0s autopkgtest [14:40:22]: starting date and time: 2024-03-16 14:40:22+0000
  0s autopkgtest [14:40:22]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [14:40:22]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8u47cpkp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-decontam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-arm64-19.secgroup --name adt-noble-arm64-r-bioc-decontam-20240316-144022-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
200s autopkgtest [14:43:42]: testbed dpkg architecture: arm64
200s autopkgtest [14:43:42]: testbed apt version: 2.7.12
200s autopkgtest [14:43:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup
202s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
203s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
204s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
204s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB]
204s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB]
205s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
205s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
205s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
205s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
205s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4007 kB]
206s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
206s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB]
206s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
222s Fetched 9093 kB in 8s (1070 kB/s)
223s Reading package lists...
231s Reading package lists...
232s Building dependency tree...
232s Reading state information...
235s Calculating upgrade...
236s The following packages will be REMOVED:
236s   libglib2.0-0 libssl3
236s The following NEW packages will be installed:
236s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
236s The following packages have been kept back:
236s   curl
236s The following packages will be upgraded:
236s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
237s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
237s Need to get 4592 kB of archives.
237s After this operation, 211 kB of additional disk space will be used.
237s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
237s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
237s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
238s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
238s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
238s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
238s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
238s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
242s Fetched 4592 kB in 2s (3031 kB/s)
244s (Reading database ... 
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(Reading database ... 75850 files and directories currently installed.)
244s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
244s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
244s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
244s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
244s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
244s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
244s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
244s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
244s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
244s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
244s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
244s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
244s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
244s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
244s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
244s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
244s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
244s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
244s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
244s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
244s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
244s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
244s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
244s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
244s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
244s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
244s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
244s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
244s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
244s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
244s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
244s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
244s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
244s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
244s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
244s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
244s  fwupd depends on libglib2.0-0 (>= 2.79.0).
244s  bolt depends on libglib2.0-0 (>= 2.56.0).
244s 
244s (Reading database ... 
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(Reading database ... 75850 files and directories currently installed.)
244s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
245s Selecting previously unselected package libglib2.0-0t64:arm64.
245s (Reading database ... 
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(Reading database ... 75825 files and directories currently installed.)
245s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
245s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
245s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
245s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
245s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
245s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
246s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
246s  wget depends on libssl3 (>= 3.0.0).
246s  u-boot-tools depends on libssl3 (>= 3.0.0).
246s  tnftp depends on libssl3 (>= 3.0.0).
246s  tcpdump depends on libssl3 (>= 3.0.0).
246s  systemd-resolved depends on libssl3 (>= 3.0.0).
246s  systemd depends on libssl3 (>= 3.0.0).
246s  sudo depends on libssl3 (>= 3.0.0).
246s  sbsigntool depends on libssl3 (>= 3.0.0).
246s  rsync depends on libssl3 (>= 3.0.0).
246s  python3-cryptography depends on libssl3 (>= 3.0.0).
246s  openssh-server depends on libssl3 (>= 3.0.10).
246s  openssh-client depends on libssl3 (>= 3.0.10).
246s  mtd-utils depends on libssl3 (>= 3.0.0).
246s  mokutil depends on libssl3 (>= 3.0.0).
246s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
246s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
246s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
246s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
246s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
246s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
246s  libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0).
246s  libnvme1 depends on libssl3 (>= 3.0.0).
246s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
246s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
246s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
246s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
246s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
246s  kmod depends on libssl3 (>= 3.0.0).
246s  dhcpcd-base depends on libssl3 (>= 3.0.0).
246s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
246s 
246s (Reading database ... 
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(Reading database ... 75850 files and directories currently installed.)
246s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
247s Selecting previously unselected package libssl3t64:arm64.
247s (Reading database ... 
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(Reading database ... 75839 files and directories currently installed.)
247s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
247s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
248s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
248s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
248s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ...
248s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
248s Preparing to unpack .../readline-common_8.2-3.1_all.deb ...
248s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
248s Selecting previously unselected package xdg-user-dirs.
248s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ...
248s Unpacking xdg-user-dirs (0.18-1) ...
249s Setting up xdg-user-dirs (0.18-1) ...
249s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
249s Setting up libtirpc-common (1.3.4+ds-1.1) ...
249s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
249s No schema files found: doing nothing.
249s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
249s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
249s Setting up openssl (3.0.13-0ubuntu1) ...
249s Setting up readline-common (8.2-3.1) ...
249s Processing triggers for man-db (2.12.0-3) ...
255s Processing triggers for install-info (7.1-3) ...
256s Processing triggers for libc-bin (2.39-0ubuntu2) ...
258s Reading package lists...
259s Building dependency tree...
259s Reading state information...
262s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
265s sh: Attempting to set up Debian/Ubuntu apt sources automatically
265s sh: Distribution appears to be Ubuntu
274s Reading package lists...
275s Building dependency tree...
