0s autopkgtest [17:23:03]: starting date and time: 2024-03-16 17:23:03+0000
  0s autopkgtest [17:23:03]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [17:23:03]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ta80t199/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-biocversion --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-30.secgroup --name adt-noble-arm64-r-bioc-biocversion-20240316-172303-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
1284s autopkgtest [17:44:27]: testbed dpkg architecture: arm64
1287s autopkgtest [17:44:30]: testbed apt version: 2.7.12
1287s autopkgtest [17:44:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup
1303s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
1312s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
1314s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB]
1322s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
1323s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB]
1324s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
1326s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
1326s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
1327s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
1327s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB]
1338s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
1338s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB]
1339s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
1468s Fetched 9060 kB in 1min 20s (113 kB/s)
1476s Reading package lists...
1523s Reading package lists...
1528s Building dependency tree...
1528s Reading state information...
1537s Calculating upgrade...
1542s The following packages will be REMOVED:
1542s   libglib2.0-0 libssl3
1542s The following NEW packages will be installed:
1542s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
1542s The following packages have been kept back:
1542s   curl
1542s The following packages will be upgraded:
1543s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
1544s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
1544s Need to get 4592 kB of archives.
1544s After this operation, 211 kB of additional disk space will be used.
1544s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
1544s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
1546s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
1546s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
1548s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
1548s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
1548s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
1548s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
1558s Fetched 4592 kB in 5s (975 kB/s)
1561s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75850 files and directories currently installed.)
1561s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
1561s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
1563s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
1563s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
1563s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
1563s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
1563s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
1563s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
1563s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
1563s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
1563s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
1563s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
1563s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
1563s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
1563s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
1563s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
1563s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
1563s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
1563s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
1563s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
1563s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
1563s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
1563s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
1563s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
1563s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
1563s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
1563s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
1563s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
1563s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
1563s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
1563s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
1563s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
1563s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
1563s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
1563s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
1563s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
1563s  fwupd depends on libglib2.0-0 (>= 2.79.0).
1563s  bolt depends on libglib2.0-0 (>= 2.56.0).
1563s 
1564s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75850 files and directories currently installed.)
1564s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
1565s Selecting previously unselected package libglib2.0-0t64:arm64.
1566s (Reading database ... 
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(Reading database ... 10%
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(Reading database ... 20%
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75825 files and directories currently installed.)
1566s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
1567s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
1567s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
1567s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
1568s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
1568s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
1573s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
1573s  wget depends on libssl3 (>= 3.0.0).
1573s  u-boot-tools depends on libssl3 (>= 3.0.0).
1573s  tnftp depends on libssl3 (>= 3.0.0).
1573s  tcpdump depends on libssl3 (>= 3.0.0).
1573s  systemd-resolved depends on libssl3 (>= 3.0.0).
1573s  systemd depends on libssl3 (>= 3.0.0).
1573s  sudo depends on libssl3 (>= 3.0.0).
1573s  sbsigntool depends on libssl3 (>= 3.0.0).
1573s  rsync depends on libssl3 (>= 3.0.0).
1573s  python3-cryptography depends on libssl3 (>= 3.0.0).
1573s  openssh-server depends on libssl3 (>= 3.0.10).
1573s  openssh-client depends on libssl3 (>= 3.0.10).
1573s  mtd-utils depends on libssl3 (>= 3.0.0).
1573s  mokutil depends on libssl3 (>= 3.0.0).
1573s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
1573s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
1573s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
1573s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
1573s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
1573s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
1573s  libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0).
1573s  libnvme1 depends on libssl3 (>= 3.0.0).
1573s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
1573s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
1573s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
1573s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
1573s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
1573s  kmod depends on libssl3 (>= 3.0.0).
1573s  dhcpcd-base depends on libssl3 (>= 3.0.0).
1573s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
1573s 
1574s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75850 files and directories currently installed.)
1574s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
1575s Selecting previously unselected package libssl3t64:arm64.
1575s (Reading database ... 
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(Reading database ... 55%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75839 files and directories currently installed.)
1576s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
1576s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
1578s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
1578s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
1578s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ...
1578s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
1579s Preparing to unpack .../readline-common_8.2-3.1_all.deb ...
1579s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
1580s Selecting previously unselected package xdg-user-dirs.
1580s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ...
1580s Unpacking xdg-user-dirs (0.18-1) ...
