0s autopkgtest [13:52:04]: starting date and time: 2024-03-16 13:52:04+0000 0s autopkgtest [13:52:04]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:52:04]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ol5ightn/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-rcurl,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-biocviews --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-rcurl/1.98-1.14+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-12.secgroup --name adt-noble-arm64-r-bioc-biocviews-20240316-135204-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 145s autopkgtest [13:54:29]: testbed dpkg architecture: arm64 145s autopkgtest [13:54:29]: testbed apt version: 2.7.12 145s autopkgtest [13:54:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 147s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 148s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 148s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 148s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 148s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 148s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 148s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 148s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 148s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 148s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 149s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 149s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 149s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 159s Fetched 9092 kB in 5s (1761 kB/s) 160s Reading package lists... 166s Reading package lists... 167s Building dependency tree... 167s Reading state information... 169s Calculating upgrade... 170s The following packages will be REMOVED: 170s libssl3 170s The following NEW packages will be installed: 170s libssl3t64 170s The following packages have been kept back: 170s curl 170s The following packages will be upgraded: 170s openssl 170s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 170s Need to get 2753 kB of archives. 170s After this operation, 72.7 kB of additional disk space will be used. 170s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 171s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 172s Fetched 2753 kB in 1s (3182 kB/s) 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 172s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 172s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 173s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 173s wget depends on libssl3 (>= 3.0.0). 173s u-boot-tools depends on libssl3 (>= 3.0.0). 173s tnftp depends on libssl3 (>= 3.0.0). 173s tcpdump depends on libssl3 (>= 3.0.0). 173s systemd-resolved depends on libssl3 (>= 3.0.0). 173s systemd depends on libssl3 (>= 3.0.0). 173s sudo depends on libssl3 (>= 3.0.0). 173s sbsigntool depends on libssl3 (>= 3.0.0). 173s rsync depends on libssl3 (>= 3.0.0). 173s python3-cryptography depends on libssl3 (>= 3.0.0). 173s openssh-server depends on libssl3 (>= 3.0.10). 173s openssh-client depends on libssl3 (>= 3.0.10). 173s mtd-utils depends on libssl3 (>= 3.0.0). 173s mokutil depends on libssl3 (>= 3.0.0). 173s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 173s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 173s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 173s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 173s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 173s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 173s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 173s libnvme1 depends on libssl3 (>= 3.0.0). 173s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 173s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 173s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 173s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 173s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 173s kmod depends on libssl3 (>= 3.0.0). 173s dhcpcd-base depends on libssl3 (>= 3.0.0). 173s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 173s 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 173s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 173s Selecting previously unselected package libssl3t64:arm64. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 173s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 173s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 173s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 173s Setting up openssl (3.0.13-0ubuntu1) ... 173s Processing triggers for man-db (2.12.0-3) ... 175s Processing triggers for libc-bin (2.39-0ubuntu2) ... 176s Reading package lists... 176s Building dependency tree... 176s Reading state information... 178s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 179s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 179s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 179s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 179s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 185s Reading package lists... 185s Reading package lists... 186s Building dependency tree... 186s Reading state information... 187s Calculating upgrade... 188s The following packages have been kept back: 188s curl 188s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 188s Reading package lists... 189s Building dependency tree... 189s Reading state information... 191s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 195s autopkgtest [13:55:19]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 195s autopkgtest [13:55:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biocviews 198s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocviews 1.70.0-1 (dsc) [2187 B] 198s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocviews 1.70.0-1 (tar) [518 kB] 198s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocviews 1.70.0-1 (diff) [5836 B] 199s gpgv: Signature made Thu Nov 30 09:24:43 2023 UTC 199s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 199s gpgv: issuer "tille@debian.org" 199s gpgv: Can't check signature: No public key 199s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biocviews_1.70.0-1.dsc: no acceptable signature found 199s autopkgtest [13:55:23]: testing package r-bioc-biocviews version 1.70.0-1 200s autopkgtest [13:55:24]: build not needed 202s autopkgtest [13:55:26]: test pkg-r-autopkgtest: preparing testbed 204s Reading package lists... 205s Building dependency tree... 205s Reading state information... 206s Starting pkgProblemResolver with broken count: 0 206s Starting 2 pkgProblemResolver with broken count: 0 206s Done 208s The following additional packages will be installed: 208s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 208s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 208s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 208s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 208s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 208s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 208s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 208s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 208s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 208s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 208s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 208s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 208s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 208s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 208s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 208s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 208s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 208s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 208s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 208s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 208s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 208s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 208s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 208s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 208s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 208s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 208s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 208s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 208s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biobase 208s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocviews r-bioc-graph 208s r-bioc-rbgl r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bitops 208s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark 208s r-cran-crayon r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fastmap 208s r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools 208s r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later 208s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime 208s r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp 208s r-cran-rcurl r-cran-rlang r-cran-rmarkdown r-cran-runit r-cran-sass 208s r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tinytex 208s r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml 208s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 208s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 208s zlib1g-dev 208s Suggested packages: 208s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 208s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 208s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 208s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 208s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 208s libboost-context1.83-dev libboost-contract1.83-dev 208s libboost-coroutine1.83-dev libboost-date-time1.83-dev 208s libboost-exception1.83-dev libboost-fiber1.83-dev 208s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 208s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 208s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 