0s autopkgtest [17:24:26]: starting date and time: 2024-03-16 17:24:26+0000 0s autopkgtest [17:24:26]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:24:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.t3kr4tvc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-bsseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-5.secgroup --name adt-noble-arm64-r-bioc-bsseq-20240316-172426-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 208s autopkgtest [17:27:54]: testbed dpkg architecture: arm64 209s autopkgtest [17:27:55]: testbed apt version: 2.7.12 209s autopkgtest [17:27:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 210s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 211s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 212s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 212s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 213s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 213s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 214s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 214s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 214s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 214s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 214s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 214s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 214s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 228s Fetched 9060 kB in 7s (1307 kB/s) 229s Reading package lists... 237s Reading package lists... 238s Building dependency tree... 238s Reading state information... 241s Calculating upgrade... 242s The following packages will be REMOVED: 242s libglib2.0-0 libssl3 242s The following NEW packages will be installed: 242s libglib2.0-0t64 libssl3t64 xdg-user-dirs 242s The following packages have been kept back: 242s curl 242s The following packages will be upgraded: 242s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 243s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 243s Need to get 4592 kB of archives. 243s After this operation, 211 kB of additional disk space will be used. 243s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 243s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 243s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 243s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 243s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 243s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 243s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 243s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 245s Fetched 4592 kB in 1s (4617 kB/s) 246s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 246s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 246s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 247s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 247s udisks2 depends on libglib2.0-0 (>= 2.77.0). 247s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 247s python3-gi depends on libglib2.0-0 (>= 2.77.0). 247s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 247s netplan.io depends on libglib2.0-0 (>= 2.70.0). 247s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 247s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 247s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 247s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 247s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 247s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 247s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 247s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 247s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 247s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 247s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 247s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 247s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 247s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 247s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 247s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 247s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 247s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 247s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 247s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 247s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 247s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 247s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 247s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 247s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 247s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 247s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 247s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 247s fwupd depends on libglib2.0-0 (>= 2.79.0). 247s bolt depends on libglib2.0-0 (>= 2.56.0). 247s 247s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 247s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 247s Selecting previously unselected package libglib2.0-0t64:arm64. 247s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75825 files and directories currently installed.) 247s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 247s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 247s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 247s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 248s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 248s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 248s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 248s wget depends on libssl3 (>= 3.0.0). 248s u-boot-tools depends on libssl3 (>= 3.0.0). 248s tnftp depends on libssl3 (>= 3.0.0). 248s tcpdump depends on libssl3 (>= 3.0.0). 248s systemd-resolved depends on libssl3 (>= 3.0.0). 248s systemd depends on libssl3 (>= 3.0.0). 248s sudo depends on libssl3 (>= 3.0.0). 248s sbsigntool depends on libssl3 (>= 3.0.0). 248s rsync depends on libssl3 (>= 3.0.0). 248s python3-cryptography depends on libssl3 (>= 3.0.0). 248s openssh-server depends on libssl3 (>= 3.0.10). 248s openssh-client depends on libssl3 (>= 3.0.10). 248s mtd-utils depends on libssl3 (>= 3.0.0). 248s mokutil depends on libssl3 (>= 3.0.0). 248s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 248s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 248s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 248s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 248s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 248s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 248s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 248s libnvme1 depends on libssl3 (>= 3.0.0). 248s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 248s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 248s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 248s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 248s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 248s kmod depends on libssl3 (>= 3.0.0). 248s dhcpcd-base depends on libssl3 (>= 3.0.0). 248s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 248s 249s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 249s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 249s Selecting previously unselected package libssl3t64:arm64. 249s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 249s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 249s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 250s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 250s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 250s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 250s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 250s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 250s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 250s Selecting previously unselected package xdg-user-dirs. 250s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 250s Unpacking xdg-user-dirs (0.18-1) ... 250s Setting up xdg-user-dirs (0.18-1) ... 250s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 250s Setting up libtirpc-common (1.3.4+ds-1.1) ... 250s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 250s No schema files found: doing nothing. 250s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 250s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 250s Setting up openssl (3.0.13-0ubuntu1) ... 250s Setting up readline-common (8.2-3.1) ... 250s Processing triggers for man-db (2.12.0-3) ... 254s Processing triggers for install-info (7.1-3) ... 254s Processing triggers for libc-bin (2.39-0ubuntu2) ... 255s Reading package lists... 257s Building dependency tree... 257s Reading state information... 259s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 260s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 260s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 260s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 260s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 268s Reading package lists... 268s Reading package lists... 269s Building dependency tree... 269s Reading state information... 272s Calculating upgrade... 273s The following packages have been kept back: 273s curl 273s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 273s Reading package lists... 275s Building dependency tree... 275s Reading state information... 278s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 283s autopkgtest [17:29:09]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 283s autopkgtest [17:29:09]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-bsseq 287s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-bsseq 1.38.0+dfsg-1 (dsc) [2503 B] 287s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-bsseq 1.38.0+dfsg-1 (tar) [2109 kB] 287s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-bsseq 1.38.0+dfsg-1 (diff) [5528 B] 287s gpgv: Signature made Fri Dec 1 09:49:33 2023 UTC 287s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 287s gpgv: issuer "tillea@rki.de" 287s gpgv: Can't check signature: No public key 287s dpkg-source: warning: cannot verify inline signature for ./r-bioc-bsseq_1.38.0+dfsg-1.dsc: no acceptable signature found 288s autopkgtest [17:29:14]: testing package r-bioc-bsseq version 1.38.0+dfsg-1 289s autopkgtest [17:29:15]: build not needed 290s autopkgtest [17:29:16]: test pkg-r-autopkgtest: preparing testbed 292s Reading package lists... 293s Building dependency tree... 293s Reading state information... 295s Starting pkgProblemResolver with broken count: 0 296s Starting 2 pkgProblemResolver with broken count: 0 296s Done 299s The following additional packages will be installed: 299s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 299s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 299s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 299s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 299s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 299s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 299s gfortran-aarch64-linux-gnu hdf5-helpers icu-devtools javascript-common 299s libaec-dev libaec0 libasan8 libatomic1 libbibtex-parser-perl libblas-dev 299s libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin 299s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 299s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 299s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 299s libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 299s libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 libicu-dev 299s libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 299s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 299s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 299s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 299s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 299s libjs-popper.js libjs-prettify libjs-sifter.js 299s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 299s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 299s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 299s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 299s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 299s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 299s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 299s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 299s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 299s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 299s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 299s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 299s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 299s r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 299s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biostrings r-bioc-bsgenome 299s r-bioc-bsseq r-bioc-delayedarray r-bioc-delayedmatrixstats 299s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 299s r-bioc-genomicranges r-bioc-hdf5array r-bioc-iranges r-bioc-limma 299s r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 299s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 299s r-bioc-s4vectors r-bioc-sparsearray r-bioc-sparsematrixstats 299s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 299s r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools 299s r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-bookdown r-cran-brew 299s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-checkmate 299s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 299s r-cran-crayon r-cran-data.table r-cran-desc r-cran-diffobj r-cran-digest 299s r-cran-doparallel r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 299s