275s Reading state information...
277s eatmydata is already the newest version (131-1).
277s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
278s Reading package lists...
279s Building dependency tree...
279s Reading state information...
281s dbus is already the newest version (1.14.10-4ubuntu1).
281s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
281s Reading package lists...
282s Building dependency tree...
282s Reading state information...
284s rng-tools-debian is already the newest version (2.4).
284s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
284s Reading package lists...
285s Building dependency tree...
285s Reading state information...
287s The following packages will be REMOVED:
287s   cloud-init* python3-configobj* python3-debconf*
288s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
288s After this operation, 3252 kB disk space will be freed.
289s (Reading database ... 
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(Reading database ... 75866 files and directories currently installed.)
289s Removing cloud-init (24.1.1-0ubuntu1) ...
291s Removing python3-configobj (5.0.8-3) ...
292s Removing python3-debconf (1.5.86) ...
292s Processing triggers for man-db (2.12.0-3) ...
293s (Reading database ... 
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(Reading database ... 75477 files and directories currently installed.)
293s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ...
296s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
296s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
296s invoke-rc.d: policy-rc.d denied execution of try-restart.
297s Reading package lists...
298s Building dependency tree...
298s Reading state information...
300s linux-generic is already the newest version (6.8.0-11.11+1).
300s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
301s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
301s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
301s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
316s Reading package lists...
316s Reading package lists...
317s Building dependency tree...
317s Reading state information...
319s Calculating upgrade...
320s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
321s Reading package lists...
322s Building dependency tree...
322s Reading state information...
324s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
324s autopkgtest [14:45:46]: rebooting testbed after setup commands that affected boot
495s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
526s autopkgtest [14:49:08]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
532s autopkgtest [14:49:14]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-decontam
538s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-decontam 1.22.0+dfsg-2 (dsc) [2140 B]
538s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-decontam 1.22.0+dfsg-2 (tar) [160 kB]
538s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-decontam 1.22.0+dfsg-2 (diff) [4928 B]
540s gpgv: Signature made Mon Feb 12 10:26:02 2024 UTC
540s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
540s gpgv:                issuer "tille@debian.org"
540s gpgv: Can't check signature: No public key
540s dpkg-source: warning: cannot verify inline signature for ./r-bioc-decontam_1.22.0+dfsg-2.dsc: no acceptable signature found
540s autopkgtest [14:49:22]: testing package r-bioc-decontam version 1.22.0+dfsg-2
541s autopkgtest [14:49:23]: build not needed
544s autopkgtest [14:49:26]: test pkg-r-autopkgtest: preparing testbed
547s Reading package lists...
548s Building dependency tree...
548s Reading state information...
549s Starting pkgProblemResolver with broken count: 0
550s Starting 2 pkgProblemResolver with broken count: 0
550s Done
552s The following additional packages will be installed:
552s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
552s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
552s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
552s   g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
552s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
552s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
552s   javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev
552s   libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev
552s   libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev
552s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
552s   libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
552s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
552s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
552s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
552s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
552s   libjs-popper.js libjs-prettify libjs-sifter.js
552s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
552s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
552s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
552s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
552s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
552s   libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev
552s   libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0
552s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7
552s   libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1
552s   libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass
552s   node-html5shiv node-normalize.css pandoc pandoc-data pkg-config
552s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biobase
552s   r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biomformat r-bioc-biostrings
552s   r-bioc-decontam r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges
552s   r-bioc-multtest r-bioc-phyloseq r-bioc-s4vectors r-bioc-xvector
552s   r-bioc-zlibbioc r-cran-ade4 r-cran-ape r-cran-base64enc r-cran-biocmanager
552s   r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli
552s   r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark
552s   r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-digest r-cran-ellipsis
552s   r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome
552s   r-cran-foreach r-cran-fs r-cran-ggplot2 r-cran-glue r-cran-gtable
552s   r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-igraph r-cran-isoband
552s   r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-knitr
552s   r-cran-labeling r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler
552s   r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv
552s   r-cran-mime r-cran-munsell r-cran-nlme r-cran-permute r-cran-pillar
552s   r-cran-pixmap r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-promises
552s   r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp
552s   r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang
552s   r-cran-rmarkdown r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools
552s   r-cran-sp r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble
552s   r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-vegan r-cran-viridislite
552s   r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils
552s   tex-common texlive-base texlive-bibtex-extra texlive-binaries
552s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
