0s autopkgtest [13:38:36]: starting date and time: 2024-03-16 13:38:36+0000 0s autopkgtest [13:38:36]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:38:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.t_257uad/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-bsgenome --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-13.secgroup --name adt-noble-arm64-r-bioc-bsgenome-20240316-133835-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 74s autopkgtest [13:39:50]: testbed dpkg architecture: arm64 74s autopkgtest [13:39:50]: testbed apt version: 2.7.12 74s autopkgtest [13:39:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 74s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 75s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 75s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 75s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 75s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 75s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 75s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 75s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 75s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 75s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 75s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 75s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 75s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 77s Fetched 9092 kB in 2s (5099 kB/s) 77s Reading package lists... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 81s Calculating upgrade... 81s The following packages will be REMOVED: 81s libssl3 81s The following NEW packages will be installed: 81s libssl3t64 81s The following packages have been kept back: 81s curl 81s The following packages will be upgraded: 81s openssl ubuntu-minimal ubuntu-standard 81s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 81s Need to get 2775 kB of archives. 81s After this operation, 72.7 kB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 82s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 82s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 82s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 83s Fetched 2775 kB in 1s (3992 kB/s) 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 83s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 83s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 83s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 83s wget depends on libssl3 (>= 3.0.0). 83s u-boot-tools depends on libssl3 (>= 3.0.0). 83s tnftp depends on libssl3 (>= 3.0.0). 83s tcpdump depends on libssl3 (>= 3.0.0). 83s systemd-resolved depends on libssl3 (>= 3.0.0). 83s systemd depends on libssl3 (>= 3.0.0). 83s sudo depends on libssl3 (>= 3.0.0). 83s sbsigntool depends on libssl3 (>= 3.0.0). 83s rsync depends on libssl3 (>= 3.0.0). 83s python3-cryptography depends on libssl3 (>= 3.0.0). 83s openssh-server depends on libssl3 (>= 3.0.10). 83s openssh-client depends on libssl3 (>= 3.0.10). 83s mtd-utils depends on libssl3 (>= 3.0.0). 83s mokutil depends on libssl3 (>= 3.0.0). 83s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 83s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 83s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 83s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 83s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 83s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 83s libnvme1 depends on libssl3 (>= 3.0.0). 83s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 83s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 83s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 83s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 83s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 83s kmod depends on libssl3 (>= 3.0.0). 83s dhcpcd-base depends on libssl3 (>= 3.0.0). 83s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 83s 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 83s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 83s Selecting previously unselected package libssl3t64:arm64. 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 83s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 83s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 83s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 83s Unpacking ubuntu-minimal (1.536) over (1.535) ... 83s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 83s Unpacking ubuntu-standard (1.536) over (1.535) ... 83s Setting up ubuntu-minimal (1.536) ... 83s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 83s Setting up ubuntu-standard (1.536) ... 83s Setting up openssl (3.0.13-0ubuntu1) ... 83s Processing triggers for man-db (2.12.0-3) ... 84s Processing triggers for libc-bin (2.39-0ubuntu2) ... 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 86s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 86s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 86s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 86s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 87s Reading package lists... 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 88s Calculating upgrade... 88s The following packages have been kept back: 88s curl 88s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 88s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 93s autopkgtest [13:40:09]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 93s autopkgtest [13:40:09]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-bsgenome 96s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-bsgenome 1.70.2-1 (dsc) [2284 B] 96s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-bsgenome 1.70.2-1 (tar) [5909 kB] 96s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-bsgenome 1.70.2-1 (diff) [10.1 kB] 96s gpgv: Signature made Tue Feb 13 12:40:36 2024 UTC 96s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 96s gpgv: issuer "tille@debian.org" 96s gpgv: Can't check signature: No public key 96s dpkg-source: warning: cannot verify inline signature for ./r-bioc-bsgenome_1.70.2-1.dsc: no acceptable signature found 97s autopkgtest [13:40:13]: testing package r-bioc-bsgenome version 1.70.2-1 97s autopkgtest [13:40:13]: build not needed 98s autopkgtest [13:40:14]: test pkg-r-autopkgtest: preparing testbed 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s Starting pkgProblemResolver with broken count: 0 100s Starting 2 pkgProblemResolver with broken count: 0 100s Done 101s The following additional packages will be installed: 101s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 101s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 101s fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu 101s gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran 101s gfortran-13 gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu 101s icu-devtools