1581s Setting up xdg-user-dirs (0.18-1) ...
1581s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
1581s Setting up libtirpc-common (1.3.4+ds-1.1) ...
1581s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
1581s No schema files found: doing nothing.
1581s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
1581s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
1581s Setting up openssl (3.0.13-0ubuntu1) ...
1581s Setting up readline-common (8.2-3.1) ...
1581s Processing triggers for man-db (2.12.0-3) ...
1592s Processing triggers for install-info (7.1-3) ...
1596s Processing triggers for libc-bin (2.39-0ubuntu2) ...
1603s Reading package lists...
1607s Building dependency tree...
1607s Reading state information...
1615s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
1619s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
1619s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
1619s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
1619s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
1668s Reading package lists...
1669s Reading package lists...
1673s Building dependency tree...
1673s Reading state information...
1683s Calculating upgrade...
1687s The following packages have been kept back:
1687s   curl
1687s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
1688s Reading package lists...
1692s Building dependency tree...
1692s Reading state information...
1700s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
1718s autopkgtest [17:51:41]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
1719s autopkgtest [17:51:42]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biocversion
1737s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocversion 3.18.1-1 (dsc) [2099 B]
1737s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocversion 3.18.1-1 (tar) [973 B]
1737s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocversion 3.18.1-1 (diff) [4836 B]
1741s gpgv: Signature made Wed Nov 29 16:15:27 2023 UTC
1741s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
1741s gpgv:                issuer "tille@debian.org"
1741s gpgv: Can't check signature: No public key
1741s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biocversion_3.18.1-1.dsc: no acceptable signature found
1743s autopkgtest [17:52:06]: testing package r-bioc-biocversion version 3.18.1-1
1745s autopkgtest [17:52:08]: build not needed
1747s autopkgtest [17:52:10]: test pkg-r-autopkgtest: preparing testbed
1755s Reading package lists...
1760s Building dependency tree...
1760s Reading state information...
1767s Starting pkgProblemResolver with broken count: 0
1769s Starting 2 pkgProblemResolver with broken count: 0
1769s Done
1779s The following additional packages will be installed:
1779s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
1779s   curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core
1779s   fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu
1779s   gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran
1779s   gfortran-13 gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu
1779s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libbz2-dev
1779s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64
1779s   libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev
1779s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
1779s   libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
1779s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4
1779s   liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0
1779s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
1779s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
1779s   libpng-dev libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64
1779s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
1779s   libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7
1779s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
1779s   linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core
1779s   r-base-dev r-bioc-biocgenerics r-bioc-biocversion rpcsvc-proto unzip
1779s   x11-common xdg-utils zip zlib1g-dev
1779s Suggested packages:
1779s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
1779s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
1779s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
1779s   liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc
1779s   libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib
1779s   r-base-html texlive-base texlive-latex-base texlive-plain-generic
1779s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
1779s   texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
1779s   r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray
1779s   r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
1779s   r-bioc-deseq2 r-bioc-annotate r-cran-runit
1779s Recommended packages:
1779s   bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended
1779s   r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
1779s   x11-utils x11-xserver-utils
1782s The following packages will be REMOVED:
1782s   libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3
1782s The following NEW packages will be installed:
1782s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
1782s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
1782s   fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu
1782s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
1782s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
1782s   gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev
1782s   libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev
1782s   libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
1782s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
1782s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
1782s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
1782s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
1782s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
1782s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
1782s   libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64
1782s   libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev
1782s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6
1782s   libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1
1782s   libxss1 libxt6t64 linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf
1782s   pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocversion
1782s   rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
1782s The following packages will be upgraded:
1782s   curl
1784s 1 upgraded, 113 newly installed, 5 to remove and 0 not upgraded.
1784s Need to get 131 MB/131 MB of archives.
1784s After this operation, 419 MB of additional disk space will be used.
