0s autopkgtest [17:24:21]: starting date and time: 2024-03-16 17:24:21+0000 0s autopkgtest [17:24:21]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:24:21]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qs8r4i1u/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-bsgenome --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-25.secgroup --name adt-noble-arm64-r-bioc-bsgenome-20240316-172421-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 89s autopkgtest [17:25:50]: testbed dpkg architecture: arm64 91s autopkgtest [17:25:52]: testbed apt version: 2.7.12 91s autopkgtest [17:25:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 93s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 94s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 95s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 95s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 95s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 95s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 95s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 95s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 95s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 95s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 95s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 95s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 95s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 97s Fetched 9060 kB in 3s (2764 kB/s) 97s Reading package lists... 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s Calculating upgrade... 102s The following packages will be REMOVED: 102s libglib2.0-0 libssl3 102s The following NEW packages will be installed: 102s libglib2.0-0t64 libssl3t64 xdg-user-dirs 102s The following packages have been kept back: 102s curl 102s The following packages will be upgraded: 102s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 102s ubuntu-minimal ubuntu-standard 102s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 102s Need to get 4613 kB of archives. 102s After this operation, 211 kB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 103s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 103s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 103s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 103s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 103s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 103s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 103s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 103s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 103s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 103s Fetched 4613 kB in 1s (6806 kB/s) 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 104s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 104s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 104s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 104s udisks2 depends on libglib2.0-0 (>= 2.77.0). 104s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 104s python3-gi depends on libglib2.0-0 (>= 2.77.0). 104s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 104s netplan.io depends on libglib2.0-0 (>= 2.70.0). 104s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 104s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 104s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 104s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 104s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 104s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 104s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 104s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 104s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 104s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 104s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 104s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 104s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 104s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 104s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s fwupd depends on libglib2.0-0 (>= 2.79.0). 104s bolt depends on libglib2.0-0 (>= 2.56.0). 104s 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 104s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 104s Selecting previously unselected package libglib2.0-0t64:arm64. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 104s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 104s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 104s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 104s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 104s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 104s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 104s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 104s wget depends on libssl3 (>= 3.0.0). 104s u-boot-tools depends on libssl3 (>= 3.0.0). 104s tnftp depends on libssl3 (>= 3.0.0). 104s tcpdump depends on libssl3 (>= 3.0.0). 104s systemd-resolved depends on libssl3 (>= 3.0.0). 104s systemd depends on libssl3 (>= 3.0.0). 104s sudo depends on libssl3 (>= 3.0.0). 104s sbsigntool depends on libssl3 (>= 3.0.0). 104s rsync depends on libssl3 (>= 3.0.0). 104s python3-cryptography depends on libssl3 (>= 3.0.0). 104s openssh-server depends on libssl3 (>= 3.0.10). 104s openssh-client depends on libssl3 (>= 3.0.10). 104s mtd-utils depends on libssl3 (>= 3.0.0). 104s mokutil depends on libssl3 (>= 3.0.0). 104s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 104s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 104s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 104s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 104s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 104s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 104s libnvme1 depends on libssl3 (>= 3.0.0). 104s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 104s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 104s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 104s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 104s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 104s kmod depends on libssl3 (>= 3.0.0). 104s dhcpcd-base depends on libssl3 (>= 3.0.0). 104s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 104s 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 104s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 104s Selecting previously unselected package libssl3t64:arm64. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 104s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 104s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 104s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 104s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 104s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 104s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 104s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 104s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 104s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 104s Unpacking ubuntu-minimal (1.536) over (1.535) ... 104s Selecting previously unselected package xdg-user-dirs. 105s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 105s Unpacking xdg-user-dirs (0.18-1) ... 105s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 105s Unpacking ubuntu-standard (1.536) over (1.535) ... 105s Setting up ubuntu-minimal (1.536) ... 105s Setting up xdg-user-dirs (0.18-1) ... 105s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 105s Setting up libtirpc-common (1.3.4+ds-1.1) ... 105s Setting up ubuntu-standard (1.536) ... 105s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 105s No schema files found: doing nothing. 105s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 105s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 105s Setting up openssl (3.0.13-0ubuntu1) ... 105s Setting up readline-common (8.2-3.1) ... 105s Processing triggers for man-db (2.12.0-3) ... 106s Processing triggers for install-info (7.1-3) ... 106s Processing triggers for libc-bin (2.39-0ubuntu2) ... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 109s sh: Attempting to set up Debian/Ubuntu apt sources automatically 109s sh: Distribution appears to be Ubuntu 109s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s eatmydata is already the newest version (131-1). 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s dbus is already the newest version (1.14.10-4ubuntu1). 