552s Suggested packages:
552s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
552s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
552s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2
552s   | lighttpd | httpd liblapack-doc glibc-doc icu-doc libjs-jquery-ui-docs
552s   fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc
552s   readline-doc libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended
552s   texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context
552s   wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex
552s   citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib
552s   r-base-html texlive-plain-generic texlive-fonts-recommended
552s   texlive-fonts-extra texlive-extra-utils texinfo r-bioc-all r-cran-runit
552s   r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools
552s   r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate
552s   r-cran-testthat r-bioc-bsgenome r-bioc-genomicfeatures r-cran-r.utils
552s   r-bioc-genomicalignments r-cran-snow r-bioc-genefilter r-bioc-metagenomeseq
552s   r-bioc-summarizedexperiment r-bioc-shortread r-bioc-graph r-cran-adegraphics
552s   r-cran-adephylo r-cran-deldir r-cran-spdep r-cran-waveslim r-cran-progress
552s   r-cran-doparallel r-cran-gee r-cran-expm clustalw muscle phyml t-coffee
552s   r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs
552s   r-cran-dplyr r-cran-png r-cran-jpeg r-cran-viridis r-cran-rstudioapi
552s   r-cran-covr r-cran-markdown r-cran-magick r-cran-sf r-cran-getopt
552s   r-cran-httr r-cran-sessioninfo r-cran-bit64 r-cran-dbi r-cran-formattable
552s   r-cran-nanotime r-cran-palmerpenguins r-cran-units r-cran-vdiffr
552s   r-cran-roxygen2 r-cran-inline r-cran-bench r-cran-blob r-cran-brio
552s   r-cran-callr r-cran-here r-cran-hms r-cran-pkgbuild r-cran-pkgload
552s   r-cran-purrr r-cran-tidyr r-cran-plm r-cran-zoo debhelper ghostscript gv
552s   | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2
552s   hintview texlive-latex-base-doc wp2latex
552s Recommended packages:
552s   bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools
552s   r-recommended r-doc-html r-cran-phangorn r-bioc-biocversion r-cran-remotes
552s   r-cran-testthat r-cran-curl r-cran-downlit r-cran-htmlwidgets
552s   r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte
552s   r-cran-xml2 r-cran-webshot r-cran-thematic r-cran-callr r-cran-covr
552s   r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami
552s   r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr
552s   r-cran-progress r-cran-bit64 r-cran-bit r-cran-r.utils r-cran-xts
552s   r-cran-nanotime r-cran-zoo r-cran-unitizer r-cran-dplyr r-cran-rsvg
552s   r-cran-spelling r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps
552s   r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart
552s   r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-dbi r-cran-rsqlite
552s   r-cran-waldo r-cran-cairo r-cran-markdown r-bioc-graph r-cran-rgl
552s   r-cran-httr r-cran-r.rsp r-cran-formatr r-cran-gridsvg r-cran-jpeg
552s   r-cran-magick r-cran-png r-cran-reticulate r-cran-tikzdevice
552s   node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-lubridate
552s   r-cran-abind r-cran-doparallel r-cran-itertools r-cran-future r-cran-purrr
552s   r-cran-xml r-cran-usethis r-cran-dygraphs r-cran-dichromat r-cran-hms
552s   r-cran-gstat r-cran-deldir r-cran-terra r-cran-raster r-cran-mockr
552s   r-cran-formattable r-cran-generics r-cran-pkgdown r-cran-zeallot r-cran-renv
552s   r-cran-runit lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl
552s   libx11-protocol-perl x11-utils x11-xserver-utils
552s The following NEW packages will be installed:
552s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
552s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
552s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
552s   fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13
552s   g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
552s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
552s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
552s   javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev
552s   libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev
552s   libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev
552s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
552s   libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
552s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
552s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
552s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
552s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
552s   libjs-popper.js libjs-prettify libjs-sifter.js
552s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
552s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
552s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
552s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
552s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
552s   libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev
552s   libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0
552s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7
552s   libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1
553s   libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass
553s   node-html5shiv node-normalize.css pandoc pandoc-data pkg-config
553s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biobase
553s   r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biomformat r-bioc-biostrings
553s   r-bioc-decontam r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges
553s   r-bioc-multtest r-bioc-phyloseq r-bioc-s4vectors r-bioc-xvector
553s   r-bioc-zlibbioc r-cran-ade4 r-cran-ape r-cran-base64enc r-cran-biocmanager
553s   r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli
553s   r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark
553s   r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-digest r-cran-ellipsis
553s   r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome
553s   r-cran-foreach r-cran-fs r-cran-ggplot2 r-cran-glue r-cran-gtable
553s   r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-igraph r-cran-isoband
553s   r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-knitr
553s   r-cran-labeling r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler
553s   r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv
553s   r-cran-mime r-cran-munsell r-cran-nlme r-cran-permute r-cran-pillar
553s   r-cran-pixmap r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-promises
553s   r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp
553s   r-cran-rcpparmadillo r-cran-rcurl r-cran-reshape2 r-cran-rlang
553s   r-cran-rmarkdown r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools
553s   r-cran-sp r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble
553s   r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-vegan r-cran-viridislite
553s   r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils
553s   tex-common texlive-base texlive-bibtex-extra texlive-binaries
553s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
553s 0 upgraded, 254 newly installed, 0 to remove and 0 not upgraded.
