0s autopkgtest [17:23:13]: starting date and time: 2024-03-16 17:23:13+0000 0s autopkgtest [17:23:13]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:23:13]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4d6iezvx/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-biocviews --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-13.secgroup --name adt-noble-arm64-r-bioc-biocviews-20240316-172313-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 62s autopkgtest [17:24:15]: testbed dpkg architecture: arm64 62s autopkgtest [17:24:15]: testbed apt version: 2.7.12 62s autopkgtest [17:24:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 62s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 63s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 63s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 63s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 63s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 63s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 63s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 63s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 63s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 63s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 63s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 63s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 63s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 65s Fetched 9060 kB in 2s (4563 kB/s) 65s Reading package lists... 68s Reading package lists... 68s Building dependency tree... 68s Reading state information... 69s Calculating upgrade... 69s The following packages will be REMOVED: 69s libglib2.0-0 libssl3 69s The following NEW packages will be installed: 69s libglib2.0-0t64 libssl3t64 xdg-user-dirs 69s The following packages have been kept back: 69s curl 69s The following packages will be upgraded: 69s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 69s ubuntu-minimal ubuntu-standard 69s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 69s Need to get 4613 kB of archives. 69s After this operation, 211 kB of additional disk space will be used. 69s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 69s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 70s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 70s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 70s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 70s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 70s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 70s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 70s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 70s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 70s Fetched 4613 kB in 1s (6260 kB/s) 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 70s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 70s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 70s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 70s udisks2 depends on libglib2.0-0 (>= 2.77.0). 70s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 70s python3-gi depends on libglib2.0-0 (>= 2.77.0). 70s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 70s netplan.io depends on libglib2.0-0 (>= 2.70.0). 70s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 70s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 70s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 70s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 70s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 70s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 70s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 70s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 70s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 70s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 70s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 70s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 70s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 70s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 70s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 70s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 70s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 70s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 70s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 70s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 70s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 70s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 70s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 70s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 70s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 70s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 70s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 70s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 70s fwupd depends on libglib2.0-0 (>= 2.79.0). 70s bolt depends on libglib2.0-0 (>= 2.56.0). 70s 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 70s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 70s Selecting previously unselected package libglib2.0-0t64:arm64. 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 70s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 70s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 70s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 70s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 71s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 71s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 71s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 71s wget depends on libssl3 (>= 3.0.0). 71s u-boot-tools depends on libssl3 (>= 3.0.0). 71s tnftp depends on libssl3 (>= 3.0.0). 71s tcpdump depends on libssl3 (>= 3.0.0). 71s systemd-resolved depends on libssl3 (>= 3.0.0). 71s systemd depends on libssl3 (>= 3.0.0). 71s sudo depends on libssl3 (>= 3.0.0). 71s sbsigntool depends on libssl3 (>= 3.0.0). 71s rsync depends on libssl3 (>= 3.0.0). 71s python3-cryptography depends on libssl3 (>= 3.0.0). 71s openssh-server depends on libssl3 (>= 3.0.10). 71s openssh-client depends on libssl3 (>= 3.0.10). 71s mtd-utils depends on libssl3 (>= 3.0.0). 71s mokutil depends on libssl3 (>= 3.0.0). 71s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 71s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 71s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 71s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 71s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 71s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 71s libnvme1 depends on libssl3 (>= 3.0.0). 71s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 71s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 71s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 71s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 71s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 71s kmod depends on libssl3 (>= 3.0.0). 71s dhcpcd-base depends on libssl3 (>= 3.0.0). 71s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 71s 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 71s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 71s Selecting previously unselected package libssl3t64:arm64. 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 71s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 71s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 71s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 71s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 71s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 71s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 71s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 71s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 71s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 71s Unpacking ubuntu-minimal (1.536) over (1.535) ... 71s Selecting previously unselected package xdg-user-dirs. 71s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 71s Unpacking xdg-user-dirs (0.18-1) ... 71s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 71s Unpacking ubuntu-standard (1.536) over (1.535) ... 71s Setting up ubuntu-minimal (1.536) ... 71s Setting up xdg-user-dirs (0.18-1) ... 71s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 71s Setting up libtirpc-common (1.3.4+ds-1.1) ... 71s Setting up ubuntu-standard (1.536) ... 71s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 71s No schema files found: doing nothing. 71s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 71s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 71s Setting up openssl (3.0.13-0ubuntu1) ... 71s Setting up readline-common (8.2-3.1) ... 71s Processing triggers for man-db (2.12.0-3) ... 