0s autopkgtest [17:23:25]: starting date and time: 2024-03-16 17:23:25+0000
  0s autopkgtest [17:23:25]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [17:23:25]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cxo83xgt/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-biomart --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-23.secgroup --name adt-noble-arm64-r-bioc-biomart-20240316-172325-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
120s autopkgtest [17:25:25]: testbed dpkg architecture: arm64
120s autopkgtest [17:25:25]: testbed apt version: 2.7.12
120s autopkgtest [17:25:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup
120s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
121s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
121s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
121s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB]
121s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB]
121s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
121s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
121s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
121s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
121s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB]
121s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
121s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB]
121s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
123s Fetched 9060 kB in 2s (5067 kB/s)
124s Reading package lists...
127s Reading package lists...
128s Building dependency tree...
128s Reading state information...
128s Calculating upgrade...
129s The following packages will be REMOVED:
129s   libglib2.0-0 libssl3
129s The following NEW packages will be installed:
129s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
129s The following packages have been kept back:
129s   curl
129s The following packages will be upgraded:
129s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
129s   ubuntu-minimal ubuntu-standard
129s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
129s Need to get 4613 kB of archives.
129s After this operation, 211 kB of additional disk space will be used.
129s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
129s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
130s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
130s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
130s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
130s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
130s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
130s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
130s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
130s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
133s Fetched 4613 kB in 1s (5217 kB/s)
133s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
133s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
133s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
133s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
133s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
133s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
133s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
133s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
133s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
133s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
133s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
133s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
133s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
133s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
133s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
133s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
133s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
133s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
133s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
133s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
133s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
133s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
133s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
133s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  fwupd depends on libglib2.0-0 (>= 2.79.0).
133s  bolt depends on libglib2.0-0 (>= 2.56.0).
133s 
133s (Reading database ... 
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133s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
134s Selecting previously unselected package libglib2.0-0t64:arm64.
134s (Reading database ... 
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(Reading database ... 74733 files and directories currently installed.)
134s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
134s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
134s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
134s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
134s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
134s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
134s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
134s  wget depends on libssl3 (>= 3.0.0).
134s  u-boot-tools depends on libssl3 (>= 3.0.0).
134s  tnftp depends on libssl3 (>= 3.0.0).
134s  tcpdump depends on libssl3 (>= 3.0.0).
134s  systemd-resolved depends on libssl3 (>= 3.0.0).
134s  systemd depends on libssl3 (>= 3.0.0).
134s  sudo depends on libssl3 (>= 3.0.0).
134s  sbsigntool depends on libssl3 (>= 3.0.0).
134s  rsync depends on libssl3 (>= 3.0.0).
134s  python3-cryptography depends on libssl3 (>= 3.0.0).
134s  openssh-server depends on libssl3 (>= 3.0.10).
134s  openssh-client depends on libssl3 (>= 3.0.10).
134s  mtd-utils depends on libssl3 (>= 3.0.0).
134s  mokutil depends on libssl3 (>= 3.0.0).
134s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
134s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
134s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
134s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
134s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
134s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
134s  libnvme1 depends on libssl3 (>= 3.0.0).
134s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
134s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
134s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
134s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
134s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
134s  kmod depends on libssl3 (>= 3.0.0).
134s  dhcpcd-base depends on libssl3 (>= 3.0.0).
134s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
134s 
135s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
135s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
135s Selecting previously unselected package libssl3t64:arm64.
135s (Reading database ... 
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(Reading database ... 74747 files and directories currently installed.)
135s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
135s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
135s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
135s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
135s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ...
135s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
135s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ...
135s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
135s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ...
135s Unpacking ubuntu-minimal (1.536) over (1.535) ...
135s Selecting previously unselected package xdg-user-dirs.
135s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ...
135s Unpacking xdg-user-dirs (0.18-1) ...
135s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ...
135s Unpacking ubuntu-standard (1.536) over (1.535) ...
135s Setting up ubuntu-minimal (1.536) ...
135s Setting up xdg-user-dirs (0.18-1) ...
135s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
135s Setting up libtirpc-common (1.3.4+ds-1.1) ...
135s Setting up ubuntu-standard (1.536) ...
135s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
135s No schema files found: doing nothing.
135s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
135s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
135s Setting up openssl (3.0.13-0ubuntu1) ...
135s Setting up readline-common (8.2-3.1) ...
135s Processing triggers for man-db (2.12.0-3) ...
136s Processing triggers for install-info (7.1-3) ...
136s Processing triggers for libc-bin (2.39-0ubuntu2) ...
137s Reading package lists...
137s Building dependency tree...
137s Reading state information...
138s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
139s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
139s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
139s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
139s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
141s Reading package lists...
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
141s Calculating upgrade...
142s The following packages have been kept back:
142s   curl
142s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
142s Reading package lists...
142s Building dependency tree...
142s Reading state information...
143s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
152s autopkgtest [17:25:57]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
152s autopkgtest [17:25:57]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biomart
154s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biomart 2.58.2+dfsg-1 (dsc) [2242 B]
154s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biomart 2.58.2+dfsg-1 (tar) [118 kB]
154s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biomart 2.58.2+dfsg-1 (diff) [6100 B]
155s gpgv: Signature made Mon Feb  5 08:46:49 2024 UTC
155s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
155s gpgv:                issuer "tille@debian.org"
155s gpgv: Can't check signature: No public key
155s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biomart_2.58.2+dfsg-1.dsc: no acceptable signature found
155s autopkgtest [17:26:00]: testing package r-bioc-biomart version 2.58.2+dfsg-1
155s autopkgtest [17:26:00]: build not needed
157s autopkgtest [17:26:02]: test pkg-r-autopkgtest: preparing testbed
158s Reading package lists...
159s Building dependency tree...
159s Reading state information...