libasan8 libatomic1 libblas-dev libblas3 libboost-dev 101s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 101s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 101s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 101s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 101s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev 101s liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 101s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 101s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 101s libpixman-1-0 libpkgconf3 libpng-dev libpsl5t64 libreadline-dev libsharpyuv0 101s libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 101s libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 101s libxft2 libxrender1 libxss1 libxt6 linux-libc-dev pkg-config 101s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biobase 101s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings 101s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 101s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 101s r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 101s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 101s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 101s r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-codetools r-cran-cpp11 101s r-cran-crayon r-cran-formatr r-cran-futile.logger r-cran-futile.options 101s r-cran-lambda.r r-cran-lattice r-cran-littler r-cran-matrix 101s r-cran-matrixstats r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-runit 101s r-cran-snow r-cran-xml r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils 101s zip zlib1g-dev 101s Suggested packages: 101s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 101s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 101s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 101s liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev 101s libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev 101s libboost-contract1.83-dev libboost-coroutine1.83-dev 101s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 101s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 101s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 101s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 101s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 101s libboost-numpy1.83-dev libboost-program-options1.83-dev 101s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 101s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 101s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 101s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 101s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 101s glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 101s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 101s texlive-base texlive-latex-base texlive-plain-generic 101s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 101s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all 101s r-bioc-biocstyle r-cran-knitr r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 101s r-bioc-annotate r-cran-testthat r-cran-rmarkdown r-cran-foreach 101s r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation r-bioc-shortread 101s r-cran-batchtools r-cran-data.table r-bioc-genomicfeatures r-bioc-hdf5array 101s r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-cran-r.utils 101s r-bioc-edger r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-keggrest 101s r-cran-digest r-bioc-sparsematrixstats r-bioc-limma r-bioc-org.hs.eg.db 101s r-bioc-graph r-cran-jsonlite r-bioc-rhdf5 r-cran-rstudioapi r-cran-shiny 101s r-cran-getopt r-cran-rmpi r-cran-rlecuyer 101s Recommended packages: 101s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended 101s r-doc-html r-bioc-biocversion r-cran-remotes r-cran-rmarkdown 101s r-cran-testthat r-cran-withr r-cran-curl r-cran-knitr r-cran-bench 101s r-cran-brio r-cran-callr r-cran-cli r-cran-covr r-cran-decor r-cran-desc 101s r-cran-ggplot2 r-cran-glue r-cran-lobstr r-cran-mockery r-cran-progress 101s r-cran-scales r-cran-rcpp r-cran-tibble r-cran-vctrs r-cran-testit 101s r-cran-survival r-cran-base64enc r-cran-markdown r-cran-r.devices 101s r-cran-r.rsp libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 101s x11-utils x11-xserver-utils 101s The following packages will be REMOVED: 101s libcurl4 libpsl5 101s The following NEW packages will be installed: 101s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 101s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 101s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 101s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 101s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 101s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 101s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 101s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 101s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 101s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 101s libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 101s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 101s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 101s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 101s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpsl5t64 101s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data 101s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 101s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 101s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 101s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 101s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 101s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 101s r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 101s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 101s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 101s r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-codetools r-cran-cpp11 101s r-cran-crayon r-cran-formatr r-cran-futile.logger r-cran-futile.options 101s r-cran-lambda.r r-cran-lattice r-cran-littler r-cran-matrix 101s r-cran-matrixstats r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-runit 101s r-cran-snow r-cran-xml r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils 101s zip zlib1g-dev 101s The following packages will be upgraded: 101s curl 101s 1 upgraded, 154 newly installed, 2 to remove and 0 not upgraded. 101s Need to get 221 MB/221 MB of archives. 