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s rng-tools-debian is already the newest version (2.4). 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s The following packages will be REMOVED: 113s cloud-init* python3-configobj* python3-debconf* 114s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 114s After this operation, 3252 kB disk space will be freed. 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 114s Removing cloud-init (24.1.1-0ubuntu1) ... 117s Removing python3-configobj (5.0.8-3) ... 120s Removing python3-debconf (1.5.86) ... 121s Processing triggers for man-db (2.12.0-3) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 122s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 123s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 123s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 123s invoke-rc.d: policy-rc.d denied execution of try-restart. 123s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s linux-generic is already the newest version (6.8.0-11.11+1). 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 125s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 125s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 133s Reading package lists... 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 135s Calculating upgrade... 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s Reading package lists... 136s Building dependency tree... 136s Reading state information... 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s autopkgtest [17:26:39]: rebooting testbed after setup commands that affected boot 326s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 337s autopkgtest [17:29:58]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 340s autopkgtest [17:30:01]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-bsgenome 342s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-bsgenome 1.70.2-1 (dsc) [2284 B] 342s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-bsgenome 1.70.2-1 (tar) [5909 kB] 342s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-bsgenome 1.70.2-1 (diff) [10.1 kB] 343s gpgv: Signature made Tue Feb 13 12:40:36 2024 UTC 343s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 343s gpgv: issuer "tille@debian.org" 343s gpgv: Can't check signature: No public key 343s dpkg-source: warning: cannot verify inline signature for ./r-bioc-bsgenome_1.70.2-1.dsc: no acceptable signature found 343s autopkgtest [17:30:04]: testing package r-bioc-bsgenome version 1.70.2-1 343s autopkgtest [17:30:04]: build not needed 345s autopkgtest [17:30:06]: test pkg-r-autopkgtest: preparing testbed 346s Reading package lists... 346s Building dependency tree... 346s Reading state information... 347s Starting pkgProblemResolver with broken count: 0 347s Starting 2 pkgProblemResolver with broken count: 0 347s Done 348s The following additional packages will be installed: 348s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 348s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 348s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 348s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 348s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 348s libasan8 libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev 348s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 348s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 348s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 348s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 348s libjpeg8-dev liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 348s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 348s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 348s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 348s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data 348s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 348s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 348s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 348s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 348s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 348s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 348s r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 348s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 348s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 348s r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-codetools r-cran-cpp11 348s r-cran-crayon r-cran-formatr r-cran-futile.logger r-cran-futile.options 348s r-cran-lambda.r r-cran-lattice r-cran-littler r-cran-matrix 348s r-cran-matrixstats r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-runit 348s r-cran-snow r-cran-xml r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils 348s zip zlib1g-dev 348s Suggested packages: 348s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 348s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 348s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 348s liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev 348s libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev 348s libboost-contract1.83-dev libboost-coroutine1.83-dev 348s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 348s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 348s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 348s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 348s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 348s libboost-numpy1.83-dev libboost-program-options1.83-dev 348s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 348s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 348s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 348s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 348s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 348s glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 348s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 348s texlive-base texlive-latex-base texlive-plain-generic 348s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 348s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all 348s r-bioc-biocstyle r-cran-knitr r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 348s r-bioc-annotate r-cran-testthat r-cran-rmarkdown r-cran-foreach 348s r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation r-bioc-shortread 348s r-cran-batchtools r-cran-data.table r-bioc-genomicfeatures r-bioc-hdf5array 348s r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-cran-r.utils 348s r-bioc-edger r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-keggrest 348s r-cran-digest r-bioc-sparsematrixstats r-bioc-limma r-bioc-org.hs.eg.db 348s r-bioc-graph r-cran-jsonlite r-bioc-rhdf5 r-cran-rstudioapi r-cran-shiny 348s r-cran-getopt r-cran-rmpi r-cran-rlecuyer 348s Recommended packages: 348s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended 348s r-doc-html r-bioc-biocversion r-cran-remotes r-cran-rmarkdown 348s r-cran-testthat r-cran-withr r-cran-curl r-cran-knitr r-cran-bench 348s r-cran-brio r-cran-callr r-cran-cli r-cran-covr r-cran-decor r-cran-desc 348s r-cran-ggplot2 r-cran-glue r-cran-lobstr r-cran-mockery r-cran-progress 348s r-cran-scales r-cran-rcpp r-cran-tibble r-cran-vctrs r-cran-testit 348s r-cran-survival r-cran-base64enc r-cran-markdown r-cran-r.devices 348s r-cran-r.rsp libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 348s x11-utils x11-xserver-utils 348s The following NEW packages will be installed: 348s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 348s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 348s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 348s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 348s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 348s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 348s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 348s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 348s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 348s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 348s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 348s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 348s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 348s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 348s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 348s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data 348s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 348s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 348s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 348s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 348s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 348s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 348s r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 348s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 348s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 348s r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-codetools r-cran-cpp11 348s r-cran-crayon r-cran-formatr r-cran-futile.logger r-cran-futile.options 348s r-cran-lambda.r r-cran-lattice r-cran-littler r-cran-matrix 348s r-cran-matrixstats r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-runit 348s r-cran-snow r-cran-xml r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils 348s zip zlib1g-dev 348s 0 upgraded, 152 newly installed, 0 to remove and 0 not upgraded. 