r-cran-fastmap r-cran-fontawesome r-cran-foreach r-cran-formatr r-cran-fs 299s r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-gtools 299s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-iterators 299s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 299s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 299s r-cran-locfit r-cran-magrittr r-cran-matrix r-cran-matrixstats 299s r-cran-memoise r-cran-mime r-cran-munsell r-cran-permute r-cran-pillar 299s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 299s r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 299s r-cran-promises r-cran-ps r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 299s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 299s r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 299s r-cran-rprojroot r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 299s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 299s r-cran-testthat r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs 299s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 299s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 299s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 299s xdg-utils zip zlib1g-dev 299s Suggested packages: 299s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 299s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 299s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 299s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 299s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 299s libboost-context1.83-dev libboost-contract1.83-dev 299s libboost-coroutine1.83-dev libboost-date-time1.83-dev 299s libboost-exception1.83-dev libboost-fiber1.83-dev 299s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 299s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 299s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 299s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 299s libboost-numpy1.83-dev libboost-program-options1.83-dev 299s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 299s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 299s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 299s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 299s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 299s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 299s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 299s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 299s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 299s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 299s librsvg2-bin groff ghc php python ruby libjs-katex 299s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 299s r-base-html texlive-plain-generic texlive-fonts-recommended 299s texlive-fonts-extra texlive-extra-utils texinfo r-cran-rcmdcheck r-bioc-all 299s r-cran-runit r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate 299s r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread 299s r-bioc-genomicfeatures r-bioc-genefilter r-cran-lobstr r-cran-profmem 299s r-bioc-edger r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-keggrest 299s r-bioc-experimenthub r-bioc-singlecellexperiment r-cran-biasedurn 299s r-cran-ellipse r-cran-gplots r-cran-mass r-bioc-go.db r-bioc-org.hs.eg.db 299s r-cran-bit64 r-cran-bench r-cran-dplyr r-cran-ggplot2 r-cran-mockery 299s r-cran-tinytest r-bioc-graph r-cran-e1071 r-cran-future 299s r-cran-future.batchtools r-cran-parallelmap r-cran-rpart r-cran-covr 299s r-cran-spelling r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd 299s r-cran-shinyjs r-cran-png r-cran-jpeg r-cran-viridis r-cran-rstudioapi 299s r-cran-markdown r-cran-lubridate r-cran-getopt r-cran-interp r-cran-gam 299s r-cran-httr r-cran-vegan r-cran-sessioninfo r-cran-dbi r-cran-formattable 299s r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units 299s r-cran-vdiffr r-cran-roxygen2 r-cran-inline r-cran-rmpi r-cran-rlecuyer 299s r-cran-blob r-cran-here r-cran-purrr r-cran-tidyr r-cran-plm r-cran-zoo 299s debhelper ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 299s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 299s Recommended packages: 299s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 299s r-recommended r-doc-html r-cran-openssl r-cran-ranger r-bioc-biocversion 299s r-cran-remotes r-cran-curl r-cran-downlit r-cran-htmlwidgets 299s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 299s r-cran-xml2 r-cran-webshot r-cran-covr r-cran-ggplot2 r-cran-thematic 299s r-cran-cliapp r-cran-mockery r-cran-fastmatch r-cran-devtools 299s r-cran-tinytest r-cran-whoami r-cran-bench r-cran-decor r-cran-lobstr 299s r-cran-bit64 r-cran-bit r-cran-xts r-cran-nanotime r-cran-zoo r-cran-gh 299s r-cran-spelling r-cran-runit r-cran-caret r-cran-mlbench r-cran-rpart 299s r-cran-unitizer r-cran-dplyr r-cran-rsvg r-cran-survival r-cran-dbi 299s r-cran-rsqlite r-cran-cairo r-cran-markdown r-cran-ragg r-cran-httr 299s r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-png 299s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 299s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 299s r-cran-lubridate r-cran-mathjaxr r-cran-mockr r-cran-webfakes r-cran-future 299s r-cran-purrr r-cran-pingr r-cran-usethis r-cran-dygraphs r-cran-dichromat 299s r-cran-formattable r-cran-generics r-cran-pkgdown r-cran-zeallot r-cran-renv 299s lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 299s x11-utils x11-xserver-utils 300s The following packages will be REMOVED: 300s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 300s The following NEW packages will be installed: 300s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 300s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 300s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 300s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 300s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 300s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 300s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 300s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 300s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 300s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 300s libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 300s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 300s libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 300s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 300s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 300s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 300s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 300s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 300s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 300s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 300s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 300s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 300s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 300s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 300s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 300s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 300s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 300s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 300s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 300s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 300s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 300s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 300s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 300s r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 300s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biostrings r-bioc-bsgenome 300s r-bioc-bsseq r-bioc-delayedarray r-bioc-delayedmatrixstats 300s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 300s r-bioc-genomicranges r-bioc-hdf5array r-bioc-iranges r-bioc-limma 300s r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 300s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 300s r-bioc-s4vectors r-bioc-sparsearray r-bioc-sparsematrixstats 300s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 300s r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools 300s r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-bookdown r-cran-brew 300s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-checkmate 300s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 300s r-cran-crayon r-cran-data.table r-cran-desc r-cran-diffobj r-cran-digest 300s r-cran-doparallel r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 300s r-cran-fastmap r-cran-fontawesome r-cran-foreach r-cran-formatr r-cran-fs 300s r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-gtools 300s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-iterators 300s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 300s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 300s r-cran-locfit r-cran-magrittr r-cran-matrix r-cran-matrixstats 300s r-cran-memoise r-cran-mime r-cran-munsell r-cran-permute r-cran-pillar 300s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 300s r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 300s r-cran-promises r-cran-ps r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 300s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 300s r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 300s r-cran-rprojroot r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 300s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 300s r-cran-testthat r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs 300s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 300s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 300s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 300s xdg-utils zip zlib1g-dev 300s The following packages will be upgraded: 300s curl 300s 1 upgraded, 316 newly installed, 5 to remove and 0 not upgraded. 300s Need to get 448 MB/448 MB of archives. 300s After this operation, 1411 MB of additional disk space will be used. 300s Get:1 /tmp/autopkgtest.H03Jie/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [788 B] 300s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 300s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 301s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 301s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 301s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 301s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 301s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 301s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 302s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 302s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 302s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 302s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 302s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 302s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 303s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 303s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 304s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 304s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 304s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 304s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 304s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 304s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 304s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 304s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 304s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 305s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 305s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 305s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 305s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 305s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 306s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 306s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 306s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 306s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 307s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 307s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 307s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 307s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 307s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 307s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 307s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 307s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 307s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 307s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 307s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 307s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 308s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 308s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 308s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 308s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 308s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 308s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 309s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 309s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 309s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 309s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 hdf5-helpers arm64 1.10.10+repack-3ubuntu1 [15.5 kB] 309s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 309s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 309s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 309s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 