159s Starting pkgProblemResolver with broken count: 0
159s Starting 2 pkgProblemResolver with broken count: 0
159s Done
160s The following additional packages will be installed:
160s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
160s   curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core
160s   fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings
160s   fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu
160s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
160s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
160s   gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8
160s   libatomic1 libbibtex-parser-perl libblas-dev libblas3 libbz2-dev
160s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64
160s   libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev
160s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
160s   libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
160s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
160s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
160s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
160s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
160s   libjs-popper.js libjs-prettify libjs-sifter.js
160s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
160s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
160s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
160s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
160s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
160s   libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev
160s   libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6
160s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
160s   libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0
160s   libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64
160s   libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv
160s   node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf
160s   pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase
160s   r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biomart
160s   r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges
160s   r-bioc-keggrest r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc
160s   r-cran-askpass r-cran-base64enc r-cran-biocmanager r-cran-bit r-cran-bit64
160s   r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib
160s   r-cran-cachem r-cran-callr r-cran-cli r-cran-commonmark r-cran-cpp11
160s   r-cran-crayon r-cran-crul r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc
160s   r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate
160s   r-cran-fansi r-cran-fastmap r-cran-fauxpas r-cran-filelock
160s   r-cran-fontawesome r-cran-fs r-cran-generics r-cran-glue r-cran-highr
160s   r-cran-hms r-cran-htmltools r-cran-httpcode r-cran-httpuv r-cran-httr
160s   r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle
160s   r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime r-cran-mockery
160s   r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
160s   r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise
160s   r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps
160s   r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl
160s   r-cran-rematch2 r-cran-rlang r-cran-rmarkdown r-cran-rprojroot
160s   r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi
160s   r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr
160s   r-cran-tidyselect r-cran-tinytex r-cran-triebeard r-cran-urltools
160s   r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-webmockr r-cran-whisker
160s   r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml
160s   rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra
160s   texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip
160s   zlib1g-dev
160s Suggested packages:
160s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
160s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
160s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2
160s   | lighttpd | httpd liblapack-doc glibc-doc icu-doc libjs-jquery-ui-docs
160s   fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc
160s   readline-doc libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended
160s   texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context
160s   wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex
160s   citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib
160s   r-base-html texlive-plain-generic texlive-fonts-recommended
160s   texlive-fonts-extra texlive-extra-utils texinfo r-bioc-go.db r-cran-runit
160s   r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-bioc-rtracklayer
160s   r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools r-bioc-affy
160s   r-bioc-deseq2 r-bioc-annotate r-bioc-bsgenome r-bioc-genomicfeatures
160s   r-cran-r.utils r-cran-data.table r-bioc-genomicalignments r-cran-markdown
160s   r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread r-cran-roxygen2
160s   r-cran-ff r-cran-covr r-cran-spelling r-cran-rstudioapi r-cran-rmysql
160s   r-cran-lubridate r-cran-getopt r-cran-formattable r-cran-ggplot2
160s   r-cran-nanotime r-cran-palmerpenguins r-cran-scales r-cran-survival
160s   r-cran-units r-cran-vdiffr r-cran-inline r-cran-bench r-cran-here r-cran-plm
160s   r-cran-zoo debhelper ghostscript gv | postscript-viewer perl-tk xpdf
160s   | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc
160s   wp2latex
160s Recommended packages:
160s   bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools
160s   r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit
160s   r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect
160s   r-cran-testit r-cran-tufte r-cran-webshot r-cran-covr r-cran-ggplot2
160s   r-cran-thematic r-cran-cliapp r-cran-whoami r-cran-bench r-cran-decor
160s   r-cran-lobstr r-cran-scales r-cran-spelling r-cran-webutils
160s   r-cran-rpostgresql r-cran-gh r-cran-broom r-cran-rmysql r-cran-lattice
160s   r-cran-unitizer r-cran-rsvg r-cran-cairo r-cran-markdown r-cran-ragg
160s   r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf r-cran-codetools
160s   r-cran-formatr r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl
160s   r-cran-tikzdevice r-cran-svglite node-highlight.js r-cran-lintr
160s   r-cran-tidyverse r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr
160s   r-cran-webfakes r-cran-future r-cran-pingr r-cran-usethis r-cran-dygraphs
160s   r-cran-dbitest r-cran-gert r-cran-rvest r-cran-data.table r-cran-formattable
160s   r-cran-pkgdown r-cran-zeallot r-cran-vcr r-cran-renv r-cran-runit lmodern
160s   dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
160s   x11-utils x11-xserver-utils
160s The following packages will be REMOVED:
160s   libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3
160s The following NEW packages will be installed:
160s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
160s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
160s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
160s   fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13
160s   g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
160s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
160s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
160s   javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev
160s   libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev
160s   libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
160s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
160s   libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0
160s   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
160s   libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
160s   libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js
160s   libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js
160s   libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js
160s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
160s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
160s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
160s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
160s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
160s   libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev
160s   libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6
160s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
160s   libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0
160s   libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64
160s   libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv
160s   node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf
160s   pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase
160s   r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biomart
160s   r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges
160s   r-bioc-keggrest r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc
160s   r-cran-askpass r-cran-base64enc r-cran-biocmanager r-cran-bit r-cran-bit64
160s   r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib
160s   r-cran-cachem r-cran-callr r-cran-cli r-cran-commonmark r-cran-cpp11
160s   r-cran-crayon r-cran-crul r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc
160s   r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate
160s   r-cran-fansi r-cran-fastmap r-cran-fauxpas r-cran-filelock
160s   r-cran-fontawesome r-cran-fs r-cran-generics r-cran-glue r-cran-highr
160s   r-cran-hms r-cran-htmltools r-cran-httpcode r-cran-httpuv r-cran-httr
160s   r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle
160s   r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime r-cran-mockery
160s   r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
160s   r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise
160s   r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps
160s   r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl
160s   r-cran-rematch2 r-cran-rlang r-cran-rmarkdown r-cran-rprojroot
160s   r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi
160s   r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr
160s   r-cran-tidyselect r-cran-tinytex r-cran-triebeard r-cran-urltools
160s   r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-webmockr r-cran-whisker
160s   r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml
160s   rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra
160s   texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip
160s   zlib1g-dev
160s The following packages will be upgraded:
160s   curl
160s 1 upgraded, 273 newly installed, 5 to remove and 0 not upgraded.
160s Need to get 379 MB/379 MB of archives.
160s After this operation, 1130 MB of additional disk space will be used.
