0s autopkgtest [17:23:38]: starting date and time: 2024-03-16 17:23:38+0000 0s autopkgtest [17:23:38]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:23:38]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qqp16ogy/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-biostrings --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-22.secgroup --name adt-noble-arm64-r-bioc-biostrings-20240316-172338-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 136s autopkgtest [17:25:54]: testbed dpkg architecture: arm64 136s autopkgtest [17:25:54]: testbed apt version: 2.7.12 136s autopkgtest [17:25:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 138s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 139s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 139s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 141s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 141s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 141s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 141s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 141s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 141s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 141s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 142s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 142s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 142s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 144s Fetched 9060 kB in 5s (1812 kB/s) 144s Reading package lists... 148s Reading package lists... 149s Building dependency tree... 149s Reading state information... 150s Calculating upgrade... 151s The following packages will be REMOVED: 151s libglib2.0-0 libssl3 151s The following NEW packages will be installed: 151s libglib2.0-0t64 libssl3t64 xdg-user-dirs 151s The following packages have been kept back: 151s curl 151s The following packages will be upgraded: 151s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 151s ubuntu-minimal ubuntu-standard 151s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 151s Need to get 4613 kB of archives. 151s After this operation, 211 kB of additional disk space will be used. 151s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 151s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 151s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 151s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 151s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 151s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 151s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 151s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 151s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 151s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 153s Fetched 4613 kB in 1s (5656 kB/s) 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 153s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 153s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 153s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 153s udisks2 depends on libglib2.0-0 (>= 2.77.0). 153s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 153s python3-gi depends on libglib2.0-0 (>= 2.77.0). 153s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 153s netplan.io depends on libglib2.0-0 (>= 2.70.0). 153s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 153s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 153s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 153s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 153s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 153s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 153s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 153s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 153s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 153s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 153s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 153s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 153s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 153s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 153s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 153s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 153s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 153s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 153s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 153s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 153s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 153s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 153s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 153s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 153s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 153s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 153s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 153s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 153s fwupd depends on libglib2.0-0 (>= 2.79.0). 153s bolt depends on libglib2.0-0 (>= 2.56.0). 153s 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 153s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 153s Selecting previously unselected package libglib2.0-0t64:arm64. 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 153s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 153s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 153s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 153s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 154s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 154s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 154s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 154s wget depends on libssl3 (>= 3.0.0). 154s u-boot-tools depends on libssl3 (>= 3.0.0). 154s tnftp depends on libssl3 (>= 3.0.0). 154s tcpdump depends on libssl3 (>= 3.0.0). 154s systemd-resolved depends on libssl3 (>= 3.0.0). 154s systemd depends on libssl3 (>= 3.0.0). 154s sudo depends on libssl3 (>= 3.0.0). 154s sbsigntool depends on libssl3 (>= 3.0.0). 154s rsync depends on libssl3 (>= 3.0.0). 154s python3-cryptography depends on libssl3 (>= 3.0.0). 154s openssh-server depends on libssl3 (>= 3.0.10). 154s openssh-client depends on libssl3 (>= 3.0.10). 154s mtd-utils depends on libssl3 (>= 3.0.0). 154s mokutil depends on libssl3 (>= 3.0.0). 154s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 154s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 154s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 154s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 154s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 154s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 154s libnvme1 depends on libssl3 (>= 3.0.0). 154s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 154s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 154s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 154s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 154s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 154s kmod depends on libssl3 (>= 3.0.0). 154s dhcpcd-base depends on libssl3 (>= 3.0.0). 154s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 154s 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 154s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 154s Selecting previously unselected package libssl3t64:arm64. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 154s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 154s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 154s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 154s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 155s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 155s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 155s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 155s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 155s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 155s Unpacking ubuntu-minimal (1.536) over (1.535) ... 155s Selecting previously unselected package xdg-user-dirs. 155s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 155s Unpacking xdg-user-dirs (0.18-1) ... 156s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 156s Unpacking ubuntu-standard (1.536) over (1.535) ... 156s Setting up ubuntu-minimal (1.536) ... 156s Setting up xdg-user-dirs (0.18-1) ... 156s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 156s Setting up libtirpc-common (1.3.4+ds-1.1) ... 156s Setting up ubuntu-standard (1.536) ... 156s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 156s No schema files found: doing nothing. 156s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 156s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 156s Setting up openssl (3.0.13-0ubuntu1) ... 156s Setting up readline-common (8.2-3.1) ... 156s Processing triggers for man-db (2.12.0-3) ... 156s Processing triggers for install-info (7.1-3) ... 157s Processing triggers for libc-bin (2.39-0ubuntu2) ... 158s Reading package lists... 159s Building dependency tree... 159s Reading state information... 160s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 164s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 164s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 164s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 164s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 168s Reading package lists... 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 169s Calculating upgrade... 169s The following packages have been kept back: 169s curl 170s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 171s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 183s autopkgtest [17:26:41]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 183s autopkgtest [17:26:41]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biostrings 187s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biostrings 2.70.2+dfsg-1 (dsc) [2280 B] 187s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biostrings 2.70.2+dfsg-1 (tar) [12.2 MB] 187s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biostrings 2.70.2+dfsg-1 (diff) [5236 B] 187s gpgv: Signature made Mon Feb 5 08:58:09 2024 UTC 187s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 187s gpgv: issuer "tille@debian.org" 187s gpgv: Can't check signature: No public key 187s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biostrings_2.70.2+dfsg-1.dsc: no acceptable signature found 189s autopkgtest [17:26:47]: testing package r-bioc-biostrings version 2.70.2+dfsg-1 189s autopkgtest [17:26:47]: build not needed 192s autopkgtest [17:26:50]: test pkg-r-autopkgtest: preparing testbed 196s Reading package lists... 196s Building dependency tree... 196s Reading state information... 