348s Need to get 220 MB/220 MB of archives. 348s After this operation, 692 MB of additional disk space will be used. 348s Get:1 /tmp/autopkgtest.9QuVbz/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [748 B] 348s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 348s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 348s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 348s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 348s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 348s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 349s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 349s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 349s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 349s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 349s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 349s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 349s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 349s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 349s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 349s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 349s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 349s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 349s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 349s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 349s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 349s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 349s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 349s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 350s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 350s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 350s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 350s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 350s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 350s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 350s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 350s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 350s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 350s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 350s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 350s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 350s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 350s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 350s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 350s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 350s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 350s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 350s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 350s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 350s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 350s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 350s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 350s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 350s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 351s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 351s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 351s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 351s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 351s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 351s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 351s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 351s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 351s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 351s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 351s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 351s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 351s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 351s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 351s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 351s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 351s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 351s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 351s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 351s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 351s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 351s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 351s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 351s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 351s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 351s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 351s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 351s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 351s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 351s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 351s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 351s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 351s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 351s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 351s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 351s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 351s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 351s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 351s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 351s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 351s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 351s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 351s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 351s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 351s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 351s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 351s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 352s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 352s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 352s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 352s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 352s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 352s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 352s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 352s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 353s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 353s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 353s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 353s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 353s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 353s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 353s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 353s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 353s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 353s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 353s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 353s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 353s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 353s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 353s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 353s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 353s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 354s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 354s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 354s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 