553s Need to get 406 MB/406 MB of archives.
553s After this operation, 1168 MB of additional disk space will be used.
553s Get:1 /tmp/autopkgtest.80VeuB/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B]
553s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
553s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
554s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
554s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB]
554s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
554s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
554s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
554s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
554s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
554s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
555s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
555s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
555s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
555s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
555s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
555s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
555s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
555s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
555s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
555s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
556s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
556s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
556s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
556s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
557s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
557s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
557s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
557s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
557s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
558s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
558s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
558s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
558s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
558s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
558s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
558s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
558s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
558s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
558s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
558s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
558s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
558s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB]
559s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
559s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
559s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
559s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
560s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
560s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
560s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
560s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
560s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B]
560s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB]
560s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB]
560s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB]
560s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
560s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
560s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
560s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
560s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
560s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
560s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
560s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
560s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
560s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
560s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
560s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
560s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
560s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
560s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
561s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
561s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
561s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
561s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
561s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
561s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
561s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
561s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
561s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB]
561s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
561s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
561s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
562s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
562s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
562s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
562s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
562s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
562s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
562s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
562s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
562s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB]
562s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
562s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
562s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
562s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB]
562s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
562s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
562s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
562s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
563s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
563s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
563s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
563s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
563s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
563s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
563s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
563s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
563s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
563s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
563s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB]
563s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB]
563s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB]
563s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB]
564s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
564s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
564s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB]
564s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
564s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB]
564s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB]
564s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
564s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
564s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
564s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
564s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
564s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
564s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB]
564s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB]
564s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB]
564s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB]
564s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB]
564s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB]
564s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
564s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
564s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
564s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB]
567s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB]
567s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B]
567s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB]
567s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
567s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
567s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB]
567s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB]
570s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
570s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
570s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
570s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
570s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B]
570s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
570s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
570s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB]
571s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB]
571s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB]
571s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB]
571s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB]
571s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB]
571s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB]
571s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB]
571s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB]
571s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
571s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB]
571s Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
572s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
572s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB]
572s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
572s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB]
572s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB]
572s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB]
572s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
572s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
572s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB]
572s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB]
572s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
572s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB]
572s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB]
572s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
572s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
572s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
572s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB]
572s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
573s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB]
573s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB]
573s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
573s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
573s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB]
573s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB]
573s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB]
573s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB]
573s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
573s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB]
573s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB]
573s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB]
573s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB]
573s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
573s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
573s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
574s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB]
574s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
574s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB]
574s Get:199 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB]
574s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB]
574s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB]
575s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB]
576s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB]
583s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB]
583s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB]
583s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB]
583s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB]
584s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomformat all 1.30.0+dfsg-1 [226 kB]
584s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB]
584s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB]
584s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
584s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB]
584s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB]
584s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB]
584s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
585s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
585s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB]
586s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
586s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB]
586s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB]
586s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB]
586s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB]
586s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB]
586s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB]
586s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB]
586s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB]
586s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
586s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB]
586s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB]
586s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
586s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
586s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
586s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
586s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB]
586s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB]
586s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB]
586s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-decontam all 1.22.0+dfsg-2 [210 kB]
587s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB]
587s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-multtest arm64 2.58.0-1 [836 kB]
587s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pixmap all 0.4-12-1 [201 kB]
587s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB]
587s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB]
587s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ade4 arm64 1.7-22-1 [5324 kB]
587s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ape arm64 5.7-1-1 [2879 kB]
587s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB]
587s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB]
588s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB]
588s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB]
588s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB]
588s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB]
588s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-igraph arm64 1.6.0-1 [4329 kB]
588s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-permute all 0.9-7-1 [228 kB]
588s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vegan arm64 2.6-4+dfsg-1 [3088 kB]
588s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-phyloseq all 1.46.0+dfsg-1 [2192 kB]
591s Preconfiguring packages ...
591s Fetched 406 MB in 35s (11.4 MB/s)
591s Selecting previously unselected package libc-dev-bin.
592s (Reading database ... 
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(Reading database ... 75422 files and directories currently installed.)
592s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
592s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
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606s Selecting previously unselected package fonts-lmodern.
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607s Selecting previously unselected package libgfortran5:arm64.
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611s Selecting previously unselected package libdatrie1:arm64.
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612s Selecting previously unselected package libdeflate0:arm64.
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612s Selecting previously unselected package libice6:arm64.
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613s Selecting previously unselected package libicu-dev:arm64.
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615s Selecting previously unselected package libjpeg-turbo8:arm64.
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615s Preparing to unpack .../071-libjpeg8_8c-2ubuntu11_arm64.deb ...
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615s Selecting previously unselected package libjs-bootstrap.
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615s Selecting previously unselected package libjs-popper.js.
