0s autopkgtest [17:25:48]: starting date and time: 2024-03-16 17:25:48+0000 0s autopkgtest [17:25:48]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:25:48]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wxsukoh0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-cummerbund --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-15.secgroup --name adt-noble-arm64-r-bioc-cummerbund-20240316-172548-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 86s autopkgtest [17:27:14]: testbed dpkg architecture: arm64 87s autopkgtest [17:27:15]: testbed apt version: 2.7.12 87s autopkgtest [17:27:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 87s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 88s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 88s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 88s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 88s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 88s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 88s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 88s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 88s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 88s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 88s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 88s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 88s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 90s Fetched 9060 kB in 2s (4360 kB/s) 91s Reading package lists... 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Calculating upgrade... 95s The following packages will be REMOVED: 95s libglib2.0-0 libssl3 95s The following NEW packages will be installed: 95s libglib2.0-0t64 libssl3t64 xdg-user-dirs 95s The following packages have been kept back: 95s curl 95s The following packages will be upgraded: 95s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 95s ubuntu-minimal ubuntu-standard 95s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 95s Need to get 4613 kB of archives. 95s After this operation, 211 kB of additional disk space will be used. 95s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 96s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 96s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 96s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 96s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 96s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 96s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 96s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 96s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 96s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 96s Fetched 4613 kB in 1s (5509 kB/s) 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 97s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 97s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 97s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 97s udisks2 depends on libglib2.0-0 (>= 2.77.0). 97s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 97s python3-gi depends on libglib2.0-0 (>= 2.77.0). 97s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 97s netplan.io depends on libglib2.0-0 (>= 2.70.0). 97s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 97s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 97s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 97s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 97s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 97s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 97s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 97s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 97s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 97s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 97s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 97s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 97s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 97s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 97s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 97s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 97s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 97s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 97s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 97s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 97s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 97s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 97s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 97s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 97s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 97s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 97s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 97s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 97s fwupd depends on libglib2.0-0 (>= 2.79.0). 97s bolt depends on libglib2.0-0 (>= 2.56.0). 97s 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 97s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 97s Selecting previously unselected package libglib2.0-0t64:arm64. 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 97s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 97s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 97s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 97s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 97s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 97s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 97s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 97s wget depends on libssl3 (>= 3.0.0). 97s u-boot-tools depends on libssl3 (>= 3.0.0). 97s tnftp depends on libssl3 (>= 3.0.0). 97s tcpdump depends on libssl3 (>= 3.0.0). 97s systemd-resolved depends on libssl3 (>= 3.0.0). 97s systemd depends on libssl3 (>= 3.0.0). 97s sudo depends on libssl3 (>= 3.0.0). 97s sbsigntool depends on libssl3 (>= 3.0.0). 97s rsync depends on libssl3 (>= 3.0.0). 97s python3-cryptography depends on libssl3 (>= 3.0.0). 97s openssh-server depends on libssl3 (>= 3.0.10). 97s openssh-client depends on libssl3 (>= 3.0.10). 97s mtd-utils depends on libssl3 (>= 3.0.0). 97s mokutil depends on libssl3 (>= 3.0.0). 97s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 97s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 97s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 97s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 97s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 97s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 97s libnvme1 depends on libssl3 (>= 3.0.0). 97s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 97s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 97s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 97s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 97s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 97s kmod depends on libssl3 (>= 3.0.0). 97s dhcpcd-base depends on libssl3 (>= 3.0.0). 97s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 97s 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 97s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 97s Selecting previously unselected package libssl3t64:arm64. 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 97s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 97s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 98s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 98s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 98s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 98s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 98s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 98s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 98s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 98s Unpacking ubuntu-minimal (1.536) over (1.535) ... 98s Selecting previously unselected package xdg-user-dirs. 98s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 98s Unpacking xdg-user-dirs (0.18-1) ... 98s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 98s Unpacking ubuntu-standard (1.536) over (1.535) ... 98s Setting up ubuntu-minimal (1.536) ... 98s Setting up xdg-user-dirs (0.18-1) ... 98s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 98s Setting up libtirpc-common (1.3.4+ds-1.1) ... 98s Setting up ubuntu-standard (1.536) ... 98s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 98s No schema files found: doing nothing. 98s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 98s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 98s Setting up openssl (3.0.13-0ubuntu1) ... 98s Setting up readline-common (8.2-3.1) ... 98s Processing triggers for man-db (2.12.0-3) ... 99s Processing triggers for install-info (7.1-3) ... 99s Processing triggers for libc-bin (2.39-0ubuntu2) ... 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 101s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 101s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 102s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 102s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 103s Reading package lists... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 104s Calculating upgrade... 104s The following packages have been kept back: 104s curl 104s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 108s autopkgtest [17:27:36]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 108s autopkgtest [17:27:36]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-cummerbund 110s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-cummerbund 2.44.0-1 (dsc) [2269 B] 110s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-cummerbund 2.44.0-1 (tar) [2446 kB] 110s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-cummerbund 2.44.0-1 (diff) [4376 B] 111s gpgv: Signature made Fri Dec 8 15:15:07 2023 UTC 111s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 111s gpgv: issuer "tille@debian.org" 111s gpgv: Can't check signature: No public key 111s dpkg-source: warning: cannot verify inline signature for ./r-bioc-cummerbund_2.44.0-1.dsc: no acceptable signature found 111s autopkgtest [17:27:39]: testing package r-bioc-cummerbund version 2.44.0-1 112s autopkgtest [17:27:40]: build not needed 113s autopkgtest [17:27:41]: test pkg-r-autopkgtest: preparing testbed 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s Starting pkgProblemResolver with broken count: 0 117s Starting 2 pkgProblemResolver with broken count: 0 117s Done 117s The following additional packages will be installed: 118s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 118s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 118s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 118s fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 118s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 118s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 118s javascript-common libasan8 libatomic1 libblas-dev libblas3 libboost-dev 118s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 118s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 118s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 118s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 118s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 118s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 118s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 118s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 118s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 118s liblapack-dev liblapack3 liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 118s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 118s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 118s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 118s libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0 118s libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 118s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 118s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 118s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 118s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 118s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter 118s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 118s r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 118s r-bioc-bsgenome r-bioc-cummerbund r-bioc-delayedarray r-bioc-ensembldb 118s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 118s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges 118s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib 118s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 118s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 118s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass 118s r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 118s r-cran-bitops r-cran-blob r-cran-bslib r-cran-cachem r-cran-checkmate 118s r-cran-chron r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace 118s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 118s r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest 118s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 118s r-cran-fastcluster r-cran-fastmap r-cran-filelock r-cran-fontawesome 118s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 118s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 118s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms 118s r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 118s r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib 118s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 118s r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle 118s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 118s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 118s r-cran-nnet r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 118s r-cran-plogr r-cran-plyr r-cran-png r-cran-prettyunits r-cran-progress 118s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 118s r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-reshape2 r-cran-restfulr 118s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rsqlite 118s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 118s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 118s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 118s r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun 118s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 