package libjpeg8-dev:arm64. 155s Preparing to unpack .../081-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 155s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 155s Selecting previously unselected package libjpeg-dev:arm64. 155s Preparing to unpack .../082-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 155s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 155s Selecting previously unselected package libaec-dev:arm64. 155s Preparing to unpack .../083-libaec-dev_1.1.2-1_arm64.deb ... 155s Unpacking libaec-dev:arm64 (1.1.2-1) ... 155s Selecting previously unselected package libssl-dev:arm64. 155s Preparing to unpack .../084-libssl-dev_3.0.13-0ubuntu1_arm64.deb ... 155s Unpacking libssl-dev:arm64 (3.0.13-0ubuntu1) ... 155s Selecting previously unselected package libhdf5-dev. 155s Preparing to unpack .../085-libhdf5-dev_1.10.10+repack-3ubuntu1_arm64.deb ... 155s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 155s Selecting previously unselected package x11-common. 156s Preparing to unpack .../086-x11-common_1%3a7.7+23ubuntu2_all.deb ... 156s Unpacking x11-common (1:7.7+23ubuntu2) ... 156s Selecting previously unselected package libice6:arm64. 156s Preparing to unpack .../087-libice6_2%3a1.0.10-1build2_arm64.deb ... 156s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 156s Selecting previously unselected package libicu-dev:arm64. 156s Preparing to unpack .../088-libicu-dev_74.2-1ubuntu1_arm64.deb ... 156s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 156s Selecting previously unselected package libjs-bootstrap. 156s Preparing to unpack .../089-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 156s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 156s Selecting previously unselected package libjs-popper.js. 157s Preparing to unpack .../090-libjs-popper.js_1.16.1+ds-6_all.deb ... 157s Unpacking libjs-popper.js (1.16.1+ds-6) ... 157s Selecting previously unselected package libjs-bootstrap4. 157s Preparing to unpack .../091-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 157s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 157s Selecting previously unselected package libjs-d3. 157s Preparing to unpack .../092-libjs-d3_3.5.17-4_all.deb ... 157s Unpacking libjs-d3 (3.5.17-4) ... 157s Selecting previously unselected package libjs-es5-shim. 157s Preparing to unpack .../093-libjs-es5-shim_4.6.7-2_all.deb ... 157s Unpacking libjs-es5-shim (4.6.7-2) ... 157s Selecting previously unselected package libjs-highlight.js. 157s Preparing to unpack .../094-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 157s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 157s Selecting previously unselected package libjs-jquery. 157s Preparing to unpack .../095-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 157s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 157s Selecting previously unselected package libjs-jquery-datatables. 157s Preparing to unpack .../096-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 157s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 157s Selecting previously unselected package libjs-sifter.js. 157s Preparing to unpack .../097-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 157s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 157s Selecting previously unselected package libjs-microplugin.js. 157s Preparing to unpack .../098-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 157s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 157s Selecting previously unselected package libjs-jquery-selectize.js. 158s Preparing to unpack .../099-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 158s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 158s Selecting previously unselected package libjs-jquery-ui. 158s Preparing to unpack .../100-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 158s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 158s Selecting previously unselected package libjs-json. 158s Preparing to unpack .../101-libjs-json_0~20221030+~1.0.8-1_all.deb ... 158s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 158s Selecting previously unselected package libjs-prettify. 158s Preparing to unpack .../102-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 158s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 158s Selecting previously unselected package liblapack3:arm64. 158s Preparing to unpack .../103-liblapack3_3.12.0-3_arm64.deb ... 158s Unpacking liblapack3:arm64 (3.12.0-3) ... 158s Selecting previously unselected package liblapack-dev:arm64. 158s Preparing to unpack .../104-liblapack-dev_3.12.0-3_arm64.deb ... 158s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 159s Selecting previously unselected package liblerc4:arm64. 159s Preparing to unpack .../105-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 159s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 160s Selecting previously unselected package liblua5.4-0:arm64. 160s Preparing to unpack .../106-liblua5.4-0_5.4.6-3_arm64.deb ... 160s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 160s Selecting previously unselected package libncurses-dev:arm64. 161s Preparing to unpack .../107-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 161s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 161s Selecting previously unselected package libthai-data. 161s Preparing to unpack .../108-libthai-data_0.1.29-2_all.deb ... 161s Unpacking libthai-data (0.1.29-2) ... 161s Selecting previously unselected package libthai0:arm64. 161s Preparing to unpack .../109-libthai0_0.1.29-2_arm64.deb ... 161s Unpacking libthai0:arm64 (0.1.29-2) ... 161s Selecting previously unselected package libpango-1.0-0:arm64. 