208s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 208s libboost-numpy1.83-dev libboost-program-options1.83-dev 208s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 208s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 208s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 208s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 208s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 208s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 208s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 208s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 208s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 208s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 208s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 208s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 208s r-bioc-all r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges 208s r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi 208s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-sparsem r-cran-cluster 208s r-cran-rstudioapi r-cran-markdown r-cran-testthat r-cran-getopt r-cran-covr 208s r-cran-httr r-cran-roxygen2 r-cran-inline r-cran-callr r-cran-plm r-cran-zoo 208s r-cran-survival debhelper ghostscript gv | postscript-viewer perl-tk xpdf 208s | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc 208s wp2latex 208s Recommended packages: 208s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 208s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-testthat 208s r-cran-curl r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi 208s r-cran-miniui r-cran-rsconnect r-cran-tibble r-cran-testit r-cran-tufte 208s r-cran-xml2 r-cran-webshot r-cran-ggplot2 r-cran-thematic r-cran-callr 208s r-cran-covr r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot 208s r-cran-whoami r-cran-lattice r-cran-dplyr r-cran-rsvg r-cran-pillar 208s r-cran-spelling r-cran-dbi r-cran-rsqlite r-cran-waldo r-cran-cairo 208s r-cran-markdown r-cran-ragg r-cran-httr r-cran-r.rsp r-cran-sf 208s r-cran-codetools r-cran-formatr r-cran-gridsvg r-cran-jpeg r-cran-magick 208s r-cran-png r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 208s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-future r-cran-purrr 208s r-cran-usethis r-cran-dygraphs r-cran-bit64 r-cran-generics r-cran-pkgdown 208s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 208s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 208s The following packages will be REMOVED: 208s libcurl4 libpsl5 208s The following NEW packages will be installed: 208s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 208s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 208s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 208s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 208s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 208s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 208s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 208s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 208s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 208s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 208s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 208s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 208s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 208s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 208s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 208s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 208s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 208s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 208s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 208s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 208s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 208s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 208s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 libptexenc1 208s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 208s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 208s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 208s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 208s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 208s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 208s r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle 208s r-bioc-biocviews r-bioc-graph r-bioc-rbgl r-cran-base64enc r-cran-bh 208s r-cran-biocmanager r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem 208s r-cran-cli r-cran-commonmark r-cran-crayon r-cran-digest r-cran-ellipsis 208s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue 208s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite 208s r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr 208s r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 208s r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rmarkdown 208s r-cran-runit r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi 208s r-cran-stringr r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun 208s r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 208s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 208s x11-common xdg-utils zip zlib1g-dev 208s The following packages will be upgraded: 208s curl 209s 1 upgraded, 216 newly installed, 2 to remove and 0 not upgraded. 209s Need to get 336 MB/336 MB of archives. 209s After this operation, 1212 MB of additional disk space will be used. 209s Get:1 /tmp/autopkgtest.H790sK/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B] 209s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 209s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 209s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 209s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 209s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 209s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 209s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 209s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 209s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 209s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 209s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 209s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 209s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 210s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 210s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 210s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 210s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 210s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 210s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 210s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 210s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 210s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 210s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 210s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 210s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 210s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 210s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 211s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 211s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 211s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 211s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 211s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 212s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 212s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 212s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 212s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 212s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 212s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 212s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 212s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 212s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 212s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 212s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 212s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 212s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 212s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 212s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 212s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 212s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 213s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 213s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 213s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 213s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 213s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 213s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 213s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 213s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 213s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 213s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 213s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 214s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 214s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 214s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 214s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 214s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 214s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 214s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 214s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 214s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 214s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 214s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 214s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 214s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 214s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 214s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 