197s Starting pkgProblemResolver with broken count: 0 197s Starting 2 pkgProblemResolver with broken count: 0 197s Done 198s The following additional packages will be installed: 198s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 198s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 198s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 198s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 198s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 198s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 198s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 198s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 198s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 198s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 198s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 198s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 198s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 198s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 198s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 198s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 198s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 198s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 198s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 198s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 198s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 198s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 198s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 198s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 198s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 198s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 198s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 198s libzzip-0-13 linux-libc-dev node-bootstrap-sass node-html5shiv 198s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 198s pkgconf-bin r-base-core r-base-dev r-bioc-affy r-bioc-affyio 198s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 198s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 198s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 198s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 198s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 198s r-bioc-preprocesscore r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 198s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 198s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 198s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 198s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 198s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 198s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 198s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 198s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 198s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 198s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 198s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 198s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 198s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 198s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 198s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 198s r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang 198s r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny 198s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 198s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 198s r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 198s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 198s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 198s xdg-utils zip zlib1g-dev 198s Suggested packages: 198s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 198s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 198s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 198s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 198s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 198s libboost-context1.83-dev libboost-contract1.83-dev 198s libboost-coroutine1.83-dev libboost-date-time1.83-dev 198s libboost-exception1.83-dev libboost-fiber1.83-dev 198s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 198s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 198s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 198s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 198s libboost-numpy1.83-dev libboost-program-options1.83-dev 198s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 198s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 198s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 198s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 198s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 198s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 198s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 198s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 198s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 198s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 198s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 198s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 198s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 198s r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 198s r-bioc-variantannotation r-bioc-shortread r-cran-batchtools 198s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-hdf5array 198s r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-cran-r.utils 198s r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown 198s r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats 198s r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr 198s r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-getopt 198s r-cran-formattable r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins 198s r-cran-scales r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline 198s r-cran-rmpi r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio 198s r-cran-callr r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm 198s r-cran-zoo debhelper ghostscript gv | postscript-viewer perl-tk xpdf 198s | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc 198s wp2latex 198s Recommended packages: 198s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 198s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 198s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 198s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 198s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 198s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 198s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 198s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 198s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo 198s r-cran-cairo r-cran-markdown r-cran-ragg r-cran-jpeg r-cran-readr 198s r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick r-cran-reticulate 198s r-cran-rgl r-cran-tikzdevice r-cran-svglite node-highlight.js r-cran-lintr 198s r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-lubridate 198s r-cran-future r-cran-usethis r-cran-dygraphs r-cran-dbitest r-cran-gert 198s r-cran-gh r-cran-rvest r-cran-data.table r-cran-mockr r-cran-formattable 198s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 198s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 198s x11-xserver-utils 199s The following packages will be REMOVED: 199s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 199s The following NEW packages will be installed: 199s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 199s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 199s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 199s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 199s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 199s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 199s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 199s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 199s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 199s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 199s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 199s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 199s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 199s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 199s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 199s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 199s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 199s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 199s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 199s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 199s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 199s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 199s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 199s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 199s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 199s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 199s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 199s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 199s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 199s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 199s r-bioc-affy r-bioc-affyio r-bioc-annotationdbi r-bioc-biobase 199s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 199s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 199s r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata 199s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 199s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-preprocesscore 199s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 199s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 199s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 199s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 199s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 199s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 199s r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis 199s r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 199s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 199s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 199s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 199s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 199s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 199s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 199s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 199s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp 199s r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 199s r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny r-cran-snow 199s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble 199s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 199s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 199s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 199s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 199s zlib1g-dev 199s The following packages will be upgraded: 199s curl 199s 1 upgraded, 284 newly installed, 5 to remove and 0 not upgraded. 199s Need to get 424 MB/424 MB of archives. 