309s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 309s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 309s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 309s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 309s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 309s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 309s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 310s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 310s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 310s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 310s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 310s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 310s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 310s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 310s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu7 [454 kB] 310s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 310s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 310s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 310s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 310s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 310s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 310s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-cpp-103-1 arm64 1.10.10+repack-3ubuntu1 [120 kB] 310s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-fortran-102 arm64 1.10.10+repack-3ubuntu1 [86.3 kB] 310s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 310s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.10+repack-3ubuntu1 [30.7 kB] 310s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-cpp-100 arm64 1.10.10+repack-3ubuntu1 [10.7 kB] 310s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 310s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 310s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 310s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 310s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 310s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 310s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 310s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl-dev arm64 3.0.13-0ubuntu1 [2335 kB] 311s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-dev arm64 1.10.10+repack-3ubuntu1 [3036 kB] 311s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 311s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 311s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 312s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 312s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 312s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 312s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 312s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 312s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 312s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 312s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 312s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 312s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 312s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 312s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 312s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 312s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 312s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 312s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 312s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 313s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 313s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 313s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 313s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 313s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 313s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 313s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 313s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 313s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 313s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 313s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 313s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 313s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 313s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 313s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 313s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 313s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 313s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 314s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 314s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 314s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 314s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 314s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 314s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 314s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 314s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 314s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 314s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 314s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 314s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 314s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 314s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 314s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 314s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 314s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 314s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 314s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 314s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 314s Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 314s Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 314s Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 314s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 316s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 316s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 316s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 316s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 316s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 316s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 316s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 317s Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 317s Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 317s Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 317s Get:169 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 317s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 317s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 317s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 317s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 317s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 318s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 318s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 318s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 318s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 318s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 318s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 318s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 318s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 318s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 318s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 318s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 318s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 318s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 318s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-beachmat arm64 2.18.1+ds-1 [1561 kB] 318s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 319s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 319s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 319s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 319s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 319s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 319s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 319s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 319s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 319s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 319s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 319s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 319s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 319s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 319s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 319s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 319s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 320s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 320s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 320s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 320s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 320s Get:210 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 320s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 320s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 320s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 320s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 320s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 321s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 321s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 321s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 321s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 321s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 321s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 321s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 321s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 321s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 321s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 321s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 321s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 321s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 321s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 321s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 321s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 321s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 321s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 321s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 321s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 321s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 321s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 321s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 321s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 321s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 322s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 322s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 322s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 322s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 322s Get:245 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 322s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 322s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 324s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 324s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 329s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 329s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 329s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 329s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 330s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 330s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 331s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 331s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 331s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 331s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 332s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 332s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 332s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 332s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 332s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 332s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 333s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 333s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 333s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 333s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 333s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 333s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 333s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 333s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 333s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtools arm64 3.9.5-1 [340 kB] 333s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 333s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 333s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 334s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 334s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsematrixstats arm64 1.14.0+dfsg-1 [815 kB] 334s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 334s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-permute all 0.9-7-1 [228 kB] 334s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 334s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 334s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5lib arm64 1.24.2+dfsg-1 [96.1 kB] 334s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5filters arm64 1.14.1+dfsg-3 [135 kB] 334s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5 arm64 2.46.1+dfsg-1 [805 kB] 334s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-hdf5array arm64 1.30.1-1 [8757 kB] 335s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsseq arm64 1.38.0+dfsg-1 [2945 kB] 335s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 335s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64url arm64 1.4-2build1 [26.4 kB] 335s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brew all 1.0-10-1 [77.7 kB] 335s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 335s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 335s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 335s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 335s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 335s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-batchtools arm64 0.9.17+dfsg-1 [712 kB] 335s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 335s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 335s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 335s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 335s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 335s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 335s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB] 335s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB] 336s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-doparallel all 1.0.17-1 [189 kB] 336s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 336s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 336s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 336s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 337s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 337s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 337s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 337s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 337s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 337s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 337s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 341s Preconfiguring packages ... 342s Fetched 448 MB in 37s (11.9 MB/s) 342s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 342s wget depends on libpsl5 (>= 0.16.0). 342s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 342s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 342s 342s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75866 files and directories currently installed.) 342s Removing libpsl5:arm64 (0.21.2-1build1) ... 342s Selecting previously unselected package libpsl5t64:arm64. 342s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75861 files and directories currently installed.) 342s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 342s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 342s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 342s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 343s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75867 files and directories currently installed.) 343s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 343s Selecting previously unselected package libcurl4t64:arm64. 343s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75862 files and directories currently installed.) 343s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 343s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 344s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 344s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 344s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 344s 344s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75868 files and directories currently installed.) 344s Removing libpng16-16:arm64 (1.6.43-1) ... 344s Selecting previously unselected package libpng16-16t64:arm64. 344s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75858 files and directories currently installed.) 344s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 344s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 345s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 345s parted depends on libreadline8 (>= 6.0). 345s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 345s libpython3.11-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 345s gpgsm depends on libreadline8 (>= 6.0). 345s gpgconf depends on libreadline8 (>= 6.0). 345s gpg depends on libreadline8 (>= 6.0). 345s gawk depends on libreadline8 (>= 6.0). 345s fdisk depends on libreadline8 (>= 6.0). 345s 345s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 345s Removing libreadline8:arm64 (8.2-3) ... 345s Selecting previously unselected package libreadline8t64:arm64. 345s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75857 files and directories currently installed.) 345s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 345s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 345s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 345s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 345s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 345s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 346s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 346s lsof depends on libtirpc3 (>= 1.0.2). 346s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 346s libpython3.11-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 346s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 346s iproute2 depends on libtirpc3 (>= 1.0.2). 346s 346s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75877 files and directories currently installed.) 346s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 347s Selecting previously unselected package libtirpc3t64:arm64. 347s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75871 files and directories currently installed.) 347s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 347s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 347s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 347s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 347s Selecting previously unselected package libc-dev-bin. 347s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 347s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 347s Selecting previously unselected package linux-libc-dev:arm64. 347s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 347s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 349s Selecting previously unselected package libcrypt-dev:arm64. 349s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 349s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 349s Selecting previously unselected package libtirpc-dev:arm64. 349s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 349s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 349s Selecting previously unselected package libnsl-dev:arm64. 349s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 349s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 349s Selecting previously unselected package rpcsvc-proto. 349s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 349s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 349s Selecting previously unselected package libc6-dev:arm64. 349s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 349s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 350s Selecting previously unselected package libisl23:arm64. 350s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 350s Unpacking libisl23:arm64 (0.26-3) ... 350s Selecting previously unselected package libmpc3:arm64. 350s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 350s Unpacking libmpc3:arm64 (1.3.1-1) ... 351s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 351s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 351s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 352s Selecting previously unselected package cpp-13. 352s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 352s Unpacking cpp-13 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Selecting previously unselected package libatomic1:arm64. 353s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libasan8:arm64. 353s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package liblsan0:arm64. 353s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libtsan2:arm64. 354s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 354s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libubsan1:arm64. 354s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 354s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libhwasan0:arm64. 354s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 354s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libgcc-13-dev:arm64. 355s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 355s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 355s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 355s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 355s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 358s Selecting previously unselected package gcc-13. 358s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 358s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 358s Selecting previously unselected package gcc-aarch64-linux-gnu. 358s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 358s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 358s Selecting previously unselected package gcc. 358s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 358s Unpacking gcc (4:13.2.0-7ubuntu1) ... 358s Selecting previously unselected package libstdc++-13-dev:arm64. 358s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 358s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 360s Selecting previously unselected package g++-13-aarch64-linux-gnu. 360s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 360s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 361s Selecting previously unselected package g++-13. 361s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 361s Unpacking g++-13 (13.2.0-17ubuntu2) ... 361s Selecting previously unselected package g++-aarch64-linux-gnu. 361s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 361s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 361s Selecting previously unselected package g++. 361s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 361s Unpacking g++ (4:13.2.0-7ubuntu1) ... 361s Selecting previously unselected package build-essential. 361s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 361s Unpacking build-essential (12.10ubuntu1) ... 361s Selecting previously unselected package dctrl-tools. 361s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 361s Unpacking dctrl-tools (2.24-3build2) ... 362s Selecting previously unselected package fonts-dejavu-mono. 362s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 362s Unpacking fonts-dejavu-mono (2.37-8) ... 362s Selecting previously unselected package fonts-dejavu-core. 362s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 362s Unpacking fonts-dejavu-core (2.37-8) ... 362s Selecting previously unselected package fontconfig-config. 362s Preparing to unpack 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fonts-lmodern. 365s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 365s Unpacking fonts-lmodern (2.005-1) ... 365s Selecting previously unselected package fonts-mathjax. 365s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 365s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 366s Selecting previously unselected package libgfortran5:arm64. 366s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 366s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 366s Selecting previously unselected package libgfortran-13-dev:arm64. 366s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 366s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 366s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 366s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 366s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 368s Selecting previously unselected package gfortran-13. 368s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 368s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 369s Selecting previously unselected package gfortran-aarch64-linux-gnu. 369s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 369s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 369s Selecting previously unselected package gfortran. 369s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 369s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 369s Selecting previously unselected package hdf5-helpers. 369s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_arm64.deb ... 369s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 369s Selecting previously unselected package icu-devtools. 369s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_arm64.deb ... 369s Unpacking icu-devtools (74.2-1ubuntu1) ... 369s Selecting previously unselected package javascript-common. 369s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 369s Unpacking javascript-common (11+nmu1) ... 369s Selecting previously unselected package libaec0:arm64. 369s Preparing to unpack .../053-libaec0_1.1.2-1_arm64.deb ... 369s Unpacking libaec0:arm64 (1.1.2-1) ... 370s Selecting previously unselected package libio-string-perl. 370s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 370s Unpacking libio-string-perl (1.08-4) ... 370s Selecting previously unselected package liblatex-tounicode-perl. 370s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 370s Unpacking liblatex-tounicode-perl (0.54-2) ... 370s Selecting previously unselected package libbibtex-parser-perl. 370s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 370s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 370s Selecting previously unselected package libblas3:arm64. 