214s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 214s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 214s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 214s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 214s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 214s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 214s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 214s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 214s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 214s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 214s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 214s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 214s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 214s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 214s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 214s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 214s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 214s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 214s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 214s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 215s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 215s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 215s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 215s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 215s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 215s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 215s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 215s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 215s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 215s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 215s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 215s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 215s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 215s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 215s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 215s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 216s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 216s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 216s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 216s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 216s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 216s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 216s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 216s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 216s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 216s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 216s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 216s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 216s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 216s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 216s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 216s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 216s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 216s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 216s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 216s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 216s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 216s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 216s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 216s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 216s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 216s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 216s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 216s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 217s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 217s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 217s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 217s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 217s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 217s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 217s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 218s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 218s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 218s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 218s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 218s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 218s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 218s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 218s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 218s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 218s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 218s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 218s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 218s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 218s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 218s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 218s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 218s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 218s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 218s Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 220s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 220s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 220s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 220s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 220s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 220s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 220s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 220s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 220s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 220s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 220s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 220s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 220s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 220s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 220s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 220s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 220s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 220s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 220s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 220s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 220s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 220s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 220s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 220s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 220s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 220s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 220s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 220s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 220s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 220s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 220s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 220s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 220s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 220s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 220s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 220s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 220s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 220s Get:204 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 220s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 223s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 224s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 224s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 228s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 228s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 228s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 228s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rbgl arm64 1.78.0+dfsg-1 [541 kB] 228s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 228s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 228s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1build1 [793 kB] 228s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 228s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocviews all 1.70.0-1 [658 kB] 230s Preconfiguring packages ... 231s Fetched 336 MB in 20s (17.0 MB/s) 231s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 231s wget depends on libpsl5 (>= 0.16.0). 231s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 231s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 231s 231s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75852 files and directories currently installed.) 231s Removing libpsl5:arm64 (0.21.2-1build1) ... 231s Selecting previously unselected package libpsl5t64:arm64. 231s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75847 files and directories currently installed.) 231s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 231s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 231s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 231s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 232s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75853 files and directories currently installed.) 232s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 232s Selecting previously unselected package libcurl4t64:arm64. 232s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75848 files and directories currently installed.) 232s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 232s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 232s Selecting previously unselected package libc-dev-bin. 232s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 232s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 232s Selecting previously unselected package linux-libc-dev:arm64. 