160s Get:1 /tmp/autopkgtest.4jNAaL/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [768 B]
160s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB]
160s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB]
161s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB]
161s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB]
161s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB]
161s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB]
161s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
161s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
161s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
161s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB]
161s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
161s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
161s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
161s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
161s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
161s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
161s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
161s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
161s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
161s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
161s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
161s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
161s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
161s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
161s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
161s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
161s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
161s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
161s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
161s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
162s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
162s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
162s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
162s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
162s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
163s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
163s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
163s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
163s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
163s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
163s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
163s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
163s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
163s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
163s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
163s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
163s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
163s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB]
163s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
163s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
163s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
163s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
163s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
163s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
163s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
163s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
163s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B]
163s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB]
163s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB]
163s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB]
163s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
163s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
163s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
163s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
163s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
163s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
163s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
163s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
163s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
163s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
163s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
163s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
163s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
163s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
163s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
164s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
164s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
164s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
164s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
164s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
164s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
164s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
164s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
164s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB]
164s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
164s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
164s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
164s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
164s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
164s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
164s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
164s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
164s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
164s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
164s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
164s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB]
164s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
164s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
164s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
164s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB]
164s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
164s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
164s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
164s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
164s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
164s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
164s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
164s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
164s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
164s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
164s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
164s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
164s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
164s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
165s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB]
165s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB]
165s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB]
165s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB]
165s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
165s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
165s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB]
165s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
165s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB]
165s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB]
165s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
165s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
165s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
165s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
165s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
165s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
165s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB]
165s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB]
165s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB]
165s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB]
165s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB]
165s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB]
165s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
165s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
165s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
165s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB]
166s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB]
166s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B]
166s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB]
166s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
166s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
166s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB]
166s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB]
167s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
167s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
167s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
167s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
167s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B]
167s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
167s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
167s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB]
167s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB]
167s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB]
167s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB]
167s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB]
167s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB]
167s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB]
167s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB]
167s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB]
167s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
167s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
167s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB]
167s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB]
167s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB]
167s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
167s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
167s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
167s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB]
167s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB]
167s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB]
167s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB]
167s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB]
167s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB]
167s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB]
167s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB]
167s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
167s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
167s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB]
167s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
167s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB]
168s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB]
168s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB]
168s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
168s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
168s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB]
168s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB]
169s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
169s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
169s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB]
169s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
169s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
169s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
169s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
169s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB]
169s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB]
169s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB]
169s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB]
169s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB]
169s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB]
169s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB]
169s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB]
170s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB]
170s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB]
170s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB]
170s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB]
170s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB]
170s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB]
170s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB]
170s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB]
170s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB]
170s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
170s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB]
170s Get:218 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
170s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
170s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
170s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB]
170s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB]
170s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB]
170s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
170s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
170s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB]
170s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
170s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
170s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB]
170s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB]
170s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB]
170s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB]
170s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
170s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB]
170s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB]
170s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
170s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
170s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
170s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB]
170s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
173s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB]
173s Get:242 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB]
173s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB]
174s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB]
175s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB]
175s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB]
178s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB]
178s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB]
178s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB]
178s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB]
178s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB]
178s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB]
178s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB]
178s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB]
178s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB]
178s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB]
178s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB]
178s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-triebeard arm64 0.4.1-1 [149 kB]
178s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-urltools arm64 1.7.3+dfsg-2 [244 kB]
178s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpcode all 0.3.0-2build1 [34.5 kB]
178s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crul all 1.4.0+dfsg-1 [834 kB]
178s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
178s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
178s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-whisker all 0.4.1-1 [62.7 kB]
178s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fauxpas all 0.5.2+dfsg-1 [1049 kB]
179s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB]
179s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB]
179s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB]
179s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
179s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
179s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB]
179s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB]
179s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mockery all 0.4.4+dfsg-1 [41.3 kB]
179s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-webmockr all 0.9.0-1 [660 kB]
182s Preconfiguring packages ...
182s Fetched 379 MB in 19s (20.4 MB/s)
182s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested:
182s  wget depends on libpsl5 (>= 0.16.0).
182s  libcurl4:arm64 depends on libpsl5 (>= 0.16.0).
182s  libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0).
182s 
182s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 15%
(Reading database ... 20%
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(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
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182s Removing libpsl5:arm64 (0.21.2-1build1) ...
182s Selecting previously unselected package libpsl5t64:arm64.
182s (Reading database ... 
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182s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ...
182s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ...
183s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ...
183s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
183s (Reading database ... 
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183s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ...
183s Selecting previously unselected package libcurl4t64:arm64.
184s (Reading database ... 
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184s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ...
184s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
189s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested:
189s  libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2).
189s  libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1).
189s 
189s (Reading database ... 
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189s Removing libpng16-16:arm64 (1.6.43-1) ...
190s Selecting previously unselected package libpng16-16t64:arm64.
190s (Reading database ... 
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190s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ...
190s Unpacking libpng16-16t64:arm64 (1.6.43-3) ...
192s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested:
192s  parted depends on libreadline8 (>= 6.0).
192s  libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
192s  gpgsm depends on libreadline8 (>= 6.0).
192s  gpgconf depends on libreadline8 (>= 6.0).
192s  gpg depends on libreadline8 (>= 6.0).
192s  gawk depends on libreadline8 (>= 6.0).
192s  fdisk depends on libreadline8 (>= 6.0).
192s 
192s (Reading database ... 
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192s Removing libreadline8:arm64 (8.2-3) ...
193s Selecting previously unselected package libreadline8t64:arm64.
193s (Reading database ... 
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193s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ...
193s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
194s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
194s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
194s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
194s Unpacking libreadline8t64:arm64 (8.2-3.1) ...
194s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested:
194s  lsof depends on libtirpc3 (>= 1.0.2).
194s  libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
194s  libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2).
194s  libnsl2:arm64 depends on libtirpc3 (>= 1.0.2).
194s  iproute2 depends on libtirpc3 (>= 1.0.2).
194s 
194s (Reading database ... 
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194s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ...
194s Selecting previously unselected package libtirpc3t64:arm64.
194s (Reading database ... 
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194s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ...
194s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
194s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
195s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
195s Selecting previously unselected package libc-dev-bin.
195s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
195s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
195s Selecting previously unselected package linux-libc-dev:arm64.
195s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ...
195s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
195s Selecting previously unselected package libcrypt-dev:arm64.
196s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
196s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
196s Selecting previously unselected package libtirpc-dev:arm64.
196s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ...
196s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
196s Selecting previously unselected package libnsl-dev:arm64.
196s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ...
196s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
196s Selecting previously unselected package rpcsvc-proto.
197s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
197s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
197s Selecting previously unselected package libc6-dev:arm64.
197s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ...
197s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
197s Selecting previously unselected package libisl23:arm64.
197s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ...
197s Unpacking libisl23:arm64 (0.26-3) ...
197s Selecting previously unselected package libmpc3:arm64.
198s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ...
198s Unpacking libmpc3:arm64 (1.3.1-1) ...
198s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
198s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
198s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
198s Selecting previously unselected package cpp-13.
198s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
198s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
198s Selecting previously unselected package cpp-aarch64-linux-gnu.
199s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
199s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
199s Selecting previously unselected package cpp.
199s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
199s Unpacking cpp (4:13.2.0-7ubuntu1) ...
199s Selecting previously unselected package libcc1-0:arm64.
199s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
199s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
199s Selecting previously unselected package libgomp1:arm64.
199s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
199s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
199s Selecting previously unselected package libitm1:arm64.
200s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ...
200s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
200s Selecting previously unselected package libatomic1:arm64.
200s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
200s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
200s Selecting previously unselected package libasan8:arm64.
200s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ...
200s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
201s Selecting previously unselected package liblsan0:arm64.
201s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
201s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
201s Selecting previously unselected package libtsan2:arm64.
201s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
201s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
201s Selecting previously unselected package libubsan1:arm64.
201s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
201s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
202s Selecting previously unselected package libhwasan0:arm64.
202s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
202s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
202s Selecting previously unselected package libgcc-13-dev:arm64.
202s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
202s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
202s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
202s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
202s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
203s Selecting previously unselected package gcc-13.
203s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
203s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
203s Selecting previously unselected package gcc-aarch64-linux-gnu.
203s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
203s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
203s Selecting previously unselected package gcc.
203s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
203s Unpacking gcc (4:13.2.0-7ubuntu1) ...