199s After this operation, 1342 MB of additional disk space will be used. 199s Get:1 /tmp/autopkgtest.drAgAt/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [800 B] 199s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 199s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 199s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 199s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 199s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 199s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 199s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 199s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 200s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 200s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 200s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 200s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 200s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 200s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 200s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 200s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 200s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 200s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 200s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 200s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 200s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 200s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 200s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 200s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 200s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 200s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 200s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 200s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 200s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 200s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 201s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 201s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 201s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 201s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 201s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 201s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 201s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 201s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 201s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 201s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 201s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 201s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 201s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 201s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 201s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 202s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 202s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 202s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 202s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 202s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 202s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 202s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 202s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 202s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 202s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 202s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 202s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 202s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 202s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 202s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 202s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 202s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 202s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 202s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 202s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 202s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 202s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 202s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 202s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 202s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 202s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 202s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 202s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 202s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 202s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 202s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 202s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 203s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 203s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 203s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 203s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 203s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 203s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 203s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 203s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 203s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 203s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 203s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 203s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 203s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 203s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 203s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 203s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 203s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 203s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 203s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 203s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 203s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 203s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 203s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 203s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 203s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 203s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 204s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 204s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 204s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 204s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 204s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 204s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 204s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 204s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 204s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 204s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 204s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 204s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 204s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 204s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 204s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 204s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 204s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 204s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 204s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 204s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 204s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 204s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 204s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 204s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 204s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 204s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 204s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 204s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 204s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 204s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 204s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 204s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 204s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 204s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 204s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 204s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 204s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 204s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 204s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 204s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 205s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 205s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 205s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 205s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 205s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 205s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 205s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 206s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 206s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 206s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 206s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 206s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 206s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 206s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affyio arm64 1.72.0-1 [87.1 kB] 206s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 206s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-preprocesscore arm64 1.64.0+ds-1 [147 kB] 206s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affy arm64 1.80.0-1 [1350 kB] 206s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 206s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 206s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 206s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 206s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 206s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 206s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 206s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 206s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 206s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 206s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 206s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 206s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 206s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 206s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 206s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 207s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 207s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 207s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 207s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 207s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 207s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 207s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 207s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 207s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 207s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 207s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 207s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 207s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 207s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 207s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 207s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 207s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 207s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 208s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 208s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 208s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 208s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 208s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 208s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 208s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 208s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 208s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 208s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 208s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 209s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 209s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 209s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 209s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 209s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 209s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 209s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 209s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 209s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 209s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 209s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 209s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 209s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 209s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 209s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 209s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 209s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 209s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 209s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 209s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 