354s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 354s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 354s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 354s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 354s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 355s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 355s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 355s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 355s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 355s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 355s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 355s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 356s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 357s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 357s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 357s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 357s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 357s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 357s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 357s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 357s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 357s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 357s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 357s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 357s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 357s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 357s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 363s Preconfiguring packages ... 364s Fetched 220 MB in 9s (23.7 MB/s) 364s Selecting previously unselected package libc-dev-bin. 364s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 364s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 364s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 364s Selecting previously unselected package linux-libc-dev:arm64. 365s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 365s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 365s Selecting previously unselected package libcrypt-dev:arm64. 365s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 365s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 365s Selecting previously unselected package libtirpc-dev:arm64. 365s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 365s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 365s Selecting previously unselected package libnsl-dev:arm64. 365s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 365s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 365s Selecting previously unselected package rpcsvc-proto. 366s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 366s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 366s Selecting previously unselected package libc6-dev:arm64. 366s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 366s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 366s Selecting previously unselected package libisl23:arm64. 366s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 366s Unpacking libisl23:arm64 (0.26-3) ... 366s Selecting previously unselected package libmpc3:arm64. 366s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 366s Unpacking libmpc3:arm64 (1.3.1-1) ... 366s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 366s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 366s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 366s Selecting previously unselected package cpp-13. 366s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 366s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 366s Selecting previously unselected package cpp-aarch64-linux-gnu. 366s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 366s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 366s Selecting previously unselected package cpp. 366s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 366s Unpacking cpp (4:13.2.0-7ubuntu1) ... 366s Selecting previously unselected package libcc1-0:arm64. 366s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 366s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 366s Selecting previously unselected package libgomp1:arm64. 366s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 366s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 366s Selecting previously unselected package libitm1:arm64. 366s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 366s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 366s Selecting previously unselected package libatomic1:arm64. 366s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 366s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 366s Selecting previously unselected package libasan8:arm64. 367s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 367s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 367s Selecting previously unselected package liblsan0:arm64. 367s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 367s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 367s Selecting previously unselected package libtsan2:arm64. 367s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 367s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 367s Selecting previously unselected package libubsan1:arm64. 367s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 367s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 367s Selecting previously unselected package libhwasan0:arm64. 367s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 367s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 367s Selecting previously unselected package libgcc-13-dev:arm64. 367s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 367s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 367s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 367s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 367s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 368s Selecting previously unselected package gcc-13. 368s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 368s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 368s Selecting previously unselected package gcc-aarch64-linux-gnu. 368s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 368s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 368s Selecting previously unselected package gcc. 368s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 368s Unpacking gcc (4:13.2.0-7ubuntu1) ... 368s Selecting previously unselected package libstdc++-13-dev:arm64. 368s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 368s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 369s Selecting previously unselected package g++-13-aarch64-linux-gnu. 369s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 369s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 369s Selecting previously unselected package g++-13. 369s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 369s Unpacking g++-13 (13.2.0-17ubuntu2) ... 369s Selecting previously unselected package g++-aarch64-linux-gnu. 369s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 369s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 369s Selecting previously unselected package g++. 369s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 369s Unpacking g++ (4:13.2.0-7ubuntu1) ... 369s Selecting previously unselected package build-essential. 369s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 369s Unpacking build-essential (12.10ubuntu1) ... 369s Selecting previously unselected package dctrl-tools. 369s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 369s Unpacking dctrl-tools (2.24-3build2) ... 369s Selecting previously unselected package fonts-dejavu-mono. 369s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 369s Unpacking fonts-dejavu-mono (2.37-8) ... 369s Selecting previously unselected package fonts-dejavu-core. 369s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 369s Unpacking fonts-dejavu-core (2.37-8) ... 369s Selecting previously unselected package fontconfig-config. 369s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 370s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 370s Selecting previously unselected package libfontconfig1:arm64. 370s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 370s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 370s Selecting previously unselected package fontconfig. 370s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 370s Unpacking fontconfig (2.15.0-1ubuntu1) ... 