232s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 232s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 233s Selecting previously unselected package libcrypt-dev:arm64. 233s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 233s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 233s Selecting previously unselected package libtirpc-dev:arm64. 233s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 233s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 233s Selecting previously unselected package libnsl-dev:arm64. 233s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 233s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 233s Selecting previously unselected package rpcsvc-proto. 233s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 233s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 233s Selecting previously unselected package libc6-dev:arm64. 233s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 233s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 234s Selecting previously unselected package libisl23:arm64. 234s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 234s Unpacking libisl23:arm64 (0.26-3) ... 234s Selecting previously unselected package libmpc3:arm64. 234s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 234s Unpacking libmpc3:arm64 (1.3.1-1) ... 234s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 234s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 234s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 235s Selecting previously unselected package cpp-13. 235s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 235s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 235s Selecting previously unselected package cpp-aarch64-linux-gnu. 235s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 235s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 235s Selecting previously unselected package cpp. 235s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 235s Unpacking cpp (4:13.2.0-7ubuntu1) ... 235s Selecting previously unselected package libcc1-0:arm64. 235s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 235s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 235s Selecting previously unselected package libgomp1:arm64. 235s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 235s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 235s Selecting previously unselected package libitm1:arm64. 235s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 235s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 235s Selecting previously unselected package libatomic1:arm64. 235s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 235s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 235s Selecting previously unselected package libasan8:arm64. 236s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 236s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 236s Selecting previously unselected package liblsan0:arm64. 236s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 236s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 236s Selecting previously unselected package libtsan2:arm64. 236s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 236s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 236s Selecting previously unselected package libubsan1:arm64. 236s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 236s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 236s Selecting previously unselected package libhwasan0:arm64. 236s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 236s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 237s Selecting previously unselected package libgcc-13-dev:arm64. 237s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 237s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 237s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 237s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 237s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 239s Selecting previously unselected package gcc-13. 239s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 239s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 239s Selecting previously unselected package gcc-aarch64-linux-gnu. 239s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 239s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 239s Selecting previously unselected package gcc. 239s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 239s Unpacking gcc (4:13.2.0-7ubuntu1) ... 239s Selecting previously unselected package libstdc++-13-dev:arm64. 239s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 239s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 240s Selecting previously unselected package g++-13-aarch64-linux-gnu. 240s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 240s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 241s Selecting previously unselected package g++-13. 241s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 241s Unpacking g++-13 (13.2.0-17ubuntu2) ... 241s Selecting previously unselected package g++-aarch64-linux-gnu. 241s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 241s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 241s Selecting previously unselected package g++. 241s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 241s Unpacking g++ (4:13.2.0-7ubuntu1) ... 241s Selecting previously unselected package build-essential. 241s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 241s Unpacking build-essential (12.10ubuntu1) ... 241s Selecting previously unselected package dctrl-tools. 242s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 242s Unpacking dctrl-tools (2.24-3build2) ... 242s Selecting previously unselected package fonts-dejavu-mono. 242s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 242s Unpacking fonts-dejavu-mono (2.37-8) ... 242s Selecting previously unselected package fonts-dejavu-core. 242s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 242s Unpacking fonts-dejavu-core (2.37-8) ... 242s Selecting previously unselected package fontconfig-config. 242s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 243s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 243s Selecting previously unselected package libfontconfig1:arm64. 243s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 243s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 243s Selecting previously unselected package fontconfig. 243s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 243s Unpacking fontconfig (2.15.0-1ubuntu1) ... 243s Selecting previously unselected package fonts-font-awesome. 243s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 243s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 243s Selecting previously unselected package fonts-glyphicons-halflings. 244s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 244s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 244s Selecting previously unselected package fonts-lmodern. 244s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 244s Unpacking fonts-lmodern (2.005-1) ... 244s Selecting previously unselected package fonts-mathjax. 244s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 244s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 245s Selecting previously unselected package libgfortran5:arm64. 245s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 245s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 245s Selecting previously unselected package libgfortran-13-dev:arm64. 245s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 245s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 245s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 245s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 245s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 246s Selecting previously unselected package gfortran-13. 246s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 246s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 246s Selecting previously unselected package gfortran-aarch64-linux-gnu. 246s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 246s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 246s Selecting previously unselected package gfortran. 246s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 246s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 246s Selecting previously unselected package icu-devtools. 246s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 246s Unpacking icu-devtools (74.2-1ubuntu1) ... 246s Selecting previously unselected package javascript-common. 246s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 246s Unpacking javascript-common (11+nmu1) ... 246s Selecting previously unselected package libio-string-perl. 246s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 246s Unpacking libio-string-perl (1.08-4) ... 246s Selecting previously unselected package liblatex-tounicode-perl. 246s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 246s Unpacking liblatex-tounicode-perl (0.54-2) ... 247s Selecting previously unselected package libbibtex-parser-perl. 247s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 247s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 247s Selecting previously unselected package libblas3:arm64. 247s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 247s Unpacking libblas3:arm64 (3.12.0-3) ... 247s Selecting previously unselected package libblas-dev:arm64. 247s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 247s Unpacking libblas-dev:arm64 (3.12.0-3) ... 247s Selecting previously unselected package libboost1.83-dev:arm64. 247s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 247s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 260s Selecting previously unselected package libboost-dev:arm64. 260s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 260s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 261s Selecting previously unselected package libbz2-dev:arm64. 