370s Preparing to unpack .../057-libblas3_3.12.0-3_arm64.deb ... 370s Unpacking libblas3:arm64 (3.12.0-3) ... 370s Selecting previously unselected package libblas-dev:arm64. 370s Preparing to unpack .../058-libblas-dev_3.12.0-3_arm64.deb ... 370s Unpacking libblas-dev:arm64 (3.12.0-3) ... 370s Selecting previously unselected package libsnappy1v5:arm64. 370s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_arm64.deb ... 370s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 371s Selecting previously unselected package libblosc1:arm64. 371s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_arm64.deb ... 371s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 371s Selecting previously unselected package libboost1.83-dev:arm64. 371s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 371s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 389s Selecting previously unselected package libboost-dev:arm64. 389s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 389s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 389s Selecting previously unselected package libbz2-dev:arm64. 389s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 389s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 389s Selecting previously unselected package libpixman-1-0:arm64. 389s Preparing to unpack .../064-libpixman-1-0_0.42.2-1_arm64.deb ... 389s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 389s Selecting previously unselected package libxcb-render0:arm64. 390s Preparing to unpack .../065-libxcb-render0_1.15-1_arm64.deb ... 390s Unpacking libxcb-render0:arm64 (1.15-1) ... 390s Selecting previously unselected package libxcb-shm0:arm64. 390s Preparing to unpack .../066-libxcb-shm0_1.15-1_arm64.deb ... 390s Unpacking libxcb-shm0:arm64 (1.15-1) ... 390s Selecting previously unselected package libxrender1:arm64. 390s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 390s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 390s Selecting previously unselected package libcairo2:arm64. 390s Preparing to unpack .../068-libcairo2_1.18.0-1_arm64.deb ... 390s Unpacking libcairo2:arm64 (1.18.0-1) ... 390s Selecting previously unselected package libcurl4-openssl-dev:arm64. 390s Preparing to unpack .../069-libcurl4-openssl-dev_8.5.0-2ubuntu7_arm64.deb ... 390s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 391s Selecting previously unselected package libdatrie1:arm64. 391s Preparing to unpack .../070-libdatrie1_0.2.13-3_arm64.deb ... 391s Unpacking libdatrie1:arm64 (0.2.13-3) ... 391s Selecting previously unselected package libdeflate0:arm64. 391s Preparing to unpack .../071-libdeflate0_1.19-1_arm64.deb ... 391s Unpacking libdeflate0:arm64 (1.19-1) ... 391s Selecting previously unselected package libgraphite2-3:arm64. 391s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_arm64.deb ... 391s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 391s Selecting previously unselected package libharfbuzz0b:arm64. 391s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_arm64.deb ... 391s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 391s Selecting previously unselected package libsz2:arm64. 391s Preparing to unpack .../074-libsz2_1.1.2-1_arm64.deb ... 391s Unpacking libsz2:arm64 (1.1.2-1) ... 391s Selecting previously unselected package libhdf5-103-1:arm64. 391s Preparing to unpack .../075-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 391s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 392s Selecting previously unselected package libhdf5-cpp-103-1:arm64. 392s Preparing to unpack .../076-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 392s Unpacking libhdf5-cpp-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 392s Selecting previously unselected package libhdf5-fortran-102:arm64. 392s Preparing to unpack .../077-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_arm64.deb ... 392s Unpacking libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 392s Selecting previously unselected package libhdf5-hl-100:arm64. 392s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 392s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 392s Selecting previously unselected package libhdf5-hl-fortran-100:arm64. 392s Preparing to unpack .../079-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_arm64.deb ... 392s Unpacking libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 392s Selecting previously unselected package libhdf5-hl-cpp-100:arm64. 392s Preparing to unpack .../080-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_arm64.deb ... 392s Unpacking libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 393s Selecting previously unselected package zlib1g-dev:arm64. 393s Preparing to unpack .../081-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 393s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 393s Selecting previously unselected package libjpeg-turbo8:arm64. 393s Preparing to unpack .../082-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 393s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 393s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 393s Preparing to unpack .../083-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 393s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 393s Selecting previously unselected package libjpeg8:arm64. 393s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_arm64.deb ... 393s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 393s Selecting previously unselected package libjpeg8-dev:arm64. 393s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 393s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 393s Selecting previously unselected package libjpeg-dev:arm64. 393s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 393s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 394s Selecting previously unselected package libaec-dev:arm64. 394s Preparing to unpack .../087-libaec-dev_1.1.2-1_arm64.deb ... 394s Unpacking libaec-dev:arm64 (1.1.2-1) ... 394s Selecting previously unselected package libssl-dev:arm64. 394s Preparing to unpack .../088-libssl-dev_3.0.13-0ubuntu1_arm64.deb ... 394s Unpacking libssl-dev:arm64 (3.0.13-0ubuntu1) ... 394s Selecting previously unselected package libhdf5-dev. 394s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_arm64.deb ... 394s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 395s Selecting previously unselected package x11-common. 395s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 395s Unpacking x11-common (1:7.7+23ubuntu2) ... 395s Selecting previously unselected package libice6:arm64. 395s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_arm64.deb ... 395s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 395s Selecting previously unselected package libicu-dev:arm64. 395s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_arm64.deb ... 395s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 398s Selecting previously unselected package libjs-bootstrap. 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libjs-highlight.js (9.18.5+dfsg1-2) ... 400s Selecting previously unselected package libjs-jquery. 400s Preparing to unpack .../099-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 400s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 400s Selecting previously unselected package libjs-jquery-datatables. 400s Preparing to unpack .../100-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 400s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 400s Selecting previously unselected package libjs-sifter.js. 400s Preparing to unpack .../101-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 400s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 400s Selecting previously unselected package libjs-microplugin.js. 401s Preparing to unpack .../102-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 401s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 401s Selecting previously unselected package libjs-jquery-selectize.js. 401s Preparing to unpack .../103-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 401s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 401s Selecting previously unselected package libjs-jquery-ui. 401s Preparing to unpack .../104-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 401s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 401s Selecting previously unselected package libjs-json. 401s Preparing to unpack .../105-libjs-json_0~20221030+~1.0.8-1_all.deb ... 401s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 401s Selecting previously unselected package libjs-lunr. 401s Preparing to unpack .../106-libjs-lunr_2.3.9~dfsg-2_all.deb ... 401s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 402s Selecting previously unselected package libjs-prettify. 402s Preparing to unpack .../107-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 402s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 402s Selecting previously unselected package libkpathsea6:arm64. 402s Preparing to unpack .../108-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 402s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 402s Selecting previously unselected package liblapack3:arm64. 402s Preparing to unpack .../109-liblapack3_3.12.0-3_arm64.deb ... 402s Unpacking liblapack3:arm64 (3.12.0-3) ... 402s Selecting previously unselected package liblapack-dev:arm64. 402s Preparing to unpack .../110-liblapack-dev_3.12.0-3_arm64.deb ... 402s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 403s Selecting previously unselected package liblerc4:arm64. 403s Preparing to unpack .../111-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 403s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 403s Selecting previously unselected package liblua5.4-0:arm64. 403s Preparing to unpack .../112-liblua5.4-0_5.4.6-3_arm64.deb ... 403s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 404s Selecting previously unselected package libncurses-dev:arm64. 404s Preparing to unpack .../113-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 404s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 404s Selecting previously unselected package libthai-data. 404s Preparing to unpack .../114-libthai-data_0.1.29-2_all.deb ... 404s Unpacking libthai-data (0.1.29-2) ... 404s Selecting previously unselected package libthai0:arm64. 404s Preparing to unpack .../115-libthai0_0.1.29-2_arm64.deb ... 404s Unpacking libthai0:arm64 (0.1.29-2) ... 404s Selecting previously unselected package libpango-1.0-0:arm64. 404s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 404s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 404s Selecting previously unselected package libpangoft2-1.0-0:arm64. 404s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 404s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 405s Selecting previously unselected package libpangocairo-1.0-0:arm64. 405s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 405s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 405s Selecting previously unselected package libpaper1:arm64. 405s Preparing to unpack .../119-libpaper1_1.1.29_arm64.deb ... 405s Unpacking libpaper1:arm64 (1.1.29) ... 405s Selecting previously unselected package libpaper-utils. 405s Preparing to unpack .../120-libpaper-utils_1.1.29_arm64.deb ... 405s Unpacking libpaper-utils (1.1.29) ... 405s Selecting previously unselected package libpcre2-16-0:arm64. 405s Preparing to unpack .../121-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 405s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 405s Selecting previously unselected package libpcre2-32-0:arm64. 405s Preparing to unpack .../122-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 405s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 405s Selecting previously unselected package libpcre2-posix3:arm64. 405s Preparing to unpack .../123-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 405s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 405s Selecting previously unselected package libpcre2-dev:arm64. 405s Preparing to unpack .../124-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 405s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 406s Selecting previously unselected package libpkgconf3:arm64. 406s Preparing to unpack .../125-libpkgconf3_1.8.1-2_arm64.deb ... 406s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 406s Selecting previously unselected package libpng-dev:arm64. 406s Preparing to unpack .../126-libpng-dev_1.6.43-3_arm64.deb ... 406s Unpacking libpng-dev:arm64 (1.6.43-3) ... 406s Selecting previously unselected package libpotrace0:arm64. 406s Preparing to unpack .../127-libpotrace0_1.16-2_arm64.deb ... 406s Unpacking libpotrace0:arm64 (1.16-2) ... 406s Selecting previously unselected package libptexenc1:arm64. 406s Preparing to unpack .../128-libptexenc1_2023.20230311.66589-9_arm64.deb ... 406s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 406s Selecting previously unselected package libreadline-dev:arm64. 406s Preparing to unpack .../129-libreadline-dev_8.2-3.1_arm64.deb ... 406s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 406s Selecting previously unselected package libsharpyuv0:arm64. 406s Preparing to unpack .../130-libsharpyuv0_1.3.2-0.4_arm64.deb ... 406s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 406s Selecting previously unselected package libsm6:arm64. 406s Preparing to unpack .../131-libsm6_2%3a1.2.3-1build2_arm64.deb ... 406s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 407s Selecting previously unselected package libsynctex2:arm64. 