209s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 209s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 209s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 209s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 209s Get:231 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 209s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 209s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 209s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 209s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 209s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 209s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 209s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 209s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 209s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 209s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 209s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 209s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 210s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 210s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 210s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 210s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 210s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 210s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 210s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 210s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 210s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 210s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 210s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 210s Get:255 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 210s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 210s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 211s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 211s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 213s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 213s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 213s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 213s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 213s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 213s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 213s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 213s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 213s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 213s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 213s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 213s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 213s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 213s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 213s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 213s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 213s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 213s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 213s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 214s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 214s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 214s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 214s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 214s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 214s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 214s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 215s Preconfiguring packages ... 216s Fetched 424 MB in 15s (27.6 MB/s) 216s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 216s wget depends on libpsl5 (>= 0.16.0). 216s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 216s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 216s 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 216s Removing libpsl5:arm64 (0.21.2-1build1) ... 216s Selecting previously unselected package libpsl5t64:arm64. 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 216s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 216s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 216s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 216s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 216s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 216s Selecting previously unselected package libcurl4t64:arm64. 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 216s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 216s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 216s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 216s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 216s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 216s 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 216s Removing libpng16-16:arm64 (1.6.43-1) ... 216s Selecting previously unselected package libpng16-16t64:arm64. 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 216s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 216s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 216s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 216s parted depends on libreadline8 (>= 6.0). 216s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 216s gpgsm depends on libreadline8 (>= 6.0). 216s gpgconf depends on libreadline8 (>= 6.0). 216s gpg depends on libreadline8 (>= 6.0). 216s gawk depends on libreadline8 (>= 6.0). 216s fdisk depends on libreadline8 (>= 6.0). 216s 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 217s Removing libreadline8:arm64 (8.2-3) ... 217s Selecting previously unselected package libreadline8t64:arm64. 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 217s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 217s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 217s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 217s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 217s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 217s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 217s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 217s lsof depends on libtirpc3 (>= 1.0.2). 217s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 217s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 217s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 217s iproute2 depends on libtirpc3 (>= 1.0.2). 217s 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 217s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 217s Selecting previously unselected package libtirpc3t64:arm64. 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 217s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 217s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 217s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 217s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 218s Selecting previously unselected package libc-dev-bin. 218s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 218s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 218s Selecting previously unselected package linux-libc-dev:arm64. 218s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 218s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 219s Selecting previously unselected package libcrypt-dev:arm64. 219s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 219s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 219s Selecting previously unselected package libtirpc-dev:arm64. 219s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 219s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 219s Selecting previously unselected package libnsl-dev:arm64. 219s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 219s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 219s Selecting previously unselected package rpcsvc-proto. 219s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 219s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 219s Selecting previously unselected package libc6-dev:arm64. 219s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 219s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 219s Selecting previously unselected package libisl23:arm64. 220s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 220s Unpacking libisl23:arm64 (0.26-3) ... 220s Selecting previously unselected package libmpc3:arm64. 220s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 220s Unpacking libmpc3:arm64 (1.3.1-1) ... 220s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 220s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 220s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 220s Selecting previously unselected package cpp-13. 220s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 220s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 220s Selecting previously unselected package cpp-aarch64-linux-gnu. 220s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 220s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 220s Selecting previously unselected package cpp. 220s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 221s Unpacking cpp (4:13.2.0-7ubuntu1) ... 221s Selecting previously unselected package libcc1-0:arm64. 221s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 221s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 221s Selecting previously unselected package libgomp1:arm64. 221s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 221s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 221s Selecting previously unselected package libitm1:arm64. 221s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 221s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 221s Selecting previously unselected package libatomic1:arm64. 221s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 221s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 221s Selecting previously unselected package libasan8:arm64. 221s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 221s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 221s Selecting previously unselected package liblsan0:arm64. 221s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 221s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 221s Selecting previously unselected package libtsan2:arm64. 221s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 221s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package libubsan1:arm64. 222s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 222s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package libhwasan0:arm64. 222s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 222s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package libgcc-13-dev:arm64. 222s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 222s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 222s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 222s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 222s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 223s Selecting previously unselected package gcc-13. 223s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 223s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 223s Selecting previously unselected package gcc-aarch64-linux-gnu. 223s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 223s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 223s Selecting previously unselected package gcc. 223s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 223s Unpacking gcc (4:13.2.0-7ubuntu1) ... 223s Selecting previously unselected package libstdc++-13-dev:arm64. 223s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 223s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 223s Selecting previously unselected package g++-13-aarch64-linux-gnu. 223s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 223s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 224s Selecting previously unselected package g++-13. 