101s After this operation, 692 MB of additional disk space will be used. 101s Get:1 /tmp/autopkgtest.m9jhRJ/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [752 B] 101s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 102s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 102s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 102s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 102s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 102s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 102s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 102s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 102s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 102s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 102s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 102s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 102s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 102s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 102s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 102s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 102s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 102s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 102s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 102s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 102s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 102s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 102s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 102s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 102s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 102s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 102s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 103s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 103s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 103s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 103s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 103s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 103s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 103s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 103s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 103s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 103s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 103s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 103s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 103s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 103s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 103s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 103s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 103s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 103s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 104s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 104s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 104s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 104s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 104s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 104s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 104s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 104s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 104s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 104s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 104s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 104s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 104s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 104s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 104s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 104s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 104s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 104s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 104s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 104s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 104s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 104s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 104s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 104s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 104s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 104s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 104s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 104s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 105s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 105s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 105s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 105s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 105s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 105s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 105s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 105s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 105s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 105s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 105s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 105s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 105s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 105s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 105s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 105s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 105s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 105s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 105s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 105s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 105s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 105s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 105s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 105s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 105s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 105s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 105s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 105s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 105s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 105s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 105s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 105s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 105s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 105s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 106s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 106s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 106s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 106s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 106s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 106s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 106s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 106s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 106s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 106s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 106s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 106s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 106s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 106s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 