204s Selecting previously unselected package libstdc++-13-dev:arm64.
204s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
204s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
204s Selecting previously unselected package g++-13-aarch64-linux-gnu.
204s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
204s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
204s Selecting previously unselected package g++-13.
204s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ...
204s Unpacking g++-13 (13.2.0-17ubuntu2) ...
204s Selecting previously unselected package g++-aarch64-linux-gnu.
205s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
205s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
205s Selecting previously unselected package g++.
205s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
205s Unpacking g++ (4:13.2.0-7ubuntu1) ...
206s Selecting previously unselected package build-essential.
206s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ...
206s Unpacking build-essential (12.10ubuntu1) ...
206s Selecting previously unselected package dctrl-tools.
206s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ...
206s Unpacking dctrl-tools (2.24-3build2) ...
206s Selecting previously unselected package fonts-dejavu-mono.
206s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
206s Unpacking fonts-dejavu-mono (2.37-8) ...
207s Selecting previously unselected package fonts-dejavu-core.
207s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
207s Unpacking fonts-dejavu-core (2.37-8) ...
207s Selecting previously unselected package fontconfig-config.
207s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
208s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
208s Selecting previously unselected package libfontconfig1:arm64.
208s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
208s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
208s Selecting previously unselected package fontconfig.
208s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
208s Unpacking fontconfig (2.15.0-1ubuntu1) ...
208s Selecting previously unselected package fonts-font-awesome.
208s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
208s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
208s Selecting previously unselected package fonts-glyphicons-halflings.
208s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
208s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
208s Selecting previously unselected package fonts-lmodern.
208s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ...
208s Unpacking fonts-lmodern (2.005-1) ...
208s Selecting previously unselected package fonts-mathjax.
208s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
208s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
208s Selecting previously unselected package libgfortran5:arm64.
209s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
209s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
209s Selecting previously unselected package libgfortran-13-dev:arm64.
209s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ...
209s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
209s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
209s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
209s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
209s Selecting previously unselected package gfortran-13.
210s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ...
210s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
210s Selecting previously unselected package gfortran-aarch64-linux-gnu.
210s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
210s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
210s Selecting previously unselected package gfortran.
210s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ...
210s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
210s Selecting previously unselected package icu-devtools.
211s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ...
211s Unpacking icu-devtools (74.2-1ubuntu1) ...
211s Selecting previously unselected package javascript-common.
211s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ...
211s Unpacking javascript-common (11+nmu1) ...
211s Selecting previously unselected package libio-string-perl.
211s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ...
211s Unpacking libio-string-perl (1.08-4) ...
211s Selecting previously unselected package liblatex-tounicode-perl.
212s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ...
212s Unpacking liblatex-tounicode-perl (0.54-2) ...
212s Selecting previously unselected package libbibtex-parser-perl.
212s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ...
212s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ...
212s Selecting previously unselected package libblas3:arm64.
212s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ...
212s Unpacking libblas3:arm64 (3.12.0-3) ...
213s Selecting previously unselected package libblas-dev:arm64.
213s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ...
213s Unpacking libblas-dev:arm64 (3.12.0-3) ...
214s Selecting previously unselected package libbz2-dev:arm64.
214s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ...
214s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
215s Selecting previously unselected package libpixman-1-0:arm64.
215s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_arm64.deb ...
215s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
215s Selecting previously unselected package libxcb-render0:arm64.
215s Preparing to unpack .../059-libxcb-render0_1.15-1_arm64.deb ...
215s Unpacking libxcb-render0:arm64 (1.15-1) ...
215s Selecting previously unselected package libxcb-shm0:arm64.
215s Preparing to unpack .../060-libxcb-shm0_1.15-1_arm64.deb ...
215s Unpacking libxcb-shm0:arm64 (1.15-1) ...
215s Selecting previously unselected package libxrender1:arm64.
216s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
216s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
216s Selecting previously unselected package libcairo2:arm64.
217s Preparing to unpack .../062-libcairo2_1.18.0-1_arm64.deb ...
217s Unpacking libcairo2:arm64 (1.18.0-1) ...
217s Selecting previously unselected package libdatrie1:arm64.
217s Preparing to unpack .../063-libdatrie1_0.2.13-3_arm64.deb ...
217s Unpacking libdatrie1:arm64 (0.2.13-3) ...
218s Selecting previously unselected package libdeflate0:arm64.
218s Preparing to unpack .../064-libdeflate0_1.19-1_arm64.deb ...
218s Unpacking libdeflate0:arm64 (1.19-1) ...
218s Selecting previously unselected package libgraphite2-3:arm64.
218s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_arm64.deb ...
218s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
218s Selecting previously unselected package libharfbuzz0b:arm64.
218s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_arm64.deb ...
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235s Preparing to unpack .../171-r-cran-sys_3.4.2-1_arm64.deb ...
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235s Selecting previously unselected package r-cran-askpass.
235s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_arm64.deb ...
235s Unpacking r-cran-askpass (1.2.0-1) ...
235s Selecting previously unselected package r-cran-openssl.
235s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ...
235s Unpacking r-cran-openssl (2.1.1+dfsg-2) ...
235s Selecting previously unselected package r-cran-r6.
235s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ...
235s Unpacking r-cran-r6 (2.5.1-1) ...
235s Selecting previously unselected package r-cran-httr.
235s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ...
235s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
235s Selecting previously unselected package r-cran-png.
235s Preparing to unpack .../176-r-cran-png_0.1-8-1_arm64.deb ...
235s Unpacking r-cran-png (0.1-8-1) ...
235s Selecting previously unselected package r-bioc-zlibbioc.
235s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
235s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
235s Selecting previously unselected package r-bioc-xvector.
235s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_arm64.deb ...
235s Unpacking r-bioc-xvector (0.42.0-1) ...
235s Selecting previously unselected package r-cran-bitops.
235s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_arm64.deb ...
235s Unpacking r-cran-bitops (1.0-7-1) ...
235s Selecting previously unselected package r-cran-rcurl.
236s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ...
236s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ...
236s Selecting previously unselected package r-bioc-genomeinfodbdata.
236s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
236s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
236s Selecting previously unselected package r-bioc-genomeinfodb.
236s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
236s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
236s Selecting previously unselected package r-cran-crayon.
236s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ...
236s Unpacking r-cran-crayon (1.5.2-1) ...
236s Selecting previously unselected package r-bioc-biostrings.
236s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ...
236s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
236s Selecting previously unselected package r-bioc-keggrest.
236s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ...
236s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ...
236s Selecting previously unselected package r-bioc-annotationdbi.
237s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ...
237s Unpacking r-bioc-annotationdbi (1.64.1-1) ...
237s Selecting previously unselected package r-cran-generics.
237s Preparing to unpack .../187-r-cran-generics_0.1.3-1_all.deb ...
237s Unpacking r-cran-generics (0.1.3-1) ...
237s Selecting previously unselected package r-cran-magrittr.
237s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_arm64.deb ...
237s Unpacking r-cran-magrittr (2.0.3-1) ...