407s Preparing to unpack .../132-libsynctex2_2023.20230311.66589-9_arm64.deb ... 407s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 407s Selecting previously unselected package libtcl8.6:arm64. 407s Preparing to unpack .../133-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 407s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 407s Selecting previously unselected package libteckit0:arm64. 407s Preparing to unpack .../134-libteckit0_2.5.12+ds1-1_arm64.deb ... 407s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 407s Selecting previously unselected package libtexlua53-5:arm64. 407s Preparing to unpack .../135-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 407s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 407s Selecting previously unselected package libjbig0:arm64. 407s Preparing to unpack .../136-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 407s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 408s Selecting previously unselected package libwebp7:arm64. 408s Preparing to unpack .../137-libwebp7_1.3.2-0.4_arm64.deb ... 408s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 408s Selecting previously unselected package libtiff6:arm64. 408s Preparing to unpack .../138-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 408s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 408s Selecting previously unselected package libxft2:arm64. 408s Preparing to unpack .../139-libxft2_2.3.6-1_arm64.deb ... 408s Unpacking libxft2:arm64 (2.3.6-1) ... 408s Selecting previously unselected package libxss1:arm64. 408s Preparing to unpack .../140-libxss1_1%3a1.2.3-1build2_arm64.deb ... 408s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 408s Selecting previously unselected package libtk8.6:arm64. 408s Preparing to unpack .../141-libtk8.6_8.6.13-2_arm64.deb ... 408s Unpacking libtk8.6:arm64 (8.6.13-2) ... 408s Selecting previously unselected package libxt6t64:arm64. 408s Preparing to unpack .../142-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 408s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 408s Selecting previously unselected package libxmu6:arm64. 408s Preparing to unpack .../143-libxmu6_2%3a1.1.3-3_arm64.deb ... 408s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 409s Selecting previously unselected package libxpm4:arm64. 409s Preparing to unpack .../144-libxpm4_1%3a3.5.17-1_arm64.deb ... 409s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 409s Selecting previously unselected package libxaw7:arm64. 409s Preparing to unpack .../145-libxaw7_2%3a1.0.14-1_arm64.deb ... 409s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 409s Selecting previously unselected package libxi6:arm64. 409s Preparing to unpack .../146-libxi6_2%3a1.8.1-1_arm64.deb ... 409s Unpacking libxi6:arm64 (2:1.8.1-1) ... 409s Selecting previously unselected package libzzip-0-13:arm64. 409s Preparing to unpack .../147-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 409s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 410s Selecting previously unselected package zip. 410s Preparing to unpack .../148-zip_3.0-13_arm64.deb ... 410s Unpacking zip (3.0-13) ... 410s Selecting previously unselected package unzip. 410s Preparing to unpack .../149-unzip_6.0-28ubuntu3_arm64.deb ... 410s Unpacking unzip (6.0-28ubuntu3) ... 410s Selecting previously unselected package xdg-utils. 410s Preparing to unpack .../150-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 410s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 410s Selecting previously unselected package r-base-core. 410s Preparing to unpack .../151-r-base-core_4.3.3-2build1_arm64.deb ... 410s Unpacking r-base-core (4.3.3-2build1) ... 412s Selecting previously unselected package r-cran-littler. 412s Preparing to unpack .../152-r-cran-littler_0.3.19-1_arm64.deb ... 412s Unpacking r-cran-littler (0.3.19-1) ... 412s Selecting previously unselected package littler. 412s Preparing to unpack .../153-littler_0.3.19-1_all.deb ... 412s Unpacking littler (0.3.19-1) ... 412s Selecting previously unselected package node-bootstrap-sass. 412s Preparing to unpack .../154-node-bootstrap-sass_3.4.3-2_all.deb ... 412s Unpacking node-bootstrap-sass (3.4.3-2) ... 412s Selecting previously unselected package node-html5shiv. 413s Preparing to unpack .../155-node-html5shiv_3.7.3+dfsg-5_all.deb ... 413s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 413s Selecting previously unselected package node-normalize.css. 413s Preparing to unpack .../156-node-normalize.css_8.0.1-5_all.deb ... 413s Unpacking node-normalize.css (8.0.1-5) ... 413s Selecting previously unselected package pandoc-data. 413s Preparing to unpack .../157-pandoc-data_3.1.3-1_all.deb ... 413s Unpacking pandoc-data (3.1.3-1) ... 413s Selecting previously unselected package pandoc. 413s Preparing to unpack .../158-pandoc_3.1.3+ds-2_arm64.deb ... 413s Unpacking pandoc (3.1.3+ds-2) ... 418s Selecting previously unselected package pkgconf-bin. 418s Preparing to unpack .../159-pkgconf-bin_1.8.1-2_arm64.deb ... 418s Unpacking pkgconf-bin (1.8.1-2) ... 418s Selecting previously unselected package pkgconf:arm64. 419s Preparing to unpack .../160-pkgconf_1.8.1-2_arm64.deb ... 419s Unpacking pkgconf:arm64 (1.8.1-2) ... 419s Selecting previously unselected package pkg-config:arm64. 419s Preparing to unpack .../161-pkg-config_1.8.1-2_arm64.deb ... 419s Unpacking pkg-config:arm64 (1.8.1-2) ... 419s Selecting previously unselected package liblzma-dev:arm64. 419s Preparing to unpack .../162-liblzma-dev_5.4.5-0.3_arm64.deb ... 419s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 419s Selecting previously unselected package r-base-dev. 419s Preparing to unpack .../163-r-base-dev_4.3.3-2build1_all.deb ... 419s Unpacking r-base-dev (4.3.3-2build1) ... 419s Selecting previously unselected package pkg-r-autopkgtest. 419s Preparing to unpack .../164-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 419s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 419s Selecting previously unselected package r-bioc-biocgenerics. 419s Preparing to unpack .../165-r-bioc-biocgenerics_0.48.1-2_all.deb ... 419s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 419s Selecting previously unselected package r-cran-lattice. 420s Preparing to unpack .../166-r-cran-lattice_0.22-5-1_arm64.deb ... 420s Unpacking r-cran-lattice (0.22-5-1) ... 420s Selecting previously unselected package r-cran-matrix. 420s Preparing to unpack .../167-r-cran-matrix_1.6-5-1_arm64.deb ... 420s Unpacking r-cran-matrix (1.6-5-1) ... 420s Selecting previously unselected package r-cran-matrixstats. 420s Preparing to unpack .../168-r-cran-matrixstats_1.2.0-1_arm64.deb ... 421s Unpacking r-cran-matrixstats (1.2.0-1) ... 421s Selecting previously unselected package r-bioc-matrixgenerics. 421s Preparing to unpack .../169-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 421s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 421s Selecting previously unselected package r-bioc-s4vectors. 421s Preparing to unpack .../170-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 421s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 421s Selecting previously unselected package r-bioc-iranges. 421s Preparing to unpack .../171-r-bioc-iranges_2.36.0-1_arm64.deb ... 421s Unpacking r-bioc-iranges (2.36.0-1) ... 421s Selecting previously unselected package r-cran-abind. 421s Preparing to unpack .../172-r-cran-abind_1.4-5-2_all.deb ... 421s Unpacking r-cran-abind (1.4-5-2) ... 422s Selecting previously unselected package r-cran-crayon. 422s Preparing to unpack .../173-r-cran-crayon_1.5.2-1_all.deb ... 422s Unpacking r-cran-crayon (1.5.2-1) ... 422s Selecting previously unselected package r-bioc-s4arrays. 422s Preparing to unpack .../174-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 422s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 422s Selecting previously unselected package r-bioc-zlibbioc. 422s Preparing to unpack .../175-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 422s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 422s Selecting previously unselected package r-bioc-xvector. 422s Preparing to unpack .../176-r-bioc-xvector_0.42.0-1_arm64.deb ... 422s Unpacking r-bioc-xvector (0.42.0-1) ... 422s Selecting previously unselected package r-bioc-sparsearray. 422s Preparing to unpack .../177-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 422s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 422s Selecting previously unselected package r-bioc-delayedarray. 422s Preparing to unpack .../178-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 422s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 423s Selecting previously unselected package r-cran-pkgkitten. 423s Preparing to unpack .../179-r-cran-pkgkitten_0.2.3-1_all.deb ... 423s Unpacking r-cran-pkgkitten (0.2.3-1) ... 423s Selecting previously unselected package r-cran-rcpp. 423s Preparing to unpack .../180-r-cran-rcpp_1.0.12-1_arm64.deb ... 423s Unpacking r-cran-rcpp (1.0.12-1) ... 424s Selecting previously unselected package r-bioc-beachmat. 424s Preparing to unpack .../181-r-bioc-beachmat_2.18.1+ds-1_arm64.deb ... 424s Unpacking r-bioc-beachmat (2.18.1+ds-1) ... 424s Selecting previously unselected package r-bioc-biobase. 424s Preparing to unpack .../182-r-bioc-biobase_2.62.0-1_arm64.deb ... 424s Unpacking r-bioc-biobase (2.62.0-1) ... 425s Selecting previously unselected package r-bioc-biocio. 425s Preparing to unpack .../183-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 425s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 425s Selecting previously unselected package r-cran-formatr. 425s Preparing to unpack .../184-r-cran-formatr_1.14-1_all.deb ... 425s Unpacking r-cran-formatr (1.14-1) ... 425s Selecting previously unselected package r-cran-lambda.r. 425s Preparing to unpack .../185-r-cran-lambda.r_1.2.4-2build1_all.deb ... 425s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 425s Selecting previously unselected package r-cran-futile.options. 425s Preparing to unpack .../186-r-cran-futile.options_1.0.1-3build1_all.deb ... 425s Unpacking r-cran-futile.options (1.0.1-3build1) ... 425s Selecting previously unselected package r-cran-futile.logger. 425s Preparing to unpack .../187-r-cran-futile.logger_1.4.3-4build1_all.deb ... 425s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 426s Selecting previously unselected package r-cran-snow. 426s Preparing to unpack .../188-r-cran-snow_1%3a0.4.4-2_all.deb ... 426s Unpacking r-cran-snow (1:0.4.4-2) ... 426s Selecting previously unselected package r-cran-codetools. 426s Preparing to unpack .../189-r-cran-codetools_0.2-19-1_all.deb ... 426s Unpacking r-cran-codetools (0.2-19-1) ... 426s Selecting previously unselected package r-cran-bh. 426s Preparing to unpack .../190-r-cran-bh_1.84.0-1_all.deb ... 426s Unpacking r-cran-bh (1.84.0-1) ... 426s Selecting previously unselected package r-cran-cpp11. 426s Preparing to unpack .../191-r-cran-cpp11_0.4.7-1_all.deb ... 426s Unpacking r-cran-cpp11 (0.4.7-1) ... 426s Selecting previously unselected package r-bioc-biocparallel. 426s Preparing to unpack .../192-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 426s Unpacking r-bioc-biocparallel (1.36.0-1) ... 427s Selecting previously unselected package r-cran-base64enc. 427s Preparing to unpack .../193-r-cran-base64enc_0.1-3-3_arm64.deb ... 427s Unpacking r-cran-base64enc (0.1-3-3) ... 427s Selecting previously unselected package r-cran-digest. 427s Preparing to unpack .../194-r-cran-digest_0.6.34-1_arm64.deb ... 427s Unpacking r-cran-digest (0.6.34-1) ... 427s Selecting previously unselected package r-cran-rlang. 427s Preparing to unpack .../195-r-cran-rlang_1.1.3-1_arm64.deb ... 427s Unpacking r-cran-rlang (1.1.3-1) ... 427s Selecting previously unselected package r-cran-ellipsis. 427s Preparing to unpack .../196-r-cran-ellipsis_0.3.2-2_arm64.deb ... 427s Unpacking r-cran-ellipsis (0.3.2-2) ... 427s Selecting previously unselected package r-cran-fastmap. 427s Preparing to unpack .../197-r-cran-fastmap_1.1.1-1_arm64.deb ... 427s Unpacking r-cran-fastmap (1.1.1-1) ... 427s Selecting previously unselected package r-cran-htmltools. 427s Preparing to unpack .../198-r-cran-htmltools_0.5.7-1_arm64.deb ... 427s Unpacking r-cran-htmltools (0.5.7-1) ... 428s Selecting previously unselected package r-cran-evaluate. 428s Preparing to unpack .../199-r-cran-evaluate_0.23-1_all.deb ... 428s Unpacking r-cran-evaluate (0.23-1) ... 428s Selecting previously unselected package r-cran-xfun. 428s Preparing to unpack .../200-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 428s Unpacking r-cran-xfun (0.41+dfsg-1) ... 428s Selecting previously unselected package r-cran-highr. 428s Preparing to unpack .../201-r-cran-highr_0.10+dfsg-1_all.deb ... 428s Unpacking r-cran-highr (0.10+dfsg-1) ... 428s Selecting previously unselected package r-cran-yaml. 428s Preparing to unpack .../202-r-cran-yaml_2.3.8-1_arm64.deb ... 428s Unpacking r-cran-yaml (2.3.8-1) ... 428s Selecting previously unselected package libjs-mathjax. 428s Preparing to unpack .../203-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 428s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 434s Selecting previously unselected package r-cran-knitr. 434s Preparing to unpack .../204-r-cran-knitr_1.45+dfsg-1_all.deb ... 434s Unpacking r-cran-knitr (1.45+dfsg-1) ... 434s Selecting previously unselected package r-cran-cachem. 434s Preparing to unpack .../205-r-cran-cachem_1.0.8-1_arm64.deb ... 434s Unpacking r-cran-cachem (1.0.8-1) ... 