261s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 261s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 261s Selecting previously unselected package libpixman-1-0:arm64. 261s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 261s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 261s Selecting previously unselected package libxcb-render0:arm64. 261s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 261s Unpacking libxcb-render0:arm64 (1.15-1) ... 261s Selecting previously unselected package libxcb-shm0:arm64. 261s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 261s Unpacking libxcb-shm0:arm64 (1.15-1) ... 261s Selecting previously unselected package libxrender1:arm64. 261s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 261s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 261s Selecting previously unselected package libcairo2:arm64. 261s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 261s Unpacking libcairo2:arm64 (1.18.0-1) ... 261s Selecting previously unselected package libdatrie1:arm64. 261s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 261s Unpacking libdatrie1:arm64 (0.2.13-3) ... 261s Selecting previously unselected package libdeflate0:arm64. 261s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 261s Unpacking libdeflate0:arm64 (1.19-1) ... 262s Selecting previously unselected package libgraphite2-3:arm64. 262s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 262s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 262s Selecting previously unselected package libharfbuzz0b:arm64. 262s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 262s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 262s Selecting previously unselected package x11-common. 262s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 262s Unpacking x11-common (1:7.7+23ubuntu2) ... 262s Selecting previously unselected package libice6:arm64. 262s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 262s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 262s Selecting previously unselected package libicu-dev:arm64. 262s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 262s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 264s Selecting previously unselected package libjpeg-turbo8:arm64. 264s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 264s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 264s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 264s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 264s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 264s Selecting previously unselected package libjpeg8:arm64. 264s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 264s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 264s Selecting previously unselected package libjpeg8-dev:arm64. 264s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 264s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 264s Selecting previously unselected package libjpeg-dev:arm64. 264s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 264s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 264s Selecting previously unselected package libjs-bootstrap. 264s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 264s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 264s Selecting previously unselected package libjs-popper.js. 265s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 265s Unpacking libjs-popper.js (1.16.1+ds-6) ... 265s Selecting previously unselected package libjs-bootstrap4. 265s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 265s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 265s Selecting previously unselected package libjs-d3. 265s 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.../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 267s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 267s Selecting previously unselected package libjs-prettify. 267s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 267s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 267s Selecting previously unselected package libkpathsea6:arm64. 267s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 267s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 267s Selecting previously unselected package liblapack3:arm64. 267s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 267s Unpacking liblapack3:arm64 (3.12.0-3) ... 268s Selecting previously unselected package liblapack-dev:arm64. 268s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 268s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 269s Selecting previously unselected package liblerc4:arm64. 269s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 269s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 269s Selecting previously unselected package liblua5.4-0:arm64. 269s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 269s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 269s Selecting previously unselected package libncurses-dev:arm64. 269s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 269s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 269s Selecting previously unselected package libthai-data. 269s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 269s Unpacking libthai-data (0.1.29-2) ... 269s Selecting previously unselected package libthai0:arm64. 269s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 269s Unpacking libthai0:arm64 (0.1.29-2) ... 269s Selecting previously unselected package libpango-1.0-0:arm64. 269s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 269s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 269s Selecting previously unselected package libpangoft2-1.0-0:arm64. 270s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 270s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 270s Selecting previously unselected package libpangocairo-1.0-0:arm64. 270s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 270s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 270s Selecting previously unselected package libpaper1:arm64. 270s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 270s Unpacking libpaper1:arm64 (1.1.29) ... 270s Selecting previously unselected package libpaper-utils. 270s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 270s Unpacking libpaper-utils (1.1.29) ... 270s Selecting previously unselected package libpcre2-16-0:arm64. 270s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 270s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 270s Selecting previously unselected package libpcre2-32-0:arm64. 270s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 270s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 270s Selecting previously unselected package libpcre2-posix3:arm64. 270s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 270s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 270s Selecting previously unselected package libpcre2-dev:arm64. 270s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 270s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 271s Selecting previously unselected package libpkgconf3:arm64. 271s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 271s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 271s Selecting previously unselected package zlib1g-dev:arm64. 271s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 271s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 271s Selecting previously unselected package libpng-dev:arm64. 271s Preparing to unpack .../111-libpng-dev_1.6.43-1_arm64.deb ... 271s Unpacking libpng-dev:arm64 (1.6.43-1) ... 271s Selecting previously unselected package libpotrace0:arm64. 271s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 271s Unpacking libpotrace0:arm64 (1.16-2) ... 271s Selecting previously unselected package libptexenc1:arm64. 271s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 271s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 271s Selecting previously unselected package libreadline-dev:arm64. 271s Preparing to unpack .../114-libreadline-dev_8.2-3_arm64.deb ... 271s Unpacking libreadline-dev:arm64 (8.2-3) ... 271s Selecting previously unselected package libsharpyuv0:arm64. 271s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 271s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 271s Selecting previously unselected package libsm6:arm64. 272s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 272s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 272s Selecting previously unselected package libsynctex2:arm64. 272s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 272s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 272s Selecting previously unselected package libtcl8.6:arm64. 272s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 272s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 272s Selecting previously unselected package libteckit0:arm64. 272s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 272s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 272s Selecting previously unselected package libtexlua53-5:arm64. 272s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 272s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 272s Selecting previously unselected package libjbig0:arm64. 272s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 272s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 272s Selecting previously unselected package libwebp7:arm64. 272s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 272s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 273s Selecting previously unselected package libtiff6:arm64. 273s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 273s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 273s Selecting previously unselected package libxft2:arm64. 273s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 273s Unpacking libxft2:arm64 (2.3.6-1) ... 273s Selecting previously unselected package libxss1:arm64. 