370s Selecting previously unselected package libgfortran5:arm64. 370s Preparing to unpack .../039-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 370s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 370s Selecting previously unselected package libgfortran-13-dev:arm64. 370s Preparing to unpack .../040-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 370s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 370s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 370s Preparing to unpack .../041-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 370s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 370s Selecting previously unselected package gfortran-13. 370s Preparing to unpack .../042-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 370s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 370s Selecting previously unselected package gfortran-aarch64-linux-gnu. 370s Preparing to unpack .../043-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 370s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 370s Selecting previously unselected package gfortran. 370s Preparing to unpack .../044-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 370s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 370s Selecting previously unselected package icu-devtools. 370s Preparing to unpack .../045-icu-devtools_74.2-1ubuntu1_arm64.deb ... 370s Unpacking icu-devtools (74.2-1ubuntu1) ... 370s Selecting previously unselected package libblas3:arm64. 370s Preparing to unpack .../046-libblas3_3.12.0-3_arm64.deb ... 370s Unpacking libblas3:arm64 (3.12.0-3) ... 370s Selecting previously unselected package libblas-dev:arm64. 370s Preparing to unpack .../047-libblas-dev_3.12.0-3_arm64.deb ... 370s Unpacking libblas-dev:arm64 (3.12.0-3) ... 371s Selecting previously unselected package libboost1.83-dev:arm64. 371s Preparing to unpack .../048-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 371s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 372s Selecting previously unselected package libboost-dev:arm64. 373s Preparing to unpack .../049-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 373s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 373s Selecting previously unselected package libbz2-dev:arm64. 373s Preparing to unpack .../050-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 373s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 373s Selecting previously unselected package libpixman-1-0:arm64. 373s Preparing to unpack .../051-libpixman-1-0_0.42.2-1_arm64.deb ... 373s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 373s Selecting previously unselected package libxcb-render0:arm64. 373s Preparing to unpack .../052-libxcb-render0_1.15-1_arm64.deb ... 373s Unpacking libxcb-render0:arm64 (1.15-1) ... 373s Selecting previously unselected package libxcb-shm0:arm64. 373s Preparing to unpack .../053-libxcb-shm0_1.15-1_arm64.deb ... 373s Unpacking libxcb-shm0:arm64 (1.15-1) ... 373s Selecting previously unselected package libxrender1:arm64. 373s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 373s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 373s Selecting previously unselected package libcairo2:arm64. 373s Preparing to unpack .../055-libcairo2_1.18.0-1_arm64.deb ... 373s Unpacking libcairo2:arm64 (1.18.0-1) ... 373s Selecting previously unselected package libdatrie1:arm64. 373s Preparing to unpack .../056-libdatrie1_0.2.13-3_arm64.deb ... 373s Unpacking libdatrie1:arm64 (0.2.13-3) ... 373s Selecting previously unselected package libdeflate0:arm64. 373s Preparing to unpack .../057-libdeflate0_1.19-1_arm64.deb ... 373s Unpacking libdeflate0:arm64 (1.19-1) ... 373s Selecting previously unselected package libgraphite2-3:arm64. 373s Preparing to unpack .../058-libgraphite2-3_1.3.14-2_arm64.deb ... 373s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 373s Selecting previously unselected package libharfbuzz0b:arm64. 373s Preparing to unpack .../059-libharfbuzz0b_8.3.0-2_arm64.deb ... 373s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 374s Selecting previously unselected package x11-common. 374s Preparing to unpack .../060-x11-common_1%3a7.7+23ubuntu2_all.deb ... 374s Unpacking x11-common (1:7.7+23ubuntu2) ... 374s Selecting previously unselected package libice6:arm64. 374s Preparing to unpack .../061-libice6_2%3a1.0.10-1build2_arm64.deb ... 374s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 374s Selecting previously unselected package libicu-dev:arm64. 374s Preparing to unpack .../062-libicu-dev_74.2-1ubuntu1_arm64.deb ... 374s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 374s Selecting previously unselected package libjpeg-turbo8:arm64. 374s Preparing to unpack .../063-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 374s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 374s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 374s Preparing to unpack .../064-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 374s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 374s Selecting previously unselected package libjpeg8:arm64. 374s Preparing to unpack .../065-libjpeg8_8c-2ubuntu11_arm64.deb ... 374s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 374s Selecting previously unselected package libjpeg8-dev:arm64. 374s Preparing to unpack .../066-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 374s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 374s Selecting previously unselected package libjpeg-dev:arm64. 374s Preparing to unpack .../067-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 374s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 374s Selecting previously unselected package liblapack3:arm64. 374s Preparing to unpack .../068-liblapack3_3.12.0-3_arm64.deb ... 374s Unpacking liblapack3:arm64 (3.12.0-3) ... 374s Selecting previously unselected package liblapack-dev:arm64. 374s Preparing to unpack .../069-liblapack-dev_3.12.0-3_arm64.deb ... 374s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 375s Selecting previously unselected package liblerc4:arm64. 375s Preparing to unpack .../070-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 375s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 375s Selecting previously unselected package libncurses-dev:arm64. 375s Preparing to unpack .../071-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 375s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 375s Selecting previously unselected package libthai-data. 375s Preparing to unpack .../072-libthai-data_0.1.29-2_all.deb ... 375s Unpacking libthai-data (0.1.29-2) ... 375s Selecting previously unselected package libthai0:arm64. 375s Preparing to unpack .../073-libthai0_0.1.29-2_arm64.deb ... 375s Unpacking libthai0:arm64 (0.1.29-2) ... 375s Selecting previously unselected package libpango-1.0-0:arm64. 375s Preparing to unpack .../074-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 375s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 375s Selecting previously unselected package libpangoft2-1.0-0:arm64. 375s Preparing to unpack .../075-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 375s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 375s Selecting previously unselected package libpangocairo-1.0-0:arm64. 375s Preparing to unpack .../076-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 375s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 375s Selecting previously unselected package libpaper1:arm64. 375s Preparing to unpack .../077-libpaper1_1.1.29_arm64.deb ... 375s Unpacking libpaper1:arm64 (1.1.29) ... 375s Selecting previously unselected package libpaper-utils. 375s Preparing to unpack .../078-libpaper-utils_1.1.29_arm64.deb ... 375s Unpacking libpaper-utils (1.1.29) ... 375s Selecting previously unselected package libpcre2-16-0:arm64. 375s Preparing to unpack .../079-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 375s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 375s Selecting previously unselected package libpcre2-32-0:arm64. 375s Preparing to unpack .../080-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 375s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 375s Selecting previously unselected package libpcre2-posix3:arm64. 375s Preparing to unpack .../081-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 375s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 375s Selecting previously unselected package libpcre2-dev:arm64. 