72s Processing triggers for install-info (7.1-3) ... 72s Processing triggers for libc-bin (2.39-0ubuntu2) ... 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 73s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 73s sh: Attempting to set up Debian/Ubuntu apt sources automatically 74s sh: Distribution appears to be Ubuntu 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 75s eatmydata is already the newest version (131-1). 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 76s dbus is already the newest version (1.14.10-4ubuntu1). 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 77s rng-tools-debian is already the newest version (2.4). 77s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 77s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s The following packages will be REMOVED: 78s cloud-init* python3-configobj* python3-debconf* 79s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 79s After this operation, 3252 kB disk space will be freed. 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 79s Removing cloud-init (24.1.1-0ubuntu1) ... 80s Removing python3-configobj (5.0.8-3) ... 80s Removing python3-debconf (1.5.86) ... 80s Processing triggers for man-db (2.12.0-3) ... 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 80s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 81s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 81s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 81s invoke-rc.d: policy-rc.d denied execution of try-restart. 81s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s linux-generic is already the newest version (6.8.0-11.11+1). 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 83s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 83s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 83s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 85s Reading package lists... 85s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Calculating upgrade... 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s autopkgtest [17:24:41]: rebooting testbed after setup commands that affected boot 322s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 329s autopkgtest [17:28:42]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 331s autopkgtest [17:28:44]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biocviews 334s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocviews 1.70.0-1 (dsc) [2187 B] 334s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocviews 1.70.0-1 (tar) [518 kB] 334s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocviews 1.70.0-1 (diff) [5836 B] 334s gpgv: Signature made Thu Nov 30 09:24:43 2023 UTC 334s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 334s gpgv: issuer "tille@debian.org" 334s gpgv: Can't check signature: No public key 334s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biocviews_1.70.0-1.dsc: no acceptable signature found 334s autopkgtest [17:28:47]: testing package r-bioc-biocviews version 1.70.0-1 334s autopkgtest [17:28:47]: build not needed 336s autopkgtest [17:28:49]: test pkg-r-autopkgtest: preparing testbed 337s Reading package lists... 337s Building dependency tree... 337s Reading state information... 337s Starting pkgProblemResolver with broken count: 0 337s Starting 2 pkgProblemResolver with broken count: 0 337s Done 338s The following additional packages will be installed: 338s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 338s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 338s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 338s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 338s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 338s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 338s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 338s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 338s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 338s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 338s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 338s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 338s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 338s libjs-highlight.js libjs-jquery libjs-jquery-datatables 338s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 338s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 338s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 338s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 338s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 338s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 338s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 338s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 338s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 338s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 338s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 338s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 338s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 338s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 338s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocviews 338s r-bioc-graph r-bioc-rbgl r-cran-base64enc r-cran-bh r-cran-biocmanager 338s r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 338s r-cran-commonmark r-cran-crayon r-cran-digest r-cran-ellipsis 338s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue 338s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite 338s r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr 338s r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 338s r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rmarkdown 338s r-cran-runit r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi 338s r-cran-stringr r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun 338s r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 338s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 338s x11-common xdg-utils zip zlib1g-dev 338s Suggested packages: 338s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 338s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 338s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 338s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 338s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 338s libboost-context1.83-dev libboost-contract1.83-dev 338s libboost-coroutine1.83-dev libboost-date-time1.83-dev 338s libboost-exception1.83-dev libboost-fiber1.83-dev 338s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 338s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 338s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 338s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 338s libboost-numpy1.83-dev libboost-program-options1.83-dev 338s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 338s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 338s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 338s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 338s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 338s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 338s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 338s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 338s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 338s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 338s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 338s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 338s r-bioc-all r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges 338s r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi 338s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-sparsem r-cran-cluster 338s r-cran-rstudioapi r-cran-markdown r-cran-testthat r-cran-getopt r-cran-covr 338s r-cran-httr r-cran-roxygen2 r-cran-inline r-cran-callr r-cran-plm r-cran-zoo 338s r-cran-survival debhelper ghostscript gv | postscript-viewer perl-tk xpdf 338s | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc 338s wp2latex 338s Recommended packages: 338s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 338s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-testthat 338s r-cran-curl r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi 338s r-cran-miniui r-cran-rsconnect r-cran-tibble r-cran-testit r-cran-tufte 338s r-cran-xml2 r-cran-webshot r-cran-ggplot2 r-cran-thematic r-cran-callr 338s r-cran-covr r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot 338s r-cran-whoami r-cran-lattice r-cran-dplyr r-cran-rsvg r-cran-pillar 338s r-cran-spelling r-cran-dbi r-cran-rsqlite r-cran-waldo r-cran-cairo 338s r-cran-markdown r-cran-ragg r-cran-httr r-cran-r.rsp r-cran-sf 338s r-cran-codetools r-cran-formatr r-cran-gridsvg r-cran-jpeg r-cran-magick 338s r-cran-png