161s Preparing to unpack .../110-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 161s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 161s Selecting previously unselected package libpangoft2-1.0-0:arm64. 161s Preparing to unpack .../111-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 161s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 161s Selecting previously unselected package libpangocairo-1.0-0:arm64. 162s Preparing to unpack .../112-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 162s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 162s Selecting previously unselected package libpaper1:arm64. 162s Preparing to unpack .../113-libpaper1_1.1.29_arm64.deb ... 162s Unpacking libpaper1:arm64 (1.1.29) ... 162s Selecting previously unselected package libpaper-utils. 162s Preparing to unpack .../114-libpaper-utils_1.1.29_arm64.deb ... 162s Unpacking libpaper-utils (1.1.29) ... 162s Selecting previously unselected package libpcre2-16-0:arm64. 162s Preparing to unpack .../115-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 162s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 162s Selecting previously unselected package libpcre2-32-0:arm64. 162s Preparing to unpack .../116-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 162s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 162s Selecting previously unselected package libpcre2-posix3:arm64. 162s Preparing to unpack .../117-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 162s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 162s Selecting previously unselected package libpcre2-dev:arm64. 162s Preparing to unpack .../118-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 162s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 162s Selecting previously unselected package libpkgconf3:arm64. 162s Preparing to unpack .../119-libpkgconf3_1.8.1-2_arm64.deb ... 162s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 162s Selecting previously unselected package libpng-dev:arm64. 163s Preparing to unpack .../120-libpng-dev_1.6.43-3_arm64.deb ... 163s Unpacking libpng-dev:arm64 (1.6.43-3) ... 163s Selecting previously unselected package libreadline-dev:arm64. 163s Preparing to unpack .../121-libreadline-dev_8.2-3.1_arm64.deb ... 163s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 163s Selecting previously unselected package libsharpyuv0:arm64. 163s Preparing to unpack .../122-libsharpyuv0_1.3.2-0.4_arm64.deb ... 163s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 163s Selecting previously unselected package libsm6:arm64. 163s Preparing to unpack .../123-libsm6_2%3a1.2.3-1build2_arm64.deb ... 163s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 163s Selecting previously unselected package libtcl8.6:arm64. 163s Preparing to unpack .../124-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 163s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 163s Selecting previously unselected package libjbig0:arm64. 163s Preparing to unpack .../125-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 163s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 163s Selecting previously unselected package libwebp7:arm64. 163s Preparing to unpack .../126-libwebp7_1.3.2-0.4_arm64.deb ... 163s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 163s Selecting previously unselected package libtiff6:arm64. 163s Preparing to unpack .../127-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 163s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 163s Selecting previously unselected package libxft2:arm64. 163s Preparing to unpack .../128-libxft2_2.3.6-1_arm64.deb ... 163s Unpacking libxft2:arm64 (2.3.6-1) ... 163s Selecting previously unselected package libxss1:arm64. 163s Preparing to unpack .../129-libxss1_1%3a1.2.3-1build2_arm64.deb ... 163s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 163s Selecting previously unselected package libtk8.6:arm64. 163s Preparing to unpack .../130-libtk8.6_8.6.13-2_arm64.deb ... 163s Unpacking libtk8.6:arm64 (8.6.13-2) ... 163s Selecting previously unselected package libxt6t64:arm64. 164s Preparing to unpack .../131-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 164s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 164s Selecting previously unselected package zip. 164s Preparing to unpack .../132-zip_3.0-13_arm64.deb ... 164s Unpacking zip (3.0-13) ... 164s Selecting previously unselected package unzip. 164s Preparing to unpack .../133-unzip_6.0-28ubuntu3_arm64.deb ... 164s Unpacking unzip (6.0-28ubuntu3) ... 164s Selecting previously unselected package xdg-utils. 164s Preparing to unpack .../134-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 164s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 164s Selecting previously unselected package r-base-core. 164s Preparing to unpack .../135-r-base-core_4.3.3-2build1_arm64.deb ... 164s Unpacking r-base-core (4.3.3-2build1) ... 164s Selecting previously unselected package r-cran-littler. 164s Preparing to unpack .../136-r-cran-littler_0.3.19-1_arm64.deb ... 164s Unpacking r-cran-littler (0.3.19-1) ... 164s Selecting previously unselected package littler. 164s Preparing to unpack .../137-littler_0.3.19-1_all.deb ... 164s Unpacking littler (0.3.19-1) ... 164s Selecting previously unselected package node-bootstrap-sass. 164s Preparing to unpack .../138-node-bootstrap-sass_3.4.3-2_all.deb ... 164s Unpacking node-bootstrap-sass (3.4.3-2) ... 164s Selecting previously unselected package node-html5shiv. 164s Preparing to unpack .../139-node-html5shiv_3.7.3+dfsg-5_all.deb ... 