118s x11-common xdg-utils zip zlib1g-dev 118s Suggested packages: 118s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 118s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 118s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 118s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 118s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 118s libboost-context1.83-dev libboost-contract1.83-dev 118s libboost-coroutine1.83-dev libboost-date-time1.83-dev 118s libboost-exception1.83-dev libboost-fiber1.83-dev 118s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 118s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 118s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 118s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 118s libboost-numpy1.83-dev libboost-program-options1.83-dev 118s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 118s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 118s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 118s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 118s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 118s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 118s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 118s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 118s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 118s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 118s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base 118s texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra 118s texlive-extra-utils texinfo r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db 118s r-bioc-graph r-bioc-biocstyle r-cran-testthat r-bioc-all r-bioc-affy 118s r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 118s r-bioc-shortread r-cran-batchtools r-cran-mockery r-cran-webmockr 118s r-cran-biocmanager r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 118s r-bioc-delayedmatrixstats r-bioc-ggbio r-bioc-annotationhub r-cran-r.utils 118s r-bioc-edger r-cran-markdown r-bioc-dexseq r-bioc-sparsematrixstats 118s r-bioc-limma r-bioc-rhdf5 r-bioc-snpstats r-cran-roxygen2 r-cran-ff 118s r-cran-covr r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd 118s r-cran-shinyjs r-cran-rmysql r-cran-polyclip r-cran-lubridate r-cran-sp 118s r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-getopt 118s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units 118s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-spelling 118s r-cran-bench r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild 118s r-cran-pkgload r-cran-plm r-cran-zoo 118s Recommended packages: 118s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 118s r-recommended r-doc-html r-cran-testthat r-cran-thematic r-cran-fastmatch 118s r-cran-devtools r-cran-tinytest r-cran-callr r-cran-covr r-cran-mockery 118s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 118s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 118s r-cran-webutils r-cran-r.utils r-cran-xts r-cran-nanotime r-cran-zoo 118s r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg 118s r-cran-testit r-cran-pkgload r-cran-hexbin r-cran-mapproj r-cran-maps 118s r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-sf 118s r-cran-svglite r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown 118s r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate 118s r-cran-rgl r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr 118s r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-lubridate 118s r-cran-doparallel r-cran-foreach r-cran-iterators r-cran-itertools 118s r-cran-future r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-rsconnect 118s r-cran-downlit r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 118s r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-remotes 118s r-cran-renv libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 118s x11-utils x11-xserver-utils 118s The following packages will be REMOVED: 118s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 118s The following NEW packages will be installed: 118s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 118s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 118s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 118s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 118s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 118s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 118s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 118s libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev 118s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 118s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 118s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 118s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 118s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 118s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 118s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 118s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 118s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 118s liblapack-dev liblapack3 liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 118s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 118s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 118s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 118s libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0 118s libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 118s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 118s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 118s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 118s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 118s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter 118s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 118s r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 118s r-bioc-bsgenome r-bioc-cummerbund r-bioc-delayedarray r-bioc-ensembldb 118s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 118s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges 118s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib 118s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 118s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 118s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass 118s r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 118s r-cran-bitops r-cran-blob r-cran-bslib r-cran-cachem r-cran-checkmate 118s r-cran-chron r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace 118s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 118s r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest 118s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 118s r-cran-fastcluster r-cran-fastmap r-cran-filelock r-cran-fontawesome 118s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 118s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 118s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms 118s r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 118s r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib 118s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 118s r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle 118s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 118s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 118s r-cran-nnet r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 118s r-cran-plogr r-cran-plyr r-cran-png r-cran-prettyunits r-cran-progress 118s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 118s r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-reshape2 r-cran-restfulr 118s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rsqlite 118s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 118s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 118s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 118s r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun 118s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 118s x11-common xdg-utils zip zlib1g-dev 118s The following packages will be upgraded: 118s curl 118s 1 upgraded, 303 newly installed, 5 to remove and 0 not upgraded. 118s Need to get 361 MB/361 MB of archives. 118s After this operation, 1162 MB of additional disk space will be used. 118s Get:1 /tmp/autopkgtest.O45ocP/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [776 B] 118s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 118s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 118s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 118s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 118s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 118s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 118s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 118s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 118s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 118s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 118s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 118s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 118s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 118s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 118s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 118s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 119s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 119s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 119s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 119s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 119s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 119s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 119s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 119s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 119s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 119s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 119s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 119s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 119s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 119s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 119s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 119s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 119s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 119s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 119s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 120s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 120s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 120s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 120s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 120s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 120s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 120s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 120s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 120s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 120s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 120s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 120s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 120s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 120s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 120s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 120s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 120s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 120s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 120s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 120s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 120s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 120s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 120s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 120s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 120s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 120s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 120s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 120s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 120s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 120s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 120s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 120s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 120s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 120s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 120s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 121s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 121s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 121s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 121s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 121s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 121s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 121s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 121s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 121s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 121s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 121s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 121s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 121s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 121s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 121s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 121s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 121s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 121s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 121s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 121s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 121s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 121s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 121s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 121s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 121s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 121s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 121s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 121s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 121s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 121s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 121s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 121s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 