r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 338s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-future r-cran-purrr 338s r-cran-usethis r-cran-dygraphs r-cran-bit64 r-cran-generics r-cran-pkgdown 338s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 338s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 338s The following NEW packages will be installed: 338s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 338s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 338s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 338s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 338s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 338s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 338s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 338s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 338s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 338s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 338s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 338s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 338s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 338s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 338s libjs-highlight.js libjs-jquery libjs-jquery-datatables 338s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 338s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 338s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 338s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 338s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 338s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 338s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 338s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 338s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 338s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 338s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 338s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 338s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 338s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 338s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocviews 338s r-bioc-graph r-bioc-rbgl r-cran-base64enc r-cran-bh r-cran-biocmanager 338s r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 338s r-cran-commonmark r-cran-crayon r-cran-digest r-cran-ellipsis 338s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue 338s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite 338s r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr 338s r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 338s r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rmarkdown 338s r-cran-runit r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi 338s r-cran-stringr r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun 338s r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 338s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 338s x11-common xdg-utils zip zlib1g-dev 338s 0 upgraded, 214 newly installed, 0 to remove and 0 not upgraded. 338s Need to get 335 MB/335 MB of archives. 338s After this operation, 1212 MB of additional disk space will be used. 338s Get:1 /tmp/autopkgtest.7HKzHo/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B] 338s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 338s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 339s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 339s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 339s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 339s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 339s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 339s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 339s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 339s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 339s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 339s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 339s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 339s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 339s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 339s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 339s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 339s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 339s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 339s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 339s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 339s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 339s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 339s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 340s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 340s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 340s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 340s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 340s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 340s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 340s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 340s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 340s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 340s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 340s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 340s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 340s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 340s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 340s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 340s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 340s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 340s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 340s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 340s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 340s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 340s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 340s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 340s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 340s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 340s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 340s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 340s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 340s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 340s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 340s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 341s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 341s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 341s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 341s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 341s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 341s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 341s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 341s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 341s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 341s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 341s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 341s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 341s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 341s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 341s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 341s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 341s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 341s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 341s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 341s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 341s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 341s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 341s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 341s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 341s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 341s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 341s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 341s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 341s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 341s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 341s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 341s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 341s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 341s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 341s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 341s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 341s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 341s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 342s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 