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618s Selecting previously unselected package libkpathsea6:arm64.
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618s Selecting previously unselected package liblapack3:arm64.
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619s Selecting previously unselected package liblua5.4-0:arm64.
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619s Selecting previously unselected package libthai-data.
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619s Selecting previously unselected package libthai0:arm64.
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619s Selecting previously unselected package libpango-1.0-0:arm64.
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619s Selecting previously unselected package libpangoft2-1.0-0:arm64.
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620s Selecting previously unselected package libpangocairo-1.0-0:arm64.
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620s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
620s Selecting previously unselected package libpcre2-dev:arm64.
620s Preparing to unpack .../105-libpcre2-dev_10.42-4ubuntu1_arm64.deb ...
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621s Selecting previously unselected package libpkgconf3:arm64.
621s Preparing to unpack .../106-libpkgconf3_1.8.1-2_arm64.deb ...
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621s Selecting previously unselected package zlib1g-dev:arm64.
621s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ...
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621s Selecting previously unselected package libpng-dev:arm64.
621s Preparing to unpack .../108-libpng-dev_1.6.43-1_arm64.deb ...
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621s Selecting previously unselected package libpotrace0:arm64.
621s Preparing to unpack .../109-libpotrace0_1.16-2_arm64.deb ...
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621s Selecting previously unselected package libptexenc1:arm64.
621s Preparing to unpack .../110-libptexenc1_2023.20230311.66589-9_arm64.deb ...
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621s Selecting previously unselected package libreadline-dev:arm64.
621s Preparing to unpack .../111-libreadline-dev_8.2-3_arm64.deb ...
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621s Selecting previously unselected package libsharpyuv0:arm64.
621s Preparing to unpack .../112-libsharpyuv0_1.3.2-0.4_arm64.deb ...
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621s Selecting previously unselected package libsm6:arm64.
621s Preparing to unpack .../113-libsm6_2%3a1.2.3-1build2_arm64.deb ...
621s Unpacking libsm6:arm64 (2:1.2.3-1build2) ...
622s Selecting previously unselected package libsynctex2:arm64.
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622s Selecting previously unselected package libtcl8.6:arm64.
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622s Selecting previously unselected package libteckit0:arm64.
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622s Selecting previously unselected package libtexlua53-5:arm64.
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622s Selecting previously unselected package libjbig0:arm64.
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623s Selecting previously unselected package libwebp7:arm64.
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623s Selecting previously unselected package libtiff6:arm64.
623s Preparing to unpack .../120-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
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623s Selecting previously unselected package libxft2:arm64.
623s Preparing to unpack .../121-libxft2_2.3.6-1_arm64.deb ...
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623s Selecting previously unselected package libxss1:arm64.
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623s Selecting previously unselected package libtk8.6:arm64.
623s Preparing to unpack .../123-libtk8.6_8.6.13-2_arm64.deb ...
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623s Selecting previously unselected package libxpm4:arm64.
624s Preparing to unpack .../126-libxpm4_1%3a3.5.17-1_arm64.deb ...
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624s Selecting previously unselected package libxaw7:arm64.
624s Preparing to unpack .../127-libxaw7_2%3a1.0.14-1_arm64.deb ...
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626s Selecting previously unselected package r-cran-littler.
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627s Selecting previously unselected package node-html5shiv.
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627s Selecting previously unselected package node-normalize.css.
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627s Selecting previously unselected package pandoc-data.
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632s Selecting previously unselected package liblzma-dev:arm64.
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633s Selecting previously unselected package r-bioc-biocgenerics.
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633s Selecting previously unselected package r-cran-base64enc.
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633s Selecting previously unselected package r-cran-rlang.
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634s Selecting previously unselected package r-cran-htmltools.
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634s Selecting previously unselected package r-cran-evaluate.
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634s Selecting previously unselected package r-cran-highr.
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634s Selecting previously unselected package r-cran-yaml.
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634s Selecting previously unselected package libjs-mathjax.
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639s Selecting previously unselected package r-cran-knitr.
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639s Selecting previously unselected package r-cran-cli.
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642s Selecting previously unselected package r-cran-stringi.
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643s Selecting previously unselected package r-cran-vctrs.
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643s Selecting previously unselected package r-cran-stringr.
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643s Selecting previously unselected package r-cran-tinytex.
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644s Selecting previously unselected package r-cran-pkgkitten.
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645s Selecting previously unselected package r-cran-promises.
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645s Selecting previously unselected package r-cran-httpuv.
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645s Selecting previously unselected package r-cran-xtable.
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645s Selecting previously unselected package r-cran-sourcetools.
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645s Selecting previously unselected package r-cran-crayon.
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645s Selecting previously unselected package r-cran-withr.
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646s Selecting previously unselected package r-cran-commonmark.
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646s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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646s Selecting previously unselected package r-cran-shiny.
646s Preparing to unpack .../192-r-cran-shiny_1.8.0+dfsg-1_all.deb ...