164s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 164s Selecting previously unselected package node-normalize.css. 164s Preparing to unpack .../140-node-normalize.css_8.0.1-5_all.deb ... 164s Unpacking node-normalize.css (8.0.1-5) ... 164s Selecting previously unselected package pandoc-data. 164s Preparing to unpack .../141-pandoc-data_3.1.3-1_all.deb ... 164s Unpacking pandoc-data (3.1.3-1) ... 165s Selecting previously unselected package pandoc. 165s Preparing to unpack .../142-pandoc_3.1.3+ds-2_arm64.deb ... 165s Unpacking pandoc (3.1.3+ds-2) ... 166s Selecting previously unselected package pkgconf-bin. 166s Preparing to unpack .../143-pkgconf-bin_1.8.1-2_arm64.deb ... 166s Unpacking pkgconf-bin (1.8.1-2) ... 166s Selecting previously unselected package pkgconf:arm64. 166s Preparing to unpack .../144-pkgconf_1.8.1-2_arm64.deb ... 166s Unpacking pkgconf:arm64 (1.8.1-2) ... 166s Selecting previously unselected package pkg-config:arm64. 166s Preparing to unpack .../145-pkg-config_1.8.1-2_arm64.deb ... 166s Unpacking pkg-config:arm64 (1.8.1-2) ... 166s Selecting previously unselected package liblzma-dev:arm64. 166s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 166s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 166s Selecting previously unselected package r-base-dev. 166s Preparing to unpack .../147-r-base-dev_4.3.3-2build1_all.deb ... 166s Unpacking r-base-dev (4.3.3-2build1) ... 166s Selecting previously unselected package pkg-r-autopkgtest. 166s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 166s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 166s Selecting previously unselected package r-bioc-biocgenerics. 166s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 166s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 166s Selecting previously unselected package r-bioc-biobase. 166s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 166s Unpacking r-bioc-biobase (2.62.0-1) ... 166s Selecting previously unselected package r-bioc-s4vectors. 166s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 166s Selecting previously unselected package r-bioc-iranges. 166s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 166s Unpacking r-bioc-iranges (2.36.0-1) ... 166s Selecting previously unselected package r-cran-dbi. 166s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 166s Unpacking r-cran-dbi (1.2.2-1) ... 166s Selecting previously unselected package r-cran-bit. 166s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 166s Unpacking r-cran-bit (4.0.5-1) ... 166s Selecting previously unselected package r-cran-bit64. 166s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 166s Unpacking r-cran-bit64 (4.0.5-1) ... 166s Selecting previously unselected package r-cran-rlang. 166s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 166s Unpacking r-cran-rlang (1.1.3-1) ... 166s Selecting previously unselected package r-cran-cli. 166s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 166s Unpacking r-cran-cli (3.6.2-1) ... 166s Selecting previously unselected package r-cran-glue. 166s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 166s Unpacking r-cran-glue (1.7.0-1) ... 166s Selecting previously unselected package r-cran-lifecycle. 166s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 166s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 166s Selecting previously unselected package r-cran-vctrs. 166s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 166s Unpacking r-cran-vctrs (0.6.5-1) ... 166s Selecting previously unselected package r-cran-blob. 167s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 167s Unpacking r-cran-blob (1.2.4-1) ... 167s Selecting previously unselected package r-cran-fastmap. 167s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 167s Unpacking r-cran-fastmap (1.1.1-1) ... 167s Selecting previously unselected package r-cran-cachem. 167s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 167s Unpacking r-cran-cachem (1.0.8-1) ... 167s Selecting previously unselected package r-cran-memoise. 167s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 167s Unpacking r-cran-memoise (2.0.1-1) ... 167s Selecting previously unselected package r-cran-pkgconfig. 167s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 167s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 167s Selecting previously unselected package r-cran-plogr. 167s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 167s Unpacking r-cran-plogr (0.2.0-3build1) ... 167s Selecting previously unselected package r-cran-cpp11. 167s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 167s Unpacking r-cran-cpp11 (0.4.7-1) ... 167s Selecting previously unselected package r-cran-rsqlite. 167s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 167s Unpacking r-cran-rsqlite (2.3.4-1) ... 167s Selecting previously unselected package r-cran-curl. 167s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 167s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 167s Selecting previously unselected package r-cran-jsonlite. 167s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 167s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 167s Selecting previously unselected package r-cran-mime. 167s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 167s Unpacking r-cran-mime (0.12-1) ... 167s Selecting previously unselected package r-cran-sys. 167s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 167s Unpacking r-cran-sys (3.4.2-1) ... 167s Selecting previously unselected package r-cran-askpass. 167s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 167s Unpacking r-cran-askpass (1.2.0-1) ... 167s Selecting previously unselected package r-cran-openssl. 