224s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 224s Unpacking g++-13 (13.2.0-17ubuntu2) ... 224s Selecting previously unselected package g++-aarch64-linux-gnu. 224s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 224s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 224s Selecting previously unselected package g++. 224s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 224s Unpacking g++ (4:13.2.0-7ubuntu1) ... 224s Selecting previously unselected package build-essential. 224s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 224s Unpacking build-essential (12.10ubuntu1) ... 224s Selecting previously unselected package dctrl-tools. 224s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 224s Unpacking dctrl-tools (2.24-3build2) ... 224s Selecting previously unselected package fonts-dejavu-mono. 224s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 224s Unpacking fonts-dejavu-mono (2.37-8) ... 224s Selecting previously unselected package fonts-dejavu-core. 224s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 224s Unpacking fonts-dejavu-core (2.37-8) ... 224s Selecting previously unselected package fontconfig-config. 224s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 225s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 225s Selecting previously unselected package libfontconfig1:arm64. 225s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 225s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 225s Selecting previously unselected package fontconfig. 225s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 225s Unpacking fontconfig (2.15.0-1ubuntu1) ... 225s Selecting previously unselected package fonts-font-awesome. 225s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 225s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 225s Selecting previously unselected package fonts-glyphicons-halflings. 225s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 225s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 225s Selecting previously unselected package fonts-lmodern. 225s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 225s Unpacking fonts-lmodern (2.005-1) ... 225s Selecting previously unselected package fonts-mathjax. 225s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 225s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 225s Selecting previously unselected package libgfortran5:arm64. 225s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 225s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 225s Selecting previously unselected package libgfortran-13-dev:arm64. 225s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 225s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 225s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 225s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 225s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 226s Selecting previously unselected package gfortran-13. 226s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 226s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 226s Selecting previously unselected package gfortran-aarch64-linux-gnu. 226s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 226s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 226s Selecting previously unselected package gfortran. 226s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 226s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 226s Selecting previously unselected package icu-devtools. 226s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 226s Unpacking icu-devtools (74.2-1ubuntu1) ... 226s Selecting previously unselected package javascript-common. 226s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 226s Unpacking javascript-common (11+nmu1) ... 226s Selecting previously unselected package libio-string-perl. 226s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 226s Unpacking libio-string-perl (1.08-4) ... 226s Selecting previously unselected package liblatex-tounicode-perl. 226s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 226s Unpacking liblatex-tounicode-perl (0.54-2) ... 226s Selecting previously unselected package libbibtex-parser-perl. 226s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 226s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 226s Selecting previously unselected package libblas3:arm64. 226s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 226s Unpacking libblas3:arm64 (3.12.0-3) ... 226s Selecting previously unselected package libblas-dev:arm64. 226s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 226s Unpacking libblas-dev:arm64 (3.12.0-3) ... 227s Selecting previously unselected package libboost1.83-dev:arm64. 227s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 227s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 229s Selecting previously unselected package libboost-dev:arm64. 229s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 229s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 229s Selecting previously unselected package libbz2-dev:arm64. 229s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 229s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 229s Selecting previously unselected package libpixman-1-0:arm64. 230s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 230s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 230s Selecting previously unselected package libxcb-render0:arm64. 230s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 230s Unpacking libxcb-render0:arm64 (1.15-1) ... 230s Selecting previously unselected package libxcb-shm0:arm64. 230s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 230s Unpacking libxcb-shm0:arm64 (1.15-1) ... 230s Selecting previously unselected package libxrender1:arm64. 230s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 230s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 230s Selecting previously unselected package libcairo2:arm64. 231s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 231s Unpacking libcairo2:arm64 (1.18.0-1) ... 231s Selecting previously unselected package libdatrie1:arm64. 231s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 231s Unpacking libdatrie1:arm64 (0.2.13-3) ... 231s Selecting previously unselected package libdeflate0:arm64. 231s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 231s Unpacking libdeflate0:arm64 (1.19-1) ... 231s Selecting previously unselected package libgraphite2-3:arm64. 231s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 231s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 231s Selecting previously unselected package libharfbuzz0b:arm64. 231s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 231s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 231s Selecting previously unselected package x11-common. 231s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 231s Unpacking x11-common (1:7.7+23ubuntu2) ... 231s Selecting previously unselected package libice6:arm64. 231s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 231s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 231s Selecting previously unselected package libicu-dev:arm64. 232s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 232s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 232s Selecting previously unselected package libjpeg-turbo8:arm64. 232s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 232s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 232s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 233s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 233s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 233s Selecting previously unselected package libjpeg8:arm64. 233s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 233s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 233s Selecting previously unselected package libjpeg8-dev:arm64. 233s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 233s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 233s Selecting previously unselected package libjpeg-dev:arm64. 233s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 233s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 233s Selecting previously unselected package libjs-bootstrap. 234s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 234s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 234s Selecting previously unselected package libjs-popper.js. 234s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 234s Unpacking libjs-popper.js (1.16.1+ds-6) ... 234s Selecting previously unselected package libjs-bootstrap4. 234s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 234s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 234s Selecting previously unselected package libjs-d3. 234s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 234s Unpacking libjs-d3 (3.5.17-4) ... 234s Selecting previously unselected package libjs-es5-shim. 235s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 235s Unpacking libjs-es5-shim (4.6.7-2) ... 235s Selecting previously unselected package libjs-highlight.js. 235s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 235s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 235s Selecting previously unselected package libjs-jquery. 235s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 235s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 235s Selecting previously unselected package libjs-jquery-datatables. 235s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 235s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 235s Selecting previously unselected package libjs-sifter.js. 235s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 235s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 235s Selecting previously unselected package libjs-microplugin.js. 235s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 235s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 235s Selecting previously unselected package libjs-jquery-selectize.js. 235s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 235s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 235s Selecting previously unselected package libjs-jquery-ui. 235s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 235s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 235s Selecting previously unselected package libjs-json. 235s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 235s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 235s Selecting previously unselected package libjs-lunr. 235s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 235s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 235s Selecting previously unselected package libjs-prettify. 235s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 235s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 235s Selecting previously unselected package libkpathsea6:arm64. 235s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 235s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 235s Selecting previously unselected package liblapack3:arm64. 235s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 235s Unpacking liblapack3:arm64 (3.12.0-3) ... 235s Selecting previously unselected package liblapack-dev:arm64. 236s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 236s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 236s Selecting previously unselected package liblerc4:arm64. 236s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 236s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 236s Selecting previously unselected package liblua5.4-0:arm64. 