646s Unpacking r-cran-shiny (1.8.0+dfsg-1) ...
646s Selecting previously unselected package r-cran-rmarkdown.
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647s Selecting previously unselected package r-cran-bookdown.
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647s Selecting previously unselected package r-cran-biocmanager.
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647s Selecting previously unselected package tex-common.
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647s Selecting previously unselected package t1utils.
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647s Unpacking t1utils (1.41-4build2) ...
647s Selecting previously unselected package texlive-binaries.
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657s Selecting previously unselected package texlive-bibtex-extra.
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671s Selecting previously unselected package r-bioc-biocstyle.
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671s Selecting previously unselected package r-cran-plyr.
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671s Selecting previously unselected package r-cran-lattice.
671s Preparing to unpack .../204-r-cran-lattice_0.22-5-1_arm64.deb ...
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671s Selecting previously unselected package r-cran-matrix.
671s Preparing to unpack .../205-r-cran-matrix_1.6-5-1_arm64.deb ...
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672s Selecting previously unselected package r-bioc-biomformat.
672s Preparing to unpack .../206-r-bioc-biomformat_1.30.0+dfsg-1_all.deb ...
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672s Selecting previously unselected package r-bioc-s4vectors.
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672s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
672s Selecting previously unselected package r-bioc-iranges.
672s Preparing to unpack .../208-r-bioc-iranges_2.36.0-1_arm64.deb ...
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672s Selecting previously unselected package r-bioc-zlibbioc.
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672s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
672s Selecting previously unselected package r-bioc-xvector.
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672s Unpacking r-bioc-xvector (0.42.0-1) ...
672s Selecting previously unselected package r-cran-bitops.
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672s Unpacking r-cran-bitops (1.0-7-1) ...
673s Selecting previously unselected package r-cran-rcurl.
673s Preparing to unpack .../212-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ...
673s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ...
673s Selecting previously unselected package r-bioc-genomeinfodbdata.
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673s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
673s Selecting previously unselected package r-bioc-genomeinfodb.
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674s Selecting previously unselected package r-bioc-biostrings.
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674s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
674s Selecting previously unselected package r-cran-gtable.
674s Preparing to unpack .../216-r-cran-gtable_0.3.4+dfsg-1_all.deb ...
674s Unpacking r-cran-gtable (0.3.4+dfsg-1) ...
675s Selecting previously unselected package r-cran-isoband.
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675s Unpacking r-cran-isoband (0.2.7-1) ...
675s Selecting previously unselected package r-cran-mass.
675s Preparing to unpack .../218-r-cran-mass_7.3-60.0.1-1_arm64.deb ...
675s Unpacking r-cran-mass (7.3-60.0.1-1) ...
675s Selecting previously unselected package r-cran-nlme.
675s Preparing to unpack .../219-r-cran-nlme_3.1.164-1_arm64.deb ...
675s Unpacking r-cran-nlme (3.1.164-1) ...
675s Selecting previously unselected package r-cran-mgcv.
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675s Unpacking r-cran-mgcv (1.9-1-1) ...
675s Selecting previously unselected package r-cran-farver.
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675s Unpacking r-cran-farver (2.1.1-1) ...
676s Selecting previously unselected package r-cran-labeling.
676s Preparing to unpack .../222-r-cran-labeling_0.4.3-1_all.deb ...
676s Unpacking r-cran-labeling (0.4.3-1) ...
676s Selecting previously unselected package r-cran-colorspace.
676s Preparing to unpack .../223-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ...
676s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
676s Selecting previously unselected package r-cran-munsell.
677s Preparing to unpack .../224-r-cran-munsell_0.5.0-2build1_all.deb ...
677s Unpacking r-cran-munsell (0.5.0-2build1) ...
677s Selecting previously unselected package r-cran-rcolorbrewer.
677s Preparing to unpack .../225-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
677s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
677s Selecting previously unselected package r-cran-viridislite.
677s Preparing to unpack .../226-r-cran-viridislite_0.4.2-2_all.deb ...
677s Unpacking r-cran-viridislite (0.4.2-2) ...
677s Selecting previously unselected package r-cran-scales.
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677s Unpacking r-cran-scales (1.3.0-1) ...
677s Selecting previously unselected package r-cran-fansi.
677s Preparing to unpack .../228-r-cran-fansi_1.0.5-1_arm64.deb ...
677s Unpacking r-cran-fansi (1.0.5-1) ...
678s Selecting previously unselected package r-cran-utf8.
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678s Unpacking r-cran-utf8 (1.2.4-1) ...
678s Selecting previously unselected package r-cran-pillar.
678s Preparing to unpack .../230-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
678s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
678s Selecting previously unselected package r-cran-pkgconfig.
678s Preparing to unpack .../231-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
678s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
678s Selecting previously unselected package r-cran-tibble.