434s Selecting previously unselected package r-cran-jquerylib. 434s Preparing to unpack .../206-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 434s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 434s Selecting previously unselected package r-cran-jsonlite. 434s Preparing to unpack .../207-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 434s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 435s Selecting previously unselected package r-cran-cli. 435s Preparing to unpack .../208-r-cran-cli_3.6.2-1_arm64.deb ... 435s Unpacking r-cran-cli (3.6.2-1) ... 435s Selecting previously unselected package r-cran-glue. 435s Preparing to unpack .../209-r-cran-glue_1.7.0-1_arm64.deb ... 435s Unpacking r-cran-glue (1.7.0-1) ... 435s Selecting previously unselected package r-cran-lifecycle. 435s Preparing to unpack .../210-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 435s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 435s Selecting previously unselected package r-cran-memoise. 435s Preparing to unpack .../211-r-cran-memoise_2.0.1-1_all.deb ... 435s Unpacking r-cran-memoise (2.0.1-1) ... 435s Selecting previously unselected package r-cran-mime. 436s Preparing to unpack .../212-r-cran-mime_0.12-1_arm64.deb ... 436s Unpacking r-cran-mime (0.12-1) ... 436s Selecting previously unselected package r-cran-fs. 436s Preparing to unpack .../213-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 436s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 436s Selecting previously unselected package r-cran-r6. 436s Preparing to unpack .../214-r-cran-r6_2.5.1-1_all.deb ... 436s Unpacking r-cran-r6 (2.5.1-1) ... 436s Selecting previously unselected package r-cran-rappdirs. 436s Preparing to unpack .../215-r-cran-rappdirs_0.3.3-1_arm64.deb ... 436s Unpacking r-cran-rappdirs (0.3.3-1) ... 436s Selecting previously unselected package r-cran-sass. 436s Preparing to unpack .../216-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 436s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 436s Selecting previously unselected package r-cran-bslib. 436s Preparing to unpack .../217-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 436s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 438s Selecting previously unselected package r-cran-fontawesome. 438s Preparing to unpack .../218-r-cran-fontawesome_0.5.2-1_all.deb ... 438s Unpacking r-cran-fontawesome (0.5.2-1) ... 438s Selecting previously unselected package r-cran-magrittr. 438s Preparing to unpack .../219-r-cran-magrittr_2.0.3-1_arm64.deb ... 438s Unpacking r-cran-magrittr (2.0.3-1) ... 439s Selecting previously unselected package r-cran-stringi. 439s Preparing to unpack .../220-r-cran-stringi_1.8.3-1_arm64.deb ... 439s Unpacking r-cran-stringi (1.8.3-1) ... 439s Selecting previously unselected package r-cran-vctrs. 439s Preparing to unpack .../221-r-cran-vctrs_0.6.5-1_arm64.deb ... 439s Unpacking r-cran-vctrs (0.6.5-1) ... 439s Selecting previously unselected package r-cran-stringr. 439s Preparing to unpack .../222-r-cran-stringr_1.5.1-1_all.deb ... 439s Unpacking r-cran-stringr (1.5.1-1) ... 439s Selecting previously unselected package r-cran-tinytex. 439s Preparing to unpack .../223-r-cran-tinytex_0.49-1_all.deb ... 439s Unpacking r-cran-tinytex (0.49-1) ... 440s Selecting previously unselected package libjs-modernizr. 440s Preparing to unpack .../224-libjs-modernizr_2.6.2+ds1-5_all.deb ... 440s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 440s Selecting previously unselected package r-cran-later. 440s Preparing to unpack .../225-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 440s Unpacking r-cran-later (1.3.2+dfsg-1) ... 440s Selecting previously unselected package r-cran-promises. 440s Preparing to unpack .../226-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 440s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 440s Selecting previously unselected package r-cran-httpuv. 440s Preparing to unpack .../227-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 440s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 440s Selecting previously unselected package r-cran-xtable. 440s Preparing to unpack .../228-r-cran-xtable_1%3a1.8-4-2_all.deb ... 440s Unpacking r-cran-xtable (1:1.8-4-2) ... 441s Selecting previously unselected package r-cran-sourcetools. 441s Preparing to unpack .../229-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 441s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 441s Selecting previously unselected package r-cran-withr. 441s Preparing to unpack .../230-r-cran-withr_2.5.0-1_all.deb ... 441s Unpacking r-cran-withr (2.5.0-1) ... 441s Selecting previously unselected package r-cran-commonmark. 441s Preparing to unpack .../231-r-cran-commonmark_1.9.1-1_arm64.deb ... 441s Unpacking r-cran-commonmark (1.9.1-1) ... 441s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 441s Preparing to unpack .../232-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 441s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 441s Selecting previously unselected package r-cran-shiny. 441s Preparing to unpack .../233-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 441s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 442s Selecting previously unselected package r-cran-rmarkdown. 442s Preparing to unpack .../234-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 442s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 443s Selecting previously unselected package r-cran-bookdown. 443s Preparing to unpack .../235-r-cran-bookdown_0.37+dfsg-1_all.deb ... 443s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 443s Selecting previously unselected package r-cran-biocmanager. 443s Preparing to unpack .../236-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 443s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 443s Selecting previously unselected package tex-common. 443s Preparing to unpack .../237-tex-common_6.18_all.deb ... 443s Unpacking tex-common (6.18) ... 443s Selecting previously unselected package t1utils. 443s Preparing to unpack .../238-t1utils_1.41-4build2_arm64.deb ... 443s Unpacking t1utils (1.41-4build2) ... 443s Selecting previously unselected package texlive-binaries. 444s Preparing to unpack .../239-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 444s Unpacking texlive-binaries (2023.20230311.66589-9) ... 445s Selecting previously unselected package texlive-base. 445s Preparing to unpack .../240-texlive-base_2023.20240207-1_all.deb ... 445s Unpacking texlive-base (2023.20240207-1) ... 451s Selecting previously unselected package texlive-latex-base. 451s Preparing to unpack .../241-texlive-latex-base_2023.20240207-1_all.deb ... 451s Unpacking texlive-latex-base (2023.20240207-1) ... 453s Selecting previously unselected package texlive-bibtex-extra. 453s Preparing to unpack .../242-texlive-bibtex-extra_2023.20240207-1_all.deb ... 453s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 472s Selecting previously unselected package r-bioc-biocstyle. 472s Preparing to unpack .../243-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 472s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 472s Selecting previously unselected package r-cran-bitops. 472s Preparing to unpack .../244-r-cran-bitops_1.0-7-1_arm64.deb ... 472s Unpacking r-cran-bitops (1.0-7-1) ... 472s Selecting previously unselected package r-cran-rcurl. 472s Preparing to unpack .../245-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 472s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 472s Selecting previously unselected package r-bioc-genomeinfodbdata. 473s Preparing to unpack .../246-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 473s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 473s Selecting previously unselected package r-bioc-genomeinfodb. 473s Preparing to unpack .../247-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 473s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 474s Selecting previously unselected package r-bioc-biostrings. 474s Preparing to unpack .../248-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 474s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 474s Selecting previously unselected package r-bioc-genomicranges. 474s Preparing to unpack .../249-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 474s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 475s Selecting previously unselected package r-cran-xml. 475s Preparing to unpack .../250-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 475s Unpacking r-cran-xml (3.99-0.16.1-1) ... 475s Selecting previously unselected package r-bioc-rhtslib. 475s Preparing to unpack .../251-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 475s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 476s Selecting previously unselected package r-bioc-rsamtools. 476s Preparing to unpack .../252-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 476s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 476s Selecting previously unselected package r-bioc-summarizedexperiment. 476s Preparing to unpack .../253-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 476s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 476s Selecting previously unselected package r-bioc-genomicalignments. 476s Preparing to unpack .../254-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 476s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 477s Selecting previously unselected package r-cran-rjson. 477s Preparing to unpack .../255-r-cran-rjson_0.2.21-1_arm64.deb ... 477s Unpacking r-cran-rjson (0.2.21-1) ... 477s Selecting previously unselected package r-cran-restfulr. 477s Preparing to unpack .../256-r-cran-restfulr_0.0.15-1_arm64.deb ... 477s Unpacking r-cran-restfulr (0.0.15-1) ... 477s Selecting previously unselected package r-bioc-rtracklayer. 477s Preparing to unpack .../257-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 477s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 478s Selecting previously unselected package r-bioc-bsgenome. 478s Preparing to unpack .../258-r-bioc-bsgenome_1.70.2-1_all.deb ... 478s Unpacking r-bioc-bsgenome (1.70.2-1) ... 478s Selecting previously unselected package r-cran-farver. 479s Preparing to unpack .../259-r-cran-farver_2.1.1-1_arm64.deb ... 479s Unpacking r-cran-farver (2.1.1-1) ... 479s Selecting previously unselected package r-cran-labeling. 479s Preparing to unpack .../260-r-cran-labeling_0.4.3-1_all.deb ... 479s Unpacking r-cran-labeling (0.4.3-1) ... 479s Selecting previously unselected package r-cran-colorspace. 479s Preparing to unpack .../261-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 479s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 479s Selecting previously unselected package r-cran-munsell. 479s Preparing to unpack .../262-r-cran-munsell_0.5.0-2build1_all.deb ... 479s Unpacking r-cran-munsell (0.5.0-2build1) ... 479s Selecting previously unselected package r-cran-rcolorbrewer. 480s Preparing to unpack .../263-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 480s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 480s Selecting previously unselected package r-cran-viridislite. 480s Preparing to unpack .../264-r-cran-viridislite_0.4.2-2_all.deb ... 480s Unpacking r-cran-viridislite (0.4.2-2) ... 480s Selecting previously unselected package r-cran-scales. 480s Preparing to unpack .../265-r-cran-scales_1.3.0-1_all.deb ... 480s Unpacking r-cran-scales (1.3.0-1) ... 480s Selecting previously unselected package r-cran-locfit. 480s Preparing to unpack .../266-r-cran-locfit_1.5-9.8-1_arm64.deb ... 480s Unpacking r-cran-locfit (1.5-9.8-1) ... 480s Selecting previously unselected package r-cran-gtools. 480s Preparing to unpack .../267-r-cran-gtools_3.9.5-1_arm64.deb ... 480s Unpacking r-cran-gtools (3.9.5-1) ... 480s Selecting previously unselected package r-cran-data.table. 480s Preparing to unpack .../268-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 480s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 481s Selecting previously unselected package r-cran-r.methodss3. 481s Preparing to unpack .../269-r-cran-r.methodss3_1.8.2-1_all.deb ... 481s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 481s Selecting previously unselected package r-cran-r.oo. 481s Preparing to unpack .../270-r-cran-r.oo_1.26.0-1_all.deb ... 481s Unpacking r-cran-r.oo (1.26.0-1) ... 481s Selecting previously unselected package r-cran-r.utils. 481s Preparing to unpack .../271-r-cran-r.utils_2.12.3-1_all.deb ... 481s Unpacking r-cran-r.utils (2.12.3-1) ... 481s Selecting previously unselected package r-bioc-sparsematrixstats. 481s Preparing to unpack .../272-r-bioc-sparsematrixstats_1.14.0+dfsg-1_arm64.deb ... 481s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 482s Selecting previously unselected package r-bioc-delayedmatrixstats. 482s Preparing to unpack .../273-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 482s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 482s Selecting previously unselected package r-cran-permute. 482s Preparing to unpack .../274-r-cran-permute_0.9-7-1_all.deb ... 482s Unpacking r-cran-permute (0.9-7-1) ... 482s Selecting previously unselected package r-cran-statmod. 482s Preparing to unpack .../275-r-cran-statmod_1.5.0-1_arm64.deb ... 482s Unpacking r-cran-statmod (1.5.0-1) ... 482s Selecting previously unselected package r-bioc-limma. 482s Preparing to unpack .../276-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 482s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 483s Selecting previously unselected package r-bioc-rhdf5lib. 483s Preparing to unpack .../277-r-bioc-rhdf5lib_1.24.2+dfsg-1_arm64.deb ... 