121s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 121s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 121s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 122s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 122s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 122s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 122s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 122s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 122s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 122s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 122s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 122s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 122s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 122s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 122s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 122s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 122s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 122s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 122s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 122s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 122s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 122s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 122s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 122s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 124s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 124s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 124s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 124s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 124s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 124s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 124s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 125s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 125s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 125s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 125s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 125s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 125s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 125s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 125s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 125s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 125s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 125s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 125s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 125s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 125s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 125s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 125s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 125s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 125s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 125s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 125s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 125s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 125s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 125s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 125s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 125s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 125s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 125s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 125s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 125s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 125s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 125s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 125s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 125s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 126s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 126s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 126s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 126s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 126s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 126s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 126s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 126s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 126s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 126s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 126s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 126s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 126s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 126s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 126s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 126s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 126s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 126s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 126s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 126s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 126s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 126s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 126s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 126s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 126s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 126s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 127s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 127s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 127s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 127s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 127s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 127s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 127s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 127s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 127s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 127s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 127s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 127s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 127s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 127s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 127s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 127s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 127s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 127s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 127s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 127s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 127s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 127s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 127s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 127s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 127s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 127s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 127s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 127s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 128s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 128s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 128s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 128s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 128s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 128s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 128s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 128s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 128s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 128s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 128s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 128s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 128s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nnet arm64 7.3-19-2 [111 kB] 128s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreign arm64 0.8.86-1 [240 kB] 128s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 128s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 128s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 128s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 128s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 128s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 128s Get:242 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 129s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 129s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 129s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 129s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 129s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 129s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 129s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 129s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 129s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 129s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 129s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 129s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 129s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 129s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 129s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 129s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 129s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 129s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 129s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 129s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 129s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 129s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 129s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 129s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 129s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 129s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 129s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltable all 2.4.2-1 [381 kB] 129s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 129s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 129s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-chron arm64 2.3-61-2 [186 kB] 129s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 129s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 129s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 130s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 130s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 130s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-acepack arm64 1.4.2-1 [60.5 kB] 130s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hmisc arm64 5.1-1-1 [3486 kB] 130s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 130s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 130s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 130s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 130s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 130s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 130s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 130s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 130s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 130s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 130s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 130s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 130s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 130s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 130s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 130s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 131s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 131s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 131s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 131s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biovizbase arm64 1.50.0-1 [2665 kB] 131s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 131s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 131s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastcluster arm64 1.2.6-1 [190 kB] 131s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 131s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-cummerbund all 2.44.0-1 [2538 kB] 133s Preconfiguring packages ... 134s Fetched 361 MB in 14s (26.3 MB/s) 134s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 134s wget depends on libpsl5 (>= 0.16.0). 134s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 134s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 134s 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 134s Removing libpsl5:arm64 (0.21.2-1build1) ... 134s Selecting previously unselected package libpsl5t64:arm64. 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 134s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 134s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 134s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 134s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 134s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 134s Selecting previously unselected package libcurl4t64:arm64. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 135s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 135s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 135s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 135s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 135s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 135s 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 135s Removing libpng16-16:arm64 (1.6.43-1) ... 135s Selecting previously unselected package libpng16-16t64:arm64. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 135s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 135s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 135s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 135s parted depends on libreadline8 (>= 6.0). 135s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 135s gpgsm depends on libreadline8 (>= 6.0). 135s gpgconf depends on libreadline8 (>= 6.0). 135s gpg depends on libreadline8 (>= 6.0). 135s gawk depends on libreadline8 (>= 6.0). 135s fdisk depends on libreadline8 (>= 6.0). 135s 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 135s Removing libreadline8:arm64 (8.2-3) ... 135s Selecting previously unselected package libreadline8t64:arm64. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 135s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 135s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 135s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 135s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 135s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 135s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 136s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 136s lsof depends on libtirpc3 (>= 1.0.2). 136s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 136s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 136s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 136s iproute2 depends on libtirpc3 (>= 1.0.2). 136s 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 136s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 136s Selecting previously unselected package libtirpc3t64:arm64. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 136s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 136s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 136s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 136s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 136s Selecting previously unselected package libc-dev-bin. 136s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 136s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 136s Selecting previously unselected package linux-libc-dev:arm64. 136s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 136s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 136s Selecting previously unselected package libcrypt-dev:arm64. 136s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 136s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 136s Selecting previously unselected package libtirpc-dev:arm64. 136s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 136s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 136s Selecting previously unselected package libnsl-dev:arm64. 136s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 136s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 136s Selecting previously unselected package rpcsvc-proto. 136s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 136s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 136s Selecting previously unselected package libc6-dev:arm64. 136s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 136s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 136s Selecting previously unselected package libisl23:arm64. 136s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 136s Unpacking libisl23:arm64 (0.26-3) ... 136s Selecting previously unselected package libmpc3:arm64. 136s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 136s Unpacking libmpc3:arm64 (1.3.1-1) ... 136s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 136s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 136s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 137s Selecting previously unselected package cpp-13. 137s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 137s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 137s Selecting previously unselected package cpp-aarch64-linux-gnu. 137s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 137s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 137s Selecting previously unselected package cpp. 137s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 137s Unpacking cpp (4:13.2.0-7ubuntu1) ... 137s Selecting previously unselected package libcc1-0:arm64. 137s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 137s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 137s Selecting previously unselected package libgomp1:arm64. 137s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 137s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 137s Selecting previously unselected package libitm1:arm64. 137s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 137s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 137s Selecting previously unselected package libatomic1:arm64. 137s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 137s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 137s Selecting previously unselected package libasan8:arm64. 137s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 137s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 137s Selecting previously unselected package liblsan0:arm64. 137s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 137s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 137s Selecting previously unselected package libtsan2:arm64. 137s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 137s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 137s Selecting previously unselected package libubsan1:arm64. 137s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 137s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 137s Selecting previously unselected package libhwasan0:arm64. 138s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libgcc-13-dev:arm64. 138s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 138s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 138s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 138s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 138s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 138s Selecting previously unselected package gcc-13. 138s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 138s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 138s Selecting previously unselected package gcc-aarch64-linux-gnu. 138s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 138s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 138s Selecting previously unselected package gcc. 138s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 138s Unpacking gcc (4:13.2.0-7ubuntu1) ... 138s Selecting previously unselected package libstdc++-13-dev:arm64. 138s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 138s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package g++-13-aarch64-linux-gnu. 140s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package g++-13. 140s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking g++-13 (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package g++-aarch64-linux-gnu. 140s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 140s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 140s Selecting previously unselected package g++. 140s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 140s Unpacking g++ (4:13.2.0-7ubuntu1) ... 140s Selecting previously unselected package build-essential. 140s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 140s Unpacking build-essential (12.10ubuntu1) ... 140s Selecting previously unselected package dctrl-tools. 140s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 140s Unpacking dctrl-tools (2.24-3build2) ... 140s Selecting previously unselected package fonts-dejavu-mono. 140s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 140s Unpacking fonts-dejavu-mono (2.37-8) ... 140s Selecting previously unselected package fonts-dejavu-core. 140s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 141s Unpacking fonts-dejavu-core (2.37-8) ... 141s Selecting previously unselected package fontconfig-config. 141s Preparing to unpack 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fonts-mathjax. 141s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 141s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 141s Selecting previously unselected package libgfortran5:arm64. 141s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 141s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 141s Selecting previously unselected package libgfortran-13-dev:arm64. 141s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 141s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 142s Selecting previously unselected package gfortran-13. 142s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 142s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 142s Selecting previously unselected package gfortran-aarch64-linux-gnu. 142s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 142s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 142s Selecting previously unselected package gfortran. 142s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 142s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 142s Selecting previously unselected package icu-devtools. 142s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_arm64.deb ... 142s Unpacking icu-devtools (74.2-1ubuntu1) ... 142s Selecting previously unselected package javascript-common. 142s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 142s Unpacking javascript-common (11+nmu1) ... 142s Selecting previously unselected package libblas3:arm64. 142s Preparing to unpack .../051-libblas3_3.12.0-3_arm64.deb ... 142s Unpacking libblas3:arm64 (3.12.0-3) ... 142s Selecting previously unselected package libblas-dev:arm64. 142s Preparing to unpack .../052-libblas-dev_3.12.0-3_arm64.deb ... 142s Unpacking libblas-dev:arm64 (3.12.0-3) ... 142s Selecting previously unselected package libboost1.83-dev:arm64. 142s Preparing to unpack .../053-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 142s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 144s Selecting previously unselected package libboost-dev:arm64. 144s Preparing to unpack .../054-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 144s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 144s Selecting previously unselected package libbz2-dev:arm64. 144s Preparing to unpack .../055-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 144s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 144s Selecting previously unselected package libpixman-1-0:arm64. 144s Preparing to unpack .../056-libpixman-1-0_0.42.2-1_arm64.deb ... 144s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 144s Selecting previously unselected package libxcb-render0:arm64. 144s Preparing to unpack .../057-libxcb-render0_1.15-1_arm64.deb ... 144s Unpacking libxcb-render0:arm64 (1.15-1) ... 144s Selecting previously unselected package libxcb-shm0:arm64. 144s Preparing to unpack .../058-libxcb-shm0_1.15-1_arm64.deb ... 144s Unpacking libxcb-shm0:arm64 (1.15-1) ... 144s Selecting previously unselected package libxrender1:arm64. 144s Preparing to unpack .../059-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 144s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 144s Selecting previously unselected package libcairo2:arm64. 144s Preparing to unpack .../060-libcairo2_1.18.0-1_arm64.deb ... 144s Unpacking libcairo2:arm64 (1.18.0-1) ... 144s Selecting previously unselected package libdatrie1:arm64. 144s Preparing to unpack .../061-libdatrie1_0.2.13-3_arm64.deb ... 144s Unpacking libdatrie1:arm64 (0.2.13-3) ... 144s Selecting previously unselected package libdeflate0:arm64. 144s Preparing to unpack .../062-libdeflate0_1.19-1_arm64.deb ... 144s Unpacking libdeflate0:arm64 (1.19-1) ... 145s Selecting previously unselected package libgraphite2-3:arm64. 145s Preparing to unpack .../063-libgraphite2-3_1.3.14-2_arm64.deb ... 145s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 145s Selecting previously unselected package libharfbuzz0b:arm64. 145s Preparing to unpack .../064-libharfbuzz0b_8.3.0-2_arm64.deb ... 145s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 145s Selecting previously unselected package x11-common. 145s Preparing to unpack .../065-x11-common_1%3a7.7+23ubuntu2_all.deb ... 145s Unpacking x11-common (1:7.7+23ubuntu2) ... 145s Selecting previously unselected package libice6:arm64. 145s Preparing to unpack .../066-libice6_2%3a1.0.10-1build2_arm64.deb ... 145s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 145s Selecting previously unselected package libicu-dev:arm64. 145s Preparing to unpack .../067-libicu-dev_74.2-1ubuntu1_arm64.deb ... 145s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 146s Selecting previously unselected package libjpeg-turbo8:arm64. 146s Preparing to unpack .../068-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 146s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 146s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 146s Preparing to unpack .../069-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 146s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 146s Selecting previously unselected package libjpeg8:arm64. 146s Preparing to unpack .../070-libjpeg8_8c-2ubuntu11_arm64.deb ... 146s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 146s Selecting previously unselected package libjpeg8-dev:arm64. 146s Preparing to unpack .../071-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 146s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 146s Selecting previously unselected package libjpeg-dev:arm64. 146s Preparing to unpack .../072-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 146s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 146s Selecting previously unselected package libjs-bootstrap. 146s Preparing to unpack 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(0.12.6+dfsg-1.1) ... 147s Selecting previously unselected package libjs-jquery-ui. 147s Preparing to unpack .../084-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 147s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 147s Selecting previously unselected package libjs-json. 147s Preparing to unpack .../085-libjs-json_0~20221030+~1.0.8-1_all.deb ... 147s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 147s Selecting previously unselected package libjs-prettify. 147s Preparing to unpack .../086-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 147s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 147s Selecting previously unselected package liblapack3:arm64. 147s Preparing to unpack .../087-liblapack3_3.12.0-3_arm64.deb ... 147s Unpacking liblapack3:arm64 (3.12.0-3) ... 147s Selecting previously unselected package liblapack-dev:arm64. 147s Preparing to unpack .../088-liblapack-dev_3.12.0-3_arm64.deb ... 147s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 147s Selecting previously unselected package liblerc4:arm64. 147s Preparing to unpack .../089-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 147s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 147s Selecting previously unselected package liblua5.4-0:arm64. 