237s Selecting previously unselected package r-cran-fansi.
237s Preparing to unpack .../189-r-cran-fansi_1.0.5-1_arm64.deb ...
237s Unpacking r-cran-fansi (1.0.5-1) ...
237s Selecting previously unselected package r-cran-utf8.
237s Preparing to unpack .../190-r-cran-utf8_1.2.4-1_arm64.deb ...
237s Unpacking r-cran-utf8 (1.2.4-1) ...
237s Selecting previously unselected package r-cran-pillar.
238s Preparing to unpack .../191-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
238s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
238s Selecting previously unselected package r-cran-tibble.
238s Preparing to unpack .../192-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ...
238s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
238s Selecting previously unselected package r-cran-withr.
238s Preparing to unpack .../193-r-cran-withr_2.5.0-1_all.deb ...
238s Unpacking r-cran-withr (2.5.0-1) ...
238s Selecting previously unselected package r-cran-tidyselect.
238s Preparing to unpack .../194-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ...
238s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
238s Selecting previously unselected package r-cran-dplyr.
238s Preparing to unpack .../195-r-cran-dplyr_1.1.4-1_arm64.deb ...
238s Unpacking r-cran-dplyr (1.1.4-1) ...
238s Selecting previously unselected package r-cran-purrr.
238s Preparing to unpack .../196-r-cran-purrr_1.0.2-1_arm64.deb ...
238s Unpacking r-cran-purrr (1.0.2-1) ...
238s Selecting previously unselected package r-cran-stringi.
238s Preparing to unpack .../197-r-cran-stringi_1.8.3-1_arm64.deb ...
238s Unpacking r-cran-stringi (1.8.3-1) ...
238s Selecting previously unselected package r-cran-stringr.
238s Preparing to unpack .../198-r-cran-stringr_1.5.1-1_all.deb ...
238s Unpacking r-cran-stringr (1.5.1-1) ...
238s Selecting previously unselected package r-cran-tidyr.
238s Preparing to unpack .../199-r-cran-tidyr_1.3.1-1_arm64.deb ...
238s Unpacking r-cran-tidyr (1.3.1-1) ...
238s Selecting previously unselected package r-cran-dbplyr.
238s Preparing to unpack .../200-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ...
238s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ...
238s Selecting previously unselected package r-cran-filelock.
238s Preparing to unpack .../201-r-cran-filelock_1.0.3-1_arm64.deb ...
238s Unpacking r-cran-filelock (1.0.3-1) ...
238s Selecting previously unselected package r-bioc-biocfilecache.
238s Preparing to unpack .../202-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ...
238s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ...
238s Selecting previously unselected package r-cran-base64enc.
238s Preparing to unpack .../203-r-cran-base64enc_0.1-3-3_arm64.deb ...
238s Unpacking r-cran-base64enc (0.1-3-3) ...
238s Selecting previously unselected package r-cran-digest.
238s Preparing to unpack .../204-r-cran-digest_0.6.34-1_arm64.deb ...
238s Unpacking r-cran-digest (0.6.34-1) ...
238s Selecting previously unselected package r-cran-ellipsis.
239s Preparing to unpack .../205-r-cran-ellipsis_0.3.2-2_arm64.deb ...
239s Unpacking r-cran-ellipsis (0.3.2-2) ...
239s Selecting previously unselected package r-cran-htmltools.
239s Preparing to unpack .../206-r-cran-htmltools_0.5.7-1_arm64.deb ...
239s Unpacking r-cran-htmltools (0.5.7-1) ...
239s Selecting previously unselected package r-cran-evaluate.
239s Preparing to unpack .../207-r-cran-evaluate_0.23-1_all.deb ...
239s Unpacking r-cran-evaluate (0.23-1) ...
239s Selecting previously unselected package r-cran-xfun.
239s Preparing to unpack .../208-r-cran-xfun_0.41+dfsg-1_arm64.deb ...
239s Unpacking r-cran-xfun (0.41+dfsg-1) ...
239s Selecting previously unselected package r-cran-highr.
239s Preparing to unpack .../209-r-cran-highr_0.10+dfsg-1_all.deb ...
239s Unpacking r-cran-highr (0.10+dfsg-1) ...
239s Selecting previously unselected package r-cran-yaml.
239s Preparing to unpack .../210-r-cran-yaml_2.3.8-1_arm64.deb ...
239s Unpacking r-cran-yaml (2.3.8-1) ...
239s Selecting previously unselected package libjs-mathjax.
239s Preparing to unpack .../211-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
239s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
240s Selecting previously unselected package r-cran-knitr.
240s Preparing to unpack .../212-r-cran-knitr_1.45+dfsg-1_all.deb ...
240s Unpacking r-cran-knitr (1.45+dfsg-1) ...
240s Selecting previously unselected package r-cran-jquerylib.
240s Preparing to unpack .../213-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
240s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
240s Selecting previously unselected package r-cran-fs.
241s Preparing to unpack .../214-r-cran-fs_1.6.3+dfsg-1_arm64.deb ...
241s Unpacking r-cran-fs (1.6.3+dfsg-1) ...
241s Selecting previously unselected package r-cran-rappdirs.
241s Preparing to unpack .../215-r-cran-rappdirs_0.3.3-1_arm64.deb ...
241s Unpacking r-cran-rappdirs (0.3.3-1) ...
241s Selecting previously unselected package r-cran-sass.
241s Preparing to unpack .../216-r-cran-sass_0.4.8+dfsg-1_arm64.deb ...
241s Unpacking r-cran-sass (0.4.8+dfsg-1) ...
241s Selecting previously unselected package r-cran-bslib.
241s Preparing to unpack .../217-r-cran-bslib_0.6.1+dfsg-1_all.deb ...
241s Unpacking r-cran-bslib (0.6.1+dfsg-1) ...
241s Selecting previously unselected package r-cran-fontawesome.
241s Preparing to unpack .../218-r-cran-fontawesome_0.5.2-1_all.deb ...
241s Unpacking r-cran-fontawesome (0.5.2-1) ...
242s Selecting previously unselected package r-cran-tinytex.
242s Preparing to unpack .../219-r-cran-tinytex_0.49-1_all.deb ...
242s Unpacking r-cran-tinytex (0.49-1) ...
242s Selecting previously unselected package libjs-modernizr.
242s Preparing to unpack .../220-libjs-modernizr_2.6.2+ds1-5_all.deb ...
242s Unpacking libjs-modernizr (2.6.2+ds1-5) ...
242s Selecting previously unselected package r-cran-pkgkitten.
242s Preparing to unpack .../221-r-cran-pkgkitten_0.2.3-1_all.deb ...
242s Unpacking r-cran-pkgkitten (0.2.3-1) ...
242s Selecting previously unselected package r-cran-rcpp.
242s Preparing to unpack .../222-r-cran-rcpp_1.0.12-1_arm64.deb ...
242s Unpacking r-cran-rcpp (1.0.12-1) ...
242s Selecting previously unselected package r-cran-later.