167s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 167s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 167s Selecting previously unselected package r-cran-r6. 167s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 167s Unpacking r-cran-r6 (2.5.1-1) ... 167s Selecting previously unselected package r-cran-httr. 167s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 167s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 167s Selecting previously unselected package r-cran-png. 167s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 167s Unpacking r-cran-png (0.1-8-1) ... 167s Selecting previously unselected package r-bioc-zlibbioc. 167s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 167s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 167s Selecting previously unselected package r-bioc-xvector. 167s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 167s Unpacking r-bioc-xvector (0.42.0-1) ... 167s Selecting previously unselected package r-cran-bitops. 167s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 167s Unpacking r-cran-bitops (1.0-7-1) ... 167s Selecting previously unselected package r-cran-rcurl. 167s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 167s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 168s Selecting previously unselected package r-bioc-genomeinfodbdata. 168s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 168s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 168s Selecting previously unselected package r-bioc-genomeinfodb. 168s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 168s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 168s Selecting previously unselected package r-cran-crayon. 168s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 168s Unpacking r-cran-crayon (1.5.2-1) ... 168s Selecting previously unselected package r-bioc-biostrings. 168s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 168s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 168s Selecting previously unselected package r-bioc-keggrest. 168s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 168s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 168s Selecting previously unselected package r-bioc-annotationdbi. 168s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 168s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 168s Selecting previously unselected package r-cran-xml. 168s Preparing to unpack .../188-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 168s Unpacking r-cran-xml (3.99-0.16.1-1) ... 168s Selecting previously unselected package r-cran-xtable. 168s Preparing to unpack .../189-r-cran-xtable_1%3a1.8-4-2_all.deb ... 168s Unpacking r-cran-xtable (1:1.8-4-2) ... 168s Selecting previously unselected package r-bioc-annotate. 168s Preparing to unpack .../190-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 168s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 168s Selecting previously unselected package r-cran-lattice. 168s Preparing to unpack .../191-r-cran-lattice_0.22-5-1_arm64.deb ... 168s Unpacking r-cran-lattice (0.22-5-1) ... 168s Selecting previously unselected package r-cran-matrix. 168s Preparing to unpack .../192-r-cran-matrix_1.6-5-1_arm64.deb ... 168s Unpacking r-cran-matrix (1.6-5-1) ... 168s Selecting previously unselected package r-cran-matrixstats. 168s Preparing to unpack .../193-r-cran-matrixstats_1.2.0-1_arm64.deb ... 168s Unpacking r-cran-matrixstats (1.2.0-1) ... 169s Selecting previously unselected package r-bioc-matrixgenerics. 169s Preparing to unpack .../194-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 169s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 169s Selecting previously unselected package r-cran-abind. 169s Preparing to unpack .../195-r-cran-abind_1.4-5-2_all.deb ... 169s Unpacking r-cran-abind (1.4-5-2) ... 169s Selecting previously unselected package r-bioc-s4arrays. 169s Preparing to unpack .../196-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 169s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 169s Selecting previously unselected package r-bioc-sparsearray. 169s Preparing to unpack .../197-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 169s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 169s Selecting previously unselected package r-bioc-delayedarray. 169s Preparing to unpack .../198-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 169s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 169s Selecting previously unselected package r-cran-pkgkitten. 169s Preparing to unpack .../199-r-cran-pkgkitten_0.2.3-1_all.deb ... 169s Unpacking r-cran-pkgkitten (0.2.3-1) ... 169s Selecting previously unselected package r-cran-rcpp. 169s Preparing to unpack .../200-r-cran-rcpp_1.0.12-1_arm64.deb ... 169s Unpacking r-cran-rcpp (1.0.12-1) ... 169s Selecting previously unselected package r-bioc-beachmat. 169s Preparing to unpack .../201-r-bioc-beachmat_2.18.1+ds-1_arm64.deb ... 169s Unpacking r-bioc-beachmat (2.18.1+ds-1) ... 169s Selecting previously unselected package r-bioc-biocio. 169s Preparing to unpack .../202-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 169s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 169s Selecting previously unselected package r-cran-formatr. 169s Preparing to unpack .../203-r-cran-formatr_1.14-1_all.deb ... 169s Unpacking r-cran-formatr (1.14-1) ... 169s Selecting previously unselected package r-cran-lambda.r. 169s Preparing to unpack .../204-r-cran-lambda.r_1.2.4-2build1_all.deb ... 169s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 169s Selecting previously unselected package r-cran-futile.options. 169s Preparing to unpack .../205-r-cran-futile.options_1.0.1-3build1_all.deb ... 