147s Preparing to unpack .../090-liblua5.4-0_5.4.6-3_arm64.deb ... 147s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 147s Selecting previously unselected package libncurses-dev:arm64. 147s Preparing to unpack .../091-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 147s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 147s Selecting previously unselected package libthai-data. 147s Preparing to unpack .../092-libthai-data_0.1.29-2_all.deb ... 147s Unpacking libthai-data (0.1.29-2) ... 147s Selecting previously unselected package libthai0:arm64. 147s Preparing to unpack .../093-libthai0_0.1.29-2_arm64.deb ... 147s Unpacking libthai0:arm64 (0.1.29-2) ... 147s Selecting previously unselected package libpango-1.0-0:arm64. 147s Preparing to unpack .../094-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 147s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 148s Selecting previously unselected package libpangoft2-1.0-0:arm64. 148s Preparing to unpack .../095-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 148s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 148s Selecting previously unselected package libpangocairo-1.0-0:arm64. 148s Preparing to unpack .../096-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 148s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 148s Selecting previously unselected package libpaper1:arm64. 148s Preparing to unpack .../097-libpaper1_1.1.29_arm64.deb ... 148s Unpacking libpaper1:arm64 (1.1.29) ... 148s Selecting previously unselected package libpaper-utils. 148s Preparing to unpack .../098-libpaper-utils_1.1.29_arm64.deb ... 148s Unpacking libpaper-utils (1.1.29) ... 148s Selecting previously unselected package libpcre2-16-0:arm64. 148s Preparing to unpack .../099-libpcre2-16-0_10.42-4ubuntu1_arm64.deb 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zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 148s Selecting previously unselected package libpng-dev:arm64. 148s Preparing to unpack .../105-libpng-dev_1.6.43-3_arm64.deb ... 148s Unpacking libpng-dev:arm64 (1.6.43-3) ... 148s Selecting previously unselected package libreadline-dev:arm64. 148s Preparing to unpack .../106-libreadline-dev_8.2-3.1_arm64.deb ... 148s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 148s Selecting previously unselected package libsharpyuv0:arm64. 148s Preparing to unpack .../107-libsharpyuv0_1.3.2-0.4_arm64.deb ... 148s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 148s Selecting previously unselected package libsm6:arm64. 148s Preparing to unpack .../108-libsm6_2%3a1.2.3-1build2_arm64.deb ... 148s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 148s Selecting previously unselected package libtcl8.6:arm64. 148s Preparing to unpack .../109-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 148s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 148s Selecting previously unselected package libjbig0:arm64. 148s Preparing to unpack .../110-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 148s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 148s Selecting previously unselected package libwebp7:arm64. 149s Preparing to unpack .../111-libwebp7_1.3.2-0.4_arm64.deb ... 149s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 149s Selecting previously unselected package libtiff6:arm64. 149s Preparing to unpack .../112-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 149s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 149s Selecting previously unselected package libxft2:arm64. 149s Preparing to unpack .../113-libxft2_2.3.6-1_arm64.deb ... 149s Unpacking libxft2:arm64 (2.3.6-1) ... 149s Selecting previously unselected package libxss1:arm64. 149s Preparing to unpack .../114-libxss1_1%3a1.2.3-1build2_arm64.deb ... 149s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 149s Selecting previously unselected package libtk8.6:arm64. 149s Preparing to unpack .../115-libtk8.6_8.6.13-2_arm64.deb ... 149s Unpacking libtk8.6:arm64 (8.6.13-2) ... 149s Selecting previously unselected package libxt6t64:arm64. 149s Preparing to unpack .../116-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 149s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 149s Selecting previously unselected package zip. 149s Preparing to unpack .../117-zip_3.0-13_arm64.deb ... 149s Unpacking zip (3.0-13) ... 149s Selecting previously unselected package unzip. 149s Preparing to unpack .../118-unzip_6.0-28ubuntu3_arm64.deb ... 149s Unpacking unzip (6.0-28ubuntu3) ... 149s Selecting previously unselected package xdg-utils. 149s Preparing to unpack .../119-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 149s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 149s Selecting previously unselected package r-base-core. 149s Preparing to unpack .../120-r-base-core_4.3.3-2build1_arm64.deb ... 149s Unpacking r-base-core (4.3.3-2build1) ... 149s Selecting previously unselected package r-cran-littler. 149s Preparing to unpack .../121-r-cran-littler_0.3.19-1_arm64.deb ... 149s Unpacking r-cran-littler (0.3.19-1) ... 149s Selecting previously unselected package littler. 149s Preparing to unpack .../122-littler_0.3.19-1_all.deb ... 149s Unpacking littler (0.3.19-1) ... 149s Selecting previously unselected package node-bootstrap-sass. 149s Preparing to unpack .../123-node-bootstrap-sass_3.4.3-2_all.deb ... 149s Unpacking node-bootstrap-sass (3.4.3-2) ... 150s Selecting previously unselected package node-html5shiv. 150s Preparing to unpack .../124-node-html5shiv_3.7.3+dfsg-5_all.deb ... 150s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 150s Selecting previously unselected package node-normalize.css. 150s Preparing to unpack .../125-node-normalize.css_8.0.1-5_all.deb ... 150s Unpacking node-normalize.css (8.0.1-5) ... 150s Selecting previously unselected package pandoc-data. 150s Preparing to unpack .../126-pandoc-data_3.1.3-1_all.deb ... 150s Unpacking pandoc-data (3.1.3-1) ... 150s Selecting previously unselected package pandoc. 150s Preparing to unpack .../127-pandoc_3.1.3+ds-2_arm64.deb ... 150s Unpacking pandoc (3.1.3+ds-2) ... 151s Selecting previously unselected package pkgconf-bin. 151s Preparing to unpack .../128-pkgconf-bin_1.8.1-2_arm64.deb ... 151s Unpacking pkgconf-bin (1.8.1-2) ... 151s Selecting previously unselected package pkgconf:arm64. 151s Preparing to unpack .../129-pkgconf_1.8.1-2_arm64.deb ... 151s Unpacking pkgconf:arm64 (1.8.1-2) ... 151s Selecting previously unselected package pkg-config:arm64. 151s Preparing to unpack .../130-pkg-config_1.8.1-2_arm64.deb ... 151s Unpacking pkg-config:arm64 (1.8.1-2) ... 151s Selecting previously unselected package liblzma-dev:arm64. 151s Preparing to unpack .../131-liblzma-dev_5.4.5-0.3_arm64.deb ... 151s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 151s Selecting previously unselected package r-base-dev. 151s Preparing to unpack .../132-r-base-dev_4.3.3-2build1_all.deb ... 151s Unpacking r-base-dev (4.3.3-2build1) ... 151s Selecting previously unselected package pkg-r-autopkgtest. 151s Preparing to unpack .../133-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 151s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 151s Selecting previously unselected package r-bioc-biocgenerics. 151s Preparing to unpack .../134-r-bioc-biocgenerics_0.48.1-2_all.deb ... 151s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 151s Selecting previously unselected package r-bioc-biobase. 151s Preparing to unpack .../135-r-bioc-biobase_2.62.0-1_arm64.deb ... 151s Unpacking r-bioc-biobase (2.62.0-1) ... 151s Selecting previously unselected package r-bioc-s4vectors. 151s Preparing to unpack .../136-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 151s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 151s Selecting previously unselected package r-bioc-iranges. 151s Preparing to unpack .../137-r-bioc-iranges_2.36.0-1_arm64.deb ... 151s Unpacking r-bioc-iranges (2.36.0-1) ... 151s Selecting previously unselected package r-cran-dbi. 151s Preparing to unpack .../138-r-cran-dbi_1.2.2-1_all.deb ... 151s Unpacking r-cran-dbi (1.2.2-1) ... 151s Selecting previously unselected package r-cran-bit. 151s Preparing to unpack .../139-r-cran-bit_4.0.5-1_arm64.deb ... 151s Unpacking r-cran-bit (4.0.5-1) ... 152s Selecting previously unselected package r-cran-bit64. 152s Preparing to unpack .../140-r-cran-bit64_4.0.5-1_arm64.deb ... 152s Unpacking r-cran-bit64 (4.0.5-1) ... 152s Selecting previously unselected package r-cran-rlang. 152s Preparing to unpack .../141-r-cran-rlang_1.1.3-1_arm64.deb ... 152s Unpacking r-cran-rlang (1.1.3-1) ... 152s Selecting previously unselected package r-cran-cli. 152s Preparing to unpack .../142-r-cran-cli_3.6.2-1_arm64.deb ... 152s Unpacking r-cran-cli (3.6.2-1) ... 152s Selecting previously unselected package r-cran-glue. 152s Preparing to unpack .../143-r-cran-glue_1.7.0-1_arm64.deb ... 152s Unpacking r-cran-glue (1.7.0-1) ... 152s Selecting previously unselected package r-cran-lifecycle. 152s Preparing to unpack .../144-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 152s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 152s Selecting previously unselected package r-cran-vctrs. 152s Preparing to unpack .../145-r-cran-vctrs_0.6.5-1_arm64.deb ... 152s Unpacking r-cran-vctrs (0.6.5-1) ... 152s Selecting previously unselected package r-cran-blob. 152s Preparing to unpack .../146-r-cran-blob_1.2.4-1_all.deb ... 152s Unpacking r-cran-blob (1.2.4-1) ... 152s Selecting previously unselected package r-cran-fastmap. 152s Preparing to unpack .../147-r-cran-fastmap_1.1.1-1_arm64.deb ... 152s Unpacking r-cran-fastmap (1.1.1-1) ... 152s Selecting previously unselected package r-cran-cachem. 152s Preparing to unpack .../148-r-cran-cachem_1.0.8-1_arm64.deb ... 152s Unpacking r-cran-cachem (1.0.8-1) ... 152s Selecting previously unselected package r-cran-memoise. 152s Preparing to unpack .../149-r-cran-memoise_2.0.1-1_all.deb ... 152s Unpacking r-cran-memoise (2.0.1-1) ... 152s Selecting previously unselected package r-cran-pkgconfig. 152s Preparing to unpack .../150-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 152s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 152s Selecting previously unselected package r-cran-plogr. 152s Preparing to unpack .../151-r-cran-plogr_0.2.0-3build1_all.deb ... 152s Unpacking r-cran-plogr (0.2.0-3build1) ... 152s Selecting previously unselected package r-cran-cpp11. 152s Preparing to unpack .../152-r-cran-cpp11_0.4.7-1_all.deb ... 152s Unpacking r-cran-cpp11 (0.4.7-1) ... 152s Selecting previously unselected package r-cran-rsqlite. 152s Preparing to unpack .../153-r-cran-rsqlite_2.3.4-1_arm64.deb ... 152s Unpacking r-cran-rsqlite (2.3.4-1) ... 152s Selecting previously unselected package r-cran-curl. 152s Preparing to unpack .../154-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 152s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 152s Selecting previously unselected package r-cran-jsonlite. 152s Preparing to unpack .../155-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 152s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 153s Selecting previously unselected package r-cran-mime. 153s Preparing to unpack .../156-r-cran-mime_0.12-1_arm64.deb ... 153s Unpacking r-cran-mime (0.12-1) ... 153s Selecting previously unselected package r-cran-sys. 153s Preparing to unpack .../157-r-cran-sys_3.4.2-1_arm64.deb ... 153s Unpacking r-cran-sys (3.4.2-1) ... 153s Selecting previously unselected package r-cran-askpass. 153s Preparing to unpack .../158-r-cran-askpass_1.2.0-1_arm64.deb ... 153s Unpacking r-cran-askpass (1.2.0-1) ... 153s Selecting previously unselected package r-cran-openssl. 153s Preparing to unpack .../159-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 153s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 153s Selecting previously unselected package r-cran-r6. 153s Preparing to unpack .../160-r-cran-r6_2.5.1-1_all.deb ... 153s Unpacking r-cran-r6 (2.5.1-1) ... 153s Selecting previously unselected package r-cran-httr. 153s Preparing to unpack .../161-r-cran-httr_1.4.7+dfsg-1_all.deb ... 153s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 153s Selecting previously unselected package r-cran-png. 153s Preparing to unpack .../162-r-cran-png_0.1-8-1_arm64.deb ... 153s Unpacking r-cran-png (0.1-8-1) ... 153s Selecting previously unselected package r-bioc-zlibbioc. 153s Preparing to unpack .../163-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 153s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 153s Selecting previously unselected package r-bioc-xvector. 153s Preparing to unpack .../164-r-bioc-xvector_0.42.0-1_arm64.deb ... 153s Unpacking r-bioc-xvector (0.42.0-1) ... 153s Selecting previously unselected package r-cran-bitops. 153s Preparing to unpack .../165-r-cran-bitops_1.0-7-1_arm64.deb ... 153s Unpacking r-cran-bitops (1.0-7-1) ... 153s Selecting previously unselected package r-cran-rcurl. 153s Preparing to unpack .../166-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 153s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 153s Selecting previously unselected package r-bioc-genomeinfodbdata. 153s Preparing to unpack .../167-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 153s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 153s Selecting previously unselected package r-bioc-genomeinfodb. 153s Preparing to unpack .../168-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 153s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 153s Selecting previously unselected package r-cran-crayon. 153s Preparing to unpack .../169-r-cran-crayon_1.5.2-1_all.deb ... 153s Unpacking r-cran-crayon (1.5.2-1) ... 153s Selecting previously unselected package r-bioc-biostrings. 153s Preparing to unpack .../170-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 153s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 153s Selecting previously unselected package r-bioc-keggrest. 153s Preparing to unpack .../171-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 153s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 153s Selecting previously unselected package r-bioc-annotationdbi. 153s Preparing to unpack .../172-r-bioc-annotationdbi_1.64.1-1_all.deb ... 