106s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 107s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 107s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 107s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 107s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 107s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 107s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 107s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 107s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 107s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 107s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 108s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 108s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 108s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 108s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1build1 [3636 kB] 108s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 108s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 108s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 108s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 108s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 108s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 108s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 108s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 108s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 109s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 109s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 109s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 109s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 109s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 109s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 109s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 109s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 109s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 110s Preconfiguring packages ... 110s Fetched 221 MB in 8s (27.7 MB/s) 110s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 110s wget depends on libpsl5 (>= 0.16.0). 110s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 110s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 110s 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 110s Removing libpsl5:arm64 (0.21.2-1build1) ... 110s Selecting previously unselected package libpsl5t64:arm64. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 110s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 110s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 110s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 110s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 110s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 110s Selecting previously unselected package libcurl4t64:arm64. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 110s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 110s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 111s Selecting previously unselected package libc-dev-bin. 111s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 111s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 111s Selecting previously unselected package linux-libc-dev:arm64. 111s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 111s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 111s Selecting previously unselected package libcrypt-dev:arm64. 111s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 111s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 111s Selecting previously unselected package libtirpc-dev:arm64. 111s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 111s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 111s Selecting previously unselected package libnsl-dev:arm64. 111s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 111s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 111s Selecting previously unselected package rpcsvc-proto. 111s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 111s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 111s Selecting previously unselected package libc6-dev:arm64. 111s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 111s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 111s Selecting previously unselected package libisl23:arm64. 111s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 111s Unpacking libisl23:arm64 (0.26-3) ... 111s Selecting previously unselected package libmpc3:arm64. 111s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 111s Unpacking libmpc3:arm64 (1.3.1-1) ... 111s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 111s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 111s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 111s Selecting previously unselected package cpp-13. 111s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 111s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 111s Selecting previously unselected package cpp-aarch64-linux-gnu. 111s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 111s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 111s Selecting previously unselected package cpp. 111s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 111s Unpacking cpp (4:13.2.0-7ubuntu1) ... 111s Selecting previously unselected package libcc1-0:arm64. 111s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libgomp1:arm64. 111s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libitm1:arm64. 111s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libatomic1:arm64. 111s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libasan8:arm64. 112s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package liblsan0:arm64. 112s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libtsan2:arm64. 112s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libubsan1:arm64. 112s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libhwasan0:arm64. 112s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libgcc-13-dev:arm64. 112s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 112s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 112s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 112s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 112s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 112s Selecting previously unselected package gcc-13. 112s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 112s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 112s Selecting previously unselected package gcc-aarch64-linux-gnu. 112s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 112s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 112s Selecting previously unselected package gcc. 112s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 112s Unpacking gcc (4:13.2.0-7ubuntu1) ... 112s Selecting previously unselected package libstdc++-13-dev:arm64. 