169s Unpacking r-cran-futile.options (1.0.1-3build1) ... 169s Selecting previously unselected package r-cran-futile.logger. 169s Preparing to unpack .../206-r-cran-futile.logger_1.4.3-4build1_all.deb ... 169s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 169s Selecting previously unselected package r-cran-snow. 169s Preparing to unpack .../207-r-cran-snow_1%3a0.4.4-2_all.deb ... 169s Unpacking r-cran-snow (1:0.4.4-2) ... 170s Selecting previously unselected package r-cran-codetools. 170s Preparing to unpack .../208-r-cran-codetools_0.2-19-1_all.deb ... 170s Unpacking r-cran-codetools (0.2-19-1) ... 170s Selecting previously unselected package r-cran-bh. 170s Preparing to unpack .../209-r-cran-bh_1.84.0-1_all.deb ... 170s Unpacking r-cran-bh (1.84.0-1) ... 170s Selecting previously unselected package r-bioc-biocparallel. 170s Preparing to unpack .../210-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 170s Unpacking r-bioc-biocparallel (1.36.0-1) ... 170s Selecting previously unselected package r-bioc-genomicranges. 170s Preparing to unpack .../211-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 170s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 170s Selecting previously unselected package r-bioc-rhtslib. 170s Preparing to unpack .../212-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 170s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 170s Selecting previously unselected package r-bioc-rsamtools. 170s Preparing to unpack .../213-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 170s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 170s Selecting previously unselected package r-bioc-summarizedexperiment. 170s Preparing to unpack .../214-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 170s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 170s Selecting previously unselected package r-bioc-genomicalignments. 170s Preparing to unpack .../215-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 170s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 170s Selecting previously unselected package r-cran-rjson. 170s Preparing to unpack .../216-r-cran-rjson_0.2.21-1_arm64.deb ... 170s Unpacking r-cran-rjson (0.2.21-1) ... 170s Selecting previously unselected package r-cran-yaml. 170s Preparing to unpack .../217-r-cran-yaml_2.3.8-1_arm64.deb ... 170s Unpacking r-cran-yaml (2.3.8-1) ... 170s Selecting previously unselected package r-cran-restfulr. 170s Preparing to unpack .../218-r-cran-restfulr_0.0.15-1_arm64.deb ... 170s Unpacking r-cran-restfulr (0.0.15-1) ... 170s Selecting previously unselected package r-bioc-rtracklayer. 170s Preparing to unpack .../219-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 170s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 170s Selecting previously unselected package r-bioc-bsgenome. 170s Preparing to unpack .../220-r-bioc-bsgenome_1.70.2-1_all.deb ... 170s Unpacking r-bioc-bsgenome (1.70.2-1) ... 170s Selecting previously unselected package r-cran-farver. 170s Preparing to unpack .../221-r-cran-farver_2.1.1-1_arm64.deb ... 170s Unpacking r-cran-farver (2.1.1-1) ... 170s Selecting previously unselected package r-cran-labeling. 170s Preparing to unpack .../222-r-cran-labeling_0.4.3-1_all.deb ... 170s Unpacking r-cran-labeling (0.4.3-1) ... 170s Selecting previously unselected package r-cran-colorspace. 170s Preparing to unpack .../223-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 170s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 171s Selecting previously unselected package r-cran-munsell. 171s Preparing to unpack .../224-r-cran-munsell_0.5.0-2build1_all.deb ... 171s Unpacking r-cran-munsell (0.5.0-2build1) ... 171s Selecting previously unselected package r-cran-rcolorbrewer. 171s Preparing to unpack .../225-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 171s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 171s Selecting previously unselected package r-cran-viridislite. 171s Preparing to unpack .../226-r-cran-viridislite_0.4.2-2_all.deb ... 171s Unpacking r-cran-viridislite (0.4.2-2) ... 171s Selecting previously unselected package r-cran-scales. 171s Preparing to unpack .../227-r-cran-scales_1.3.0-1_all.deb ... 171s Unpacking r-cran-scales (1.3.0-1) ... 171s Selecting previously unselected package r-cran-locfit. 171s Preparing to unpack .../228-r-cran-locfit_1.5-9.8-1_arm64.deb ... 171s Unpacking r-cran-locfit (1.5-9.8-1) ... 171s Selecting previously unselected package r-cran-gtools. 171s Preparing to unpack .../229-r-cran-gtools_3.9.5-1_arm64.deb ... 171s Unpacking r-cran-gtools (3.9.5-1) ... 171s Selecting previously unselected package r-cran-data.table. 171s Preparing to unpack .../230-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 171s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 171s Selecting previously unselected package r-cran-r.methodss3. 171s Preparing to unpack .../231-r-cran-r.methodss3_1.8.2-1_all.deb ... 171s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 171s Selecting previously unselected package r-cran-r.oo. 171s Preparing to unpack .../232-r-cran-r.oo_1.26.0-1_all.deb ... 171s Unpacking r-cran-r.oo (1.26.0-1) ... 171s Selecting previously unselected package r-cran-r.utils. 171s Preparing to unpack .../233-r-cran-r.utils_2.12.3-1_all.deb ... 171s Unpacking r-cran-r.utils (2.12.3-1) ... 171s Selecting previously unselected package r-bioc-sparsematrixstats. 171s Preparing to unpack .../234-r-bioc-sparsematrixstats_1.14.0+dfsg-1_arm64.deb ... 171s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 171s Selecting previously unselected package r-bioc-delayedmatrixstats. 