236s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 236s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 236s Selecting previously unselected package libncurses-dev:arm64. 236s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 236s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 236s Selecting previously unselected package libthai-data. 236s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 236s Unpacking libthai-data (0.1.29-2) ... 236s Selecting previously unselected package libthai0:arm64. 236s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 236s Unpacking libthai0:arm64 (0.1.29-2) ... 236s Selecting previously unselected package libpango-1.0-0:arm64. 236s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 236s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 236s Selecting previously unselected package libpangoft2-1.0-0:arm64. 237s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 237s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 237s Selecting previously unselected package libpangocairo-1.0-0:arm64. 237s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 237s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 237s Selecting previously unselected package libpaper1:arm64. 237s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 237s Unpacking libpaper1:arm64 (1.1.29) ... 237s Selecting previously unselected package libpaper-utils. 237s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 237s Unpacking libpaper-utils (1.1.29) ... 237s Selecting previously unselected package libpcre2-16-0:arm64. 237s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 237s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 237s Selecting previously unselected package libpcre2-32-0:arm64. 237s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 237s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 237s Selecting previously unselected package libpcre2-posix3:arm64. 237s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 237s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 237s Selecting previously unselected package libpcre2-dev:arm64. 237s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 237s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 237s Selecting previously unselected package libpkgconf3:arm64. 237s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 237s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 237s Selecting previously unselected package zlib1g-dev:arm64. 237s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 237s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 237s Selecting previously unselected package libpng-dev:arm64. 237s Preparing to unpack .../111-libpng-dev_1.6.43-3_arm64.deb ... 237s Unpacking libpng-dev:arm64 (1.6.43-3) ... 237s Selecting previously unselected package libpotrace0:arm64. 237s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 237s Unpacking libpotrace0:arm64 (1.16-2) ... 237s Selecting previously unselected package libptexenc1:arm64. 237s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 237s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 237s Selecting previously unselected package libreadline-dev:arm64. 237s Preparing to unpack .../114-libreadline-dev_8.2-3.1_arm64.deb ... 237s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 238s Selecting previously unselected package libsharpyuv0:arm64. 238s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 238s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 238s Selecting previously unselected package libsm6:arm64. 238s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 238s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 238s Selecting previously unselected package libsynctex2:arm64. 238s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 238s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 238s Selecting previously unselected package libtcl8.6:arm64. 238s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 238s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 238s Selecting previously unselected package libteckit0:arm64. 238s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 238s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 238s Selecting previously unselected package libtexlua53-5:arm64. 238s Preparing to unpack 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libxss1:arm64 (1:1.2.3-1build2) ... 238s Selecting previously unselected package libtk8.6:arm64. 238s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 238s Unpacking libtk8.6:arm64 (8.6.13-2) ... 238s Selecting previously unselected package libxt6t64:arm64. 239s Preparing to unpack .../127-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 239s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 239s Selecting previously unselected package libxmu6:arm64. 239s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 239s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 239s Selecting previously unselected package libxpm4:arm64. 239s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 239s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 239s Selecting previously unselected package libxaw7:arm64. 239s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 239s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 239s Selecting previously unselected package libxi6:arm64. 239s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 239s Unpacking libxi6:arm64 (2:1.8.1-1) ... 239s Selecting previously unselected package libzzip-0-13:arm64. 239s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 239s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 239s Selecting previously unselected package node-bootstrap-sass. 239s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 239s Unpacking node-bootstrap-sass (3.4.3-2) ... 239s Selecting previously unselected package node-html5shiv. 239s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 239s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 239s Selecting previously unselected package node-normalize.css. 239s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 239s Unpacking node-normalize.css (8.0.1-5) ... 239s Selecting previously unselected package pandoc-data. 239s Preparing to unpack .../136-pandoc-data_3.1.3-1_all.deb ... 239s Unpacking pandoc-data (3.1.3-1) ... 239s Selecting previously unselected package pandoc. 239s Preparing to unpack .../137-pandoc_3.1.3+ds-2_arm64.deb ... 239s Unpacking pandoc (3.1.3+ds-2) ... 240s Selecting previously unselected package pkgconf-bin. 240s Preparing to unpack .../138-pkgconf-bin_1.8.1-2_arm64.deb ... 240s Unpacking pkgconf-bin (1.8.1-2) ... 240s Selecting previously unselected package pkgconf:arm64. 240s Preparing to unpack .../139-pkgconf_1.8.1-2_arm64.deb ... 240s Unpacking pkgconf:arm64 (1.8.1-2) ... 240s Selecting previously unselected package pkg-config:arm64. 240s Preparing to unpack .../140-pkg-config_1.8.1-2_arm64.deb ... 240s Unpacking pkg-config:arm64 (1.8.1-2) ... 240s Selecting previously unselected package zip. 240s Preparing to unpack .../141-zip_3.0-13_arm64.deb ... 240s Unpacking zip (3.0-13) ... 240s Selecting previously unselected package unzip. 241s Preparing to unpack .../142-unzip_6.0-28ubuntu3_arm64.deb ... 241s Unpacking unzip (6.0-28ubuntu3) ... 241s Selecting previously unselected package xdg-utils. 241s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 241s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 241s Selecting previously unselected package r-base-core. 241s Preparing to unpack .../144-r-base-core_4.3.3-2build1_arm64.deb ... 241s Unpacking r-base-core (4.3.3-2build1) ... 241s Selecting previously unselected package liblzma-dev:arm64. 241s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ... 241s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 241s Selecting previously unselected package r-base-dev. 241s Preparing to unpack .../146-r-base-dev_4.3.3-2build1_all.deb ... 241s Unpacking r-base-dev (4.3.3-2build1) ... 241s Selecting previously unselected package pkg-r-autopkgtest. 241s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 241s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 241s Selecting previously unselected package r-bioc-biocgenerics. 241s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 241s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 241s Selecting previously unselected package r-bioc-biobase. 241s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_arm64.deb ... 241s Unpacking r-bioc-biobase (2.62.0-1) ... 241s Selecting previously unselected package r-bioc-zlibbioc. 241s Preparing to unpack .../150-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 241s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 241s Selecting previously unselected package r-bioc-affyio. 241s Preparing to unpack .../151-r-bioc-affyio_1.72.0-1_arm64.deb ... 241s Unpacking r-bioc-affyio (1.72.0-1) ... 241s Selecting previously unselected package r-cran-biocmanager. 241s Preparing to unpack .../152-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 241s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 241s Selecting previously unselected package r-bioc-preprocesscore. 241s Preparing to unpack .../153-r-bioc-preprocesscore_1.64.0+ds-1_arm64.deb ... 241s Unpacking r-bioc-preprocesscore (1.64.0+ds-1) ... 242s Selecting previously unselected package r-bioc-affy. 242s Preparing to unpack .../154-r-bioc-affy_1.80.0-1_arm64.deb ... 242s Unpacking r-bioc-affy (1.80.0-1) ... 242s Selecting previously unselected package r-bioc-s4vectors. 242s Preparing to unpack .../155-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 242s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 242s Selecting previously unselected package r-bioc-iranges. 242s Preparing to unpack .../156-r-bioc-iranges_2.36.0-1_arm64.deb ... 242s Unpacking r-bioc-iranges (2.36.0-1) ... 242s Selecting previously unselected package r-cran-dbi. 242s Preparing to unpack .../157-r-cran-dbi_1.2.2-1_all.deb ... 242s Unpacking r-cran-dbi (1.2.2-1) ... 242s Selecting previously unselected package r-cran-bit. 242s Preparing to unpack .../158-r-cran-bit_4.0.5-1_arm64.deb ... 242s Unpacking r-cran-bit (4.0.5-1) ... 242s Selecting previously unselected package r-cran-bit64. 242s Preparing to unpack .../159-r-cran-bit64_4.0.5-1_arm64.deb ... 242s Unpacking r-cran-bit64 (4.0.5-1) ... 242s Selecting previously unselected package r-cran-rlang. 242s Preparing to unpack .../160-r-cran-rlang_1.1.3-1_arm64.deb ... 242s Unpacking r-cran-rlang (1.1.3-1) ... 242s Selecting previously unselected package r-cran-cli. 242s Preparing to unpack .../161-r-cran-cli_3.6.2-1_arm64.deb ... 242s Unpacking r-cran-cli (3.6.2-1) ... 242s Selecting previously unselected package r-cran-glue. 243s Preparing to unpack .../162-r-cran-glue_1.7.0-1_arm64.deb ... 243s Unpacking r-cran-glue (1.7.0-1) ... 243s Selecting previously unselected package r-cran-lifecycle. 243s Preparing to unpack .../163-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 243s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 243s Selecting previously unselected package r-cran-vctrs. 243s Preparing to unpack .../164-r-cran-vctrs_0.6.5-1_arm64.deb ... 243s Unpacking r-cran-vctrs (0.6.5-1) ... 243s Selecting previously unselected package r-cran-blob. 243s Preparing to unpack .../165-r-cran-blob_1.2.4-1_all.deb ... 243s Unpacking r-cran-blob (1.2.4-1) ... 243s Selecting previously unselected package r-cran-fastmap. 243s Preparing to unpack .../166-r-cran-fastmap_1.1.1-1_arm64.deb ... 243s Unpacking r-cran-fastmap (1.1.1-1) ... 243s Selecting previously unselected package r-cran-cachem. 243s Preparing to unpack .../167-r-cran-cachem_1.0.8-1_arm64.deb ... 