342s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 342s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 342s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 342s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 342s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 342s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 342s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 342s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 342s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 342s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 342s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 342s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 342s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 342s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 342s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 342s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 342s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 342s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 342s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 342s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 342s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 342s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 342s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 342s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 342s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 342s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 342s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 342s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 342s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 342s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 342s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 342s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 342s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 342s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 342s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 342s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 342s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 342s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 342s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 342s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 342s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 342s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 343s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 343s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 343s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 343s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 343s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 343s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 343s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 344s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 344s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 344s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 344s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 344s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 344s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 344s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 344s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 344s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 344s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 344s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 345s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 345s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 345s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 345s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 345s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 345s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 345s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 345s Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 345s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 345s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 345s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 345s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 345s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 345s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 345s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 345s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 345s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 345s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 345s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 345s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 345s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 345s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 345s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 345s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 345s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 345s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 345s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 345s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 345s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 345s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 345s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 345s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 345s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 345s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 345s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 345s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 345s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 345s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 345s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 345s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 345s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 346s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 346s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 346s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 346s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 346s Get:201 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 346s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 346s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 347s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 347s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 351s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 351s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 351s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 351s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rbgl arm64 1.78.0+dfsg-1 [541 kB] 351s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 351s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 351s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 351s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 351s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocviews all 1.70.0-1 [658 kB] 352s Preconfiguring packages ... 352s Fetched 335 MB in 13s (26.1 MB/s) 352s Selecting previously unselected package libc-dev-bin. 352s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 352s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 352s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 352s Selecting previously unselected package linux-libc-dev:arm64. 352s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 352s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 352s Selecting previously unselected package libcrypt-dev:arm64. 352s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 352s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 352s Selecting previously unselected package libtirpc-dev:arm64. 352s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 352s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 352s Selecting previously unselected package libnsl-dev:arm64. 352s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 352s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 353s Selecting previously unselected package rpcsvc-proto. 353s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 353s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 353s Selecting previously unselected package libc6-dev:arm64. 353s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 353s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 353s Selecting previously unselected package libisl23:arm64. 353s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 353s Unpacking libisl23:arm64 (0.26-3) ... 353s Selecting previously unselected package libmpc3:arm64. 353s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 353s Unpacking libmpc3:arm64 (1.3.1-1) ... 