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678s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
678s Selecting previously unselected package r-cran-ggplot2.
678s Preparing to unpack .../233-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ...
678s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ...
679s Selecting previously unselected package r-cran-reshape2.
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679s Unpacking r-cran-reshape2 (1.4.4-2build1) ...
679s Selecting previously unselected package r-bioc-decontam.
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679s Unpacking r-bioc-decontam (1.22.0+dfsg-2) ...
679s Selecting previously unselected package r-cran-survival.
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679s Unpacking r-cran-survival (3.5-8-1) ...
680s Selecting previously unselected package r-bioc-multtest.
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680s Selecting previously unselected package r-cran-pixmap.
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680s Selecting previously unselected package r-cran-rcpparmadillo.
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681s Selecting previously unselected package r-cran-ade4.
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682s Selecting previously unselected package r-cran-iterators.
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682s Selecting previously unselected package r-cran-cpp11.
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683s Selecting previously unselected package r-cran-vegan.
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684s Selecting previously unselected package r-bioc-phyloseq.
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684s Setting up libjs-json (0~20221030+~1.0.8-1) ...
684s Setting up javascript-common (11+nmu1) ...
684s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
684s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
684s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
684s Setting up libpaper1:arm64 (1.1.29) ...
685s 
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685s Setting up libdatrie1:arm64 (0.2.13-3) ...
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686s Setting up x11-common (1:7.7+23ubuntu2) ...
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692s Setting up r-base-core (4.3.2-1build1) ...
693s 
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694s Setting up r-cran-crayon (1.5.2-1) ...
694s Setting up r-cran-labeling (0.4.3-1) ...
694s Setting up r-cran-sourcetools (0.1.7-1-1) ...
694s Setting up r-cran-lattice (0.22-5-1) ...
694s Setting up r-cran-nlme (3.1.164-1) ...
694s Setting up r-cran-farver (2.1.1-1) ...
694s Setting up r-cran-viridislite (0.4.2-2) ...
694s Setting up texlive-binaries (2023.20230311.66589-9) ...
694s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
694s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
694s Setting up r-cran-pixmap (0.4-12-1) ...
694s Setting up r-cran-cluster (2.1.6-1) ...
694s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
694s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
694s Setting up r-cran-commonmark (1.9.1-1) ...
694s Setting up r-cran-r6 (2.5.1-1) ...
694s Setting up r-cran-pkgkitten (0.2.3-1) ...
694s Setting up texlive-base (2023.20240207-1) ...
697s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
698s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
699s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
700s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
703s Setting up r-cran-magrittr (2.0.3-1) ...
703s Setting up r-cran-rappdirs (0.3.3-1) ...
703s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
703s Setting up r-cran-littler (0.3.19-1) ...
703s Setting up r-cran-permute (0.9-7-1) ...
703s Setting up r-cran-fs (1.6.3+dfsg-1) ...
703s Setting up r-cran-rcpp (1.0.12-1) ...
703s Setting up r-cran-codetools (0.2-19-1) ...
703s Setting up r-bioc-biocgenerics (0.48.1-2) ...
703s Setting up r-cran-rlang (1.1.3-1) ...
703s Setting up littler (0.3.19-1) ...
703s Setting up r-cran-xfun (0.41+dfsg-1) ...
703s Setting up r-cran-withr (2.5.0-1) ...
703s Setting up r-cran-mime (0.12-1) ...
703s Setting up r-cran-base64enc (0.1-3-3) ...
703s Setting up r-cran-iterators (1.0.14-1) ...
703s Setting up r-cran-digest (0.6.34-1) ...
703s Setting up r-cran-ape (5.7-1-1) ...
703s Setting up r-cran-yaml (2.3.8-1) ...
703s Setting up r-cran-evaluate (0.23-1) ...
703s Setting up r-cran-highr (0.10+dfsg-1) ...
703s Setting up r-cran-foreach (1.5.2-1) ...
703s Setting up r-cran-fansi (1.0.5-1) ...
703s Setting up r-cran-mass (7.3-60.0.1-1) ...
703s Setting up r-cran-data.table (1.14.10+dfsg-1) ...
703s Setting up r-cran-glue (1.7.0-1) ...
703s Setting up r-cran-xtable (1:1.8-4-2) ...
703s Setting up r-cran-cli (3.6.2-1) ...
703s Setting up gfortran (4:13.2.0-7ubuntu1) ...
703s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
703s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
703s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
703s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
703s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
703s Setting up r-cran-bitops (1.0-7-1) ...
703s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
703s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
703s Setting up r-cran-fastmap (1.1.1-1) ...
703s Setting up r-bioc-biobase (2.62.0-1) ...
703s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
703s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
703s Setting up r-cran-sp (1:2.1-2+dfsg-1) ...
703s Setting up r-cran-utf8 (1.2.4-1) ...
703s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
703s Setting up r-cran-stringi (1.8.3-1) ...