243s Unpacking r-cran-cachem (1.0.8-1) ... 243s Selecting previously unselected package r-cran-memoise. 243s Preparing to unpack .../168-r-cran-memoise_2.0.1-1_all.deb ... 243s Unpacking r-cran-memoise (2.0.1-1) ... 243s Selecting previously unselected package r-cran-pkgconfig. 243s Preparing to unpack .../169-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 243s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 243s Selecting previously unselected package r-cran-plogr. 243s Preparing to unpack .../170-r-cran-plogr_0.2.0-3build1_all.deb ... 243s Unpacking r-cran-plogr (0.2.0-3build1) ... 243s Selecting previously unselected package r-cran-cpp11. 243s Preparing to unpack .../171-r-cran-cpp11_0.4.7-1_all.deb ... 243s Unpacking r-cran-cpp11 (0.4.7-1) ... 243s Selecting previously unselected package r-cran-rsqlite. 243s Preparing to unpack .../172-r-cran-rsqlite_2.3.4-1_arm64.deb ... 243s Unpacking r-cran-rsqlite (2.3.4-1) ... 243s Selecting previously unselected package r-cran-curl. 243s Preparing to unpack .../173-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 243s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 243s Selecting previously unselected package r-cran-jsonlite. 243s Preparing to unpack .../174-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 243s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 243s Selecting previously unselected package r-cran-mime. 243s Preparing to unpack .../175-r-cran-mime_0.12-1_arm64.deb ... 243s Unpacking r-cran-mime (0.12-1) ... 243s Selecting previously unselected package r-cran-sys. 243s Preparing to unpack .../176-r-cran-sys_3.4.2-1_arm64.deb ... 243s Unpacking r-cran-sys (3.4.2-1) ... 243s Selecting previously unselected package r-cran-askpass. 243s Preparing to unpack .../177-r-cran-askpass_1.2.0-1_arm64.deb ... 243s Unpacking r-cran-askpass (1.2.0-1) ... 243s Selecting previously unselected package r-cran-openssl. 243s Preparing to unpack .../178-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 243s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 243s Selecting previously unselected package r-cran-r6. 243s Preparing to unpack .../179-r-cran-r6_2.5.1-1_all.deb ... 243s Unpacking r-cran-r6 (2.5.1-1) ... 243s Selecting previously unselected package r-cran-httr. 243s Preparing to unpack .../180-r-cran-httr_1.4.7+dfsg-1_all.deb ... 243s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 243s Selecting previously unselected package r-cran-png. 243s Preparing to unpack .../181-r-cran-png_0.1-8-1_arm64.deb ... 243s Unpacking r-cran-png (0.1-8-1) ... 244s Selecting previously unselected package r-bioc-xvector. 244s Preparing to unpack .../182-r-bioc-xvector_0.42.0-1_arm64.deb ... 244s Unpacking r-bioc-xvector (0.42.0-1) ... 244s Selecting previously unselected package r-cran-bitops. 244s Preparing to unpack .../183-r-cran-bitops_1.0-7-1_arm64.deb ... 244s Unpacking r-cran-bitops (1.0-7-1) ... 244s Selecting previously unselected package r-cran-rcurl. 244s Preparing to unpack .../184-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 244s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 244s Selecting previously unselected package r-bioc-genomeinfodbdata. 244s Preparing to unpack .../185-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 244s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 245s Selecting previously unselected package r-bioc-genomeinfodb. 245s Preparing to unpack .../186-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 245s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 245s Selecting previously unselected package r-cran-crayon. 245s Preparing to unpack .../187-r-cran-crayon_1.5.2-1_all.deb ... 245s Unpacking r-cran-crayon (1.5.2-1) ... 245s Selecting previously unselected package r-bioc-biostrings. 245s Preparing to unpack .../188-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 245s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 245s Selecting previously unselected package r-bioc-keggrest. 245s Preparing to unpack .../189-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 245s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 245s Selecting previously unselected package r-bioc-annotationdbi. 246s Preparing to unpack .../190-r-bioc-annotationdbi_1.64.1-1_all.deb ... 246s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 246s Selecting previously unselected package r-cran-generics. 246s Preparing to unpack .../191-r-cran-generics_0.1.3-1_all.deb ... 246s Unpacking r-cran-generics (0.1.3-1) ... 246s Selecting previously unselected package r-cran-magrittr. 246s Preparing to unpack .../192-r-cran-magrittr_2.0.3-1_arm64.deb ... 246s Unpacking r-cran-magrittr (2.0.3-1) ... 246s Selecting previously unselected package r-cran-fansi. 246s Preparing to unpack .../193-r-cran-fansi_1.0.5-1_arm64.deb ... 246s Unpacking r-cran-fansi (1.0.5-1) ... 246s Selecting previously unselected package r-cran-utf8. 246s Preparing to unpack .../194-r-cran-utf8_1.2.4-1_arm64.deb ... 246s Unpacking r-cran-utf8 (1.2.4-1) ... 246s Selecting previously unselected package r-cran-pillar. 246s Preparing to unpack .../195-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 246s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 246s Selecting previously unselected package r-cran-tibble. 246s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 246s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 246s Selecting previously unselected package r-cran-withr. 246s Preparing to unpack .../197-r-cran-withr_2.5.0-1_all.deb ... 246s Unpacking r-cran-withr (2.5.0-1) ... 246s Selecting previously unselected package r-cran-tidyselect. 246s Preparing to unpack .../198-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 246s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 246s Selecting previously unselected package r-cran-dplyr. 247s Preparing to unpack .../199-r-cran-dplyr_1.1.4-1_arm64.deb ... 247s Unpacking r-cran-dplyr (1.1.4-1) ... 247s Selecting previously unselected package r-cran-purrr. 247s Preparing to unpack .../200-r-cran-purrr_1.0.2-1_arm64.deb ... 247s Unpacking r-cran-purrr (1.0.2-1) ... 247s Selecting previously unselected package r-cran-stringi. 247s Preparing to unpack .../201-r-cran-stringi_1.8.3-1_arm64.deb ... 247s Unpacking r-cran-stringi (1.8.3-1) ... 247s Selecting previously unselected package r-cran-stringr. 247s Preparing to unpack .../202-r-cran-stringr_1.5.1-1_all.deb ... 247s Unpacking r-cran-stringr (1.5.1-1) ... 247s Selecting previously unselected package r-cran-tidyr. 247s Preparing to unpack .../203-r-cran-tidyr_1.3.1-1_arm64.deb ... 247s Unpacking r-cran-tidyr (1.3.1-1) ... 247s Selecting previously unselected package r-cran-dbplyr. 247s Preparing to unpack .../204-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 247s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 247s Selecting previously unselected package r-cran-filelock. 247s Preparing to unpack .../205-r-cran-filelock_1.0.3-1_arm64.deb ... 247s Unpacking r-cran-filelock (1.0.3-1) ... 247s Selecting previously unselected package r-bioc-biocfilecache. 247s Preparing to unpack .../206-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 247s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 247s Selecting previously unselected package r-bioc-biocio. 247s Preparing to unpack .../207-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 247s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 247s Selecting previously unselected package r-cran-formatr. 247s Preparing to unpack .../208-r-cran-formatr_1.14-1_all.deb ... 247s Unpacking r-cran-formatr (1.14-1) ... 247s Selecting previously unselected package r-cran-lambda.r. 247s Preparing to unpack .../209-r-cran-lambda.r_1.2.4-2build1_all.deb ... 247s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 247s Selecting previously unselected package r-cran-futile.options. 247s Preparing to unpack .../210-r-cran-futile.options_1.0.1-3build1_all.deb ... 247s Unpacking r-cran-futile.options (1.0.1-3build1) ... 247s Selecting previously unselected package r-cran-futile.logger. 247s Preparing to unpack .../211-r-cran-futile.logger_1.4.3-4build1_all.deb ... 247s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 247s Selecting previously unselected package r-cran-snow. 247s Preparing to unpack .../212-r-cran-snow_1%3a0.4.4-2_all.deb ... 247s Unpacking r-cran-snow (1:0.4.4-2) ... 247s Selecting previously unselected package r-cran-codetools. 247s Preparing to unpack .../213-r-cran-codetools_0.2-19-1_all.deb ... 247s Unpacking r-cran-codetools (0.2-19-1) ... 247s Selecting previously unselected package r-cran-bh. 247s Preparing to unpack .../214-r-cran-bh_1.84.0-1_all.deb ... 247s Unpacking r-cran-bh (1.84.0-1) ... 247s Selecting previously unselected package r-bioc-biocparallel. 247s Preparing to unpack .../215-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 247s Unpacking r-bioc-biocparallel (1.36.0-1) ... 247s Selecting previously unselected package r-cran-base64enc. 247s Preparing to unpack .../216-r-cran-base64enc_0.1-3-3_arm64.deb ... 247s Unpacking r-cran-base64enc (0.1-3-3) ... 247s Selecting previously unselected package r-cran-digest. 247s Preparing to unpack .../217-r-cran-digest_0.6.34-1_arm64.deb ... 247s Unpacking r-cran-digest (0.6.34-1) ... 247s Selecting previously unselected package r-cran-ellipsis. 247s Preparing to unpack .../218-r-cran-ellipsis_0.3.2-2_arm64.deb ... 247s Unpacking r-cran-ellipsis (0.3.2-2) ... 247s Selecting previously unselected package r-cran-htmltools. 248s Preparing to unpack .../219-r-cran-htmltools_0.5.7-1_arm64.deb ... 248s Unpacking r-cran-htmltools (0.5.7-1) ... 248s Selecting previously unselected package r-cran-evaluate. 248s Preparing to unpack .../220-r-cran-evaluate_0.23-1_all.deb ... 248s Unpacking r-cran-evaluate (0.23-1) ... 248s Selecting previously unselected package r-cran-xfun. 248s Preparing to unpack .../221-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 248s Unpacking r-cran-xfun (0.41+dfsg-1) ... 248s Selecting previously unselected package r-cran-highr. 248s Preparing to unpack .../222-r-cran-highr_0.10+dfsg-1_all.deb ... 248s Unpacking r-cran-highr (0.10+dfsg-1) ... 248s Selecting previously unselected package r-cran-yaml. 248s Preparing to unpack .../223-r-cran-yaml_2.3.8-1_arm64.deb ... 248s Unpacking r-cran-yaml (2.3.8-1) ... 248s Selecting previously unselected package libjs-mathjax. 248s Preparing to unpack .../224-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 248s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 248s Selecting previously unselected package r-cran-knitr. 248s Preparing to unpack .../225-r-cran-knitr_1.45+dfsg-1_all.deb ... 248s Unpacking r-cran-knitr (1.45+dfsg-1) ... 248s Selecting previously unselected package r-cran-jquerylib. 248s Preparing to unpack .../226-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 248s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 248s Selecting previously unselected package r-cran-fs. 248s Preparing to unpack .../227-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 248s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 249s Selecting previously unselected package r-cran-rappdirs. 249s Preparing to unpack .../228-r-cran-rappdirs_0.3.3-1_arm64.deb ... 249s Unpacking r-cran-rappdirs (0.3.3-1) ... 249s Selecting previously unselected package r-cran-sass. 249s Preparing to unpack .../229-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 249s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 249s Selecting previously unselected package r-cran-bslib. 249s Preparing to unpack .../230-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 249s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 249s Selecting previously unselected package r-cran-fontawesome. 