1784s Get:1 /tmp/autopkgtest.SXXPJk/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B]
1784s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB]
1785s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB]
1785s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB]
1785s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB]
1785s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB]
1785s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB]
1785s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
1785s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
1787s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
1787s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB]
1787s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
1787s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
1787s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
1788s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
1788s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
1788s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
1791s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
1791s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
1792s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
1792s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
1792s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
1792s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
1792s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
1792s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
1793s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
1793s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
1794s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
1795s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
1796s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
1797s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
1808s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
1809s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
1809s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
1809s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
1810s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
1813s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
1813s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
1813s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
1813s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
1813s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
1813s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
1813s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
1814s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
1814s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
1814s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
1814s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
1814s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
1814s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
1818s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
1818s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
1818s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
1818s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
1819s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
1819s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
1819s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
1819s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
1819s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
1819s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
1819s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
1819s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
1820s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
1820s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
1820s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
1820s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
1820s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
1820s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
1820s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
1825s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
1825s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
1825s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
1825s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
1825s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
1825s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
1826s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
1827s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
1827s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
1828s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
1828s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
1828s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
1828s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
1828s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
1828s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
1828s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
1828s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
1828s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
1828s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
1828s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
1829s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
1829s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
1829s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB]
1830s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB]
1830s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
1830s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
1830s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
1830s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
1830s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
1830s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
1831s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
1831s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
1831s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
1831s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB]
1831s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
1831s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
1832s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
1832s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
1832s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
1832s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
1832s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB]
1847s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
1847s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B]
1847s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
1847s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
1848s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB]
1858s Preconfiguring packages ...
1861s Fetched 131 MB in 1min 5s (2023 kB/s)
1861s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested:
1861s  wget depends on libpsl5 (>= 0.16.0).
1861s  libcurl4:arm64 depends on libpsl5 (>= 0.16.0).
1861s  libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0).
1861s 
1862s (Reading database ... 
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75866 files and directories currently installed.)
1863s Removing libpsl5:arm64 (0.21.2-1build1) ...
1864s Selecting previously unselected package libpsl5t64:arm64.
1865s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75861 files and directories currently installed.)
1865s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ...
1865s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ...
1867s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ...
1867s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
1870s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75867 files and directories currently installed.)
1870s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ...
1872s Selecting previously unselected package libcurl4t64:arm64.
1872s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75862 files and directories currently installed.)
1872s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ...
1872s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
1873s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested:
1873s  libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2).
1873s  libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1).
1873s 
1874s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75868 files and directories currently installed.)
1874s Removing libpng16-16:arm64 (1.6.43-1) ...
1875s Selecting previously unselected package libpng16-16t64:arm64.
1875s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75858 files and directories currently installed.)
1876s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ...
1876s Unpacking libpng16-16t64:arm64 (1.6.43-3) ...
1876s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested:
1876s  parted depends on libreadline8 (>= 6.0).
1876s  libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
1876s  libpython3.11-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
1876s  gpgsm depends on libreadline8 (>= 6.0).
1876s  gpgconf depends on libreadline8 (>= 6.0).
1876s  gpg depends on libreadline8 (>= 6.0).
1876s  gawk depends on libreadline8 (>= 6.0).
1876s  fdisk depends on libreadline8 (>= 6.0).
1876s 
1877s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75869 files and directories currently installed.)
1877s Removing libreadline8:arm64 (8.2-3) ...
1878s Selecting previously unselected package libreadline8t64:arm64.
1879s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75857 files and directories currently installed.)
1879s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ...
1879s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
1879s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
1879s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
1879s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
1879s Unpacking libreadline8t64:arm64 (8.2-3.1) ...
1880s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested:
1880s  lsof depends on libtirpc3 (>= 1.0.2).
1880s  libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
1880s  libpython3.11-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
1880s  libnsl2:arm64 depends on libtirpc3 (>= 1.0.2).
1880s  iproute2 depends on libtirpc3 (>= 1.0.2).
1880s 
1882s (Reading database ... 
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1882s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ...
1884s Selecting previously unselected package libtirpc3t64:arm64.
1885s (Reading database ... 
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1885s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ...
1885s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
1885s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
1885s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
1886s Selecting previously unselected package libc-dev-bin.
1886s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
1886s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
1886s Selecting previously unselected package linux-libc-dev:arm64.
1887s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ...
1887s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
1894s Selecting previously unselected package libcrypt-dev:arm64.
1894s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
1894s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
1895s Selecting previously unselected package libtirpc-dev:arm64.
1895s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ...
1895s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
1896s Selecting previously unselected package libnsl-dev:arm64.
1896s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ...
1896s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
1897s Selecting previously unselected package rpcsvc-proto.
1897s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
1897s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
1898s Selecting previously unselected package libc6-dev:arm64.