703s Setting up texlive-latex-base (2023.20240207-1) ...
703s Setting up r-cran-cpp11 (0.4.7-1) ...
703s Setting up r-cran-plyr (1.8.9-1) ...
703s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
703s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
703s Setting up r-cran-isoband (0.2.7-1) ...
703s Setting up r-cran-gtable (0.3.4+dfsg-1) ...
703s Setting up r-cran-later (1.3.2+dfsg-1) ...
703s Setting up r-cran-matrix (1.6-5-1) ...
703s Setting up r-cran-tinytex (0.49-1) ...
703s Setting up r-cran-knitr (1.45+dfsg-1) ...
703s Setting up r-cran-mgcv (1.9-1-1) ...
703s Setting up g++ (4:13.2.0-7ubuntu1) ...
703s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
703s Setting up r-cran-cachem (1.0.8-1) ...
703s Setting up build-essential (12.10ubuntu1) ...
703s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ...
703s Setting up r-bioc-iranges (2.36.0-1) ...
703s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
703s Setting up r-cran-vctrs (0.6.5-1) ...
703s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
703s Setting up r-cran-ellipsis (0.3.2-2) ...
703s Setting up r-base-dev (4.3.2-1build1) ...
703s Setting up r-cran-stringr (1.5.1-1) ...
703s Setting up r-bioc-biomformat (1.30.0+dfsg-1) ...
703s Setting up r-cran-munsell (0.5.0-2build1) ...
703s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
703s Setting up r-cran-survival (3.5-8-1) ...
703s Setting up r-cran-igraph (1.6.0-1) ...
703s Setting up r-cran-ade4 (1.7-22-1) ...
703s Setting up texlive-bibtex-extra (2023.20240207-1) ...
703s Setting up r-cran-reshape2 (1.4.4-2build1) ...
703s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
703s Setting up r-cran-scales (1.3.0-1) ...
703s Setting up r-cran-memoise (2.0.1-1) ...
703s Setting up r-cran-promises (1.2.1+dfsg-1) ...
703s Setting up r-cran-vegan (2.6-4+dfsg-1) ...
703s Setting up r-cran-htmltools (0.5.7-1) ...
703s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
703s Setting up r-bioc-xvector (0.42.0-1) ...
703s Setting up r-cran-sass (0.4.8+dfsg-1) ...
703s Setting up r-bioc-multtest (2.58.0-1) ...
703s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
703s Setting up r-cran-httpuv (1.6.14+dfsg-1) ...
703s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
703s Setting up r-cran-fontawesome (0.5.2-1) ...
703s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
703s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
703s Setting up r-bioc-decontam (1.22.0+dfsg-2) ...
703s Setting up r-bioc-phyloseq (1.46.0+dfsg-1) ...
703s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
703s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
703s Setting up r-cran-bookdown (0.37+dfsg-1) ...
703s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ...
703s Setting up autopkgtest-satdep (0) ...
703s Processing triggers for man-db (2.12.0-3) ...
707s Processing triggers for install-info (7.1-3) ...
707s Processing triggers for libc-bin (2.39-0ubuntu2) ...
707s Processing triggers for tex-common (6.18) ...
710s Running updmap-sys. This may take some time... done.
710s Running mktexlsr /var/lib/texmf ... done.
710s Building format(s) --all.
846s 	This may take some time... done.
879s (Reading database ... 107142 files and directories currently installed.)
879s Removing autopkgtest-satdep (0) ...
881s autopkgtest [14:55:03]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
881s autopkgtest [14:55:03]: test pkg-r-autopkgtest: [-----------------------
882s Test: Try to load the R library decontam
882s 
882s R version 4.3.2 (2023-10-31) -- "Eye Holes"
882s Copyright (C) 2023 The R Foundation for Statistical Computing
882s Platform: aarch64-unknown-linux-gnu (64-bit)
882s 
882s R is free software and comes with ABSOLUTELY NO WARRANTY.
882s You are welcome to redistribute it under certain conditions.
882s Type 'license()' or 'licence()' for distribution details.
882s 
882s R is a collaborative project with many contributors.
882s Type 'contributors()' for more information and
882s 'citation()' on how to cite R or R packages in publications.
882s 
882s Type 'demo()' for some demos, 'help()' for on-line help, or
882s 'help.start()' for an HTML browser interface to help.
882s Type 'q()' to quit R.
882s 
883s > library('decontam')
890s > 
890s > 
890s Other tests are currently unsupported!
890s They will be progressively added.
891s autopkgtest [14:55:13]: test pkg-r-autopkgtest: -----------------------]
891s pkg-r-autopkgtest    PASS
891s autopkgtest [14:55:13]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
892s autopkgtest [14:55:14]: @@@@@@@@@@@@@@@@@@@@ summary
892s pkg-r-autopkgtest    PASS
910s Creating nova instance adt-noble-arm64-r-bioc-decontam-20240316-144022-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...