153s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 153s Selecting previously unselected package r-bioc-genomicranges. 153s Preparing to unpack .../173-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 153s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 154s Selecting previously unselected package r-cran-lazyeval. 154s Preparing to unpack .../174-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 154s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 154s Selecting previously unselected package r-bioc-annotationfilter. 154s Preparing to unpack .../175-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 154s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 154s Selecting previously unselected package r-cran-generics. 154s Preparing to unpack .../176-r-cran-generics_0.1.3-1_all.deb ... 154s Unpacking r-cran-generics (0.1.3-1) ... 154s Selecting previously unselected package r-cran-magrittr. 154s Preparing to unpack .../177-r-cran-magrittr_2.0.3-1_arm64.deb ... 154s Unpacking r-cran-magrittr (2.0.3-1) ... 154s Selecting previously unselected package r-cran-fansi. 154s Preparing to unpack .../178-r-cran-fansi_1.0.5-1_arm64.deb ... 154s Unpacking r-cran-fansi (1.0.5-1) ... 154s Selecting previously unselected package r-cran-utf8. 154s Preparing to unpack .../179-r-cran-utf8_1.2.4-1_arm64.deb ... 154s Unpacking r-cran-utf8 (1.2.4-1) ... 154s Selecting previously unselected package r-cran-pillar. 154s Preparing to unpack .../180-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 154s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 154s Selecting previously unselected package r-cran-tibble. 154s Preparing to unpack .../181-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 154s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 154s Selecting previously unselected package r-cran-withr. 154s Preparing to unpack .../182-r-cran-withr_2.5.0-1_all.deb ... 154s Unpacking r-cran-withr (2.5.0-1) ... 154s Selecting previously unselected package r-cran-tidyselect. 154s Preparing to unpack .../183-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 154s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 154s Selecting previously unselected package r-cran-dplyr. 154s Preparing to unpack .../184-r-cran-dplyr_1.1.4-1_arm64.deb ... 154s Unpacking r-cran-dplyr (1.1.4-1) ... 155s Selecting previously unselected package r-cran-purrr. 155s Preparing to unpack .../185-r-cran-purrr_1.0.2-1_arm64.deb ... 155s Unpacking r-cran-purrr (1.0.2-1) ... 155s Selecting previously unselected package r-cran-stringi. 155s Preparing to unpack .../186-r-cran-stringi_1.8.3-1_arm64.deb ... 155s Unpacking r-cran-stringi (1.8.3-1) ... 155s Selecting previously unselected package r-cran-stringr. 155s Preparing to unpack .../187-r-cran-stringr_1.5.1-1_all.deb ... 155s Unpacking r-cran-stringr (1.5.1-1) ... 155s Selecting previously unselected package r-cran-tidyr. 155s Preparing to unpack .../188-r-cran-tidyr_1.3.1-1_arm64.deb ... 155s Unpacking r-cran-tidyr (1.3.1-1) ... 155s Selecting previously unselected package r-cran-dbplyr. 155s Preparing to unpack .../189-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 155s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 155s Selecting previously unselected package r-cran-filelock. 155s Preparing to unpack .../190-r-cran-filelock_1.0.3-1_arm64.deb ... 155s Unpacking r-cran-filelock (1.0.3-1) ... 155s Selecting previously unselected package r-bioc-biocfilecache. 155s Preparing to unpack .../191-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 155s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 155s Selecting previously unselected package r-bioc-biocio. 155s Preparing to unpack .../192-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 155s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 155s Selecting previously unselected package r-cran-formatr. 155s Preparing to unpack .../193-r-cran-formatr_1.14-1_all.deb ... 155s Unpacking r-cran-formatr (1.14-1) ... 155s Selecting previously unselected package r-cran-lambda.r. 155s Preparing to unpack .../194-r-cran-lambda.r_1.2.4-2build1_all.deb ... 155s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 155s Selecting previously unselected package r-cran-futile.options. 155s Preparing to unpack .../195-r-cran-futile.options_1.0.1-3build1_all.deb ... 155s Unpacking r-cran-futile.options (1.0.1-3build1) ... 155s Selecting previously unselected package r-cran-futile.logger. 155s Preparing to unpack .../196-r-cran-futile.logger_1.4.3-4build1_all.deb ... 155s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 155s Selecting previously unselected package r-cran-snow. 155s Preparing to unpack .../197-r-cran-snow_1%3a0.4.4-2_all.deb ... 155s Unpacking r-cran-snow (1:0.4.4-2) ... 155s Selecting previously unselected package r-cran-codetools. 155s Preparing to unpack .../198-r-cran-codetools_0.2-19-1_all.deb ... 155s Unpacking r-cran-codetools (0.2-19-1) ... 155s Selecting previously unselected package r-cran-bh. 155s Preparing to unpack .../199-r-cran-bh_1.84.0-1_all.deb ... 155s Unpacking r-cran-bh (1.84.0-1) ... 155s Selecting previously unselected package r-bioc-biocparallel. 155s Preparing to unpack .../200-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 155s Unpacking r-bioc-biocparallel (1.36.0-1) ... 155s Selecting previously unselected package r-cran-xml. 156s Preparing to unpack .../201-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 156s Unpacking r-cran-xml (3.99-0.16.1-1) ... 156s Selecting previously unselected package r-cran-hms. 156s Preparing to unpack .../202-r-cran-hms_1.1.3-1_all.deb ... 156s Unpacking r-cran-hms (1.1.3-1) ... 156s Selecting previously unselected package r-cran-prettyunits. 156s Preparing to unpack .../203-r-cran-prettyunits_1.2.0-1_all.deb ... 156s Unpacking r-cran-prettyunits (1.2.0-1) ... 156s Selecting previously unselected package r-cran-progress. 156s Preparing to unpack .../204-r-cran-progress_1.2.3-1_all.deb ... 156s Unpacking r-cran-progress (1.2.3-1) ... 156s Selecting previously unselected package r-cran-digest. 156s Preparing to unpack .../205-r-cran-digest_0.6.34-1_arm64.deb ... 156s Unpacking r-cran-digest (0.6.34-1) ... 156s Selecting previously unselected package r-cran-rappdirs. 156s Preparing to unpack .../206-r-cran-rappdirs_0.3.3-1_arm64.deb ... 156s Unpacking r-cran-rappdirs (0.3.3-1) ... 156s Selecting previously unselected package r-cran-xml2. 156s Preparing to unpack .../207-r-cran-xml2_1.3.6-1_arm64.deb ... 156s Unpacking r-cran-xml2 (1.3.6-1) ... 156s Selecting previously unselected package r-bioc-biomart. 156s Preparing to unpack .../208-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 156s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 156s Selecting previously unselected package r-cran-farver. 156s Preparing to unpack .../209-r-cran-farver_2.1.1-1_arm64.deb ... 156s Unpacking r-cran-farver (2.1.1-1) ... 156s Selecting previously unselected package r-cran-labeling. 156s Preparing to unpack .../210-r-cran-labeling_0.4.3-1_all.deb ... 156s Unpacking r-cran-labeling (0.4.3-1) ... 156s Selecting previously unselected package r-cran-colorspace. 156s Preparing to unpack .../211-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 156s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 156s Selecting previously unselected package r-cran-munsell. 156s Preparing to unpack .../212-r-cran-munsell_0.5.0-2build1_all.deb ... 156s Unpacking r-cran-munsell (0.5.0-2build1) ... 156s Selecting previously unselected package r-cran-rcolorbrewer. 156s Preparing to unpack .../213-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 156s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 156s Selecting previously unselected package r-cran-viridislite. 156s Preparing to unpack .../214-r-cran-viridislite_0.4.2-2_all.deb ... 156s Unpacking r-cran-viridislite (0.4.2-2) ... 156s Selecting previously unselected package r-cran-scales. 156s Preparing to unpack .../215-r-cran-scales_1.3.0-1_all.deb ... 156s Unpacking r-cran-scales (1.3.0-1) ... 157s Selecting previously unselected package r-cran-gtable. 157s Preparing to unpack .../216-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 157s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 157s Selecting previously unselected package r-cran-isoband. 157s Preparing to unpack .../217-r-cran-isoband_0.2.7-1_arm64.deb ... 157s Unpacking r-cran-isoband (0.2.7-1) ... 157s Selecting previously unselected package r-cran-mass. 157s Preparing to unpack .../218-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 157s Unpacking r-cran-mass (7.3-60.0.1-1) ... 157s Selecting previously unselected package r-cran-lattice. 157s Preparing to unpack .../219-r-cran-lattice_0.22-5-1_arm64.deb ... 157s Unpacking r-cran-lattice (0.22-5-1) ... 157s Selecting previously unselected package r-cran-nlme. 157s Preparing to unpack .../220-r-cran-nlme_3.1.164-1_arm64.deb ... 157s Unpacking r-cran-nlme (3.1.164-1) ... 157s Selecting previously unselected package r-cran-matrix. 157s Preparing to unpack .../221-r-cran-matrix_1.6-5-1_arm64.deb ... 157s Unpacking r-cran-matrix (1.6-5-1) ... 157s Selecting previously unselected package r-cran-mgcv. 157s Preparing to unpack .../222-r-cran-mgcv_1.9-1-1_arm64.deb ... 157s Unpacking r-cran-mgcv (1.9-1-1) ... 157s Selecting previously unselected package r-cran-ggplot2. 157s Preparing to unpack .../223-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 157s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 157s Selecting previously unselected package r-cran-cluster. 157s Preparing to unpack .../224-r-cran-cluster_2.1.6-1_arm64.deb ... 157s Unpacking r-cran-cluster (2.1.6-1) ... 157s Selecting previously unselected package r-cran-survival. 157s Preparing to unpack .../225-r-cran-survival_3.5-8-1_arm64.deb ... 157s Unpacking r-cran-survival (3.5-8-1) ... 157s Selecting previously unselected package r-cran-rpart. 157s Preparing to unpack .../226-r-cran-rpart_4.1.23-1_arm64.deb ... 157s Unpacking r-cran-rpart (4.1.23-1) ... 157s Selecting previously unselected package r-cran-nnet. 157s Preparing to unpack .../227-r-cran-nnet_7.3-19-2_arm64.deb ... 157s Unpacking r-cran-nnet (7.3-19-2) ... 157s Selecting previously unselected package r-cran-foreign. 157s Preparing to unpack .../228-r-cran-foreign_0.8.86-1_arm64.deb ... 157s Unpacking r-cran-foreign (0.8.86-1) ... 157s Selecting previously unselected package r-cran-gridextra. 157s Preparing to unpack .../229-r-cran-gridextra_2.3-3build1_all.deb ... 157s Unpacking r-cran-gridextra (2.3-3build1) ... 158s Selecting previously unselected package r-cran-data.table. 158s Preparing to unpack .../230-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 158s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 158s Selecting previously unselected package r-cran-evaluate. 158s Preparing to unpack .../231-r-cran-evaluate_0.23-1_all.deb ... 158s Unpacking r-cran-evaluate (0.23-1) ... 158s Selecting previously unselected package r-cran-xfun. 158s Preparing to unpack .../232-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 158s Unpacking r-cran-xfun (0.41+dfsg-1) ... 158s Selecting previously unselected package r-cran-highr. 158s Preparing to unpack .../233-r-cran-highr_0.10+dfsg-1_all.deb ... 158s Unpacking r-cran-highr (0.10+dfsg-1) ... 158s Selecting previously unselected package r-cran-yaml. 158s Preparing to unpack .../234-r-cran-yaml_2.3.8-1_arm64.deb ... 158s Unpacking r-cran-yaml (2.3.8-1) ... 158s Selecting previously unselected package libjs-mathjax. 158s Preparing to unpack .../235-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 158s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 158s Selecting previously unselected package r-cran-knitr. 159s Preparing to unpack .../236-r-cran-knitr_1.45+dfsg-1_all.deb ... 159s Unpacking r-cran-knitr (1.45+dfsg-1) ... 159s Selecting previously unselected package r-cran-backports. 159s Preparing to unpack .../237-r-cran-backports_1.4.1-1_arm64.deb ... 159s Unpacking r-cran-backports (1.4.1-1) ... 159s Selecting previously unselected package r-cran-checkmate. 159s Preparing to unpack .../238-r-cran-checkmate_2.3.1-1_arm64.deb ... 159s Unpacking r-cran-checkmate (2.3.1-1) ... 159s Selecting previously unselected package r-cran-base64enc. 159s Preparing to unpack .../239-r-cran-base64enc_0.1-3-3_arm64.deb ... 159s Unpacking r-cran-base64enc (0.1-3-3) ... 159s Selecting previously unselected package r-cran-ellipsis. 159s Preparing to unpack .../240-r-cran-ellipsis_0.3.2-2_arm64.deb ... 159s Unpacking r-cran-ellipsis (0.3.2-2) ... 159s Selecting previously unselected package r-cran-htmltools. 159s Preparing to unpack .../241-r-cran-htmltools_0.5.7-1_arm64.deb ... 159s Unpacking r-cran-htmltools (0.5.7-1) ... 159s Selecting previously unselected package r-cran-jquerylib. 159s Preparing to unpack .../242-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 159s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 159s Selecting previously unselected package r-cran-fs. 159s Preparing to unpack .../243-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 159s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 159s Selecting previously unselected package r-cran-sass. 159s Preparing to unpack .../244-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 159s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 159s Selecting previously unselected package r-cran-bslib. 159s Preparing to unpack .../245-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 159s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 159s Selecting previously unselected package r-cran-fontawesome. 159s Preparing to unpack .../246-r-cran-fontawesome_0.5.2-1_all.deb ... 159s Unpacking r-cran-fontawesome (0.5.2-1) ... 159s Selecting previously unselected package r-cran-tinytex. 159s Preparing to unpack .../247-r-cran-tinytex_0.49-1_all.deb ... 159s Unpacking r-cran-tinytex (0.49-1) ... 159s Selecting previously unselected package libjs-modernizr. 159s Preparing to unpack .../248-libjs-modernizr_2.6.2+ds1-5_all.deb ... 159s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 159s Selecting previously unselected package r-cran-pkgkitten. 