375s Preparing to unpack .../082-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 375s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 375s Selecting previously unselected package libpkgconf3:arm64. 375s Preparing to unpack .../083-libpkgconf3_1.8.1-2_arm64.deb ... 375s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 375s Selecting previously unselected package zlib1g-dev:arm64. 375s Preparing to unpack .../084-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 375s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 375s Selecting previously unselected package libpng-dev:arm64. 375s Preparing to unpack .../085-libpng-dev_1.6.43-1_arm64.deb ... 375s Unpacking libpng-dev:arm64 (1.6.43-1) ... 375s Selecting previously unselected package libreadline-dev:arm64. 375s Preparing to unpack .../086-libreadline-dev_8.2-3_arm64.deb ... 375s Unpacking libreadline-dev:arm64 (8.2-3) ... 376s Selecting previously unselected package libsharpyuv0:arm64. 376s Preparing to unpack .../087-libsharpyuv0_1.3.2-0.4_arm64.deb ... 376s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 376s Selecting previously unselected package libsm6:arm64. 376s Preparing to unpack .../088-libsm6_2%3a1.2.3-1build2_arm64.deb ... 376s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 376s Selecting previously unselected package libtcl8.6:arm64. 376s Preparing to unpack .../089-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 376s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 376s Selecting previously unselected package libjbig0:arm64. 376s Preparing to unpack .../090-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 376s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 376s Selecting previously unselected package libwebp7:arm64. 376s Preparing to unpack .../091-libwebp7_1.3.2-0.4_arm64.deb ... 376s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 376s Selecting previously unselected package libtiff6:arm64. 376s Preparing to unpack .../092-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 376s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 376s Selecting previously unselected package libxft2:arm64. 376s Preparing to unpack .../093-libxft2_2.3.6-1_arm64.deb ... 376s Unpacking libxft2:arm64 (2.3.6-1) ... 376s Selecting previously unselected package libxss1:arm64. 376s Preparing to unpack .../094-libxss1_1%3a1.2.3-1build2_arm64.deb ... 376s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 376s Selecting previously unselected package libtk8.6:arm64. 376s Preparing to unpack .../095-libtk8.6_8.6.13-2_arm64.deb ... 376s Unpacking libtk8.6:arm64 (8.6.13-2) ... 376s Selecting previously unselected package libxt6:arm64. 377s Preparing to unpack .../096-libxt6_1%3a1.2.1-1.1_arm64.deb ... 377s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 377s Selecting previously unselected package pkgconf-bin. 377s Preparing to unpack .../097-pkgconf-bin_1.8.1-2_arm64.deb ... 377s Unpacking pkgconf-bin (1.8.1-2) ... 377s Selecting previously unselected package pkgconf:arm64. 377s Preparing to unpack .../098-pkgconf_1.8.1-2_arm64.deb ... 377s Unpacking pkgconf:arm64 (1.8.1-2) ... 377s Selecting previously unselected package pkg-config:arm64. 377s Preparing to unpack .../099-pkg-config_1.8.1-2_arm64.deb ... 377s Unpacking pkg-config:arm64 (1.8.1-2) ... 377s Selecting previously unselected package zip. 378s Preparing to unpack .../100-zip_3.0-13_arm64.deb ... 378s Unpacking zip (3.0-13) ... 378s Selecting previously unselected package unzip. 378s Preparing to unpack .../101-unzip_6.0-28ubuntu3_arm64.deb ... 378s Unpacking unzip (6.0-28ubuntu3) ... 378s Selecting previously unselected package xdg-utils. 378s Preparing to unpack .../102-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 378s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 378s Selecting previously unselected package r-base-core. 378s Preparing to unpack .../103-r-base-core_4.3.2-1build1_arm64.deb ... 378s Unpacking r-base-core (4.3.2-1build1) ... 378s Selecting previously unselected package liblzma-dev:arm64. 378s Preparing to unpack .../104-liblzma-dev_5.4.5-0.3_arm64.deb ... 378s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 378s Selecting previously unselected package r-base-dev. 378s Preparing to unpack .../105-r-base-dev_4.3.2-1build1_all.deb ... 378s Unpacking r-base-dev (4.3.2-1build1) ... 379s Selecting previously unselected package pkg-r-autopkgtest. 379s Preparing to unpack .../106-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 379s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 379s Selecting previously unselected package r-bioc-biocgenerics. 379s Preparing to unpack .../107-r-bioc-biocgenerics_0.48.1-2_all.deb ... 379s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 379s Selecting previously unselected package r-bioc-biobase. 379s Preparing to unpack .../108-r-bioc-biobase_2.62.0-1_arm64.deb ... 379s Unpacking r-bioc-biobase (2.62.0-1) ... 379s Selecting previously unselected package r-bioc-s4vectors. 379s Preparing to unpack .../109-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 379s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 379s Selecting previously unselected package r-bioc-biocio. 379s Preparing to unpack .../110-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 379s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 379s Selecting previously unselected package r-cran-formatr. 379s Preparing to unpack .../111-r-cran-formatr_1.14-1_all.deb ... 379s Unpacking r-cran-formatr (1.14-1) ... 379s Selecting previously unselected package r-cran-lambda.r. 380s Preparing to unpack .../112-r-cran-lambda.r_1.2.4-2build1_all.deb ... 380s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 380s Selecting previously unselected package r-cran-futile.options. 380s Preparing to unpack .../113-r-cran-futile.options_1.0.1-3build1_all.deb ... 380s Unpacking r-cran-futile.options (1.0.1-3build1) ... 380s Selecting previously unselected package r-cran-futile.logger. 380s Preparing to unpack .../114-r-cran-futile.logger_1.4.3-4build1_all.deb ... 380s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 380s Selecting previously unselected package r-cran-snow. 380s Preparing to unpack .../115-r-cran-snow_1%3a0.4.4-2_all.deb ... 380s Unpacking r-cran-snow (1:0.4.4-2) ... 380s Selecting previously unselected package r-cran-codetools. 380s Preparing to unpack .../116-r-cran-codetools_0.2-19-1_all.deb ... 380s Unpacking r-cran-codetools (0.2-19-1) ... 380s Selecting previously unselected package r-cran-bh. 380s Preparing to unpack .../117-r-cran-bh_1.84.0-1_all.deb ... 380s Unpacking r-cran-bh (1.84.0-1) ... 380s Selecting previously unselected package r-cran-cpp11. 380s Preparing to unpack .../118-r-cran-cpp11_0.4.7-1_all.deb ... 380s Unpacking r-cran-cpp11 (0.4.7-1) ... 380s Selecting previously unselected package r-bioc-biocparallel. 380s Preparing to unpack .../119-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 380s Unpacking r-bioc-biocparallel (1.36.0-1) ... 380s Selecting previously unselected package r-bioc-iranges. 380s Preparing to unpack .../120-r-bioc-iranges_2.36.0-1_arm64.deb ... 380s Unpacking r-bioc-iranges (2.36.0-1) ... 380s Selecting previously unselected package r-bioc-zlibbioc. 380s Preparing to unpack .../121-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 380s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 380s Selecting previously unselected package r-bioc-xvector. 380s Preparing to unpack .../122-r-bioc-xvector_0.42.0-1_arm64.deb ... 380s Unpacking r-bioc-xvector (0.42.0-1) ... 380s Selecting previously unselected package r-cran-bitops. 381s Preparing to unpack .../123-r-cran-bitops_1.0-7-1_arm64.deb ... 381s Unpacking r-cran-bitops (1.0-7-1) ... 381s Selecting previously unselected package r-cran-rcurl. 381s Preparing to unpack .../124-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 381s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 381s Selecting previously unselected package r-bioc-genomeinfodbdata. 381s Preparing to unpack .../125-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 381s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 381s Selecting previously unselected package r-bioc-genomeinfodb. 