112s Preparing to unpack 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.../033-build-essential_12.10ubuntu1_arm64.deb ... 113s Unpacking build-essential (12.10ubuntu1) ... 113s Selecting previously unselected package dctrl-tools. 113s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 113s Unpacking dctrl-tools (2.24-3build2) ... 113s Selecting previously unselected package fonts-dejavu-mono. 113s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 113s Unpacking fonts-dejavu-mono (2.37-8) ... 113s Selecting previously unselected package fonts-dejavu-core. 113s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 113s Unpacking fonts-dejavu-core (2.37-8) ... 113s Selecting previously unselected package fontconfig-config. 113s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 113s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 113s Selecting previously unselected package libfontconfig1:arm64. 113s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 113s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 113s Selecting previously unselected package fontconfig. 113s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 113s Unpacking fontconfig (2.15.0-1ubuntu1) ... 113s Selecting previously unselected package libgfortran5:arm64. 113s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 113s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 113s Selecting previously unselected package libgfortran-13-dev:arm64. 113s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 113s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 113s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 113s Preparing to unpack .../042-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 113s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 114s Selecting previously unselected package gfortran-13. 114s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 114s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 114s Selecting previously unselected package gfortran-aarch64-linux-gnu. 114s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 114s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 114s Selecting previously unselected package gfortran. 114s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 114s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 114s Selecting previously unselected package icu-devtools. 114s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_arm64.deb ... 114s Unpacking icu-devtools (74.2-1ubuntu1) ... 114s Selecting previously unselected package libblas3:arm64. 114s Preparing to unpack .../047-libblas3_3.12.0-3_arm64.deb ... 114s Unpacking libblas3:arm64 (3.12.0-3) ... 114s Selecting previously unselected package libblas-dev:arm64. 114s Preparing to unpack .../048-libblas-dev_3.12.0-3_arm64.deb ... 114s Unpacking libblas-dev:arm64 (3.12.0-3) ... 114s Selecting previously unselected package libboost1.83-dev:arm64. 114s Preparing to unpack .../049-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 114s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 116s Selecting previously unselected package libboost-dev:arm64. 116s Preparing to unpack .../050-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 116s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 116s Selecting previously unselected package libbz2-dev:arm64. 116s Preparing to unpack .../051-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 116s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 116s Selecting previously unselected package libpixman-1-0:arm64. 116s Preparing to unpack .../052-libpixman-1-0_0.42.2-1_arm64.deb ... 116s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 116s Selecting previously unselected package libxcb-render0:arm64. 116s Preparing to unpack .../053-libxcb-render0_1.15-1_arm64.deb ... 116s Unpacking libxcb-render0:arm64 (1.15-1) ... 116s Selecting previously unselected package libxcb-shm0:arm64. 116s Preparing to unpack .../054-libxcb-shm0_1.15-1_arm64.deb ... 116s Unpacking libxcb-shm0:arm64 (1.15-1) ... 116s Selecting previously unselected package libxrender1:arm64. 116s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 116s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 116s Selecting previously unselected package libcairo2:arm64. 116s Preparing to unpack .../056-libcairo2_1.18.0-1_arm64.deb ... 116s Unpacking libcairo2:arm64 (1.18.0-1) ... 116s Selecting previously unselected package libdatrie1:arm64. 116s Preparing to unpack .../057-libdatrie1_0.2.13-3_arm64.deb ... 116s Unpacking libdatrie1:arm64 (0.2.13-3) ... 116s Selecting previously unselected package libdeflate0:arm64. 116s Preparing to unpack .../058-libdeflate0_1.19-1_arm64.deb ... 116s Unpacking libdeflate0:arm64 (1.19-1) ... 116s Selecting previously unselected package libgraphite2-3:arm64. 116s Preparing to unpack .../059-libgraphite2-3_1.3.14-2_arm64.deb ... 116s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 116s Selecting previously unselected package libharfbuzz0b:arm64. 116s Preparing to unpack .../060-libharfbuzz0b_8.3.0-2_arm64.deb ... 116s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 116s Selecting previously unselected package x11-common. 116s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu2_all.deb ... 116s Unpacking x11-common (1:7.7+23ubuntu2) ... 116s Selecting previously unselected package libice6:arm64. 116s Preparing to unpack .../062-libice6_2%3a1.0.10-1build2_arm64.deb ... 116s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 116s Selecting previously unselected package libicu-dev:arm64. 116s Preparing to unpack .../063-libicu-dev_74.2-1ubuntu1_arm64.deb ... 116s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 116s Selecting previously unselected package libjpeg-turbo8:arm64. 116s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 116s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 116s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 117s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 117s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 117s Selecting previously unselected package libjpeg8:arm64. 117s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ... 117s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 117s Selecting previously unselected package libjpeg8-dev:arm64. 117s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 117s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 117s Selecting previously unselected package libjpeg-dev:arm64. 117s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 117s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 117s Selecting previously unselected package liblapack3:arm64. 117s Preparing to unpack .../069-liblapack3_3.12.0-3_arm64.deb ... 117s Unpacking liblapack3:arm64 (3.12.0-3) ... 117s Selecting previously unselected package liblapack-dev:arm64. 