159s Preparing to unpack .../249-r-cran-pkgkitten_0.2.3-1_all.deb ... 159s Unpacking r-cran-pkgkitten (0.2.3-1) ... 159s Selecting previously unselected package r-cran-rcpp. 159s Preparing to unpack .../250-r-cran-rcpp_1.0.12-1_arm64.deb ... 159s Unpacking r-cran-rcpp (1.0.12-1) ... 160s Selecting previously unselected package r-cran-later. 160s Preparing to unpack .../251-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 160s Unpacking r-cran-later (1.3.2+dfsg-1) ... 160s Selecting previously unselected package r-cran-promises. 160s Preparing to unpack .../252-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 160s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 160s Selecting previously unselected package r-cran-httpuv. 160s Preparing to unpack .../253-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 160s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 160s Selecting previously unselected package r-cran-xtable. 160s Preparing to unpack .../254-r-cran-xtable_1%3a1.8-4-2_all.deb ... 160s Unpacking r-cran-xtable (1:1.8-4-2) ... 160s Selecting previously unselected package r-cran-sourcetools. 160s Preparing to unpack .../255-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 160s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 160s Selecting previously unselected package r-cran-commonmark. 160s Preparing to unpack .../256-r-cran-commonmark_1.9.1-1_arm64.deb ... 160s Unpacking r-cran-commonmark (1.9.1-1) ... 160s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 160s Preparing to unpack .../257-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 160s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 160s Selecting previously unselected package r-cran-shiny. 160s Preparing to unpack .../258-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 160s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 160s Selecting previously unselected package r-cran-rmarkdown. 160s Preparing to unpack .../259-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 160s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 160s Selecting previously unselected package r-cran-htmlwidgets. 160s Preparing to unpack .../260-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 160s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 160s Selecting previously unselected package r-cran-rstudioapi. 160s Preparing to unpack .../261-r-cran-rstudioapi_0.15.0-1_all.deb ... 160s Unpacking r-cran-rstudioapi (0.15.0-1) ... 160s Selecting previously unselected package r-cran-htmltable. 160s Preparing to unpack .../262-r-cran-htmltable_2.4.2-1_all.deb ... 160s Unpacking r-cran-htmltable (2.4.2-1) ... 160s Selecting previously unselected package r-cran-viridis. 160s Preparing to unpack .../263-r-cran-viridis_0.6.5-1_all.deb ... 160s Unpacking r-cran-viridis (0.6.5-1) ... 161s Selecting previously unselected package r-cran-formula. 161s Preparing to unpack .../264-r-cran-formula_1.2-5-1_all.deb ... 161s Unpacking r-cran-formula (1.2-5-1) ... 161s Selecting previously unselected package r-cran-chron. 161s Preparing to unpack .../265-r-cran-chron_2.3-61-2_arm64.deb ... 161s Unpacking r-cran-chron (2.3-61-2) ... 161s Selecting previously unselected package r-cran-jpeg. 161s Preparing to unpack .../266-r-cran-jpeg_0.1-10-1_arm64.deb ... 161s Unpacking r-cran-jpeg (0.1-10-1) ... 161s Selecting previously unselected package r-cran-deldir. 161s Preparing to unpack .../267-r-cran-deldir_2.0-4-1_arm64.deb ... 161s Unpacking r-cran-deldir (2.0-4-1) ... 161s Selecting previously unselected package r-cran-rcppeigen. 161s Preparing to unpack .../268-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 161s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 161s Selecting previously unselected package r-cran-interp. 161s Preparing to unpack .../269-r-cran-interp_1.1-6-1_arm64.deb ... 161s Unpacking r-cran-interp (1.1-6-1) ... 161s Selecting previously unselected package r-cran-latticeextra. 161s Preparing to unpack .../270-r-cran-latticeextra_0.6-30-1_all.deb ... 161s Unpacking r-cran-latticeextra (0.6-30-1) ... 161s Selecting previously unselected package r-cran-acepack. 161s Preparing to unpack .../271-r-cran-acepack_1.4.2-1_arm64.deb ... 161s Unpacking r-cran-acepack (1.4.2-1) ... 161s Selecting previously unselected package r-cran-hmisc. 162s Preparing to unpack .../272-r-cran-hmisc_5.1-1-1_arm64.deb ... 162s Unpacking r-cran-hmisc (5.1-1-1) ... 162s Selecting previously unselected package r-cran-dichromat. 162s Preparing to unpack .../273-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 162s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 162s Selecting previously unselected package r-cran-matrixstats. 162s Preparing to unpack .../274-r-cran-matrixstats_1.2.0-1_arm64.deb ... 162s Unpacking r-cran-matrixstats (1.2.0-1) ... 162s Selecting previously unselected package r-bioc-matrixgenerics. 162s Preparing to unpack .../275-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 162s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 162s Selecting previously unselected package r-cran-abind. 162s Preparing to unpack .../276-r-cran-abind_1.4-5-2_all.deb ... 162s Unpacking r-cran-abind (1.4-5-2) ... 162s Selecting previously unselected package r-bioc-s4arrays. 162s Preparing to unpack .../277-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 162s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 162s Selecting previously unselected package r-bioc-sparsearray. 162s Preparing to unpack .../278-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 162s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 162s Selecting previously unselected package r-bioc-delayedarray. 162s Preparing to unpack .../279-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 162s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 162s Selecting previously unselected package r-bioc-summarizedexperiment. 162s Preparing to unpack .../280-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 162s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 163s Selecting previously unselected package r-bioc-rhtslib. 163s Preparing to unpack .../281-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 163s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 163s Selecting previously unselected package r-bioc-rsamtools. 163s Preparing to unpack .../282-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 163s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 163s Selecting previously unselected package r-bioc-genomicalignments. 163s Preparing to unpack .../283-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 163s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 163s Selecting previously unselected package r-cran-rjson. 163s Preparing to unpack .../284-r-cran-rjson_0.2.21-1_arm64.deb ... 163s Unpacking r-cran-rjson (0.2.21-1) ... 163s Selecting previously unselected package r-cran-restfulr. 163s Preparing to unpack .../285-r-cran-restfulr_0.0.15-1_arm64.deb ... 163s Unpacking r-cran-restfulr (0.0.15-1) ... 163s Selecting previously unselected package r-bioc-rtracklayer. 163s Preparing to unpack .../286-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 163s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 163s Selecting previously unselected package r-bioc-genomicfeatures. 164s Preparing to unpack .../287-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 164s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 164s Selecting previously unselected package r-bioc-bsgenome. 164s Preparing to unpack .../288-r-bioc-bsgenome_1.70.2-1_all.deb ... 164s Unpacking r-bioc-bsgenome (1.70.2-1) ... 164s Selecting previously unselected package r-bioc-variantannotation. 164s Preparing to unpack .../289-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 164s Unpacking r-bioc-variantannotation (1.48.1-1) ... 164s Selecting previously unselected package r-bioc-protgenerics. 165s Preparing to unpack .../290-r-bioc-protgenerics_1.34.0-1_all.deb ... 165s Unpacking r-bioc-protgenerics (1.34.0-1) ... 165s Selecting previously unselected package r-bioc-ensembldb. 165s Preparing to unpack .../291-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 165s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 165s Selecting previously unselected package r-bioc-biovizbase. 165s Preparing to unpack .../292-r-bioc-biovizbase_1.50.0-1_arm64.deb ... 165s Unpacking r-bioc-biovizbase (1.50.0-1) ... 165s Selecting previously unselected package r-cran-plyr. 165s Preparing to unpack .../293-r-cran-plyr_1.8.9-1_arm64.deb ... 165s Unpacking r-cran-plyr (1.8.9-1) ... 165s Selecting previously unselected package r-cran-reshape2. 166s Preparing to unpack .../294-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 166s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 166s Selecting previously unselected package r-cran-fastcluster. 166s Preparing to unpack .../295-r-cran-fastcluster_1.2.6-1_arm64.deb ... 166s Unpacking r-cran-fastcluster (1.2.6-1) ... 166s Selecting previously unselected package r-bioc-gviz. 166s Preparing to unpack .../296-r-bioc-gviz_1.46.1+dfsg-1_all.deb ... 166s Unpacking r-bioc-gviz (1.46.1+dfsg-1) ... 166s Selecting previously unselected package r-bioc-cummerbund. 166s Preparing to unpack .../297-r-bioc-cummerbund_2.44.0-1_all.deb ... 166s Unpacking r-bioc-cummerbund (2.44.0-1) ... 166s Selecting previously unselected package autopkgtest-satdep. 167s Preparing to unpack .../298-1-autopkgtest-satdep.deb ... 167s Unpacking autopkgtest-satdep (0) ... 167s Setting up libjs-json (0~20221030+~1.0.8-1) ... 167s Setting up javascript-common (11+nmu1) ... 167s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 167s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 167s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 167s Setting up libpaper1:arm64 (1.1.29) ... 168s 168s Creating config file /etc/papersize with new version 168s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 168s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 168s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 168s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 168s Setting up libdatrie1:arm64 (0.2.13-3) ... 168s Setting up libjs-popper.js (1.16.1+ds-6) ... 168s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 168s Setting up libxcb-render0:arm64 (1.15-1) ... 168s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 168s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 168s Setting up unzip (6.0-28ubuntu3) ... 168s Setting up x11-common (1:7.7+23ubuntu2) ... 169s Setting up node-html5shiv (3.7.3+dfsg-5) ... 169s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 169s Setting up libdeflate0:arm64 (1.19-1) ... 169s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 169s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 169s Setting up libxcb-shm0:arm64 (1.15-1) ... 169s Setting up libpaper-utils (1.1.29) ... 169s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 169s Setting up libjs-modernizr (2.6.2+ds1-5) ... 169s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 169s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 169s Setting up libjs-es5-shim (4.6.7-2) ... 169s Setting up zip (3.0-13) ... 169s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 169s Setting up libblas3:arm64 (3.12.0-3) ... 169s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 169s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 169s Setting up libpkgconf3:arm64 (1.8.1-2) ... 169s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 169s Setting up libjs-d3 (3.5.17-4) ... 169s Setting up fonts-dejavu-mono (2.37-8) ... 169s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 169s Setting up libmpc3:arm64 (1.3.1-1) ... 169s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 169s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 169s Setting up icu-devtools (74.2-1ubuntu1) ... 169s Setting up fonts-dejavu-core (2.37-8) ... 169s Setting up pkgconf-bin (1.8.1-2) ... 169s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 169s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 169s Setting up libwebp7:arm64 (1.3.2-0.4) ... 169s Setting up libreadline8t64:arm64 (8.2-3.1) ... 169s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 169s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 169s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 169s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 169s Setting up libnsl-dev:arm64 (1.3.0-3) ... 169s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 169s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 169s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 169s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 169s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 169s Setting up libthai-data (0.1.29-2) ... 169s Setting up node-bootstrap-sass (3.4.3-2) ... 169s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 169s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 169s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 169s Setting up pandoc-data (3.1.3-1) ... 169s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 169s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 169s Setting up libisl23:arm64 (0.26-3) ... 169s 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(3.12.0-3) ... 169s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 169s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 169s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 169s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 169s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 169s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 169s Setting up pkgconf:arm64 (1.8.1-2) ... 169s Setting up libthai0:arm64 (0.1.29-2) ... 169s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 169s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 169s Setting up pandoc (3.1.3+ds-2) ... 169s Setting up liblapack-dev:arm64 (3.12.0-3) ... 169s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 169s Setting up pkg-config:arm64 (1.8.1-2) ... 169s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 169s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 169s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 169s Setting up curl (8.5.0-2ubuntu7) ... 