249s Preparing to unpack .../231-r-cran-fontawesome_0.5.2-1_all.deb ... 249s Unpacking r-cran-fontawesome (0.5.2-1) ... 249s Selecting previously unselected package r-cran-tinytex. 249s Preparing to unpack .../232-r-cran-tinytex_0.49-1_all.deb ... 249s Unpacking r-cran-tinytex (0.49-1) ... 249s Selecting previously unselected package libjs-modernizr. 249s Preparing to unpack .../233-libjs-modernizr_2.6.2+ds1-5_all.deb ... 249s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 249s Selecting previously unselected package r-cran-littler. 249s Preparing to unpack .../234-r-cran-littler_0.3.19-1_arm64.deb ... 249s Unpacking r-cran-littler (0.3.19-1) ... 249s Selecting previously unselected package r-cran-pkgkitten. 249s Preparing to unpack .../235-r-cran-pkgkitten_0.2.3-1_all.deb ... 249s Unpacking r-cran-pkgkitten (0.2.3-1) ... 249s Selecting previously unselected package r-cran-rcpp. 249s Preparing to unpack .../236-r-cran-rcpp_1.0.12-1_arm64.deb ... 249s Unpacking r-cran-rcpp (1.0.12-1) ... 249s Selecting previously unselected package r-cran-later. 249s Preparing to unpack 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/etc/R/Renviron with new version 260s Setting up r-cran-crayon (1.5.2-1) ... 260s Setting up r-cran-sourcetools (0.1.7-1-1) ... 260s Setting up r-cran-futile.options (1.0.1-3build1) ... 260s Setting up r-cran-lattice (0.22-5-1) ... 260s Setting up r-cran-formatr (1.14-1) ... 260s Setting up r-cran-xml (3.99-0.16.1-1) ... 260s Setting up texlive-binaries (2023.20230311.66589-9) ... 260s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 260s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 260s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 260s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 260s Setting up r-cran-commonmark (1.9.1-1) ... 260s Setting up r-cran-r6 (2.5.1-1) ... 260s Setting up r-cran-pkgkitten (0.2.3-1) ... 260s Setting up texlive-base (2023.20240207-1) ... 261s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 261s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 261s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 261s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 262s Setting up r-cran-magrittr (2.0.3-1) ... 262s Setting up r-cran-rappdirs (0.3.3-1) ... 262s Setting up r-cran-filelock (1.0.3-1) ... 262s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 262s Setting up r-cran-littler (0.3.19-1) ... 262s Setting up r-cran-bh (1.84.0-1) ... 262s Setting up r-cran-fs (1.6.3+dfsg-1) ... 262s Setting up r-cran-rcpp (1.0.12-1) ... 262s Setting up r-cran-curl (5.2.0+dfsg-1) ... 262s Setting up r-cran-codetools (0.2-19-1) ... 262s Setting up r-bioc-biocgenerics (0.48.1-2) ... 262s Setting up r-cran-rlang (1.1.3-1) ... 262s Setting up r-cran-matrixstats (1.2.0-1) ... 262s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 262s Setting up r-cran-xfun (0.41+dfsg-1) ... 262s Setting up r-cran-sys (3.4.2-1) ... 262s Setting up r-cran-plogr (0.2.0-3build1) ... 262s Setting up r-cran-withr (2.5.0-1) ... 262s Setting up r-cran-mime (0.12-1) ... 262s Setting up r-cran-generics (0.1.3-1) ... 262s Setting up r-cran-base64enc (0.1-3-3) ... 262s Setting up r-cran-abind (1.4-5-2) ... 262s Setting up r-cran-digest (0.6.34-1) ... 262s Setting up r-cran-yaml (2.3.8-1) ... 262s Setting up r-cran-lambda.r (1.2.4-2build1) ... 262s Setting up r-cran-evaluate (0.23-1) ... 262s Setting up r-cran-dbi (1.2.2-1) ... 262s Setting up r-cran-highr (0.10+dfsg-1) ... 262s Setting up r-cran-prettyunits (1.2.0-1) ... 262s Setting up r-cran-fansi (1.0.5-1) ... 262s Setting up r-cran-snow (1:0.4.4-2) ... 262s Setting up r-cran-glue (1.7.0-1) ... 262s Setting up r-cran-bit (4.0.5-1) ... 262s Setting up r-cran-xtable (1:1.8-4-2) ... 262s Setting up r-cran-cli (3.6.2-1) ... 262s Setting up gfortran (4:13.2.0-7ubuntu1) ... 262s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 262s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 262s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 262s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 262s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 262s Setting up r-cran-bitops (1.0-7-1) ... 262s Setting up r-cran-bit64 (4.0.5-1) ... 262s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 262s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 262s Setting up r-cran-askpass (1.2.0-1) ... 262s Setting up r-cran-fastmap (1.1.1-1) ... 262s Setting up r-cran-png (0.1-8-1) ... 262s Setting up r-bioc-biobase (2.62.0-1) ... 262s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 262s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 262s Setting up r-cran-utf8 (1.2.4-1) ... 262s Setting up r-cran-stringi (1.8.3-1) ... 262s Setting up texlive-latex-base (2023.20240207-1) ... 262s Setting up r-cran-cpp11 (0.4.7-1) ... 262s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 262s Setting up r-cran-runit (0.4.32-3) ... 262s Setting up r-cran-futile.logger (1.4.3-4build1) ... 262s Setting up r-cran-later (1.3.2+dfsg-1) ... 262s Setting up r-cran-matrix (1.6-5-1) ... 262s Setting up r-cran-tinytex (0.49-1) ... 262s Setting up r-cran-knitr (1.45+dfsg-1) ... 262s Setting up g++ (4:13.2.0-7ubuntu1) ... 262s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 262s Setting up r-cran-cachem (1.0.8-1) ... 262s Setting up build-essential (12.10ubuntu1) ... 262s Setting up r-bioc-preprocesscore (1.64.0+ds-1) ... 262s Setting up r-bioc-iranges (2.36.0-1) ... 262s Setting up r-cran-rjson (0.2.21-1) ... 262s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 262s Setting up r-cran-restfulr (0.0.15-1) ... 262s Setting up r-cran-vctrs (0.6.5-1) ... 262s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 262s Setting up r-cran-ellipsis (0.3.2-2) ... 262s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 262s Setting up r-bioc-affyio (1.72.0-1) ... 262s Setting up r-base-dev (4.3.3-2build1) ... 262s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 262s Setting up r-cran-stringr (1.5.1-1) ... 262s Setting up r-bioc-biocparallel (1.36.0-1) ... 262s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 262s Setting up r-cran-xml2 (1.3.6-1) ... 262s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 262s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 262s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 262s Setting up texlive-bibtex-extra (2023.20240207-1) ... 262s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 262s Setting up r-cran-httr (1.4.7+dfsg-1) ... 262s Setting up r-bioc-affy (1.80.0-1) ... 262s Setting up r-cran-hms (1.1.3-1) ... 262s Setting up r-cran-memoise (2.0.1-1) ... 262s Setting up r-cran-promises (1.2.1+dfsg-1) ... 262s Setting up r-cran-purrr (1.0.2-1) ... 262s Setting up r-cran-blob (1.2.4-1) ... 262s Setting up r-cran-htmltools (0.5.7-1) ... 262s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 262s Setting up r-bioc-xvector (0.42.0-1) ... 262s Setting up r-cran-sass (0.4.8+dfsg-1) ... 262s Setting up r-cran-dplyr (1.1.4-1) ... 262s Setting up r-cran-rsqlite (2.3.4-1) ... 262s Setting up r-cran-progress (1.2.3-1) ... 262s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 262s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 262s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 262s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 262s Setting up r-cran-fontawesome (0.5.2-1) ... 262s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 262s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 262s Setting up r-cran-tidyr (1.3.1-1) ... 262s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 262s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 262s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 262s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 262s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 262s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 262s Setting up r-bioc-annotationdbi (1.64.1-1) ... 262s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 262s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 262s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 262s Setting up r-bioc-genomicalignments (1.38.2-1) ... 262s Setting up r-cran-bookdown (0.37+dfsg-1) ... 262s Setting up r-bioc-rtracklayer (1.62.0-1) ... 262s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 262s Setting up r-bioc-bsgenome (1.70.2-1) ... 262s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 262s Setting up autopkgtest-satdep (0) ... 262s Processing triggers for man-db (2.12.0-3) ... 263s Processing triggers for install-info (7.1-3) ... 263s Processing triggers for libc-bin (2.39-0ubuntu2) ... 263s Processing triggers for tex-common (6.18) ... 263s Running updmap-sys. This may take some time... done. 263s Running mktexlsr /var/lib/texmf ... done. 263s Building format(s) --all. 300s This may take some time... done. 315s (Reading database ... 124268 files and directories currently installed.) 315s Removing autopkgtest-satdep (0) ... 315s autopkgtest [17:28:53]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 315s autopkgtest [17:28:53]: test pkg-r-autopkgtest: [----------------------- 316s Test: Try to load the R library Biostrings 316s 316s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 316s Copyright (C) 2024 The R Foundation for Statistical Computing 316s Platform: aarch64-unknown-linux-gnu (64-bit) 316s 316s R is free software and comes with ABSOLUTELY NO WARRANTY. 316s You are welcome to redistribute it under certain conditions. 316s Type 'license()' or 'licence()' for distribution details. 316s 316s R is a collaborative project with many contributors. 316s Type 'contributors()' for more information and 316s 'citation()' on how to cite R or R packages in publications. 316s 316s Type 'demo()' for some demos, 'help()' for on-line help, or 316s 'help.start()' for an HTML browser interface to help. 316s Type 'q()' to quit R. 316s 316s > library('Biostrings') 316s Loading required package: BiocGenerics 317s 317s Attaching package: ‘BiocGenerics’ 317s 317s The following objects are masked from ‘package:stats’: 317s 317s IQR, mad, sd, var, xtabs 317s 317s The following objects are masked from ‘package:base’: 317s 317s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 317s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 317s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 317s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 317s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 317s table, tapply, union, unique, unsplit, which.max, which.min 317s 317s Loading required package: S4Vectors 317s Loading required package: stats4 317s 317s Attaching package: ‘S4Vectors’ 317s 317s The following object is masked from ‘package:utils’: 317s 317s findMatches 317s 317s The following objects are masked from ‘package:base’: 317s 317s expand.grid, I, unname 317s 317s Loading required package: IRanges 318s Loading required package: XVector 318s Loading required package: GenomeInfoDb 319s 319s Attaching package: ‘Biostrings’ 319s 319s The following object is masked from ‘package:base’: 319s 319s strsplit 319s 319s > 319s > 320s Other tests are currently unsupported! 320s They will be progressively added. 321s autopkgtest [17:28:59]: test pkg-r-autopkgtest: -----------------------] 323s pkg-r-autopkgtest PASS 323s autopkgtest [17:29:01]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 325s autopkgtest [17:29:03]: @@@@@@@@@@@@@@@@@@@@ summary 325s pkg-r-autopkgtest PASS 336s Creating nova instance adt-noble-arm64-r-bioc-biostrings-20240316-172338-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...