1898s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ...
1898s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
1903s Selecting previously unselected package libisl23:arm64.
1903s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ...
1903s Unpacking libisl23:arm64 (0.26-3) ...
1904s Selecting previously unselected package libmpc3:arm64.
1905s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ...
1905s Unpacking libmpc3:arm64 (1.3.1-1) ...
1905s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
1905s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
1905s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
1913s Selecting previously unselected package cpp-13.
1913s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
1913s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
1913s Selecting previously unselected package cpp-aarch64-linux-gnu.
1914s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
1914s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
1914s Selecting previously unselected package cpp.
1915s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
1915s Unpacking cpp (4:13.2.0-7ubuntu1) ...
1915s Selecting previously unselected package libcc1-0:arm64.
1915s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
1915s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
1916s Selecting previously unselected package libgomp1:arm64.
1916s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
1916s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
1917s Selecting previously unselected package libitm1:arm64.
1918s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ...
1918s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
1919s Selecting previously unselected package libatomic1:arm64.
1919s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
1919s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
1920s Selecting previously unselected package libasan8:arm64.
1920s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ...
1920s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
1924s Selecting previously unselected package liblsan0:arm64.
1924s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
1924s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
1925s Selecting previously unselected package libtsan2:arm64.
1925s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
1925s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
1928s Selecting previously unselected package libubsan1:arm64.
1928s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
1928s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
1930s Selecting previously unselected package libhwasan0:arm64.
1930s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
1930s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
1931s Selecting previously unselected package libgcc-13-dev:arm64.
1931s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
1931s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
1934s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
1934s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
1934s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
1947s Selecting previously unselected package gcc-13.
1947s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
1947s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
1948s Selecting previously unselected package gcc-aarch64-linux-gnu.
1948s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
1948s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
1949s Selecting previously unselected package gcc.
1949s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
1949s Unpacking gcc (4:13.2.0-7ubuntu1) ...
1950s Selecting previously unselected package libstdc++-13-dev:arm64.
1950s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
1950s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
1961s Selecting previously unselected package g++-13-aarch64-linux-gnu.
1961s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
1961s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
1967s Selecting previously unselected package g++-13.
1967s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ...
1967s Unpacking g++-13 (13.2.0-17ubuntu2) ...
1968s Selecting previously unselected package g++-aarch64-linux-gnu.
1968s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
1968s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
1968s Selecting previously unselected package g++.
1968s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
1968s Unpacking g++ (4:13.2.0-7ubuntu1) ...
1969s Selecting previously unselected package build-essential.
1969s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ...
1969s Unpacking build-essential (12.10ubuntu1) ...
1969s Selecting previously unselected package dctrl-tools.
1969s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ...
1970s Unpacking dctrl-tools (2.24-3build2) ...
1970s Selecting previously unselected package fonts-dejavu-mono.
1970s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
1970s Unpacking fonts-dejavu-mono (2.37-8) ...
1971s Selecting previously unselected package fonts-dejavu-core.
1971s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
1972s Unpacking fonts-dejavu-core (2.37-8) ...
1973s Selecting previously unselected package fontconfig-config.
1973s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
1978s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
1979s Selecting previously unselected package libfontconfig1:arm64.
1979s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
1979s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
1979s Selecting previously unselected package fontconfig.
1980s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
1980s Unpacking fontconfig (2.15.0-1ubuntu1) ...
1980s Selecting previously unselected package libgfortran5:arm64.
1980s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
1980s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
1981s Selecting previously unselected package libgfortran-13-dev:arm64.
1981s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ...
1981s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
1982s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
1982s Preparing to unpack .../042-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
1982s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
1989s Selecting previously unselected package gfortran-13.
1989s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_arm64.deb ...
1989s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
1990s Selecting previously unselected package gfortran-aarch64-linux-gnu.
1990s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
1990s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
1990s Selecting previously unselected package gfortran.
1990s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ...
1990s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
1991s Selecting previously unselected package icu-devtools.
1991s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_arm64.deb ...
1991s Unpacking icu-devtools (74.2-1ubuntu1) ...
1991s Selecting previously unselected package libblas3:arm64.
1992s Preparing to unpack .../047-libblas3_3.12.0-3_arm64.deb ...
1992s Unpacking libblas3:arm64 (3.12.0-3) ...