171s Preparing to unpack .../235-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 171s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 171s Selecting previously unselected package r-cran-permute. 171s Preparing to unpack .../236-r-cran-permute_0.9-7-1_all.deb ... 171s Unpacking r-cran-permute (0.9-7-1) ... 171s Selecting previously unselected package r-cran-statmod. 171s Preparing to unpack .../237-r-cran-statmod_1.5.0-1_arm64.deb ... 171s Unpacking r-cran-statmod (1.5.0-1) ... 171s Selecting previously unselected package r-bioc-limma. 171s Preparing to unpack .../238-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 171s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 171s Selecting previously unselected package r-bioc-rhdf5lib. 171s Preparing to unpack .../239-r-bioc-rhdf5lib_1.24.2+dfsg-1_arm64.deb ... 171s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 171s Selecting previously unselected package r-bioc-rhdf5filters. 171s Preparing to unpack .../240-r-bioc-rhdf5filters_1.14.1+dfsg-3_arm64.deb ... 171s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 171s Selecting previously unselected package r-bioc-rhdf5. 171s Preparing to unpack .../241-r-bioc-rhdf5_2.46.1+dfsg-1_arm64.deb ... 171s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 171s Selecting previously unselected package r-bioc-hdf5array. 171s Preparing to unpack .../242-r-bioc-hdf5array_1.30.1-1_arm64.deb ... 171s Unpacking r-bioc-hdf5array (1.30.1-1) ... 172s Selecting previously unselected package r-bioc-bsseq. 172s Preparing to unpack .../243-r-bioc-bsseq_1.38.0+dfsg-1_arm64.deb ... 172s Unpacking r-bioc-bsseq (1.38.0+dfsg-1) ... 172s Selecting previously unselected package r-cran-evaluate. 172s Preparing to unpack .../244-r-cran-evaluate_0.23-1_all.deb ... 172s Unpacking r-cran-evaluate (0.23-1) ... 172s Selecting previously unselected package r-cran-xfun. 172s Preparing to unpack .../245-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 172s Unpacking r-cran-xfun (0.41+dfsg-1) ... 172s Selecting previously unselected package r-cran-highr. 172s Preparing to unpack .../246-r-cran-highr_0.10+dfsg-1_all.deb ... 172s Unpacking r-cran-highr (0.10+dfsg-1) ... 172s Selecting previously unselected package libjs-mathjax. 172s Preparing to unpack .../247-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 172s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 172s Selecting previously unselected package r-cran-knitr. 172s Preparing to unpack .../248-r-cran-knitr_1.45+dfsg-1_all.deb ... 172s Unpacking r-cran-knitr (1.45+dfsg-1) ... 172s Selecting previously unselected package r-cran-mass. 172s Preparing to unpack .../249-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 172s Unpacking r-cran-mass (7.3-60.0.1-1) ... 173s Selecting previously unselected package r-cran-kernsmooth. 173s Preparing to unpack .../250-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 173s Unpacking r-cran-kernsmooth (2.23-22-1) ... 173s Selecting previously unselected package r-cran-matrixcalc. 173s Preparing to unpack .../251-r-cran-matrixcalc_1.0.6-1_all.deb ... 173s Unpacking r-cran-matrixcalc (1.0.6-1) ... 173s Selecting previously unselected package r-cran-base64enc. 173s Preparing to unpack .../252-r-cran-base64enc_0.1-3-3_arm64.deb ... 173s Unpacking r-cran-base64enc (0.1-3-3) ... 173s Selecting previously unselected package r-cran-digest. 173s Preparing to unpack .../253-r-cran-digest_0.6.34-1_arm64.deb ... 173s Unpacking r-cran-digest (0.6.34-1) ... 173s Selecting previously unselected package r-cran-ellipsis. 173s Preparing to unpack .../254-r-cran-ellipsis_0.3.2-2_arm64.deb ... 173s Unpacking r-cran-ellipsis (0.3.2-2) ... 173s Selecting previously unselected package r-cran-htmltools. 173s Preparing to unpack .../255-r-cran-htmltools_0.5.7-1_arm64.deb ... 173s Unpacking r-cran-htmltools (0.5.7-1) ... 173s Selecting previously unselected package r-cran-jquerylib. 173s Preparing to unpack .../256-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 173s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 173s Selecting previously unselected package r-cran-fs. 173s Preparing to unpack .../257-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 173s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 173s Selecting previously unselected package r-cran-rappdirs. 173s Preparing to unpack .../258-r-cran-rappdirs_0.3.3-1_arm64.deb ... 173s Unpacking r-cran-rappdirs (0.3.3-1) ... 173s Selecting previously unselected package r-cran-sass. 173s Preparing to unpack .../259-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 173s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 173s Selecting previously unselected package r-cran-bslib. 173s Preparing to unpack .../260-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 173s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 173s Selecting previously unselected package r-cran-fontawesome. 173s Preparing to unpack .../261-r-cran-fontawesome_0.5.2-1_all.deb ... 173s Unpacking r-cran-fontawesome (0.5.2-1) ... 173s Selecting previously unselected package r-cran-magrittr. 173s Preparing to unpack .../262-r-cran-magrittr_2.0.3-1_arm64.deb ... 173s Unpacking r-cran-magrittr (2.0.3-1) ... 173s Selecting previously unselected package r-cran-stringi. 173s Preparing to unpack .../263-r-cran-stringi_1.8.3-1_arm64.deb ... 173s Unpacking r-cran-stringi (1.8.3-1) ... 173s Selecting previously unselected package r-cran-stringr. 173s Preparing to unpack .../264-r-cran-stringr_1.5.1-1_all.deb ... 173s Unpacking r-cran-stringr (1.5.1-1) ... 173s Selecting previously unselected package r-cran-tinytex. 173s Preparing to unpack .../265-r-cran-tinytex_0.49-1_all.deb ... 173s Unpacking r-cran-tinytex (0.49-1) ... 