381s Preparing to unpack .../126-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 381s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 381s Selecting previously unselected package r-cran-crayon. 381s Preparing to unpack .../127-r-cran-crayon_1.5.2-1_all.deb ... 381s Unpacking r-cran-crayon (1.5.2-1) ... 381s Selecting previously unselected package r-bioc-biostrings. 381s Preparing to unpack .../128-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 381s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 381s Selecting previously unselected package r-bioc-genomicranges. 381s Preparing to unpack .../129-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 381s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 381s Selecting previously unselected package r-cran-xml. 381s Preparing to unpack .../130-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 381s Unpacking r-cran-xml (3.99-0.16.1-1) ... 381s Selecting previously unselected package r-bioc-rhtslib. 381s Preparing to unpack .../131-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 381s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 382s Selecting previously unselected package r-bioc-rsamtools. 382s Preparing to unpack .../132-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 382s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 382s Selecting previously unselected package r-cran-matrixstats. 382s Preparing to unpack .../133-r-cran-matrixstats_1.2.0-1_arm64.deb ... 382s Unpacking r-cran-matrixstats (1.2.0-1) ... 382s Selecting previously unselected package r-bioc-matrixgenerics. 382s Preparing to unpack .../134-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 382s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 382s Selecting previously unselected package r-cran-lattice. 382s Preparing to unpack .../135-r-cran-lattice_0.22-5-1_arm64.deb ... 382s Unpacking r-cran-lattice (0.22-5-1) ... 382s Selecting previously unselected package r-cran-matrix. 382s Preparing to unpack .../136-r-cran-matrix_1.6-5-1_arm64.deb ... 382s Unpacking r-cran-matrix (1.6-5-1) ... 382s Selecting previously unselected package r-cran-abind. 382s Preparing to unpack .../137-r-cran-abind_1.4-5-2_all.deb ... 382s Unpacking r-cran-abind (1.4-5-2) ... 383s Selecting previously unselected package r-bioc-s4arrays. 383s Preparing to unpack .../138-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 383s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 383s Selecting previously unselected package r-bioc-sparsearray. 383s Preparing to unpack .../139-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 383s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 383s Selecting previously unselected package r-bioc-delayedarray. 383s Preparing to unpack .../140-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 383s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 383s Selecting previously unselected package r-bioc-summarizedexperiment. 384s Preparing to unpack .../141-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 384s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 384s Selecting previously unselected package r-bioc-genomicalignments. 384s Preparing to unpack .../142-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 384s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 384s Selecting previously unselected package r-cran-littler. 384s Preparing to unpack .../143-r-cran-littler_0.3.19-1_arm64.deb ... 384s Unpacking r-cran-littler (0.3.19-1) ... 384s Selecting previously unselected package r-cran-rjson. 384s Preparing to unpack .../144-r-cran-rjson_0.2.21-1_arm64.deb ... 384s Unpacking r-cran-rjson (0.2.21-1) ... 384s Selecting previously unselected package r-cran-yaml. 384s Preparing to unpack .../145-r-cran-yaml_2.3.8-1_arm64.deb ... 384s Unpacking r-cran-yaml (2.3.8-1) ... 384s Selecting previously unselected package r-cran-restfulr. 384s Preparing to unpack .../146-r-cran-restfulr_0.0.15-1_arm64.deb ... 384s Unpacking r-cran-restfulr (0.0.15-1) ... 384s Selecting previously unselected package r-bioc-rtracklayer. 384s Preparing to unpack .../147-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 384s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 384s Selecting previously unselected package r-bioc-bsgenome. 384s Preparing to unpack .../148-r-bioc-bsgenome_1.70.2-1_all.deb ... 384s Unpacking r-bioc-bsgenome (1.70.2-1) ... 384s Selecting previously unselected package r-cran-biocmanager. 385s Preparing to unpack .../149-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 385s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 385s Selecting previously unselected package r-cran-runit. 385s Preparing to unpack .../150-r-cran-runit_0.4.32-3_all.deb ... 385s Unpacking r-cran-runit (0.4.32-3) ... 385s Selecting previously unselected package autopkgtest-satdep. 385s Preparing to unpack .../151-1-autopkgtest-satdep.deb ... 385s Unpacking autopkgtest-satdep (0) ... 385s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 385s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 385s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 385s Setting up libpaper1:arm64 (1.1.29) ... 385s 385s Creating config file /etc/papersize with new version 385s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 385s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 385s Setting up libdatrie1:arm64 (0.2.13-3) ... 385s Setting up libxcb-render0:arm64 (1.15-1) ... 386s Setting up unzip (6.0-28ubuntu3) ... 386s Setting up x11-common (1:7.7+23ubuntu2) ... 386s Setting up libdeflate0:arm64 (1.19-1) ... 386s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 386s Setting up libxcb-shm0:arm64 (1.15-1) ... 386s Setting up libpaper-utils (1.1.29) ... 386s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 386s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 386s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 386s Setting up zip (3.0-13) ... 386s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 386s Setting up libblas3:arm64 (3.12.0-3) ... 386s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 386s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 386s Setting up libpkgconf3:arm64 (1.8.1-2) ... 386s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 386s Setting up fonts-dejavu-mono (2.37-8) ... 386s Setting up libmpc3:arm64 (1.3.1-1) ... 386s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 386s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 386s Setting up icu-devtools (74.2-1ubuntu1) ... 386s Setting up fonts-dejavu-core (2.37-8) ... 386s Setting up pkgconf-bin (1.8.1-2) ... 386s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 386s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 386s Setting up libwebp7:arm64 (1.3.2-0.4) ... 386s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 386s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 386s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 386s Setting up libnsl-dev:arm64 (1.3.0-3) ... 386s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 386s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 386s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 386s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 386s Setting up libthai-data (0.1.29-2) ... 386s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 386s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 386s Setting up libisl23:arm64 (0.26-3) ... 386s Setting up libc-dev-bin (2.39-0ubuntu2) ... 386s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 386s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 386s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 386s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 386s Setting up libblas-dev:arm64 (3.12.0-3) ... 386s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 386s Setting up dctrl-tools (2.24-3build2) ... 386s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 386s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 386s Setting up libice6:arm64 (2:1.0.10-1build2) ... 387s Setting up liblapack3:arm64 (3.12.0-3) ... 387s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 387s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 387s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 388s Setting up pkgconf:arm64 (1.8.1-2) ... 388s Setting up libthai0:arm64 (0.1.29-2) ... 388s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 388s Setting up liblapack-dev:arm64 (3.12.0-3) ... 