117s Preparing to unpack .../070-liblapack-dev_3.12.0-3_arm64.deb ... 117s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 117s Selecting previously unselected package liblerc4:arm64. 117s Preparing to unpack .../071-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 117s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 117s Selecting previously unselected package libncurses-dev:arm64. 117s Preparing to unpack .../072-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 117s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 117s Selecting previously unselected package libthai-data. 117s Preparing to unpack .../073-libthai-data_0.1.29-2_all.deb ... 117s Unpacking libthai-data (0.1.29-2) ... 117s Selecting previously unselected package libthai0:arm64. 117s Preparing to unpack .../074-libthai0_0.1.29-2_arm64.deb ... 117s Unpacking libthai0:arm64 (0.1.29-2) ... 117s Selecting previously unselected package libpango-1.0-0:arm64. 117s Preparing to unpack .../075-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 117s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 117s Selecting previously unselected package libpangoft2-1.0-0:arm64. 117s Preparing to unpack .../076-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 117s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 117s Selecting previously unselected package libpangocairo-1.0-0:arm64. 117s Preparing to unpack .../077-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 117s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 117s Selecting previously unselected package libpaper1:arm64. 117s Preparing to unpack .../078-libpaper1_1.1.29_arm64.deb ... 117s Unpacking libpaper1:arm64 (1.1.29) ... 117s Selecting previously unselected package libpaper-utils. 117s Preparing to unpack .../079-libpaper-utils_1.1.29_arm64.deb ... 117s Unpacking libpaper-utils (1.1.29) ... 117s Selecting previously unselected package libpcre2-16-0:arm64. 117s Preparing to unpack .../080-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 117s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 117s Selecting previously unselected package libpcre2-32-0:arm64. 117s Preparing to unpack .../081-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 117s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 117s Selecting previously unselected package libpcre2-posix3:arm64. 117s Preparing to unpack .../082-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 117s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 117s Selecting previously unselected package libpcre2-dev:arm64. 117s Preparing to unpack .../083-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 117s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 117s Selecting previously unselected package libpkgconf3:arm64. 117s Preparing to unpack .../084-libpkgconf3_1.8.1-2_arm64.deb ... 117s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 117s Selecting previously unselected package zlib1g-dev:arm64. 117s Preparing to unpack .../085-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 117s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 117s Selecting previously unselected package libpng-dev:arm64. 117s Preparing to unpack .../086-libpng-dev_1.6.43-1_arm64.deb ... 117s Unpacking libpng-dev:arm64 (1.6.43-1) ... 118s Selecting previously unselected package libreadline-dev:arm64. 118s Preparing to unpack .../087-libreadline-dev_8.2-3_arm64.deb ... 118s Unpacking libreadline-dev:arm64 (8.2-3) ... 118s Selecting previously unselected package libsharpyuv0:arm64. 118s Preparing to unpack .../088-libsharpyuv0_1.3.2-0.4_arm64.deb ... 118s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 118s Selecting previously unselected package libsm6:arm64. 118s Preparing to unpack .../089-libsm6_2%3a1.2.3-1build2_arm64.deb ... 118s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 118s Selecting previously unselected package libtcl8.6:arm64. 118s Preparing to unpack .../090-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 118s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 118s Selecting previously unselected package libjbig0:arm64. 118s Preparing to unpack .../091-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 118s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 118s Selecting previously unselected package libwebp7:arm64. 118s Preparing to unpack .../092-libwebp7_1.3.2-0.4_arm64.deb ... 118s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 118s Selecting previously unselected package libtiff6:arm64. 118s Preparing to unpack .../093-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 118s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 118s Selecting previously unselected package libxft2:arm64. 118s Preparing to unpack .../094-libxft2_2.3.6-1_arm64.deb ... 118s Unpacking libxft2:arm64 (2.3.6-1) ... 118s Selecting previously unselected package libxss1:arm64. 118s Preparing to unpack .../095-libxss1_1%3a1.2.3-1build2_arm64.deb ... 118s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 118s Selecting previously unselected package libtk8.6:arm64. 118s Preparing to unpack .../096-libtk8.6_8.6.13-2_arm64.deb ... 118s Unpacking libtk8.6:arm64 (8.6.13-2) ... 118s Selecting previously unselected package libxt6:arm64. 118s Preparing to unpack .../097-libxt6_1%3a1.2.1-1.1_arm64.deb ... 118s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 118s Selecting previously unselected package pkgconf-bin. 118s Preparing to unpack .../098-pkgconf-bin_1.8.1-2_arm64.deb ... 118s Unpacking pkgconf-bin (1.8.1-2) ... 118s Selecting previously unselected package pkgconf:arm64. 118s Preparing to unpack .../099-pkgconf_1.8.1-2_arm64.deb ... 118s Unpacking pkgconf:arm64 (1.8.1-2) ... 118s Selecting previously unselected package pkg-config:arm64. 118s Preparing to unpack .../100-pkg-config_1.8.1-2_arm64.deb ... 118s Unpacking pkg-config:arm64 (1.8.1-2) ... 118s Selecting previously unselected package zip. 118s Preparing to unpack .../101-zip_3.0-13_arm64.deb ... 118s Unpacking zip (3.0-13) ... 118s Selecting previously unselected package unzip. 118s Preparing to unpack .../102-unzip_6.0-28ubuntu3_arm64.deb ... 118s Unpacking unzip (6.0-28ubuntu3) ... 118s Selecting previously unselected package xdg-utils. 118s Preparing to unpack .../103-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 118s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 118s Selecting previously unselected package r-base-core. 118s Preparing to unpack .../104-r-base-core_4.3.2-1build1_arm64.deb ... 118s Unpacking r-base-core (4.3.2-1build1) ... 119s Selecting previously unselected package liblzma-dev:arm64. 119s Preparing to unpack .../105-liblzma-dev_5.4.5-0.3_arm64.deb ... 119s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 119s Selecting previously unselected package r-base-dev. 119s Preparing to unpack .../106-r-base-dev_4.3.2-1build1_all.deb ... 