173s Selecting previously unselected package libjs-modernizr. 173s Preparing to unpack .../266-libjs-modernizr_2.6.2+ds1-5_all.deb ... 173s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 174s Selecting previously unselected package r-cran-later. 174s Preparing to unpack .../267-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 174s Unpacking r-cran-later (1.3.2+dfsg-1) ... 174s Selecting previously unselected package r-cran-promises. 174s Preparing to unpack .../268-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 174s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 174s Selecting previously unselected package r-cran-httpuv. 174s Preparing to unpack .../269-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 174s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 174s Selecting previously unselected package r-cran-sourcetools. 174s Preparing to unpack .../270-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 174s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 174s Selecting previously unselected package r-cran-withr. 174s Preparing to unpack .../271-r-cran-withr_2.5.0-1_all.deb ... 174s Unpacking r-cran-withr (2.5.0-1) ... 174s Selecting previously unselected package r-cran-commonmark. 174s Preparing to unpack .../272-r-cran-commonmark_1.9.1-1_arm64.deb ... 174s Unpacking r-cran-commonmark (1.9.1-1) ... 174s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 174s Preparing to unpack .../273-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 174s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 174s Selecting previously unselected package r-cran-shiny. 174s Preparing to unpack .../274-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 174s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-rmarkdown. 174s Preparing to unpack .../275-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 174s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 174s Selecting previously unselected package r-bioc-dss. 174s Preparing to unpack .../276-r-bioc-dss_2.50.1+dfsg-1_arm64.deb ... 174s Unpacking r-bioc-dss (2.50.1+dfsg-1) ... 174s Selecting previously unselected package r-cran-gtable. 175s Preparing to unpack .../277-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 175s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 175s Selecting previously unselected package r-cran-isoband. 175s Preparing to unpack .../278-r-cran-isoband_0.2.7-1_arm64.deb ... 175s Unpacking r-cran-isoband (0.2.7-1) ... 175s Selecting previously unselected package r-cran-nlme. 175s Preparing to unpack .../279-r-cran-nlme_3.1.164-1_arm64.deb ... 175s Unpacking r-cran-nlme (3.1.164-1) ... 175s Selecting previously unselected package r-cran-mgcv. 175s Preparing to unpack .../280-r-cran-mgcv_1.9-1-1_arm64.deb ... 175s Unpacking r-cran-mgcv (1.9-1-1) ... 175s Selecting previously unselected package r-cran-fansi. 175s Preparing to unpack .../281-r-cran-fansi_1.0.5-1_arm64.deb ... 175s Unpacking r-cran-fansi (1.0.5-1) ... 175s Selecting previously unselected package r-cran-utf8. 175s Preparing to unpack .../282-r-cran-utf8_1.2.4-1_arm64.deb ... 175s Unpacking r-cran-utf8 (1.2.4-1) ... 175s Selecting previously unselected package r-cran-pillar. 176s Preparing to unpack .../283-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 176s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 176s Selecting previously unselected package r-cran-tibble. 176s Preparing to unpack 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(1.17.1+dfsg-1) ... 181s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 181s Setting up r-bioc-annotationdbi (1.64.1-1) ... 181s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 181s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 181s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 181s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 181s Setting up r-bioc-beachmat (2.18.1+ds-1) ... 181s Setting up r-bioc-genefilter (1.84.0-1) ... 181s Setting up r-bioc-genomicalignments (1.38.2-1) ... 181s Setting up r-bioc-rtracklayer (1.62.0-1) ... 181s Setting up r-bioc-sva (3.50.0-1) ... 181s Setting up r-bioc-bsgenome (1.70.2-1) ... 181s Setting up r-bioc-bsseq (1.38.0+dfsg-1) ... 181s Setting up r-bioc-dss (2.50.1+dfsg-1) ... 181s Setting up r-bioc-demixt (1.18.0+dfsg-1) ... 181s Setting up autopkgtest-satdep (0) ... 181s Processing triggers for man-db (2.12.0-3) ... 182s Processing triggers for install-info (7.1-3) ... 182s Processing triggers for libc-bin (2.39-0ubuntu2) ... 200s (Reading database ... 116822 files and directories currently installed.) 200s Removing autopkgtest-satdep (0) ... 200s autopkgtest [17:30:23]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 200s autopkgtest [17:30:23]: test pkg-r-autopkgtest: [----------------------- 201s Test: Try to load the R library DeMixT 201s 201s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 201s Copyright (C) 2024 The R Foundation for Statistical Computing 201s Platform: aarch64-unknown-linux-gnu (64-bit) 201s 201s R is free software and comes with ABSOLUTELY NO WARRANTY. 201s You are welcome to redistribute it under certain conditions. 201s Type 'license()' or 'licence()' for distribution details. 201s 201s R is a collaborative project with many contributors. 201s Type 'contributors()' for more information and 201s 'citation()' on how to cite R or R packages in publications. 