169s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 169s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 169s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 169s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 169s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 169s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 169s Setting up fontconfig (2.15.0-1ubuntu1) ... 171s Regenerating fonts cache... done. 171s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 171s Setting up libxft2:arm64 (2.3.6-1) ... 171s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 171s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 171s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 171s Setting up cpp-13 (13.2.0-17ubuntu2) ... 171s Setting up libtk8.6:arm64 (8.6.13-2) ... 171s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 171s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 171s Setting up libreadline-dev:arm64 (8.2-3.1) ... 171s Setting up libcairo2:arm64 (1.18.0-1) ... 171s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 171s Setting up gcc-13 (13.2.0-17ubuntu2) ... 171s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 171s Setting up cpp (4:13.2.0-7ubuntu1) ... 171s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 171s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 171s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 171s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 171s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 171s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 171s Setting up g++-13 (13.2.0-17ubuntu2) ... 171s Setting up libpng-dev:arm64 (1.6.43-3) ... 171s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 171s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 171s Setting up gcc (4:13.2.0-7ubuntu1) ... 171s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 171s Setting up r-base-core (4.3.3-2build1) ... 171s 171s Creating config file /etc/R/Renviron with new version 172s Setting up r-cran-crayon (1.5.2-1) ... 172s Setting up r-cran-labeling (0.4.3-1) ... 172s Setting up r-cran-sourcetools (0.1.7-1-1) ... 172s Setting up r-cran-futile.options (1.0.1-3build1) ... 172s Setting up r-cran-lattice (0.22-5-1) ... 172s Setting up r-cran-nlme (3.1.164-1) ... 172s Setting up r-cran-farver (2.1.1-1) ... 172s Setting up r-cran-formatr (1.14-1) ... 172s Setting up r-cran-formula (1.2-5-1) ... 172s Setting up r-cran-xml (3.99-0.16.1-1) ... 172s Setting up r-cran-viridislite (0.4.2-2) ... 172s Setting up r-cran-cluster (2.1.6-1) ... 172s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 172s Setting up r-cran-nnet (7.3-19-2) ... 172s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 172s Setting up r-cran-lazyeval (0.2.2-1build1) ... 172s Setting up r-cran-commonmark (1.9.1-1) ... 172s Setting up r-cran-r6 (2.5.1-1) ... 172s Setting up r-cran-pkgkitten (0.2.3-1) ... 172s Setting up r-cran-jpeg (0.1-10-1) ... 172s Setting up r-cran-chron (2.3-61-2) ... 172s Setting up r-cran-fastcluster (1.2.6-1) ... 172s Setting up r-cran-magrittr (2.0.3-1) ... 172s Setting up r-cran-rappdirs (0.3.3-1) ... 172s Setting up r-cran-filelock (1.0.3-1) ... 172s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 172s Setting up r-cran-littler (0.3.19-1) ... 172s Setting up r-cran-bh (1.84.0-1) ... 172s Setting up r-cran-fs (1.6.3+dfsg-1) ... 172s Setting up r-cran-rcpp (1.0.12-1) ... 172s Setting up r-cran-curl (5.2.0+dfsg-1) ... 172s Setting up r-cran-codetools (0.2-19-1) ... 172s Setting up r-bioc-biocgenerics (0.48.1-2) ... 172s Setting up r-cran-rlang (1.1.3-1) ... 172s Setting up r-cran-matrixstats (1.2.0-1) ... 172s Setting up littler (0.3.19-1) ... 172s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 172s Setting up r-cran-xfun (0.41+dfsg-1) ... 172s Setting up r-cran-sys (3.4.2-1) ... 172s Setting up r-cran-plogr (0.2.0-3build1) ... 172s Setting up r-cran-withr (2.5.0-1) ... 172s Setting up r-cran-backports (1.4.1-1) ... 172s Setting up r-cran-mime (0.12-1) ... 172s Setting up r-cran-generics (0.1.3-1) ... 172s Setting up r-cran-base64enc (0.1-3-3) ... 172s Setting up r-cran-abind (1.4-5-2) ... 172s Setting up r-cran-digest (0.6.34-1) ... 172s Setting up r-cran-yaml (2.3.8-1) ... 172s Setting up r-cran-lambda.r (1.2.4-2build1) ... 172s Setting up r-bioc-protgenerics (1.34.0-1) ... 172s Setting up r-cran-evaluate (0.23-1) ... 172s Setting up r-cran-dbi (1.2.2-1) ... 172s Setting up r-cran-highr (0.10+dfsg-1) ... 172s Setting up r-cran-prettyunits (1.2.0-1) ... 172s Setting up r-cran-fansi (1.0.5-1) ... 172s Setting up r-cran-mass (7.3-60.0.1-1) ... 172s Setting up r-cran-checkmate (2.3.1-1) ... 172s Setting up r-cran-acepack (1.4.2-1) ... 172s Setting up r-cran-snow (1:0.4.4-2) ... 172s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 172s Setting up r-cran-glue (1.7.0-1) ... 172s Setting up r-cran-foreign (0.8.86-1) ... 172s Setting up r-cran-bit (4.0.5-1) ... 172s Setting up r-cran-xtable (1:1.8-4-2) ... 172s Setting up r-cran-cli (3.6.2-1) ... 172s Setting up gfortran (4:13.2.0-7ubuntu1) ... 172s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 172s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 172s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 172s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 172s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 172s Setting up r-cran-bitops (1.0-7-1) ... 172s Setting up r-cran-bit64 (4.0.5-1) ... 172s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 172s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 172s Setting up r-cran-deldir (2.0-4-1) ... 172s Setting up r-cran-askpass (1.2.0-1) ... 172s Setting up r-cran-fastmap (1.1.1-1) ... 172s Setting up r-cran-png (0.1-8-1) ... 172s Setting up r-bioc-biobase (2.62.0-1) ... 172s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 172s Setting up r-cran-rstudioapi (0.15.0-1) ... 172s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 172s Setting up r-cran-utf8 (1.2.4-1) ... 172s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 172s Setting up r-cran-stringi (1.8.3-1) ... 172s Setting up r-cran-cpp11 (0.4.7-1) ... 172s Setting up r-cran-plyr (1.8.9-1) ... 172s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 172s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 172s Setting up r-cran-isoband (0.2.7-1) ... 172s Setting up r-cran-futile.logger (1.4.3-4build1) ... 172s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 172s Setting up r-cran-later (1.3.2+dfsg-1) ... 172s Setting up r-cran-matrix (1.6-5-1) ... 172s Setting up r-cran-tinytex (0.49-1) ... 172s Setting up r-cran-knitr (1.45+dfsg-1) ... 172s Setting up r-cran-mgcv (1.9-1-1) ... 172s Setting up g++ (4:13.2.0-7ubuntu1) ... 172s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 172s Setting up r-cran-cachem (1.0.8-1) ... 172s Setting up build-essential (12.10ubuntu1) ... 172s Setting up r-bioc-iranges (2.36.0-1) ... 172s Setting up r-cran-rjson (0.2.21-1) ... 172s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 172s Setting up r-cran-restfulr (0.0.15-1) ... 172s Setting up r-cran-vctrs (0.6.5-1) ... 172s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 172s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 172s Setting up r-cran-ellipsis (0.3.2-2) ... 172s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 172s Setting up r-base-dev (4.3.3-2build1) ... 172s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 172s Setting up r-cran-stringr (1.5.1-1) ... 172s Setting up r-bioc-biocparallel (1.36.0-1) ... 172s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 172s Setting up r-cran-xml2 (1.3.6-1) ... 172s Setting up r-cran-munsell (0.5.0-2build1) ... 172s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 172s Setting up r-cran-survival (3.5-8-1) ... 172s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 172s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 172s Setting up r-cran-reshape2 (1.4.4-2build1) ... 172s Setting up r-cran-interp (1.1-6-1) ... 172s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 172s Setting up r-cran-httr (1.4.7+dfsg-1) ... 172s Setting up r-cran-gridextra (2.3-3build1) ... 172s Setting up r-cran-hms (1.1.3-1) ... 172s Setting up r-cran-scales (1.3.0-1) ... 172s Setting up r-cran-memoise (2.0.1-1) ... 172s Setting up r-cran-promises (1.2.1+dfsg-1) ... 172s Setting up r-cran-purrr (1.0.2-1) ... 172s Setting up r-cran-blob (1.2.4-1) ... 172s Setting up r-cran-htmltools (0.5.7-1) ... 172s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 172s Setting up r-bioc-xvector (0.42.0-1) ... 172s Setting up r-cran-sass (0.4.8+dfsg-1) ... 172s Setting up r-cran-dplyr (1.1.4-1) ... 172s Setting up r-cran-rsqlite (2.3.4-1) ... 172s Setting up r-cran-progress (1.2.3-1) ... 172s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 172s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 172s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 172s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 172s Setting up r-cran-rpart (4.1.23-1) ... 172s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 172s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 172s Setting up r-cran-fontawesome (0.5.2-1) ... 172s Setting up r-cran-latticeextra (0.6-30-1) ... 172s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 172s Setting up r-cran-viridis (0.6.5-1) ... 172s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 172s Setting up r-cran-tidyr (1.3.1-1) ... 172s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 172s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 172s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 172s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 172s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 172s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 172s Setting up r-bioc-annotationdbi (1.64.1-1) ... 172s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 172s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 172s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 172s Setting up r-bioc-genomicalignments (1.38.2-1) ... 172s Setting up r-bioc-rtracklayer (1.62.0-1) ... 172s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 172s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 172s Setting up r-bioc-bsgenome (1.70.2-1) ... 172s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 172s Setting up r-bioc-variantannotation (1.48.1-1) ... 172s Setting up r-cran-htmltable (2.4.2-1) ... 172s Setting up r-cran-hmisc (5.1-1-1) ... 172s Setting up r-bioc-biovizbase (1.50.0-1) ... 172s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 172s Setting up r-bioc-cummerbund (2.44.0-1) ... 172s Setting up autopkgtest-satdep (0) ... 172s Processing triggers for man-db (2.12.0-3) ... 173s Processing triggers for install-info (7.1-3) ... 173s Processing triggers for libc-bin (2.39-0ubuntu2) ... 188s (Reading database ... 118328 files and directories currently installed.) 188s Removing autopkgtest-satdep (0) ... 189s autopkgtest [17:28:57]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 189s autopkgtest [17:28:57]: test pkg-r-autopkgtest: [----------------------- 190s Test: Try to load the R library cummeRbund 191s 191s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 191s Copyright (C) 2024 The R Foundation for Statistical Computing 191s Platform: aarch64-unknown-linux-gnu (64-bit) 191s 191s R is free software and comes with ABSOLUTELY NO WARRANTY. 191s You are welcome to redistribute it under certain conditions. 191s Type 'license()' or 'licence()' for distribution details. 191s 191s R is a collaborative project with many contributors. 191s Type 'contributors()' for more information and 191s 'citation()' on how to cite R or R packages in publications. 191s 191s Type 'demo()' for some demos, 'help()' for on-line help, or 191s 'help.start()' for an HTML browser interface to help. 191s Type 'q()' to quit R. 191s 191s > library('cummeRbund') 191s Loading required package: BiocGenerics 191s 191s Attaching package: ‘BiocGenerics’ 191s 191s The following objects are masked from ‘package:stats’: 191s 191s IQR, mad, sd, var, xtabs 191s 191s The following objects are masked from ‘package:base’: 191s 191s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 191s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 191s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 191s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 191s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 191s table, tapply, union, unique, unsplit, which.max, which.min 191s 191s Loading required package: RSQLite 191s Loading required package: ggplot2 192s Loading required package: reshape2 192s Loading required package: fastcluster 192s 192s Attaching package: ‘fastcluster’ 192s 192s The following object is masked from ‘package:stats’: 192s 192s hclust 192s 192s Loading required package: rtracklayer 192s Loading required package: GenomicRanges 192s Loading required package: stats4 192s Loading required package: S4Vectors 193s 193s Attaching package: ‘S4Vectors’ 193s 193s The following object is masked from ‘package:utils’: 193s 193s findMatches 193s 193s The following objects are masked from ‘package:base’: 193s 193s expand.grid, I, unname 193s 193s Loading required package: IRanges 193s Loading required package: GenomeInfoDb 200s Loading required package: Gviz 200s Loading required package: grid 206s 206s Attaching package: 'cummeRbund' 206s 206s The following object is masked from 'package:GenomicRanges': 206s 206s promoters 206s 206s The following object is masked from 'package:IRanges': 206s 206s promoters 206s 206s The following object is masked from 'package:BiocGenerics': 206s 206s conditions 206s 206s > 206s > 206s Other tests are currently unsupported! 206s They will be progressively added. 206s autopkgtest [17:29:14]: test pkg-r-autopkgtest: -----------------------] 207s pkg-r-autopkgtest PASS 207s autopkgtest [17:29:15]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 207s autopkgtest [17:29:15]: @@@@@@@@@@@@@@@@@@@@ summary 207s pkg-r-autopkgtest PASS 225s Creating nova instance adt-noble-arm64-r-bioc-cummerbund-20240316-172548-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...