353s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 353s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 353s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 353s Selecting previously unselected package cpp-13. 353s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 353s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 353s Selecting previously unselected package cpp-aarch64-linux-gnu. 353s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 353s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 353s Selecting previously unselected package cpp. 353s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 353s Unpacking cpp (4:13.2.0-7ubuntu1) ... 353s Selecting previously unselected package libcc1-0:arm64. 353s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libgomp1:arm64. 353s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libitm1:arm64. 353s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libatomic1:arm64. 353s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libasan8:arm64. 353s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package liblsan0:arm64. 353s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libtsan2:arm64. 353s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libubsan1:arm64. 353s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libhwasan0:arm64. 353s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package libgcc-13-dev:arm64. 353s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 353s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 354s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 354s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 354s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 354s Selecting previously unselected package gcc-13. 354s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 354s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 354s Selecting previously unselected package gcc-aarch64-linux-gnu. 354s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 354s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 354s Selecting previously unselected package gcc. 354s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 354s Unpacking gcc (4:13.2.0-7ubuntu1) ... 354s Selecting previously unselected package libstdc++-13-dev:arm64. 354s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 354s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 354s Selecting previously unselected package g++-13-aarch64-linux-gnu. 354s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 354s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 354s Selecting previously unselected package g++-13. 354s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 354s Unpacking g++-13 (13.2.0-17ubuntu2) ... 354s Selecting previously unselected package g++-aarch64-linux-gnu. 354s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 354s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 355s Selecting previously unselected package g++. 355s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 355s Unpacking g++ (4:13.2.0-7ubuntu1) ... 355s Selecting previously unselected package build-essential. 355s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 355s Unpacking build-essential (12.10ubuntu1) ... 355s Selecting previously unselected package dctrl-tools. 355s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb 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(14-20240303-1ubuntu1) ... 356s Selecting previously unselected package libgfortran-13-dev:arm64. 356s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 356s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 356s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 356s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 356s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 356s Selecting previously unselected package gfortran-13. 356s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 356s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 356s Selecting previously unselected package gfortran-aarch64-linux-gnu. 356s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 356s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 356s Selecting previously unselected package gfortran. 356s Preparing to unpack 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Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 357s Selecting previously unselected package libblas3:arm64. 357s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 357s Unpacking libblas3:arm64 (3.12.0-3) ... 357s Selecting previously unselected package libblas-dev:arm64. 357s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 357s Unpacking libblas-dev:arm64 (3.12.0-3) ... 357s Selecting previously unselected package libboost1.83-dev:arm64. 357s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 357s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 359s Selecting previously unselected package libboost-dev:arm64. 359s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 359s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 359s Selecting previously unselected package libbz2-dev:arm64. 359s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 359s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 359s 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unselected package libjpeg-dev:arm64. 360s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 360s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 360s Selecting previously unselected package libjs-bootstrap. 360s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 360s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 360s Selecting previously unselected package libjs-popper.js. 360s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 360s Unpacking libjs-popper.js (1.16.1+ds-6) ... 360s Selecting previously unselected package libjs-bootstrap4. 360s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 360s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 360s Selecting previously unselected package libjs-d3. 360s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 360s Unpacking libjs-d3 (3.5.17-4) ... 360s Selecting previously unselected package libjs-es5-shim. 360s Preparing to unpack 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libpcre2-posix3:arm64. 362s Preparing to unpack .../106-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 362s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 362s Selecting previously unselected package libpcre2-dev:arm64. 362s Preparing to unpack .../107-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 362s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 362s Selecting previously unselected package libpkgconf3:arm64. 362s Preparing to unpack .../108-libpkgconf3_1.8.1-2_arm64.deb ... 362s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 362s Selecting previously unselected package zlib1g-dev:arm64. 362s Preparing to unpack .../109-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 362s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 362s Selecting previously unselected package libpng-dev:arm64. 362s Preparing to unpack .../110-libpng-dev_1.6.43-1_arm64.deb ... 362s Unpacking libpng-dev:arm64 (1.6.43-1) ... 362s Selecting previously unselected package libpotrace0:arm64. 362s Preparing to unpack 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Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 362s Selecting previously unselected package libtcl8.6:arm64. 363s Preparing to unpack .../117-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 363s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 363s Selecting previously unselected package libteckit0:arm64. 363s Preparing to unpack .../118-libteckit0_2.5.12+ds1-1_arm64.deb ... 363s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 363s Selecting previously unselected package libtexlua53-5:arm64. 363s Preparing to unpack .../119-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 363s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 363s Selecting previously unselected package libjbig0:arm64. 363s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 363s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 363s Selecting previously unselected package libwebp7:arm64. 363s Preparing to unpack .../121-libwebp7_1.3.2-0.4_arm64.deb ... 363s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 363s Selecting previously unselected package libtiff6:arm64. 363s Preparing to unpack .../122-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 363s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 363s Selecting previously unselected package libxft2:arm64. 