201s 201s Type 'demo()' for some demos, 'help()' for on-line help, or 201s 'help.start()' for an HTML browser interface to help. 201s Type 'q()' to quit R. 201s 201s > library('DeMixT') 201s Loading required package: parallel 201s Loading required package: Rcpp 201s Loading required package: SummarizedExperiment 201s Loading required package: MatrixGenerics 201s Loading required package: matrixStats 201s 201s Attaching package: ‘MatrixGenerics’ 201s 201s The following objects are masked from ‘package:matrixStats’: 201s 201s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 201s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 201s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 201s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 201s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 201s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 201s colWeightedMeans, colWeightedMedians, colWeightedSds, 201s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 201s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 201s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 201s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 201s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 201s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 201s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 201s rowWeightedSds, rowWeightedVars 201s 201s Loading required package: GenomicRanges 201s Loading required package: stats4 201s Loading required package: BiocGenerics 202s 202s Attaching package: ‘BiocGenerics’ 202s 202s The following objects are masked from ‘package:stats’: 202s 202s IQR, mad, sd, var, xtabs 202s 202s The following objects are masked from ‘package:base’: 202s 202s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 202s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 202s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 202s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 202s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 202s table, tapply, union, unique, unsplit, which.max, which.min 202s 202s Loading required package: S4Vectors 202s 202s Attaching package: ‘S4Vectors’ 202s 202s The following object is masked from ‘package:utils’: 202s 202s findMatches 202s 202s The following objects are masked from ‘package:base’: 202s 202s expand.grid, I, unname 202s 202s Loading required package: IRanges 203s Loading required package: GenomeInfoDb 204s Loading required package: Biobase 204s Welcome to Bioconductor 204s 204s Vignettes contain introductory material; view with 204s 'browseVignettes()'. To cite Bioconductor, see 204s 'citation("Biobase")', and for packages 'citation("pkgname")'. 204s 204s 204s Attaching package: ‘Biobase’ 204s 204s The following object is masked from ‘package:MatrixGenerics’: 204s 204s rowMedians 204s 204s The following objects are masked from ‘package:matrixStats’: 204s 204s anyMissing, rowMedians 204s 207s Loading required package: knitr 207s Loading required package: KernSmooth 207s KernSmooth 2.23 loaded 207s Copyright M. P. Wand 1997-2009 207s Loading required package: matrixcalc 207s Loading required package: rmarkdown 207s Loading required package: DSS 207s Loading required package: BiocParallel 207s Loading required package: bsseq 212s Loading required package: dendextend 213s 213s --------------------- 213s Welcome to dendextend version 1.17.1 213s Type citation('dendextend') for how to cite the package. 213s 213s Type browseVignettes(package = 'dendextend') for the package vignette. 213s The github page is: https://github.com/talgalili/dendextend/ 213s 213s Suggestions and bug-reports can be submitted at: https://github.com/talgalili/dendextend/issues 213s You may ask questions at stackoverflow, use the r and dendextend tags: 213s https://stackoverflow.com/questions/tagged/dendextend 213s 213s To suppress this message use: suppressPackageStartupMessages(library(dendextend)) 213s --------------------- 213s 213s 213s Attaching package: ‘dendextend’ 213s 213s The following object is masked from ‘package:stats’: 213s 213s cutree 213s 213s Loading required package: psych 213s 213s Attaching package: ‘psych’ 213s 213s The following object is masked from ‘package:SummarizedExperiment’: 213s 213s distance 213s 213s The following object is masked from ‘package:GenomicRanges’: 213s 213s distance 213s 213s The following objects are masked from ‘package:IRanges’: 213s 213s distance, reflect 213s 213s Loading required package: sva 213s Loading required package: mgcv 213s Loading required package: nlme 213s 213s Attaching package: ‘nlme’ 213s 213s The following object is masked from ‘package:IRanges’: 213s 213s collapse 213s 213s This is mgcv 1.9-1. For overview type 'help("mgcv-package")'. 213s Loading required package: genefilter 214s 214s Attaching package: ‘genefilter’ 214s 214s The following object is masked from ‘package:psych’: 214s 214s AUC 214s 214s The following objects are masked from ‘package:MatrixGenerics’: 214s 214s rowSds, rowVars 214s 214s The following objects are masked from ‘package:matrixStats’: 214s 214s rowSds, rowVars 214s 214s OpenMP installed. 214s Number of threads = 2 214s Warning messages: 214s 1: replacing previous import ‘ggplot2::%+%’ by ‘psych::%+%’ when loading ‘DeMixT’ 214s 2: replacing previous import ‘SummarizedExperiment::distance’ by ‘psych::distance’ when loading ‘DeMixT’ 214s 3: replacing previous import ‘ggplot2::alpha’ by ‘psych::alpha’ when loading ‘DeMixT’ 214s > 214s > 214s Other tests are currently unsupported! 214s They will be progressively added. 215s autopkgtest [17:30:38]: test pkg-r-autopkgtest: -----------------------] 215s pkg-r-autopkgtest PASS 215s autopkgtest [17:30:38]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 216s autopkgtest [17:30:39]: @@@@@@@@@@@@@@@@@@@@ summary 216s pkg-r-autopkgtest PASS 249s Creating nova instance adt-noble-arm64-r-bioc-demixt-20240316-172702-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...