243s Preparing to unpack .../223-r-cran-later_1.3.2+dfsg-1_arm64.deb ...
243s Unpacking r-cran-later (1.3.2+dfsg-1) ...
243s Selecting previously unselected package r-cran-promises.
243s Preparing to unpack .../224-r-cran-promises_1.2.1+dfsg-1_arm64.deb ...
243s Unpacking r-cran-promises (1.2.1+dfsg-1) ...
243s Selecting previously unselected package r-cran-httpuv.
243s Preparing to unpack .../225-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ...
243s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ...
243s Selecting previously unselected package r-cran-xtable.
243s Preparing to unpack .../226-r-cran-xtable_1%3a1.8-4-2_all.deb ...
243s Unpacking r-cran-xtable (1:1.8-4-2) ...
243s Selecting previously unselected package r-cran-sourcetools.
244s Preparing to unpack .../227-r-cran-sourcetools_0.1.7-1-1_arm64.deb ...
244s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
244s Selecting previously unselected package r-cran-commonmark.
244s Preparing to unpack .../228-r-cran-commonmark_1.9.1-1_arm64.deb ...
244s Unpacking r-cran-commonmark (1.9.1-1) ...
244s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
244s Preparing to unpack .../229-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
244s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
244s Selecting previously unselected package r-cran-shiny.
244s Preparing to unpack .../230-r-cran-shiny_1.8.0+dfsg-1_all.deb ...
244s Unpacking r-cran-shiny (1.8.0+dfsg-1) ...
244s Selecting previously unselected package r-cran-rmarkdown.
244s Preparing to unpack .../231-r-cran-rmarkdown_2.25+dfsg-3_all.deb ...
244s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ...
244s Selecting previously unselected package r-cran-bookdown.
244s Preparing to unpack .../232-r-cran-bookdown_0.37+dfsg-1_all.deb ...
244s Unpacking r-cran-bookdown (0.37+dfsg-1) ...
245s Selecting previously unselected package r-cran-biocmanager.
245s Preparing to unpack .../233-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ...
245s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ...
245s Selecting previously unselected package tex-common.
245s Preparing to unpack .../234-tex-common_6.18_all.deb ...
245s Unpacking tex-common (6.18) ...
245s Selecting previously unselected package t1utils.
245s Preparing to unpack .../235-t1utils_1.41-4build2_arm64.deb ...
245s Unpacking t1utils (1.41-4build2) ...
246s Selecting previously unselected package texlive-binaries.
246s Preparing to unpack .../236-texlive-binaries_2023.20230311.66589-9_arm64.deb ...
246s Unpacking texlive-binaries (2023.20230311.66589-9) ...
246s Selecting previously unselected package texlive-base.
246s Preparing to unpack .../237-texlive-base_2023.20240207-1_all.deb ...
246s Unpacking texlive-base (2023.20240207-1) ...
247s Selecting previously unselected package texlive-latex-base.
248s Preparing to unpack .../238-texlive-latex-base_2023.20240207-1_all.deb ...
248s Unpacking texlive-latex-base (2023.20240207-1) ...
248s Selecting previously unselected package texlive-bibtex-extra.
248s Preparing to unpack .../239-texlive-bibtex-extra_2023.20240207-1_all.deb ...
248s Unpacking texlive-bibtex-extra (2023.20240207-1) ...
251s Selecting previously unselected package r-bioc-biocstyle.
251s Preparing to unpack .../240-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ...
251s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ...
251s Selecting previously unselected package r-cran-xml.
251s Preparing to unpack .../241-r-cran-xml_3.99-0.16.1-1_arm64.deb ...
251s Unpacking r-cran-xml (3.99-0.16.1-1) ...
251s Selecting previously unselected package r-cran-hms.
251s Preparing to unpack .../242-r-cran-hms_1.1.3-1_all.deb ...
251s Unpacking r-cran-hms (1.1.3-1) ...
251s Selecting previously unselected package r-cran-prettyunits.
251s Preparing to unpack .../243-r-cran-prettyunits_1.2.0-1_all.deb ...
251s Unpacking r-cran-prettyunits (1.2.0-1) ...
251s Selecting previously unselected package r-cran-progress.
251s Preparing to unpack .../244-r-cran-progress_1.2.3-1_all.deb ...
251s Unpacking r-cran-progress (1.2.3-1) ...
251s Selecting previously unselected package r-cran-xml2.
251s Preparing to unpack .../245-r-cran-xml2_1.3.6-1_arm64.deb ...
251s Unpacking r-cran-xml2 (1.3.6-1) ...
251s Selecting previously unselected package r-bioc-biomart.
251s Preparing to unpack .../246-r-bioc-biomart_2.58.2+dfsg-1_all.deb ...
251s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ...
251s Selecting previously unselected package r-cran-brio.
251s Preparing to unpack .../247-r-cran-brio_1.1.4-1_arm64.deb ...
251s Unpacking r-cran-brio (1.1.4-1) ...
251s Selecting previously unselected package r-cran-ps.
251s Preparing to unpack .../248-r-cran-ps_1.7.6-1_arm64.deb ...
251s Unpacking r-cran-ps (1.7.6-1) ...
251s Selecting previously unselected package r-cran-processx.
252s Preparing to unpack .../249-r-cran-processx_3.8.3-1_arm64.deb ...
252s Unpacking r-cran-processx (3.8.3-1) ...
252s Selecting previously unselected package r-cran-callr.
252s Preparing to unpack .../250-r-cran-callr_3.7.3-2_all.deb ...
252s Unpacking r-cran-callr (3.7.3-2) ...
252s Selecting previously unselected package r-cran-triebeard.
252s Preparing to unpack .../251-r-cran-triebeard_0.4.1-1_arm64.deb ...
252s Unpacking r-cran-triebeard (0.4.1-1) ...
252s Selecting previously unselected package r-cran-urltools.
252s Preparing to unpack .../252-r-cran-urltools_1.7.3+dfsg-2_arm64.deb ...
252s Unpacking r-cran-urltools (1.7.3+dfsg-2) ...
252s Selecting previously unselected package r-cran-httpcode.
252s Preparing to unpack .../253-r-cran-httpcode_0.3.0-2build1_all.deb ...
252s Unpacking r-cran-httpcode (0.3.0-2build1) ...
252s Selecting previously unselected package r-cran-crul.
252s Preparing to unpack .../254-r-cran-crul_1.4.0+dfsg-1_all.deb ...
252s Unpacking r-cran-crul (1.4.0+dfsg-1) ...
252s Selecting previously unselected package r-cran-desc.
252s Preparing to unpack .../255-r-cran-desc_1.4.3-1_all.deb ...
252s Unpacking r-cran-desc (1.4.3-1) ...
252s Selecting previously unselected package r-cran-diffobj.
252s Preparing to unpack .../256-r-cran-diffobj_0.3.5-1_arm64.deb ...
252s Unpacking r-cran-diffobj (0.3.5-1) ...