363s Preparing to unpack .../123-libxft2_2.3.6-1_arm64.deb ... 363s Unpacking libxft2:arm64 (2.3.6-1) ... 363s Selecting previously unselected package libxss1:arm64. 363s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build2_arm64.deb ... 363s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 363s Selecting previously unselected package libtk8.6:arm64. 363s Preparing to unpack .../125-libtk8.6_8.6.13-2_arm64.deb ... 363s Unpacking libtk8.6:arm64 (8.6.13-2) ... 364s Selecting previously unselected package libxt6:arm64. 364s Preparing to unpack .../126-libxt6_1%3a1.2.1-1.1_arm64.deb ... 364s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 364s Selecting previously unselected package libxmu6:arm64. 364s Preparing to unpack .../127-libxmu6_2%3a1.1.3-3_arm64.deb ... 364s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 364s Selecting previously unselected package libxpm4:arm64. 364s Preparing to unpack .../128-libxpm4_1%3a3.5.17-1_arm64.deb ... 364s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 364s Selecting previously unselected package libxaw7:arm64. 364s Preparing to unpack .../129-libxaw7_2%3a1.0.14-1_arm64.deb ... 364s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 364s Selecting previously unselected package libxi6:arm64. 364s Preparing to unpack .../130-libxi6_2%3a1.8.1-1_arm64.deb ... 364s Unpacking libxi6:arm64 (2:1.8.1-1) ... 364s Selecting previously unselected package libzzip-0-13:arm64. 364s Preparing to unpack .../131-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 364s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 364s Selecting previously unselected package zip. 364s Preparing to unpack .../132-zip_3.0-13_arm64.deb ... 364s Unpacking zip (3.0-13) ... 364s Selecting previously unselected package unzip. 364s Preparing to unpack .../133-unzip_6.0-28ubuntu3_arm64.deb ... 364s Unpacking unzip (6.0-28ubuntu3) ... 364s Selecting previously unselected package xdg-utils. 364s Preparing to unpack .../134-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 364s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 364s Selecting previously unselected package r-base-core. 364s Preparing to unpack .../135-r-base-core_4.3.2-1build1_arm64.deb ... 364s Unpacking r-base-core (4.3.2-1build1) ... 364s Selecting previously unselected package r-cran-littler. 364s Preparing to unpack .../136-r-cran-littler_0.3.19-1_arm64.deb ... 364s Unpacking r-cran-littler (0.3.19-1) ... 364s Selecting previously unselected package littler. 364s Preparing to unpack .../137-littler_0.3.19-1_all.deb ... 364s Unpacking littler (0.3.19-1) ... 364s Selecting previously unselected package node-bootstrap-sass. 364s Preparing to unpack .../138-node-bootstrap-sass_3.4.3-2_all.deb ... 364s Unpacking node-bootstrap-sass (3.4.3-2) ... 364s Selecting previously unselected package node-html5shiv. 364s Preparing to unpack .../139-node-html5shiv_3.7.3+dfsg-5_all.deb ... 364s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 364s Selecting previously unselected package node-normalize.css. 365s Preparing to unpack .../140-node-normalize.css_8.0.1-5_all.deb ... 365s Unpacking node-normalize.css (8.0.1-5) ... 365s Selecting previously unselected package pandoc-data. 365s Preparing to unpack .../141-pandoc-data_3.1.3-1_all.deb ... 365s Unpacking pandoc-data (3.1.3-1) ... 365s Selecting previously unselected package pandoc. 365s Preparing to unpack .../142-pandoc_3.1.3+ds-2_arm64.deb ... 365s Unpacking pandoc (3.1.3+ds-2) ... 366s Selecting previously unselected package pkgconf-bin. 366s Preparing to unpack .../143-pkgconf-bin_1.8.1-2_arm64.deb ... 366s Unpacking pkgconf-bin (1.8.1-2) ... 366s Selecting previously unselected package pkgconf:arm64. 366s Preparing to unpack .../144-pkgconf_1.8.1-2_arm64.deb ... 366s Unpacking pkgconf:arm64 (1.8.1-2) ... 366s Selecting previously unselected package pkg-config:arm64. 366s Preparing to unpack .../145-pkg-config_1.8.1-2_arm64.deb ... 366s Unpacking pkg-config:arm64 (1.8.1-2) ... 366s Selecting previously unselected package liblzma-dev:arm64. 366s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 366s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 366s Selecting previously unselected package r-base-dev. 366s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ... 366s Unpacking r-base-dev (4.3.2-1build1) ... 366s Selecting previously unselected package pkg-r-autopkgtest. 366s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 366s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 366s Selecting previously unselected package r-bioc-biocgenerics. 366s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 366s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 366s Selecting previously unselected package r-bioc-biobase. 366s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 366s Unpacking r-bioc-biobase (2.62.0-1) ... 366s Selecting previously unselected package r-cran-base64enc. 366s Preparing to unpack .../151-r-cran-base64enc_0.1-3-3_arm64.deb ... 366s Unpacking r-cran-base64enc (0.1-3-3) ... 366s Selecting previously unselected package r-cran-digest. 366s Preparing to unpack .../152-r-cran-digest_0.6.34-1_arm64.deb ... 366s Unpacking r-cran-digest (0.6.34-1) ... 366s Selecting previously unselected package r-cran-rlang. 366s Preparing to unpack .../153-r-cran-rlang_1.1.3-1_arm64.deb ... 366s Unpacking r-cran-rlang (1.1.3-1) ... 366s Selecting previously unselected package r-cran-ellipsis. 366s Preparing to unpack .../154-r-cran-ellipsis_0.3.2-2_arm64.deb ... 366s Unpacking r-cran-ellipsis (0.3.2-2) ... 366s Selecting previously unselected package r-cran-fastmap. 366s Preparing to unpack .../155-r-cran-fastmap_1.1.1-1_arm64.deb ... 366s Unpacking r-cran-fastmap (1.1.1-1) ... 366s Selecting previously unselected package r-cran-htmltools. 366s Preparing to unpack .../156-r-cran-htmltools_0.5.7-1_arm64.deb ... 366s Unpacking r-cran-htmltools (0.5.7-1) ... 366s Selecting previously unselected package r-cran-evaluate. 366s Preparing to unpack .../157-r-cran-evaluate_0.23-1_all.deb ... 366s Unpacking r-cran-evaluate (0.23-1) ... 366s Selecting previously unselected package r-cran-xfun. 366s Preparing to unpack .../158-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 366s Unpacking r-cran-xfun (0.41+dfsg-1) ... 366s Selecting previously unselected package r-cran-highr. 366s Preparing to unpack .../159-r-cran-highr_0.10+dfsg-1_all.deb ... 366s Unpacking r-cran-highr (0.10+dfsg-1) ... 366s Selecting previously unselected package r-cran-yaml. 366s Preparing to unpack .../160-r-cran-yaml_2.3.8-1_arm64.deb ... 366s Unpacking r-cran-yaml (2.3.8-1) ... 366s Selecting previously unselected package libjs-mathjax. 367s Preparing to unpack .../161-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 367s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 367s Selecting previously unselected package r-cran-knitr. 367s Preparing to unpack .../162-r-cran-knitr_1.45+dfsg-1_all.deb ... 367s Unpacking r-cran-knitr (1.45+dfsg-1) ... 367s Selecting previously unselected package r-cran-cachem. 367s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 367s Unpacking r-cran-cachem (1.0.8-1) ... 367s Selecting previously unselected package r-cran-jquerylib. 367s Preparing to unpack .../164-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 367s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 367s Selecting previously unselected package r-cran-jsonlite. 367s Preparing to unpack .../165-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 367s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 368s Selecting previously unselected package r-cran-cli. 368s Preparing to unpack .../166-r-cran-cli_3.6.2-1_arm64.deb ... 368s Unpacking r-cran-cli (3.6.2-1) ... 368s Selecting previously unselected package r-cran-glue. 368s Preparing to unpack .../167-r-cran-glue_1.7.0-1_arm64.deb ... 368s Unpacking r-cran-glue (1.7.0-1) ... 368s Selecting previously unselected package r-cran-lifecycle. 368s Preparing to unpack .../168-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 368s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 368s Selecting previously unselected package r-cran-memoise. 368s Preparing to unpack .../169-r-cran-memoise_2.0.1-1_all.deb ... 368s Unpacking r-cran-memoise (2.0.1-1) ... 368s Selecting previously unselected package r-cran-mime. 368s Preparing to unpack .../170-r-cran-mime_0.12-1_arm64.deb ... 368s Unpacking r-cran-mime (0.12-1) ... 368s Selecting previously unselected package r-cran-fs. 368s Preparing to unpack .../171-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 368s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 368s Selecting previously unselected package r-cran-r6. 