273s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 273s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 273s Selecting previously unselected package libtk8.6:arm64. 273s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 273s Unpacking libtk8.6:arm64 (8.6.13-2) ... 273s Selecting previously unselected package libxt6:arm64. 273s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_arm64.deb ... 273s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 273s Selecting previously unselected package libxmu6:arm64. 273s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 273s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 273s Selecting previously unselected package libxpm4:arm64. 273s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 273s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 274s Selecting previously unselected package libxaw7:arm64. 274s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 274s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 274s Selecting previously unselected package libxi6:arm64. 274s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 274s Unpacking libxi6:arm64 (2:1.8.1-1) ... 274s Selecting previously unselected package libzzip-0-13:arm64. 274s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 274s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 274s Selecting previously unselected package zip. 274s Preparing to unpack .../133-zip_3.0-13_arm64.deb ... 274s Unpacking zip (3.0-13) ... 274s Selecting previously unselected package unzip. 274s Preparing to unpack .../134-unzip_6.0-28ubuntu3_arm64.deb ... 274s Unpacking unzip (6.0-28ubuntu3) ... 274s Selecting previously unselected package xdg-utils. 274s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 274s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 274s Selecting previously unselected package r-base-core. 274s Preparing to unpack .../136-r-base-core_4.3.2-1build1_arm64.deb ... 274s Unpacking r-base-core (4.3.2-1build1) ... 276s Selecting previously unselected package r-cran-littler. 276s Preparing to unpack .../137-r-cran-littler_0.3.19-1_arm64.deb ... 276s Unpacking r-cran-littler (0.3.19-1) ... 276s Selecting previously unselected package littler. 276s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 276s Unpacking littler (0.3.19-1) ... 277s Selecting previously unselected package node-bootstrap-sass. 277s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 277s Unpacking node-bootstrap-sass (3.4.3-2) ... 277s Selecting previously unselected package node-html5shiv. 277s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 277s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 277s Selecting previously unselected package node-normalize.css. 277s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 277s Unpacking node-normalize.css (8.0.1-5) ... 277s Selecting previously unselected package pandoc-data. 277s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 277s Unpacking pandoc-data (3.1.3-1) ... 277s Selecting previously unselected package pandoc. 277s Preparing to unpack .../143-pandoc_3.1.3+ds-2_arm64.deb ... 277s Unpacking pandoc (3.1.3+ds-2) ... 281s Selecting previously unselected package pkgconf-bin. 281s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_arm64.deb ... 281s Unpacking pkgconf-bin (1.8.1-2) ... 282s Selecting previously unselected package pkgconf:arm64. 282s Preparing to unpack .../145-pkgconf_1.8.1-2_arm64.deb ... 282s Unpacking pkgconf:arm64 (1.8.1-2) ... 282s Selecting previously unselected package pkg-config:arm64. 282s Preparing to unpack .../146-pkg-config_1.8.1-2_arm64.deb ... 282s Unpacking pkg-config:arm64 (1.8.1-2) ... 282s Selecting previously unselected package liblzma-dev:arm64. 282s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 282s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 282s Selecting previously unselected package r-base-dev. 282s Preparing to unpack .../148-r-base-dev_4.3.2-1build1_all.deb ... 282s Unpacking r-base-dev (4.3.2-1build1) ... 282s Selecting previously unselected package pkg-r-autopkgtest. 282s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 282s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 282s Selecting previously unselected package r-bioc-biocgenerics. 282s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 282s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 282s Selecting previously unselected package r-bioc-biobase. 282s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_arm64.deb ... 282s Unpacking r-bioc-biobase (2.62.0-1) ... 283s Selecting previously unselected package r-cran-base64enc. 283s Preparing to unpack .../152-r-cran-base64enc_0.1-3-3_arm64.deb ... 283s Unpacking r-cran-base64enc (0.1-3-3) ... 283s Selecting previously unselected package r-cran-digest. 283s Preparing to unpack .../153-r-cran-digest_0.6.34-1_arm64.deb ... 283s Unpacking r-cran-digest (0.6.34-1) ... 283s Selecting previously unselected package r-cran-rlang. 283s Preparing to unpack .../154-r-cran-rlang_1.1.3-1_arm64.deb ... 283s Unpacking r-cran-rlang (1.1.3-1) ... 283s Selecting previously unselected package r-cran-ellipsis. 283s Preparing to unpack .../155-r-cran-ellipsis_0.3.2-2_arm64.deb ... 283s Unpacking r-cran-ellipsis (0.3.2-2) ... 283s Selecting previously unselected package r-cran-fastmap. 283s Preparing to unpack .../156-r-cran-fastmap_1.1.1-1_arm64.deb ... 283s Unpacking r-cran-fastmap (1.1.1-1) ... 284s Selecting previously unselected package r-cran-htmltools. 284s Preparing to unpack .../157-r-cran-htmltools_0.5.7-1_arm64.deb ... 284s Unpacking r-cran-htmltools (0.5.7-1) ... 284s Selecting previously unselected package r-cran-evaluate. 284s Preparing to unpack .../158-r-cran-evaluate_0.23-1_all.deb ... 284s Unpacking r-cran-evaluate (0.23-1) ... 284s Selecting previously unselected package r-cran-xfun. 284s Preparing to unpack .../159-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 284s Unpacking r-cran-xfun (0.41+dfsg-1) ... 284s Selecting previously unselected package r-cran-highr. 284s Preparing to unpack .../160-r-cran-highr_0.10+dfsg-1_all.deb ... 284s Unpacking r-cran-highr (0.10+dfsg-1) ... 284s Selecting previously unselected package r-cran-yaml. 284s Preparing to unpack .../161-r-cran-yaml_2.3.8-1_arm64.deb ... 284s Unpacking r-cran-yaml (2.3.8-1) ... 284s Selecting previously unselected package libjs-mathjax. 284s Preparing to unpack .../162-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 284s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 289s Selecting previously unselected package r-cran-knitr. 289s Preparing to unpack .../163-r-cran-knitr_1.45+dfsg-1_all.deb ... 289s Unpacking r-cran-knitr (1.45+dfsg-1) ... 289s Selecting previously unselected package r-cran-cachem. 289s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 289s Unpacking r-cran-cachem (1.0.8-1) ... 289s Selecting previously unselected package r-cran-jquerylib. 289s Preparing to unpack .../165-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 289s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 289s Selecting previously unselected package r-cran-jsonlite. 289s Preparing to unpack .../166-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 289s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 290s Selecting previously unselected package r-cran-cli. 290s Preparing to unpack .../167-r-cran-cli_3.6.2-1_arm64.deb ... 290s Unpacking r-cran-cli (3.6.2-1) ... 290s Selecting previously unselected package r-cran-glue. 290s Preparing to unpack .../168-r-cran-glue_1.7.0-1_arm64.deb ... 290s Unpacking r-cran-glue (1.7.0-1) ... 290s Selecting previously unselected package r-cran-lifecycle. 290s Preparing to unpack .../169-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 290s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 290s Selecting previously unselected package r-cran-memoise. 290s Preparing to unpack .../170-r-cran-memoise_2.0.1-1_all.deb ... 290s Unpacking r-cran-memoise (2.0.1-1) ... 290s Selecting previously unselected package r-cran-mime. 290s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 290s Unpacking r-cran-mime (0.12-1) ... 291s Selecting previously unselected package r-cran-fs. 291s Preparing to unpack .../172-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 291s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 291s Selecting previously unselected package r-cran-r6. 291s Preparing to unpack .../173-r-cran-r6_2.5.1-1_all.deb ... 291s Unpacking r-cran-r6 (2.5.1-1) ... 291s Selecting previously unselected package r-cran-rappdirs. 291s Preparing to unpack .../174-r-cran-rappdirs_0.3.3-1_arm64.deb ... 291s Unpacking r-cran-rappdirs (0.3.3-1) ... 291s Selecting previously unselected package r-cran-sass. 291s Preparing to unpack .../175-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 291s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 291s Selecting previously unselected package r-cran-bslib. 291s Preparing to unpack .../176-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 291s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 292s Selecting previously unselected package r-cran-fontawesome. 292s Preparing to unpack .../177-r-cran-fontawesome_0.5.2-1_all.deb ... 292s Unpacking r-cran-fontawesome (0.5.2-1) ... 292s Selecting previously unselected package r-cran-magrittr. 292s Preparing to unpack .../178-r-cran-magrittr_2.0.3-1_arm64.deb ... 292s Unpacking r-cran-magrittr (2.0.3-1) ... 292s Selecting previously unselected package r-cran-stringi. 292s Preparing to unpack .../179-r-cran-stringi_1.8.3-1_arm64.deb ... 292s Unpacking r-cran-stringi (1.8.3-1) ... 293s Selecting previously unselected package r-cran-vctrs. 293s Preparing to unpack .../180-r-cran-vctrs_0.6.5-1_arm64.deb ... 293s Unpacking r-cran-vctrs (0.6.5-1) ... 293s Selecting previously unselected package r-cran-stringr. 