388s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 388s Setting up pkg-config:arm64 (1.8.1-2) ... 388s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 388s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 388s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 388s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 388s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 388s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 388s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 388s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 388s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 388s Setting up fontconfig (2.15.0-1ubuntu1) ... 390s Regenerating fonts cache... done. 390s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 390s Setting up libxft2:arm64 (2.3.6-1) ... 390s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 390s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 390s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 390s Setting up cpp-13 (13.2.0-17ubuntu2) ... 390s Setting up libtk8.6:arm64 (8.6.13-2) ... 390s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 390s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 390s Setting up libreadline-dev:arm64 (8.2-3) ... 390s Setting up libcairo2:arm64 (1.18.0-1) ... 390s Setting up gcc-13 (13.2.0-17ubuntu2) ... 390s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 390s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 390s Setting up cpp (4:13.2.0-7ubuntu1) ... 390s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 390s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 390s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 390s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 390s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 390s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 390s Setting up g++-13 (13.2.0-17ubuntu2) ... 390s Setting up libpng-dev:arm64 (1.6.43-1) ... 390s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 390s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 390s Setting up gcc (4:13.2.0-7ubuntu1) ... 390s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 390s Setting up r-base-core (4.3.2-1build1) ... 391s 391s Creating config file /etc/R/Renviron with new version 391s Setting up r-cran-crayon (1.5.2-1) ... 391s Setting up r-cran-futile.options (1.0.1-3build1) ... 391s Setting up r-cran-lattice (0.22-5-1) ... 391s Setting up r-cran-formatr (1.14-1) ... 391s Setting up r-cran-xml (3.99-0.16.1-1) ... 391s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 391s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 391s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 391s Setting up r-cran-littler (0.3.19-1) ... 391s Setting up r-cran-bh (1.84.0-1) ... 391s Setting up r-cran-codetools (0.2-19-1) ... 391s Setting up r-bioc-biocgenerics (0.48.1-2) ... 391s Setting up r-cran-matrixstats (1.2.0-1) ... 391s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 391s Setting up r-cran-abind (1.4-5-2) ... 391s Setting up r-cran-yaml (2.3.8-1) ... 391s Setting up r-cran-lambda.r (1.2.4-2build1) ... 391s Setting up r-cran-snow (1:0.4.4-2) ... 391s Setting up gfortran (4:13.2.0-7ubuntu1) ... 391s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 391s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 391s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 391s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 391s Setting up r-cran-bitops (1.0-7-1) ... 391s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 391s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 391s Setting up r-bioc-biobase (2.62.0-1) ... 391s Setting up r-cran-cpp11 (0.4.7-1) ... 391s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 391s Setting up r-cran-runit (0.4.32-3) ... 391s Setting up r-cran-futile.logger (1.4.3-4build1) ... 391s Setting up r-cran-matrix (1.6-5-1) ... 391s Setting up g++ (4:13.2.0-7ubuntu1) ... 391s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 391s Setting up build-essential (12.10ubuntu1) ... 391s Setting up r-bioc-iranges (2.36.0-1) ... 391s Setting up r-cran-rjson (0.2.21-1) ... 391s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 391s Setting up r-cran-restfulr (0.0.15-1) ... 391s Setting up r-base-dev (4.3.2-1build1) ... 391s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 391s Setting up r-bioc-biocparallel (1.36.0-1) ... 391s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 391s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 391s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 391s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 391s Setting up r-bioc-xvector (0.42.0-1) ... 391s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 391s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 391s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 391s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 391s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 391s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 391s Setting up r-bioc-genomicalignments (1.38.2-1) ... 391s Setting up r-bioc-rtracklayer (1.62.0-1) ... 391s Setting up r-bioc-bsgenome (1.70.2-1) ... 391s Setting up autopkgtest-satdep (0) ... 391s Processing triggers for man-db (2.12.0-3) ... 392s Processing triggers for install-info (7.1-3) ... 392s Processing triggers for libc-bin (2.39-0ubuntu2) ... 408s (Reading database ... 100234 files and directories currently installed.) 408s Removing autopkgtest-satdep (0) ... 410s autopkgtest [17:31:11]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 410s autopkgtest [17:31:11]: test pkg-r-autopkgtest: [----------------------- 411s Test: Try to load the R library BSgenome 411s 411s R version 4.3.2 (2023-10-31) -- "Eye Holes" 411s Copyright (C) 2023 The R Foundation for Statistical Computing 411s Platform: aarch64-unknown-linux-gnu (64-bit) 411s 411s R is free software and comes with ABSOLUTELY NO WARRANTY. 411s You are welcome to redistribute it under certain conditions. 411s Type 'license()' or 'licence()' for distribution details. 411s 411s R is a collaborative project with many contributors. 411s Type 'contributors()' for more information and 411s 'citation()' on how to cite R or R packages in publications. 411s 411s Type 'demo()' for some demos, 'help()' for on-line help, or 411s 'help.start()' for an HTML browser interface to help. 411s Type 'q()' to quit R. 411s 411s > library('BSgenome') 411s Loading required package: BiocGenerics 411s 411s Attaching package: ‘BiocGenerics’ 411s 411s The following objects are masked from ‘package:stats’: 411s 411s IQR, mad, sd, var, xtabs 411s 411s The following objects are masked from ‘package:base’: 411s 411s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 411s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 411s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 411s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 411s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 411s table, tapply, union, unique, unsplit, which.max, which.min 411s 411s Loading required package: S4Vectors 411s Loading required package: stats4 412s 412s Attaching package: ‘S4Vectors’ 412s 412s The following object is masked from ‘package:utils’: 412s 412s findMatches 412s 412s The following objects are masked from ‘package:base’: 412s 412s expand.grid, I, unname 412s 412s Loading required package: IRanges 413s Loading required package: GenomeInfoDb 413s Loading required package: GenomicRanges 414s Loading required package: Biostrings 414s Loading required package: XVector 414s 414s Attaching package: ‘Biostrings’ 414s 414s The following object is masked from ‘package:base’: 414s 414s strsplit 414s 414s Loading required package: BiocIO 414s Loading required package: rtracklayer 419s 419s Attaching package: ‘rtracklayer’ 419s 419s The following object is masked from ‘package:BiocIO’: 419s 419s FileForFormat 419s 420s > 420s > 420s Other tests are currently unsupported! 420s They will be progressively added. 421s autopkgtest [17:31:22]: test pkg-r-autopkgtest: -----------------------] 422s autopkgtest [17:31:23]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 422s pkg-r-autopkgtest PASS 422s autopkgtest [17:31:23]: @@@@@@@@@@@@@@@@@@@@ summary 422s pkg-r-autopkgtest PASS 440s Creating nova instance adt-noble-arm64-r-bioc-bsgenome-20240316-172421-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...