119s Unpacking r-base-dev (4.3.2-1build1) ... 119s Selecting previously unselected package pkg-r-autopkgtest. 119s Preparing to unpack .../107-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 119s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 119s Selecting previously unselected package r-bioc-biocgenerics. 119s Preparing to unpack .../108-r-bioc-biocgenerics_0.48.1-2_all.deb ... 119s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 119s Selecting previously unselected package r-bioc-biobase. 119s Preparing to unpack .../109-r-bioc-biobase_2.62.0-1_arm64.deb ... 119s Unpacking r-bioc-biobase (2.62.0-1) ... 119s Selecting previously unselected package r-bioc-s4vectors. 119s Preparing to unpack .../110-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 119s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 119s Selecting previously unselected package r-bioc-biocio. 119s Preparing to unpack .../111-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 119s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 119s Selecting previously unselected package r-cran-formatr. 119s Preparing to unpack .../112-r-cran-formatr_1.14-1_all.deb ... 119s Unpacking r-cran-formatr (1.14-1) ... 119s Selecting previously unselected package r-cran-lambda.r. 119s Preparing to unpack .../113-r-cran-lambda.r_1.2.4-2build1_all.deb ... 119s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 119s Selecting previously unselected package r-cran-futile.options. 119s Preparing to unpack .../114-r-cran-futile.options_1.0.1-3build1_all.deb ... 119s Unpacking r-cran-futile.options (1.0.1-3build1) ... 119s Selecting previously unselected package r-cran-futile.logger. 119s Preparing to unpack .../115-r-cran-futile.logger_1.4.3-4build1_all.deb ... 119s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 119s Selecting previously unselected package r-cran-snow. 119s Preparing to unpack .../116-r-cran-snow_1%3a0.4.4-2_all.deb ... 119s Unpacking r-cran-snow (1:0.4.4-2) ... 119s Selecting previously unselected package r-cran-codetools. 119s Preparing to unpack .../117-r-cran-codetools_0.2-19-1_all.deb ... 119s Unpacking r-cran-codetools (0.2-19-1) ... 119s Selecting previously unselected package r-cran-bh. 119s Preparing to unpack .../118-r-cran-bh_1.84.0-1_all.deb ... 119s Unpacking r-cran-bh (1.84.0-1) ... 119s Selecting previously unselected package r-cran-cpp11. 119s Preparing to unpack .../119-r-cran-cpp11_0.4.7-1_all.deb ... 119s Unpacking r-cran-cpp11 (0.4.7-1) ... 119s Selecting previously unselected package r-bioc-biocparallel. 119s Preparing to unpack .../120-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 119s Unpacking r-bioc-biocparallel (1.36.0-1) ... 119s Selecting previously unselected package r-bioc-iranges. 119s Preparing to unpack .../121-r-bioc-iranges_2.36.0-1_arm64.deb ... 119s Unpacking r-bioc-iranges (2.36.0-1) ... 119s Selecting previously unselected package r-bioc-zlibbioc. 119s Preparing to unpack .../122-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 119s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 119s Selecting previously unselected package r-bioc-xvector. 119s Preparing to unpack .../123-r-bioc-xvector_0.42.0-1_arm64.deb ... 119s Unpacking r-bioc-xvector (0.42.0-1) ... 119s Selecting previously unselected package r-cran-bitops. 119s Preparing to unpack .../124-r-cran-bitops_1.0-7-1_arm64.deb ... 119s Unpacking r-cran-bitops (1.0-7-1) ... 119s Selecting previously unselected package r-cran-rcurl. 119s Preparing to unpack .../125-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 119s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 119s Selecting previously unselected package r-bioc-genomeinfodbdata. 119s Preparing to unpack .../126-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 119s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 119s Selecting previously unselected package r-bioc-genomeinfodb. 119s Preparing to unpack .../127-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 119s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 120s Selecting previously unselected package r-cran-crayon. 120s Preparing to unpack .../128-r-cran-crayon_1.5.2-1_all.deb ... 120s Unpacking r-cran-crayon (1.5.2-1) ... 120s Selecting previously unselected package r-bioc-biostrings. 120s Preparing to unpack .../129-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 120s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 120s Selecting previously unselected package r-bioc-genomicranges. 120s Preparing to unpack .../130-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 120s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 120s Selecting previously unselected package r-cran-xml. 120s Preparing to unpack .../131-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 120s Unpacking r-cran-xml (3.99-0.16.1-1) ... 120s Selecting previously unselected package r-bioc-rhtslib. 120s Preparing to unpack .../132-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 120s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 120s Selecting previously unselected package r-bioc-rsamtools. 120s Preparing to unpack .../133-r-bioc-rsamtools_2.18.0+dfsg-1build1_arm64.deb ... 120s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 120s Selecting previously unselected package r-cran-matrixstats. 120s Preparing to unpack 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120s Selecting previously unselected package r-bioc-sparsearray. 120s Preparing to unpack .../140-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 120s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 120s Selecting previously unselected package r-bioc-delayedarray. 120s Preparing to unpack .../141-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 120s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 120s Selecting previously unselected package r-bioc-summarizedexperiment. 120s Preparing to unpack .../142-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 120s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 120s Selecting previously unselected package r-bioc-genomicalignments. 120s Preparing to unpack .../143-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 120s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 121s Selecting previously unselected package r-cran-littler. 121s Preparing to unpack .../144-r-cran-littler_0.3.19-1_arm64.deb ... 121s Unpacking r-cran-littler 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auto mode 122s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 122s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 122s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 122s Setting up pkgconf:arm64 (1.8.1-2) ... 122s Setting up libthai0:arm64 (0.1.29-2) ... 