368s Preparing to unpack .../172-r-cran-r6_2.5.1-1_all.deb ... 368s Unpacking r-cran-r6 (2.5.1-1) ... 368s Selecting previously unselected package r-cran-rappdirs. 368s Preparing to unpack .../173-r-cran-rappdirs_0.3.3-1_arm64.deb ... 368s Unpacking r-cran-rappdirs (0.3.3-1) ... 368s Selecting previously unselected package r-cran-sass. 368s Preparing to unpack .../174-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 368s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 368s Selecting previously unselected package r-cran-bslib. 368s Preparing to unpack .../175-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 368s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 368s Selecting previously unselected package r-cran-fontawesome. 368s Preparing to unpack .../176-r-cran-fontawesome_0.5.2-1_all.deb ... 368s Unpacking r-cran-fontawesome (0.5.2-1) ... 368s Selecting previously unselected package r-cran-magrittr. 369s Preparing to unpack .../177-r-cran-magrittr_2.0.3-1_arm64.deb ... 369s Unpacking r-cran-magrittr (2.0.3-1) ... 369s Selecting previously unselected package r-cran-stringi. 369s Preparing to unpack .../178-r-cran-stringi_1.8.3-1_arm64.deb ... 369s Unpacking r-cran-stringi (1.8.3-1) ... 369s Selecting previously unselected package r-cran-vctrs. 369s Preparing to unpack .../179-r-cran-vctrs_0.6.5-1_arm64.deb ... 369s Unpacking r-cran-vctrs (0.6.5-1) ... 369s Selecting previously unselected package r-cran-stringr. 369s Preparing to unpack .../180-r-cran-stringr_1.5.1-1_all.deb ... 369s Unpacking r-cran-stringr (1.5.1-1) ... 369s Selecting previously unselected package r-cran-tinytex. 369s Preparing to unpack .../181-r-cran-tinytex_0.49-1_all.deb ... 369s Unpacking r-cran-tinytex (0.49-1) ... 369s Selecting previously unselected package libjs-modernizr. 369s Preparing to unpack .../182-libjs-modernizr_2.6.2+ds1-5_all.deb ... 369s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 369s Selecting previously unselected package r-cran-pkgkitten. 369s Preparing to unpack .../183-r-cran-pkgkitten_0.2.3-1_all.deb ... 369s Unpacking r-cran-pkgkitten (0.2.3-1) ... 369s Selecting previously unselected package r-cran-rcpp. 369s Preparing to unpack .../184-r-cran-rcpp_1.0.12-1_arm64.deb ... 369s Unpacking r-cran-rcpp (1.0.12-1) ... 369s Selecting previously unselected package r-cran-later. 369s Preparing to unpack .../185-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 369s Unpacking r-cran-later (1.3.2+dfsg-1) ... 369s Selecting previously unselected package r-cran-promises. 369s Preparing to unpack .../186-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 369s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 369s Selecting previously unselected package r-cran-httpuv. 369s Preparing to unpack .../187-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 369s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 369s Selecting previously unselected package r-cran-xtable. 369s Preparing to unpack .../188-r-cran-xtable_1%3a1.8-4-2_all.deb ... 369s Unpacking r-cran-xtable (1:1.8-4-2) ... 369s Selecting previously unselected package r-cran-sourcetools. 369s Preparing to unpack .../189-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 369s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 369s Selecting previously unselected package r-cran-crayon. 369s Preparing to unpack .../190-r-cran-crayon_1.5.2-1_all.deb ... 369s Unpacking r-cran-crayon (1.5.2-1) ... 369s Selecting previously unselected package r-cran-withr. 370s Preparing to unpack .../191-r-cran-withr_2.5.0-1_all.deb ... 370s Unpacking r-cran-withr (2.5.0-1) ... 370s Selecting previously unselected package r-cran-commonmark. 370s Preparing to unpack .../192-r-cran-commonmark_1.9.1-1_arm64.deb ... 370s Unpacking r-cran-commonmark (1.9.1-1) ... 370s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 370s Preparing to unpack .../193-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 370s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 370s Selecting previously unselected package r-cran-shiny. 370s Preparing to unpack .../194-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 370s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 370s Selecting previously unselected package r-cran-rmarkdown. 370s Preparing to unpack .../195-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 370s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 370s Selecting previously unselected package r-cran-bookdown. 370s Preparing to unpack .../196-r-cran-bookdown_0.37+dfsg-1_all.deb ... 370s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 370s Selecting previously unselected package r-cran-biocmanager. 370s Preparing to unpack .../197-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 370s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 370s Selecting previously unselected package tex-common. 370s Preparing to unpack .../198-tex-common_6.18_all.deb ... 370s Unpacking tex-common (6.18) ... 370s Selecting previously unselected package t1utils. 370s Preparing to unpack .../199-t1utils_1.41-4build2_arm64.deb ... 370s Unpacking t1utils (1.41-4build2) ... 370s Selecting previously unselected package texlive-binaries. 370s Preparing to unpack .../200-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 370s Unpacking texlive-binaries (2023.20230311.66589-9) ... 370s Selecting previously unselected package texlive-base. 370s Preparing to unpack .../201-texlive-base_2023.20240207-1_all.deb ... 370s Unpacking texlive-base (2023.20240207-1) ... 372s Selecting previously unselected package texlive-latex-base. 372s Preparing to unpack .../202-texlive-latex-base_2023.20240207-1_all.deb ... 372s Unpacking texlive-latex-base (2023.20240207-1) ... 372s Selecting previously unselected package texlive-bibtex-extra. 374s Preparing to unpack .../203-texlive-bibtex-extra_2023.20240207-1_all.deb ... 374s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 377s Selecting previously unselected package r-bioc-biocstyle. 377s Preparing to unpack .../204-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 377s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 377s Selecting previously unselected package r-bioc-graph. 377s Preparing to unpack .../205-r-bioc-graph_1.80.0-1_arm64.deb ... 377s Unpacking r-bioc-graph (1.80.0-1) ... 377s Selecting previously unselected package r-cran-bh. 377s Preparing to unpack .../206-r-cran-bh_1.84.0-1_all.deb ... 377s Unpacking r-cran-bh (1.84.0-1) ... 377s Selecting previously unselected package r-bioc-rbgl. 377s Preparing to unpack .../207-r-bioc-rbgl_1.78.0+dfsg-1_arm64.deb ... 377s Unpacking r-bioc-rbgl (1.78.0+dfsg-1) ... 378s Selecting previously unselected package r-cran-xml. 378s Preparing to unpack .../208-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 378s Unpacking r-cran-xml (3.99-0.16.1-1) ... 378s Selecting previously unselected package r-cran-bitops. 378s Preparing to unpack .../209-r-cran-bitops_1.0-7-1_arm64.deb ... 378s Unpacking r-cran-bitops (1.0-7-1) ... 378s Selecting previously unselected package r-cran-rcurl. 378s Preparing to unpack .../210-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 378s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 378s Selecting previously unselected package r-cran-runit. 378s Preparing to unpack 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379s Setting up libxi6:arm64 (2:1.8.1-1) ... 379s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 379s Setting up libdatrie1:arm64 (0.2.13-3) ... 379s Setting up libjs-popper.js (1.16.1+ds-6) ... 379s Setting up libxcb-render0:arm64 (1.15-1) ... 379s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 379s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 379s Setting up libjs-lunr (2.3.9~dfsg-2) ... 379s Setting up unzip (6.0-28ubuntu3) ... 379s Setting up liblatex-tounicode-perl (0.54-2) ... 379s Setting up x11-common (1:7.7+23ubuntu2) ... 379s Setting up node-html5shiv (3.7.3+dfsg-5) ... 379s Setting up libdeflate0:arm64 (1.19-1) ... 379s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 379s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 379s Setting up libxcb-shm0:arm64 (1.15-1) ... 379s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 379s Setting up libpaper-utils (1.1.29) ... 379s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 379s Setting up libjs-modernizr (2.6.2+ds1-5) ... 379s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 379s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 379s Setting up libjs-es5-shim (4.6.7-2) ... 379s Setting up tex-common (6.18) ... 