252s Selecting previously unselected package r-cran-whisker.
252s Preparing to unpack .../257-r-cran-whisker_0.4.1-1_all.deb ...
252s Unpacking r-cran-whisker (0.4.1-1) ...
252s Selecting previously unselected package r-cran-fauxpas.
252s Preparing to unpack .../258-r-cran-fauxpas_0.5.2+dfsg-1_all.deb ...
252s Unpacking r-cran-fauxpas (0.5.2+dfsg-1) ...
252s Selecting previously unselected package r-cran-pkgbuild.
252s Preparing to unpack .../259-r-cran-pkgbuild_1.4.3-1_all.deb ...
253s Unpacking r-cran-pkgbuild (1.4.3-1) ...
253s Selecting previously unselected package r-cran-rprojroot.
253s Preparing to unpack .../260-r-cran-rprojroot_2.0.4-1_all.deb ...
253s Unpacking r-cran-rprojroot (2.0.4-1) ...
253s Selecting previously unselected package r-cran-pkgload.
253s Preparing to unpack .../261-r-cran-pkgload_1.3.4-1_all.deb ...
253s Unpacking r-cran-pkgload (1.3.4-1) ...
253s Selecting previously unselected package r-cran-praise.
253s Preparing to unpack .../262-r-cran-praise_1.0.0-4build1_all.deb ...
253s Unpacking r-cran-praise (1.0.0-4build1) ...
253s Selecting previously unselected package r-cran-rematch2.
253s Preparing to unpack .../263-r-cran-rematch2_2.1.2-2build1_all.deb ...
253s Unpacking r-cran-rematch2 (2.1.2-2build1) ...
253s Selecting previously unselected package r-cran-waldo.
253s Preparing to unpack .../264-r-cran-waldo_0.5.2-1build1_all.deb ...
253s Unpacking r-cran-waldo (0.5.2-1build1) ...
253s Selecting previously unselected package r-cran-testthat.
253s Preparing to unpack .../265-r-cran-testthat_3.2.1-1_arm64.deb ...
253s Unpacking r-cran-testthat (3.2.1-1) ...
253s Selecting previously unselected package r-cran-mockery.
253s Preparing to unpack .../266-r-cran-mockery_0.4.4+dfsg-1_all.deb ...
253s Unpacking r-cran-mockery (0.4.4+dfsg-1) ...
253s Selecting previously unselected package r-cran-webmockr.
253s Preparing to unpack .../267-r-cran-webmockr_0.9.0-1_all.deb ...
253s Unpacking r-cran-webmockr (0.9.0-1) ...
253s Selecting previously unselected package autopkgtest-satdep.
253s Preparing to unpack .../268-1-autopkgtest-satdep.deb ...
253s Unpacking autopkgtest-satdep (0) ...
253s Setting up libjs-json (0~20221030+~1.0.8-1) ...
253s Setting up javascript-common (11+nmu1) ...
253s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
253s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
253s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
253s Setting up libpaper1:arm64 (1.1.29) ...
254s 
254s Creating config file /etc/papersize with new version
254s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
254s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
254s Setting up libxpm4:arm64 (1:3.5.17-1) ...
254s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
254s Setting up libxi6:arm64 (2:1.8.1-1) ...
254s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
254s Setting up libdatrie1:arm64 (0.2.13-3) ...
254s Setting up libjs-popper.js (1.16.1+ds-6) ...
254s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
254s Setting up libxcb-render0:arm64 (1.15-1) ...
254s Setting up libjs-sifter.js (0.6.0+dfsg-3) ...
254s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
254s Setting up libjs-lunr (2.3.9~dfsg-2) ...
254s Setting up unzip (6.0-28ubuntu3) ...
254s Setting up liblatex-tounicode-perl (0.54-2) ...
254s Setting up x11-common (1:7.7+23ubuntu2) ...
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255s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
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255s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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255s Setting up pkg-config:arm64 (1.8.1-2) ...
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255s Setting up fontconfig (2.15.0-1ubuntu1) ...
257s Regenerating fonts cache... done.
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257s Setting up libxft2:arm64 (2.3.6-1) ...
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257s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ...
258s Setting up cpp-13 (13.2.0-17ubuntu2) ...
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258s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
258s Setting up cpp (4:13.2.0-7ubuntu1) ...
258s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
258s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
258s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
258s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
258s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
258s Setting up g++-13 (13.2.0-17ubuntu2) ...
258s Setting up libxmu6:arm64 (2:1.1.3-3) ...
258s Setting up libpng-dev:arm64 (1.6.43-3) ...
258s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
258s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
258s Setting up libxaw7:arm64 (2:1.0.14-1) ...
258s Setting up gcc (4:13.2.0-7ubuntu1) ...
258s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
258s Setting up r-base-core (4.3.3-2build1) ...
258s 
258s Creating config file /etc/R/Renviron with new version
258s Setting up r-cran-crayon (1.5.2-1) ...
258s Setting up r-cran-sourcetools (0.1.7-1-1) ...
258s Setting up r-cran-ps (1.7.6-1) ...
258s Setting up r-cran-xml (3.99-0.16.1-1) ...
258s Setting up r-cran-whisker (0.4.1-1) ...
258s Setting up texlive-binaries (2023.20230311.66589-9) ...
258s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
258s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
258s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
258s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
258s Setting up r-cran-commonmark (1.9.1-1) ...
258s Setting up r-cran-r6 (2.5.1-1) ...
258s Setting up r-cran-pkgkitten (0.2.3-1) ...
258s Setting up texlive-base (2023.20240207-1) ...
259s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
259s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
260s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
260s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
261s Setting up r-cran-magrittr (2.0.3-1) ...
261s Setting up r-cran-rappdirs (0.3.3-1) ...
261s Setting up r-cran-filelock (1.0.3-1) ...
261s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
261s Setting up r-cran-littler (0.3.19-1) ...
261s Setting up r-cran-fs (1.6.3+dfsg-1) ...
261s Setting up r-cran-rcpp (1.0.12-1) ...
261s Setting up r-cran-curl (5.2.0+dfsg-1) ...
261s Setting up r-cran-brio (1.1.4-1) ...
261s Setting up r-cran-diffobj (0.3.5-1) ...
261s Setting up r-bioc-biocgenerics (0.48.1-2) ...
261s Setting up r-cran-rlang (1.1.3-1) ...
261s Setting up littler (0.3.19-1) ...
261s Setting up r-cran-xfun (0.41+dfsg-1) ...
261s Setting up r-cran-sys (3.4.2-1) ...
261s Setting up r-cran-plogr (0.2.0-3build1) ...
261s Setting up r-cran-withr (2.5.0-1) ...
261s Setting up r-cran-processx (3.8.3-1) ...
261s Setting up r-cran-mime (0.12-1) ...
261s Setting up r-cran-praise (1.0.0-4build1) ...
261s Setting up r-cran-generics (0.1.3-1) ...
261s Setting up r-cran-base64enc (0.1-3-3) ...