1993s Selecting previously unselected package libblas-dev:arm64.
1993s Preparing to unpack .../048-libblas-dev_3.12.0-3_arm64.deb ...
1993s Unpacking libblas-dev:arm64 (3.12.0-3) ...
1994s Selecting previously unselected package libbz2-dev:arm64.
1994s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ...
1994s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
1995s Selecting previously unselected package libpixman-1-0:arm64.
1995s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_arm64.deb ...
1995s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
1995s Selecting previously unselected package libxcb-render0:arm64.
1995s Preparing to unpack .../051-libxcb-render0_1.15-1_arm64.deb ...
1995s Unpacking libxcb-render0:arm64 (1.15-1) ...
1996s Selecting previously unselected package libxcb-shm0:arm64.
1996s Preparing to unpack .../052-libxcb-shm0_1.15-1_arm64.deb ...
1996s Unpacking libxcb-shm0:arm64 (1.15-1) ...
1997s Selecting previously unselected package libxrender1:arm64.
1997s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
1997s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
1997s Selecting previously unselected package libcairo2:arm64.
1997s Preparing to unpack .../054-libcairo2_1.18.0-1_arm64.deb ...
1997s Unpacking libcairo2:arm64 (1.18.0-1) ...
1999s Selecting previously unselected package libdatrie1:arm64.
1999s Preparing to unpack .../055-libdatrie1_0.2.13-3_arm64.deb ...
1999s Unpacking libdatrie1:arm64 (0.2.13-3) ...
2000s Selecting previously unselected package libdeflate0:arm64.
2000s Preparing to unpack .../056-libdeflate0_1.19-1_arm64.deb ...
2000s Unpacking libdeflate0:arm64 (1.19-1) ...
2000s Selecting previously unselected package libgraphite2-3:arm64.
2000s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_arm64.deb ...
2000s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
2001s Selecting previously unselected package libharfbuzz0b:arm64.
2001s Preparing to unpack .../058-libharfbuzz0b_8.3.0-2_arm64.deb ...
2001s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
2002s Selecting previously unselected package x11-common.
2002s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu2_all.deb ...
2002s Unpacking x11-common (1:7.7+23ubuntu2) ...
2003s Selecting previously unselected package libice6:arm64.
2003s Preparing to unpack .../060-libice6_2%3a1.0.10-1build2_arm64.deb ...
2003s Unpacking libice6:arm64 (2:1.0.10-1build2) ...
2004s Selecting previously unselected package libicu-dev:arm64.
2004s Preparing to unpack .../061-libicu-dev_74.2-1ubuntu1_arm64.deb ...
2004s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ...
2013s Selecting previously unselected package libjpeg-turbo8:arm64.
2013s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
2013s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
2014s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
2014s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ...
2014s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
2015s Selecting previously unselected package libjpeg8:arm64.
2015s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_arm64.deb ...
2015s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
2016s Selecting previously unselected package libjpeg8-dev:arm64.
2016s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
2016s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
2016s Selecting previously unselected package libjpeg-dev:arm64.
2016s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
2016s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
2017s Selecting previously unselected package liblapack3:arm64.
2017s Preparing to unpack .../067-liblapack3_3.12.0-3_arm64.deb ...
2017s Unpacking liblapack3:arm64 (3.12.0-3) ...
2018s Selecting previously unselected package liblapack-dev:arm64.
2018s Preparing to unpack .../068-liblapack-dev_3.12.0-3_arm64.deb ...
2019s Unpacking liblapack-dev:arm64 (3.12.0-3) ...
2023s Selecting previously unselected package liblerc4:arm64.
2023s Preparing to unpack .../069-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
2023s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
2023s Selecting previously unselected package libncurses-dev:arm64.
2023s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ...
2023s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
2024s Selecting previously unselected package libthai-data.
2024s Preparing to unpack .../071-libthai-data_0.1.29-2_all.deb ...
2024s Unpacking libthai-data (0.1.29-2) ...
2025s Selecting previously unselected package libthai0:arm64.
2025s Preparing to unpack .../072-libthai0_0.1.29-2_arm64.deb ...
2025s Unpacking libthai0:arm64 (0.1.29-2) ...
2025s Selecting previously unselected package libpango-1.0-0:arm64.
2026s Preparing to unpack .../073-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
2026s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ...
2026s Selecting previously unselected package libpangoft2-1.0-0:arm64.