293s Preparing to unpack .../181-r-cran-stringr_1.5.1-1_all.deb ... 293s Unpacking r-cran-stringr (1.5.1-1) ... 293s Selecting previously unselected package r-cran-tinytex. 293s Preparing to unpack .../182-r-cran-tinytex_0.49-1_all.deb ... 293s Unpacking r-cran-tinytex (0.49-1) ... 293s Selecting previously unselected package libjs-modernizr. 293s Preparing to unpack .../183-libjs-modernizr_2.6.2+ds1-5_all.deb ... 293s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 293s Selecting previously unselected package r-cran-pkgkitten. 294s Preparing to unpack .../184-r-cran-pkgkitten_0.2.3-1_all.deb ... 294s Unpacking r-cran-pkgkitten (0.2.3-1) ... 294s Selecting previously unselected package r-cran-rcpp. 294s Preparing to unpack .../185-r-cran-rcpp_1.0.12-1_arm64.deb ... 294s Unpacking r-cran-rcpp (1.0.12-1) ... 294s Selecting previously unselected package r-cran-later. 294s Preparing to unpack .../186-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 294s Unpacking r-cran-later (1.3.2+dfsg-1) ... 295s Selecting previously unselected package r-cran-promises. 295s Preparing to unpack .../187-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 295s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 295s Selecting previously unselected package r-cran-httpuv. 295s Preparing to unpack .../188-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 295s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 295s Selecting previously unselected package r-cran-xtable. 295s Preparing to unpack .../189-r-cran-xtable_1%3a1.8-4-2_all.deb ... 295s Unpacking r-cran-xtable (1:1.8-4-2) ... 295s Selecting previously unselected package r-cran-sourcetools. 295s Preparing to unpack .../190-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 295s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 295s Selecting previously unselected package r-cran-crayon. 295s Preparing to unpack .../191-r-cran-crayon_1.5.2-1_all.deb ... 295s Unpacking r-cran-crayon (1.5.2-1) ... 296s Selecting previously unselected package r-cran-withr. 296s Preparing to unpack .../192-r-cran-withr_2.5.0-1_all.deb ... 296s Unpacking r-cran-withr (2.5.0-1) ... 296s Selecting previously unselected package r-cran-commonmark. 296s Preparing to unpack .../193-r-cran-commonmark_1.9.1-1_arm64.deb ... 296s Unpacking r-cran-commonmark (1.9.1-1) ... 296s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 296s Preparing to unpack .../194-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 296s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 296s Selecting previously unselected package r-cran-shiny. 296s Preparing to unpack .../195-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 296s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 296s Selecting previously unselected package r-cran-rmarkdown. 296s Preparing to unpack .../196-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 296s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 297s Selecting previously unselected package r-cran-bookdown. 297s Preparing to unpack .../197-r-cran-bookdown_0.37+dfsg-1_all.deb ... 297s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 297s Selecting previously unselected package r-cran-biocmanager. 297s Preparing to unpack .../198-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 297s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 297s Selecting previously unselected package tex-common. 297s Preparing to unpack .../199-tex-common_6.18_all.deb ... 297s Unpacking tex-common (6.18) ... 297s Selecting previously unselected package t1utils. 298s Preparing to unpack .../200-t1utils_1.41-4build2_arm64.deb ... 298s Unpacking t1utils (1.41-4build2) ... 298s Selecting previously unselected package texlive-binaries. 298s Preparing to unpack .../201-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 298s Unpacking texlive-binaries (2023.20230311.66589-9) ... 299s Selecting previously unselected package texlive-base. 299s Preparing to unpack .../202-texlive-base_2023.20240207-1_all.deb ... 299s Unpacking texlive-base (2023.20240207-1) ... 304s Selecting previously unselected package texlive-latex-base. 304s Preparing to unpack .../203-texlive-latex-base_2023.20240207-1_all.deb ... 304s Unpacking texlive-latex-base (2023.20240207-1) ... 306s Selecting previously unselected package texlive-bibtex-extra. 306s Preparing to unpack .../204-texlive-bibtex-extra_2023.20240207-1_all.deb ... 306s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 320s Selecting previously unselected package r-bioc-biocstyle. 320s Preparing to unpack .../205-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 320s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 320s Selecting previously unselected package r-bioc-graph. 320s Preparing to unpack .../206-r-bioc-graph_1.80.0-1_arm64.deb ... 320s Unpacking r-bioc-graph (1.80.0-1) ... 321s Selecting previously unselected package r-cran-bh. 321s Preparing to unpack .../207-r-cran-bh_1.84.0-1_all.deb ... 321s Unpacking r-cran-bh (1.84.0-1) ... 321s Selecting previously unselected package r-bioc-rbgl. 321s Preparing to unpack .../208-r-bioc-rbgl_1.78.0+dfsg-1_arm64.deb ... 321s Unpacking r-bioc-rbgl (1.78.0+dfsg-1) ... 321s Selecting previously unselected package r-cran-xml. 321s Preparing to unpack .../209-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 321s Unpacking r-cran-xml (3.99-0.16.1-1) ... 321s Selecting previously unselected package r-cran-bitops. 321s Preparing to unpack .../210-r-cran-bitops_1.0-7-1_arm64.deb ... 321s Unpacking r-cran-bitops (1.0-7-1) ... 321s Selecting previously unselected package r-cran-rcurl. 322s Preparing to unpack .../211-r-cran-rcurl_1.98-1.14+dfsg-1build1_arm64.deb ... 322s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1build1) ... 322s Selecting previously unselected package r-cran-runit. 322s Preparing to unpack .../212-r-cran-runit_0.4.32-3_all.deb ... 322s Unpacking r-cran-runit (0.4.32-3) ... 322s Selecting previously unselected package r-bioc-biocviews. 322s Preparing to unpack .../213-r-bioc-biocviews_1.70.0-1_all.deb ... 322s Unpacking r-bioc-biocviews (1.70.0-1) ... 322s Selecting previously unselected package autopkgtest-satdep. 322s Preparing to unpack .../214-1-autopkgtest-satdep.deb ... 322s Unpacking autopkgtest-satdep (0) ... 322s Setting up libjs-json (0~20221030+~1.0.8-1) ... 322s Setting up javascript-common (11+nmu1) ... 322s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 322s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 322s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 322s Setting up libpaper1:arm64 (1.1.29) ... 323s 323s Creating config file /etc/papersize with new version 323s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 323s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 323s Setting up libxpm4:arm64 (1:3.5.17-1) ... 323s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 323s Setting up libxi6:arm64 (2:1.8.1-1) ... 323s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 323s Setting up libdatrie1:arm64 (0.2.13-3) ... 323s Setting up libjs-popper.js (1.16.1+ds-6) ... 323s Setting up libxcb-render0:arm64 (1.15-1) ... 323s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 323s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 323s Setting up libjs-lunr (2.3.9~dfsg-2) ... 323s Setting up unzip (6.0-28ubuntu3) ... 323s Setting up liblatex-tounicode-perl (0.54-2) ... 323s Setting up x11-common (1:7.7+23ubuntu2) ... 325s Setting up node-html5shiv (3.7.3+dfsg-5) ... 325s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 325s Setting up libdeflate0:arm64 (1.19-1) ... 325s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 325s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 325s Setting up libxcb-shm0:arm64 (1.15-1) ... 325s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 325s Setting up libpaper-utils (1.1.29) ... 325s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 325s Setting up libjs-modernizr (2.6.2+ds1-5) ... 325s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 325s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 325s Setting up libjs-es5-shim (4.6.7-2) ... 325s Setting up tex-common (6.18) ... 326s update-language: texlive-base not installed and configured, doing nothing! 326s Setting up libio-string-perl (1.08-4) ... 326s Setting up zip (3.0-13) ... 326s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 326s Setting up libblas3:arm64 (3.12.0-3) ... 326s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 326s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 326s Setting up libpkgconf3:arm64 (1.8.1-2) ... 326s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 326s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 326s Setting up t1utils (1.41-4build2) ... 326s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 326s Setting up libjs-d3 (3.5.17-4) ... 326s Setting up fonts-dejavu-mono (2.37-8) ... 326s Setting up libmpc3:arm64 (1.3.1-1) ... 326s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 326s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 326s Setting up icu-devtools (74.2-1ubuntu1) ... 326s Setting up fonts-dejavu-core (2.37-8) ... 326s Setting up pkgconf-bin (1.8.1-2) ... 326s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 326s Setting up libkpathsea6:arm64 (2023.20230311.66589-9) ... 326s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 326s Setting up libwebp7:arm64 (1.3.2-0.4) ... 326s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 326s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 326s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 326s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 326s Setting up libnsl-dev:arm64 (1.3.0-3) ... 326s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 326s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 326s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 326s Setting up fonts-lmodern (2.005-1) ... 