261s Setting up r-cran-digest (0.6.34-1) ...
261s Setting up r-cran-yaml (2.3.8-1) ...
261s Setting up r-cran-evaluate (0.23-1) ...
261s Setting up r-cran-triebeard (0.4.1-1) ...
261s Setting up r-cran-dbi (1.2.2-1) ...
261s Setting up r-cran-highr (0.10+dfsg-1) ...
261s Setting up r-cran-prettyunits (1.2.0-1) ...
261s Setting up r-cran-fansi (1.0.5-1) ...
261s Setting up r-cran-glue (1.7.0-1) ...
261s Setting up r-cran-bit (4.0.5-1) ...
261s Setting up r-cran-xtable (1:1.8-4-2) ...
261s Setting up r-cran-cli (3.6.2-1) ...
261s Setting up gfortran (4:13.2.0-7ubuntu1) ...
261s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
261s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
261s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
261s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
261s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
261s Setting up r-cran-bitops (1.0-7-1) ...
261s Setting up r-cran-httpcode (0.3.0-2build1) ...
261s Setting up r-cran-rprojroot (2.0.4-1) ...
261s Setting up r-cran-bit64 (4.0.5-1) ...
261s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
261s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
261s Setting up r-cran-askpass (1.2.0-1) ...
261s Setting up r-cran-fastmap (1.1.1-1) ...
261s Setting up r-cran-png (0.1-8-1) ...
261s Setting up r-bioc-biobase (2.62.0-1) ...
261s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
261s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
261s Setting up r-cran-utf8 (1.2.4-1) ...
261s Setting up r-cran-stringi (1.8.3-1) ...
261s Setting up texlive-latex-base (2023.20240207-1) ...
261s Setting up r-cran-cpp11 (0.4.7-1) ...
261s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
261s Setting up r-cran-later (1.3.2+dfsg-1) ...
261s Setting up r-cran-tinytex (0.49-1) ...
261s Setting up r-cran-urltools (1.7.3+dfsg-2) ...
261s Setting up r-cran-knitr (1.45+dfsg-1) ...
261s Setting up g++ (4:13.2.0-7ubuntu1) ...
261s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
261s Setting up r-cran-cachem (1.0.8-1) ...
261s Setting up build-essential (12.10ubuntu1) ...
261s Setting up r-bioc-iranges (2.36.0-1) ...
261s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
261s Setting up r-cran-vctrs (0.6.5-1) ...
261s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
261s Setting up r-cran-ellipsis (0.3.2-2) ...
261s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
261s Setting up r-cran-fauxpas (0.5.2+dfsg-1) ...
261s Setting up r-base-dev (4.3.3-2build1) ...
261s Setting up r-cran-stringr (1.5.1-1) ...
261s Setting up r-cran-callr (3.7.3-2) ...
261s Setting up r-cran-desc (1.4.3-1) ...
261s Setting up r-cran-xml2 (1.3.6-1) ...
261s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
261s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
261s Setting up texlive-bibtex-extra (2023.20240207-1) ...
261s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
261s Setting up r-cran-httr (1.4.7+dfsg-1) ...
261s Setting up r-cran-hms (1.1.3-1) ...
261s Setting up r-cran-memoise (2.0.1-1) ...
261s Setting up r-cran-promises (1.2.1+dfsg-1) ...
261s Setting up r-cran-purrr (1.0.2-1) ...
261s Setting up r-cran-crul (1.4.0+dfsg-1) ...
261s Setting up r-cran-blob (1.2.4-1) ...
261s Setting up r-cran-htmltools (0.5.7-1) ...
261s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
261s Setting up r-bioc-xvector (0.42.0-1) ...
261s Setting up r-cran-pkgbuild (1.4.3-1) ...
261s Setting up r-cran-sass (0.4.8+dfsg-1) ...
261s Setting up r-cran-dplyr (1.1.4-1) ...
261s Setting up r-cran-rsqlite (2.3.4-1) ...
261s Setting up r-cran-webmockr (0.9.0-1) ...
261s Setting up r-cran-progress (1.2.3-1) ...
261s Setting up r-cran-pkgload (1.3.4-1) ...
261s Setting up r-cran-httpuv (1.6.14+dfsg-1) ...
261s Setting up r-cran-rematch2 (2.1.2-2build1) ...
261s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
261s Setting up r-cran-fontawesome (0.5.2-1) ...
261s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
261s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
261s Setting up r-cran-waldo (0.5.2-1build1) ...
261s Setting up r-cran-tidyr (1.3.1-1) ...
261s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ...
261s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ...
261s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
261s Setting up r-bioc-annotationdbi (1.64.1-1) ...
261s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
261s Setting up r-cran-testthat (3.2.1-1) ...
261s Setting up r-cran-mockery (0.4.4+dfsg-1) ...
261s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
261s Setting up r-bioc-biomart (2.58.2+dfsg-1) ...
261s Setting up r-cran-bookdown (0.37+dfsg-1) ...
261s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ...
261s Setting up autopkgtest-satdep (0) ...
261s Processing triggers for man-db (2.12.0-3) ...
261s Processing triggers for install-info (7.1-3) ...
261s Processing triggers for libc-bin (2.39-0ubuntu2) ...
261s Processing triggers for tex-common (6.18) ...
262s Running updmap-sys. This may take some time... done.
262s Running mktexlsr /var/lib/texmf ... done.
262s Building format(s) --all.
298s 	This may take some time... done.
313s (Reading database ... 107184 files and directories currently installed.)
313s Removing autopkgtest-satdep (0) ...
313s autopkgtest [17:28:38]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
313s autopkgtest [17:28:38]: test pkg-r-autopkgtest: [-----------------------
314s Test: Try to load the R library biomaRt
314s 
314s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
314s Copyright (C) 2024 The R Foundation for Statistical Computing
314s Platform: aarch64-unknown-linux-gnu (64-bit)
314s 
314s R is free software and comes with ABSOLUTELY NO WARRANTY.
314s You are welcome to redistribute it under certain conditions.
314s Type 'license()' or 'licence()' for distribution details.
314s 
314s R is a collaborative project with many contributors.
314s Type 'contributors()' for more information and
314s 'citation()' on how to cite R or R packages in publications.
314s 
314s Type 'demo()' for some demos, 'help()' for on-line help, or
314s 'help.start()' for an HTML browser interface to help.
314s Type 'q()' to quit R.
314s 
314s > library('biomaRt')
319s > 
319s > 
319s Other tests are currently unsupported!
319s They will be progressively added.
319s autopkgtest [17:28:44]: test pkg-r-autopkgtest: -----------------------]
320s pkg-r-autopkgtest    PASS
320s autopkgtest [17:28:45]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
320s autopkgtest [17:28:45]: @@@@@@@@@@@@@@@@@@@@ summary
320s pkg-r-autopkgtest    PASS
333s Creating nova instance adt-noble-arm64-r-bioc-biomart-20240316-172325-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...