2026s Preparing to unpack .../074-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
2026s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
2027s Selecting previously unselected package libpangocairo-1.0-0:arm64.
2027s Preparing to unpack .../075-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
2027s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
2027s Selecting previously unselected package libpaper1:arm64.
2027s Preparing to unpack .../076-libpaper1_1.1.29_arm64.deb ...
2027s Unpacking libpaper1:arm64 (1.1.29) ...
2028s Selecting previously unselected package libpaper-utils.
2028s Preparing to unpack .../077-libpaper-utils_1.1.29_arm64.deb ...
2028s Unpacking libpaper-utils (1.1.29) ...
2028s Selecting previously unselected package libpcre2-16-0:arm64.
2029s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ...
2029s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
2029s Selecting previously unselected package libpcre2-32-0:arm64.
2029s Preparing to unpack .../079-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ...
2029s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
2030s Selecting previously unselected package libpcre2-posix3:arm64.
2030s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ...
2030s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
2030s Selecting previously unselected package libpcre2-dev:arm64.
2030s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_arm64.deb ...
2030s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ...
2032s Selecting previously unselected package libpkgconf3:arm64.
2032s Preparing to unpack .../082-libpkgconf3_1.8.1-2_arm64.deb ...
2032s Unpacking libpkgconf3:arm64 (1.8.1-2) ...
2032s Selecting previously unselected package zlib1g-dev:arm64.
2032s Preparing to unpack .../083-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ...
2032s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
2033s Selecting previously unselected package libpng-dev:arm64.
2034s Preparing to unpack .../084-libpng-dev_1.6.43-3_arm64.deb ...
2034s Unpacking libpng-dev:arm64 (1.6.43-3) ...
2034s Selecting previously unselected package libreadline-dev:arm64.
2034s Preparing to unpack .../085-libreadline-dev_8.2-3.1_arm64.deb ...
2034s Unpacking libreadline-dev:arm64 (8.2-3.1) ...
2035s Selecting previously unselected package libsharpyuv0:arm64.
2035s Preparing to unpack .../086-libsharpyuv0_1.3.2-0.4_arm64.deb ...
2035s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
2036s Selecting previously unselected package libsm6:arm64.
2036s Preparing to unpack .../087-libsm6_2%3a1.2.3-1build2_arm64.deb ...
2036s Unpacking libsm6:arm64 (2:1.2.3-1build2) ...
2036s Selecting previously unselected package libtcl8.6:arm64.
2036s Preparing to unpack .../088-libtcl8.6_8.6.13+dfsg-2_arm64.deb ...
2036s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ...
2039s Selecting previously unselected package libjbig0:arm64.
2040s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
2040s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
2040s Selecting previously unselected package libwebp7:arm64.
2040s Preparing to unpack .../090-libwebp7_1.3.2-0.4_arm64.deb ...
2040s Unpacking libwebp7:arm64 (1.3.2-0.4) ...
2041s Selecting previously unselected package libtiff6:arm64.
2041s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
2041s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
2041s Selecting previously unselected package libxft2:arm64.
2041s Preparing to unpack .../092-libxft2_2.3.6-1_arm64.deb ...
2041s Unpacking libxft2:arm64 (2.3.6-1) ...
2042s Selecting previously unselected package libxss1:arm64.
2042s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_arm64.deb ...
2042s Unpacking libxss1:arm64 (1:1.2.3-1build2) ...
2043s Selecting previously unselected package libtk8.6:arm64.
2043s Preparing to unpack .../094-libtk8.6_8.6.13-2_arm64.deb ...
2043s Unpacking libtk8.6:arm64 (8.6.13-2) ...
2045s Selecting previously unselected package libxt6t64:arm64.
2045s Preparing to unpack .../095-libxt6t64_1%3a1.2.1-1.2_arm64.deb ...
2045s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ...
2045s Selecting previously unselected package pkgconf-bin.
2045s Preparing to unpack .../096-pkgconf-bin_1.8.1-2_arm64.deb ...
2045s Unpacking pkgconf-bin (1.8.1-2) ...
2046s Selecting previously unselected package pkgconf:arm64.
2046s Preparing to unpack .../097-pkgconf_1.8.1-2_arm64.deb ...
2046s Unpacking pkgconf:arm64 (1.8.1-2) ...
2047s Selecting previously unselected package pkg-config:arm64.