122s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 122s Setting up liblapack-dev:arm64 (3.12.0-3) ... 122s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 122s Setting up pkg-config:arm64 (1.8.1-2) ... 122s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 122s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 122s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 122s Setting up curl (8.5.0-2ubuntu7) ... 122s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 122s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 122s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 122s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 122s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 122s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 122s Setting up fontconfig (2.15.0-1ubuntu1) ... 124s Regenerating fonts cache... done. 124s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 124s Setting up libxft2:arm64 (2.3.6-1) ... 124s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 124s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 124s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 124s Setting up cpp-13 (13.2.0-17ubuntu2) ... 124s Setting up libtk8.6:arm64 (8.6.13-2) ... 124s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 124s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 124s Setting up libreadline-dev:arm64 (8.2-3) ... 124s Setting up libcairo2:arm64 (1.18.0-1) ... 124s Setting up gcc-13 (13.2.0-17ubuntu2) ... 124s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 124s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) 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/usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 124s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 124s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 124s Setting up r-cran-bitops (1.0-7-1) ... 124s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 124s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 124s Setting up r-bioc-biobase (2.62.0-1) ... 124s Setting up r-cran-cpp11 (0.4.7-1) ... 124s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 124s Setting up r-cran-runit (0.4.32-3) ... 124s Setting up r-cran-futile.logger (1.4.3-4build1) ... 124s Setting up r-cran-matrix (1.6-5-1) ... 124s Setting up g++ (4:13.2.0-7ubuntu1) ... 124s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 124s Setting up build-essential (12.10ubuntu1) ... 124s Setting up r-bioc-iranges (2.36.0-1) ... 124s Setting up r-cran-rjson (0.2.21-1) ... 124s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 124s Setting up r-cran-restfulr (0.0.15-1) ... 124s Setting up r-base-dev (4.3.2-1build1) ... 124s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 124s Setting up r-bioc-biocparallel (1.36.0-1) ... 124s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 124s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 124s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 124s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 124s Setting up r-bioc-xvector (0.42.0-1) ... 124s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 124s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 124s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 124s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 124s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 124s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 124s Setting up r-bioc-genomicalignments (1.38.2-1) ... 124s Setting up r-bioc-rtracklayer (1.62.0-1) ... 124s Setting up r-bioc-bsgenome (1.70.2-1) ... 124s Setting up autopkgtest-satdep (0) ... 124s Processing triggers for man-db (2.12.0-3) ... 125s Processing triggers for install-info (7.1-3) ... 125s Processing triggers for libc-bin (2.39-0ubuntu2) ... 132s (Reading database ... 100666 files and directories currently installed.) 132s Removing autopkgtest-satdep (0) ... 133s autopkgtest [13:40:49]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 133s autopkgtest [13:40:49]: test pkg-r-autopkgtest: [----------------------- 133s Test: Try to load the R library BSgenome 133s 133s R version 4.3.2 (2023-10-31) -- "Eye Holes" 133s Copyright (C) 2023 The R Foundation for Statistical Computing 133s Platform: aarch64-unknown-linux-gnu (64-bit) 133s 133s R is free software and comes with ABSOLUTELY NO WARRANTY. 133s You are welcome to redistribute it under certain conditions. 133s Type 'license()' or 'licence()' for distribution details. 133s 133s R is a collaborative project with many contributors. 133s Type 'contributors()' for more information and 133s 'citation()' on how to cite R or R packages in publications. 133s 133s Type 'demo()' for some demos, 'help()' for on-line help, or 133s 'help.start()' for an HTML browser interface to help. 133s Type 'q()' to quit R. 133s 133s > library('BSgenome') 133s Loading required package: BiocGenerics 133s 133s Attaching package: ‘BiocGenerics’ 133s 133s The following objects are masked from ‘package:stats’: 133s 133s IQR, mad, sd, var, xtabs 133s 133s The following objects are masked from ‘package:base’: 133s 133s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 133s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 133s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 133s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 133s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 133s table, tapply, union, unique, unsplit, which.max, which.min 133s 133s Loading required package: S4Vectors 133s Loading required package: stats4 134s 134s Attaching package: ‘S4Vectors’ 134s 134s The following object is masked from ‘package:utils’: 134s 134s findMatches 134s 134s The following objects are masked from ‘package:base’: 134s 134s expand.grid, I, unname 134s 134s Loading required package: IRanges 135s Loading required package: GenomeInfoDb 135s Loading required package: GenomicRanges 136s Loading required package: Biostrings 136s Loading required package: XVector 136s 136s Attaching package: ‘Biostrings’ 136s 136s The following object is masked from ‘package:base’: 136s 136s strsplit 136s 136s Loading required package: BiocIO 136s Loading required package: rtracklayer 141s 141s Attaching package: ‘rtracklayer’ 141s 141s The following object is masked from ‘package:BiocIO’: 141s 141s FileForFormat 141s 142s > 142s > 142s Other tests are currently unsupported! 142s They will be progressively added. 142s autopkgtest [13:40:58]: test pkg-r-autopkgtest: -----------------------] 144s pkg-r-autopkgtest PASS 144s autopkgtest [13:41:00]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 144s autopkgtest [13:41:00]: @@@@@@@@@@@@@@@@@@@@ summary 144s pkg-r-autopkgtest PASS 162s Creating nova instance adt-noble-arm64-r-bioc-bsgenome-20240316-133835-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...