379s update-language: texlive-base not installed and configured, doing nothing! 380s Setting up libio-string-perl (1.08-4) ... 380s Setting up zip (3.0-13) ... 380s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 380s Setting up libblas3:arm64 (3.12.0-3) ... 380s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 380s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 380s Setting up libpkgconf3:arm64 (1.8.1-2) ... 380s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 380s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 380s Setting up t1utils (1.41-4build2) ... 380s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 380s Setting up 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(14-20240303-1ubuntu1) ... 380s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 380s Setting up libblas-dev:arm64 (3.12.0-3) ... 380s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 380s Setting up dctrl-tools (2.24-3build2) ... 380s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 380s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 380s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 380s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 380s Setting up libpotrace0:arm64 (1.16-2) ... 380s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 380s Setting up libice6:arm64 (2:1.0.10-1build2) ... 380s Setting up liblapack3:arm64 (3.12.0-3) ... 380s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 380s Setting up 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Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 380s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 380s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 380s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 380s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 380s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 380s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 380s Setting up fontconfig (2.15.0-1ubuntu1) ... 382s Regenerating fonts cache... done. 382s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 382s Setting up libxft2:arm64 (2.3.6-1) ... 382s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 382s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 382s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 382s Setting up cpp-13 (13.2.0-17ubuntu2) ... 382s Setting up libtk8.6:arm64 (8.6.13-2) ... 382s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 382s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 382s Setting up 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gfortran-13 (13.2.0-17ubuntu2) ... 382s Setting up r-base-core (4.3.2-1build1) ... 382s 382s Creating config file /etc/R/Renviron with new version 382s Setting up r-cran-crayon (1.5.2-1) ... 382s Setting up r-cran-sourcetools (0.1.7-1-1) ... 382s Setting up r-cran-xml (3.99-0.16.1-1) ... 382s Setting up texlive-binaries (2023.20230311.66589-9) ... 382s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 382s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 382s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 382s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 382s Setting up r-cran-commonmark (1.9.1-1) ... 382s Setting up r-cran-r6 (2.5.1-1) ... 382s Setting up r-cran-pkgkitten (0.2.3-1) ... 382s Setting up texlive-base (2023.20240207-1) ... 383s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 383s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 384s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 384s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 384s Setting up r-cran-magrittr (2.0.3-1) ... 384s Setting up r-cran-rappdirs (0.3.3-1) ... 384s Setting up r-cran-littler (0.3.19-1) ... 384s Setting up r-cran-bh (1.84.0-1) ... 384s Setting up r-cran-fs (1.6.3+dfsg-1) ... 384s Setting up r-cran-rcpp (1.0.12-1) ... 385s Setting up r-bioc-biocgenerics (0.48.1-2) ... 385s Setting up r-cran-rlang (1.1.3-1) ... 385s Setting up littler (0.3.19-1) ... 385s Setting up r-cran-xfun (0.41+dfsg-1) ... 385s Setting up r-cran-withr (2.5.0-1) ... 385s Setting up r-cran-mime (0.12-1) ... 385s Setting up r-cran-base64enc (0.1-3-3) ... 385s Setting up r-cran-digest (0.6.34-1) ... 385s Setting up r-cran-yaml (2.3.8-1) ... 385s Setting up r-cran-evaluate (0.23-1) ... 385s Setting up r-cran-highr (0.10+dfsg-1) ... 385s Setting up r-cran-glue (1.7.0-1) ... 385s Setting up r-cran-xtable (1:1.8-4-2) ... 385s Setting up r-cran-cli (3.6.2-1) ... 385s Setting up gfortran (4:13.2.0-7ubuntu1) ... 385s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 385s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 385s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 385s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 385s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 385s Setting up r-cran-bitops (1.0-7-1) ... 385s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 385s Setting up r-cran-fastmap (1.1.1-1) ... 385s Setting up r-bioc-biobase (2.62.0-1) ... 385s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 385s Setting up r-cran-stringi (1.8.3-1) ... 385s Setting up texlive-latex-base (2023.20240207-1) ... 385s Setting up r-cran-runit (0.4.32-3) ... 385s Setting up r-cran-later (1.3.2+dfsg-1) ... 385s Setting up r-cran-tinytex (0.49-1) ... 385s Setting up r-cran-knitr (1.45+dfsg-1) ... 385s Setting up g++ (4:13.2.0-7ubuntu1) ... 385s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 385s Setting up r-cran-cachem (1.0.8-1) ... 385s Setting up build-essential (12.10ubuntu1) ... 385s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 385s Setting up r-cran-vctrs (0.6.5-1) ... 385s Setting up r-bioc-graph (1.80.0-1) ... 385s Setting up r-cran-ellipsis (0.3.2-2) ... 385s Setting up r-bioc-rbgl (1.78.0+dfsg-1) ... 385s Setting up r-bioc-biocviews (1.70.0-1) ... 385s Setting up r-base-dev (4.3.2-1build1) ... 385s Setting up r-cran-stringr (1.5.1-1) ... 385s Setting up texlive-bibtex-extra (2023.20240207-1) ... 385s Setting up r-cran-memoise (2.0.1-1) ... 385s Setting up r-cran-promises (1.2.1+dfsg-1) ... 385s Setting up r-cran-htmltools (0.5.7-1) ... 385s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 385s Setting up r-cran-sass (0.4.8+dfsg-1) ... 385s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 385s Setting up r-cran-fontawesome (0.5.2-1) ... 385s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 385s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 385s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 385s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 385s Setting up r-cran-bookdown (0.37+dfsg-1) ... 385s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 385s Setting up autopkgtest-satdep (0) ... 385s Processing triggers for man-db (2.12.0-3) ... 386s Processing triggers for install-info (7.1-3) ... 386s Processing triggers for libc-bin (2.39-0ubuntu2) ... 387s Processing triggers for tex-common (6.18) ... 387s Running updmap-sys. This may take some time... done. 387s Running mktexlsr /var/lib/texmf ... done. 387s Building format(s) --all. 425s This may take some time... done. 434s (Reading database ... 118624 files and directories currently installed.) 434s Removing autopkgtest-satdep (0) ... 435s autopkgtest [17:30:28]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 435s autopkgtest [17:30:28]: test pkg-r-autopkgtest: [----------------------- 435s Test: Try to load the R library biocViews 436s 436s R version 4.3.2 (2023-10-31) -- "Eye Holes" 436s Copyright (C) 2023 The R Foundation for Statistical Computing 436s Platform: aarch64-unknown-linux-gnu (64-bit) 436s 436s R is free software and comes with ABSOLUTELY NO WARRANTY. 436s You are welcome to redistribute it under certain conditions. 436s Type 'license()' or 'licence()' for distribution details. 436s 436s R is a collaborative project with many contributors. 436s Type 'contributors()' for more information and 436s 'citation()' on how to cite R or R packages in publications. 436s 436s Type 'demo()' for some demos, 'help()' for on-line help, or 436s 'help.start()' for an HTML browser interface to help. 436s Type 'q()' to quit R. 436s 436s > library('biocViews') 437s > 437s > 437s Other tests are currently unsupported! 437s They will be progressively added. 437s autopkgtest [17:30:30]: test pkg-r-autopkgtest: -----------------------] 438s pkg-r-autopkgtest PASS 438s autopkgtest [17:30:31]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 438s autopkgtest [17:30:31]: @@@@@@@@@@@@@@@@@@@@ summary 438s pkg-r-autopkgtest PASS 449s Creating nova instance adt-noble-arm64-r-bioc-biocviews-20240316-172313-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...