483s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 483s Selecting previously unselected package r-bioc-rhdf5filters. 483s Preparing to unpack .../278-r-bioc-rhdf5filters_1.14.1+dfsg-3_arm64.deb ... 483s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 483s Selecting previously unselected package r-bioc-rhdf5. 483s Preparing to unpack .../279-r-bioc-rhdf5_2.46.1+dfsg-1_arm64.deb ... 483s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 483s Selecting previously unselected package r-bioc-hdf5array. 483s Preparing to unpack .../280-r-bioc-hdf5array_1.30.1-1_arm64.deb ... 483s Unpacking r-bioc-hdf5array (1.30.1-1) ... 484s Selecting previously unselected package r-bioc-bsseq. 484s Preparing to unpack .../281-r-bioc-bsseq_1.38.0+dfsg-1_arm64.deb ... 484s Unpacking r-bioc-bsseq (1.38.0+dfsg-1) ... 484s Selecting previously unselected package r-cran-backports. 484s Preparing to unpack .../282-r-cran-backports_1.4.1-1_arm64.deb ... 484s Unpacking r-cran-backports (1.4.1-1) ... 484s Selecting previously unselected package r-cran-base64url. 484s Preparing to unpack .../283-r-cran-base64url_1.4-2build1_arm64.deb ... 484s Unpacking r-cran-base64url (1.4-2build1) ... 484s Selecting previously unselected package r-cran-brew. 484s Preparing to unpack .../284-r-cran-brew_1.0-10-1_all.deb ... 484s Unpacking r-cran-brew (1.0-10-1) ... 484s Selecting previously unselected package r-cran-checkmate. 484s Preparing to unpack .../285-r-cran-checkmate_2.3.1-1_arm64.deb ... 484s Unpacking r-cran-checkmate (2.3.1-1) ... 485s Selecting previously unselected package r-cran-pkgconfig. 485s Preparing to unpack .../286-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 485s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 485s Selecting previously unselected package r-cran-hms. 485s Preparing to unpack .../287-r-cran-hms_1.1.3-1_all.deb ... 485s Unpacking r-cran-hms (1.1.3-1) ... 485s Selecting previously unselected package r-cran-prettyunits. 485s Preparing to unpack .../288-r-cran-prettyunits_1.2.0-1_all.deb ... 485s Unpacking r-cran-prettyunits (1.2.0-1) ... 485s Selecting previously unselected package r-cran-progress. 485s Preparing to unpack .../289-r-cran-progress_1.2.3-1_all.deb ... 485s Unpacking r-cran-progress (1.2.3-1) ... 485s Selecting previously unselected package r-cran-batchtools. 485s Preparing to unpack .../290-r-cran-batchtools_0.9.17+dfsg-1_arm64.deb ... 485s Unpacking r-cran-batchtools (0.9.17+dfsg-1) ... 485s Selecting previously unselected package r-cran-brio. 486s Preparing to unpack .../291-r-cran-brio_1.1.4-1_arm64.deb ... 486s Unpacking r-cran-brio (1.1.4-1) ... 486s Selecting previously unselected package r-cran-ps. 486s Preparing to unpack .../292-r-cran-ps_1.7.6-1_arm64.deb ... 486s Unpacking r-cran-ps (1.7.6-1) ... 486s Selecting previously unselected package r-cran-processx. 486s Preparing to unpack .../293-r-cran-processx_3.8.3-1_arm64.deb ... 486s Unpacking r-cran-processx (3.8.3-1) ... 486s Selecting previously unselected package r-cran-callr. 486s Preparing to unpack .../294-r-cran-callr_3.7.3-2_all.deb ... 486s Unpacking r-cran-callr (3.7.3-2) ... 486s Selecting previously unselected package r-cran-desc. 486s Preparing to unpack .../295-r-cran-desc_1.4.3-1_all.deb ... 486s Unpacking r-cran-desc (1.4.3-1) ... 487s Selecting previously unselected package r-cran-diffobj. 487s Preparing to unpack .../296-r-cran-diffobj_0.3.5-1_arm64.deb ... 487s Unpacking r-cran-diffobj (0.3.5-1) ... 487s Selecting previously unselected package r-cran-iterators. 487s Preparing to unpack .../297-r-cran-iterators_1.0.14-1_all.deb ... 487s Unpacking r-cran-iterators (1.0.14-1) ... 487s Selecting previously unselected package r-cran-foreach. 487s Preparing to unpack .../298-r-cran-foreach_1.5.2-1_all.deb ... 487s Unpacking r-cran-foreach (1.5.2-1) ... 487s Selecting previously unselected package r-cran-doparallel. 487s Preparing to unpack .../299-r-cran-doparallel_1.0.17-1_all.deb ... 487s Unpacking r-cran-doparallel (1.0.17-1) ... 488s Selecting previously unselected package r-cran-fansi. 488s Preparing to unpack .../300-r-cran-fansi_1.0.5-1_arm64.deb ... 488s Unpacking r-cran-fansi (1.0.5-1) ... 488s Selecting previously unselected package r-cran-utf8. 488s Preparing to unpack .../301-r-cran-utf8_1.2.4-1_arm64.deb ... 488s Unpacking r-cran-utf8 (1.2.4-1) ... 488s Selecting previously unselected package r-cran-pillar. 488s Preparing to unpack .../302-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 488s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 488s Selecting previously unselected package r-cran-pkgbuild. 488s Preparing to unpack .../303-r-cran-pkgbuild_1.4.3-1_all.deb ... 488s Unpacking r-cran-pkgbuild (1.4.3-1) ... 489s Selecting previously unselected package r-cran-rprojroot. 489s Preparing to unpack .../304-r-cran-rprojroot_2.0.4-1_all.deb ... 489s Unpacking r-cran-rprojroot (2.0.4-1) ... 489s Selecting previously unselected package r-cran-pkgload. 489s Preparing to unpack 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group f95) doesn't exist 510s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 510s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 510s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 510s Setting up r-cran-bitops (1.0-7-1) ... 510s Setting up r-cran-rprojroot (2.0.4-1) ... 510s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 510s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 510s Setting up r-cran-fastmap (1.1.1-1) ... 510s Setting up r-cran-r.methodss3 (1.8.2-1) ... 510s Setting up r-bioc-biobase (2.62.0-1) ... 510s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 511s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 511s Setting up r-cran-utf8 (1.2.4-1) ... 511s Setting up r-cran-brew (1.0-10-1) ... 511s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 511s Setting up r-cran-stringi (1.8.3-1) ... 511s Setting up 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(1.14.0+dfsg-1) ... 511s Setting up r-cran-vctrs (0.6.5-1) ... 511s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 511s Setting up r-cran-ellipsis (0.3.2-2) ... 511s Setting up r-cran-base64url (1.4-2build1) ... 511s Setting up r-base-dev (4.3.3-2build1) ... 511s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 511s Setting up r-cran-stringr (1.5.1-1) ... 511s Setting up r-bioc-biocparallel (1.36.0-1) ... 511s Setting up r-cran-callr (3.7.3-2) ... 511s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 511s Setting up r-cran-desc (1.4.3-1) ... 511s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 511s Setting up r-cran-munsell (0.5.0-2build1) ... 511s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 511s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 511s Setting up r-cran-r.oo (1.26.0-1) ... 511s Setting up texlive-bibtex-extra (2023.20240207-1) ... 511s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 511s Setting up r-cran-hms (1.1.3-1) ... 511s Setting up r-cran-scales (1.3.0-1) ... 511s Setting up r-cran-memoise (2.0.1-1) ... 511s Setting up r-cran-promises (1.2.1+dfsg-1) ... 511s Setting up r-cran-htmltools (0.5.7-1) ... 511s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 511s Setting up r-bioc-xvector (0.42.0-1) ... 511s Setting up r-cran-pkgbuild (1.4.3-1) ... 511s Setting up r-cran-sass (0.4.8+dfsg-1) ... 511s Setting up r-cran-progress (1.2.3-1) ... 511s Setting up r-cran-pkgload (1.3.4-1) ... 511s Setting up r-cran-r.utils (2.12.3-1) ... 511s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 511s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 511s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 511s Setting up r-cran-rematch2 (2.1.2-2build1) ... 511s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 511s Setting up r-cran-fontawesome (0.5.2-1) ... 511s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 511s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 511s Setting up r-cran-waldo (0.5.2-1build1) ... 511s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 511s Setting up r-cran-batchtools (0.9.17+dfsg-1) ... 511s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 511s Setting up r-bioc-hdf5array (1.30.1-1) ... 511s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 511s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 511s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 511s Setting up r-cran-testthat (3.2.1-1) ... 511s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 511s Setting up r-bioc-beachmat (2.18.1+ds-1) ... 511s Setting up r-bioc-genomicalignments (1.38.2-1) ... 511s Setting up r-cran-bookdown (0.37+dfsg-1) ... 511s Setting up r-bioc-rtracklayer (1.62.0-1) ... 511s Setting up r-bioc-bsgenome (1.70.2-1) ... 511s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 511s Setting up r-bioc-bsseq (1.38.0+dfsg-1) ... 511s Setting up autopkgtest-satdep (0) ... 511s Processing triggers for man-db (2.12.0-3) ... 516s Processing triggers for install-info (7.1-3) ... 516s Processing triggers for libc-bin (2.39-0ubuntu2) ... 516s Processing triggers for tex-common (6.18) ... 518s Running updmap-sys. This may take some time... done. 518s Running mktexlsr /var/lib/texmf ... done. 519s Building format(s) --all. 652s This may take some time... done. 693s (Reading database ... 127331 files and directories currently installed.) 693s Removing autopkgtest-satdep (0) ... 695s autopkgtest [17:36:01]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 695s autopkgtest [17:36:01]: test pkg-r-autopkgtest: [----------------------- 695s Test: Try to load the R library bsseq 696s 696s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 696s Copyright (C) 2024 The R Foundation for Statistical Computing 696s Platform: aarch64-unknown-linux-gnu (64-bit) 696s 696s R is free software and comes with ABSOLUTELY NO WARRANTY. 696s You are welcome to redistribute it under certain conditions. 696s Type 'license()' or 'licence()' for distribution details. 696s 696s R is a collaborative project with many contributors. 696s Type 'contributors()' for more information and 696s 'citation()' on how to cite R or R packages in publications. 696s 696s Type 'demo()' for some demos, 'help()' for on-line help, or 696s 'help.start()' for an HTML browser interface to help. 696s Type 'q()' to quit R. 696s 696s > library('bsseq') 696s Loading required package: BiocGenerics 697s 697s Attaching package: ‘BiocGenerics’ 697s 697s The following objects are masked from ‘package:stats’: 697s 697s IQR, mad, sd, var, xtabs 697s 697s The following objects are masked from ‘package:base’: 697s 697s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 697s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 697s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 697s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 697s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 697s table, tapply, union, unique, unsplit, which.max, which.min 697s 697s Loading required package: GenomicRanges 697s Loading required package: stats4 698s Loading required package: S4Vectors 701s 701s Attaching package: ‘S4Vectors’ 701s 701s The following object is masked from ‘package:utils’: 701s 701s findMatches 701s 701s The following objects are masked from ‘package:base’: 701s 701s expand.grid, I, unname 701s 701s Loading required package: IRanges 704s Loading required package: GenomeInfoDb 708s Loading required package: SummarizedExperiment 708s Loading required package: MatrixGenerics 708s Loading required package: matrixStats 708s 708s Attaching package: ‘MatrixGenerics’ 708s 708s The following objects are masked from ‘package:matrixStats’: 708s 708s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 708s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 708s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 708s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 708s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 708s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 708s colWeightedMeans, colWeightedMedians, colWeightedSds, 708s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 708s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 708s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 708s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 708s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 708s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 708s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 708s rowWeightedSds, rowWeightedVars 708s 708s Loading required package: Biobase 709s Welcome to Bioconductor 709s 709s Vignettes contain introductory material; view with 709s 'browseVignettes()'. To cite Bioconductor, see 709s 'citation("Biobase")', and for packages 'citation("pkgname")'. 709s 710s 710s Attaching package: ‘Biobase’ 710s 710s The following object is masked from ‘package:MatrixGenerics’: 710s 710s rowMedians 710s 710s The following objects are masked from ‘package:matrixStats’: 710s 710s anyMissing, rowMedians 710s 747s > 747s > 747s Other tests are currently unsupported! 747s They will be progressively added. 747s autopkgtest [17:36:53]: test pkg-r-autopkgtest: -----------------------] 748s pkg-r-autopkgtest PASS 748s autopkgtest [17:36:54]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 749s autopkgtest [17:36:55]: @@@@@@@@@@@@@@@@@@@@ summary 749s pkg-r-autopkgtest PASS 766s Creating nova instance adt-noble-arm64-r-bioc-bsseq-20240316-172426-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...