326s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 326s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 326s Setting up libthai-data (0.1.29-2) ... 326s Setting up node-bootstrap-sass (3.4.3-2) ... 326s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 326s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 326s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 326s Setting up pandoc-data (3.1.3-1) ... 326s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 326s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 326s Setting up libisl23:arm64 (0.26-3) ... 326s Setting up libc-dev-bin (2.39-0ubuntu2) ... 326s Setting up node-normalize.css (8.0.1-5) ... 326s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 326s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 326s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 326s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 326s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 326s Setting up libblas-dev:arm64 (3.12.0-3) ... 326s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 326s Setting up dctrl-tools (2.24-3build2) ... 326s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 326s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 327s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 327s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 327s Setting up libpotrace0:arm64 (1.16-2) ... 327s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 327s Setting up libice6:arm64 (2:1.0.10-1build2) ... 327s Setting up liblapack3:arm64 (3.12.0-3) ... 327s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 327s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 327s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 327s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 327s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 327s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 327s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 327s Setting up pkgconf:arm64 (1.8.1-2) ... 327s Setting up libthai0:arm64 (0.1.29-2) ... 327s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 327s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 327s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 327s Setting up pandoc (3.1.3+ds-2) ... 327s Setting up liblapack-dev:arm64 (3.12.0-3) ... 327s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 327s Setting up pkg-config:arm64 (1.8.1-2) ... 327s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 327s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 327s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 327s Setting up curl (8.5.0-2ubuntu7) ... 327s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 327s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 327s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 327s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 327s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 327s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 327s Setting up fontconfig (2.15.0-1ubuntu1) ... 330s Regenerating fonts cache... done. 330s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 330s Setting up libxft2:arm64 (2.3.6-1) ... 330s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 330s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 330s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 330s Setting up cpp-13 (13.2.0-17ubuntu2) ... 330s Setting up libtk8.6:arm64 (8.6.13-2) ... 330s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 330s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 330s Setting up libreadline-dev:arm64 (8.2-3) ... 330s Setting up libcairo2:arm64 (1.18.0-1) ... 330s Setting up gcc-13 (13.2.0-17ubuntu2) ... 330s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 330s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 330s Setting up cpp (4:13.2.0-7ubuntu1) ... 330s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 330s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 330s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 330s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 330s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 330s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 330s Setting up g++-13 (13.2.0-17ubuntu2) ... 330s 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(4:13.2.0-7ubuntu1) ... 331s Setting up r-cran-commonmark (1.9.1-1) ... 331s Setting up r-cran-r6 (2.5.1-1) ... 331s Setting up r-cran-pkgkitten (0.2.3-1) ... 331s Setting up texlive-base (2023.20240207-1) ... 334s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 334s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 335s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 336s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 338s Setting up r-cran-magrittr (2.0.3-1) ... 338s Setting up r-cran-rappdirs (0.3.3-1) ... 338s Setting up r-cran-littler (0.3.19-1) ... 338s Setting up r-cran-bh (1.84.0-1) ... 338s Setting up r-cran-fs (1.6.3+dfsg-1) ... 338s Setting up r-cran-rcpp (1.0.12-1) ... 338s Setting up r-bioc-biocgenerics (0.48.1-2) ... 338s Setting up r-cran-rlang (1.1.3-1) ... 338s Setting up littler (0.3.19-1) ... 338s Setting up r-cran-xfun (0.41+dfsg-1) ... 338s Setting up r-cran-withr (2.5.0-1) ... 338s Setting up r-cran-mime (0.12-1) ... 338s Setting up r-cran-base64enc (0.1-3-3) ... 338s Setting up r-cran-digest (0.6.34-1) ... 338s Setting up r-cran-yaml (2.3.8-1) ... 338s Setting up r-cran-evaluate (0.23-1) ... 338s Setting up r-cran-highr (0.10+dfsg-1) ... 338s Setting up r-cran-glue (1.7.0-1) ... 338s Setting up r-cran-xtable (1:1.8-4-2) ... 338s Setting up r-cran-cli (3.6.2-1) ... 338s Setting up gfortran (4:13.2.0-7ubuntu1) ... 338s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 338s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 338s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 338s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 338s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 338s Setting up r-cran-bitops (1.0-7-1) ... 338s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 338s Setting up r-cran-fastmap (1.1.1-1) ... 338s Setting up r-bioc-biobase (2.62.0-1) ... 338s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 338s Setting up r-cran-stringi (1.8.3-1) ... 338s Setting up texlive-latex-base (2023.20240207-1) ... 338s Setting up r-cran-runit (0.4.32-3) ... 338s Setting up r-cran-later (1.3.2+dfsg-1) ... 338s Setting up r-cran-tinytex (0.49-1) ... 338s Setting up r-cran-knitr (1.45+dfsg-1) ... 338s Setting up g++ (4:13.2.0-7ubuntu1) ... 338s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 338s Setting up r-cran-cachem (1.0.8-1) ... 338s Setting up build-essential (12.10ubuntu1) ... 338s Setting up r-cran-rcurl (1.98-1.14+dfsg-1build1) ... 338s Setting up r-cran-vctrs (0.6.5-1) ... 338s Setting up r-bioc-graph (1.80.0-1) ... 338s Setting up r-cran-ellipsis (0.3.2-2) ... 338s Setting up r-bioc-rbgl (1.78.0+dfsg-1) ... 338s Setting up r-bioc-biocviews (1.70.0-1) ... 338s Setting up r-base-dev (4.3.2-1build1) ... 338s Setting up r-cran-stringr (1.5.1-1) ... 338s Setting up texlive-bibtex-extra (2023.20240207-1) ... 338s Setting up r-cran-memoise (2.0.1-1) ... 338s Setting up r-cran-promises (1.2.1+dfsg-1) ... 338s Setting up r-cran-htmltools (0.5.7-1) ... 338s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 338s Setting up r-cran-sass (0.4.8+dfsg-1) ... 338s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 338s Setting up r-cran-fontawesome (0.5.2-1) ... 338s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 338s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 338s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 338s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 338s Setting up r-cran-bookdown (0.37+dfsg-1) ... 338s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 338s Setting up autopkgtest-satdep (0) ... 338s Processing triggers for man-db (2.12.0-3) ... 341s Processing triggers for install-info (7.1-3) ... 342s Processing triggers for libc-bin (2.39-0ubuntu2) ... 342s Processing triggers for tex-common (6.18) ... 343s Running updmap-sys. This may take some time... done. 343s Running mktexlsr /var/lib/texmf ... done. 344s Building format(s) --all. 460s This may take some time... done. 486s (Reading database ... 120148 files and directories currently installed.) 486s Removing autopkgtest-satdep (0) ... 487s autopkgtest [14:00:11]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 487s autopkgtest [14:00:11]: test pkg-r-autopkgtest: [----------------------- 488s Test: Try to load the R library biocViews 488s 488s R version 4.3.2 (2023-10-31) -- "Eye Holes" 488s Copyright (C) 2023 The R Foundation for Statistical Computing 488s Platform: aarch64-unknown-linux-gnu (64-bit) 488s 488s R is free software and comes with ABSOLUTELY NO WARRANTY. 488s You are welcome to redistribute it under certain conditions. 488s Type 'license()' or 'licence()' for distribution details. 488s 488s R is a collaborative project with many contributors. 488s Type 'contributors()' for more information and 488s 'citation()' on how to cite R or R packages in publications. 488s 488s Type 'demo()' for some demos, 'help()' for on-line help, or 488s 'help.start()' for an HTML browser interface to help. 488s Type 'q()' to quit R. 488s 489s > library('biocViews') 492s > 492s > 492s Other tests are currently unsupported! 492s They will be progressively added. 492s autopkgtest [14:00:16]: test pkg-r-autopkgtest: -----------------------] 493s pkg-r-autopkgtest PASS 493s autopkgtest [14:00:17]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 493s autopkgtest [14:00:17]: @@@@@@@@@@@@@@@@@@@@ summary 493s pkg-r-autopkgtest PASS 504s Creating nova instance adt-noble-arm64-r-bioc-biocviews-20240316-135204-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...