2047s Preparing to unpack .../098-pkg-config_1.8.1-2_arm64.deb ...
2047s Unpacking pkg-config:arm64 (1.8.1-2) ...
2048s Selecting previously unselected package zip.
2048s Preparing to unpack .../099-zip_3.0-13_arm64.deb ...
2048s Unpacking zip (3.0-13) ...
2049s Selecting previously unselected package unzip.
2049s Preparing to unpack .../100-unzip_6.0-28ubuntu3_arm64.deb ...
2049s Unpacking unzip (6.0-28ubuntu3) ...
2050s Selecting previously unselected package xdg-utils.
2050s Preparing to unpack .../101-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
2050s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
2051s Selecting previously unselected package r-base-core.
2051s Preparing to unpack .../102-r-base-core_4.3.3-2build1_arm64.deb ...
2051s Unpacking r-base-core (4.3.3-2build1) ...
2062s Selecting previously unselected package liblzma-dev:arm64.
2062s Preparing to unpack .../103-liblzma-dev_5.4.5-0.3_arm64.deb ...
2062s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ...
2063s Selecting previously unselected package r-base-dev.
2063s Preparing to unpack .../104-r-base-dev_4.3.3-2build1_all.deb ...
2063s Unpacking r-base-dev (4.3.3-2build1) ...
2063s Selecting previously unselected package pkg-r-autopkgtest.
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2063s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
2064s Selecting previously unselected package r-bioc-biocgenerics.
2064s Preparing to unpack .../106-r-bioc-biocgenerics_0.48.1-2_all.deb ...
2064s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
2064s Selecting previously unselected package r-bioc-biocversion.
2064s Preparing to unpack .../107-r-bioc-biocversion_3.18.1-1_all.deb ...
2064s Unpacking r-bioc-biocversion (3.18.1-1) ...
2065s Selecting previously unselected package autopkgtest-satdep.
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2065s Unpacking autopkgtest-satdep (0) ...
2066s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
2066s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
2066s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
2066s Setting up libpaper1:arm64 (1.1.29) ...
2070s 
2070s Creating config file /etc/papersize with new version
2071s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
2071s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
2071s Setting up libdatrie1:arm64 (0.2.13-3) ...
2071s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
2071s Setting up libxcb-render0:arm64 (1.15-1) ...
2071s Setting up unzip (6.0-28ubuntu3) ...
2071s Setting up x11-common (1:7.7+23ubuntu2) ...
2084s Setting up libpsl5t64:arm64 (0.21.2-1.1) ...
2084s Setting up libdeflate0:arm64 (1.19-1) ...
2084s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ...
2084s Setting up libxcb-shm0:arm64 (1.15-1) ...
2084s Setting up libpaper-utils (1.1.29) ...
2084s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
2084s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
2084s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
2084s Setting up zip (3.0-13) ...
2084s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
2084s Setting up libblas3:arm64 (3.12.0-3) ...
2084s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
2084s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
2084s Setting up libpkgconf3:arm64 (1.8.1-2) ...
2084s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
2084s Setting up fonts-dejavu-mono (2.37-8) ...
2084s Setting up libpng16-16t64:arm64 (1.6.43-3) ...
2084s Setting up libmpc3:arm64 (1.3.1-1) ...
2085s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ...
2085s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ...
2085s Setting up icu-devtools (74.2-1ubuntu1) ...
2085s Setting up fonts-dejavu-core (2.37-8) ...
2086s Setting up pkgconf-bin (1.8.1-2) ...
2086s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
2086s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
2087s Setting up libwebp7:arm64 (1.3.2-0.4) ...
2087s Setting up libreadline8t64:arm64 (8.2-3.1) ...
2087s Setting up liblzma-dev:arm64 (5.4.5-0.3) ...
2087s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ...
2088s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
2088s Setting up libnsl-dev:arm64 (1.3.0-3) ...
2088s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ...
2088s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ...
2089s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ...
2089s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
2089s Setting up libthai-data (0.1.29-2) ...
2089s Setting up libxss1:arm64 (1:1.2.3-1build2) ...
2089s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ...
2089s Setting up libisl23:arm64 (0.26-3) ...
2090s Setting up libc-dev-bin (2.39-0ubuntu2) ...
2090s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
2090s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
2090s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ...
2091s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ...
2091s Setting up libblas-dev:arm64 (3.12.0-3) ...
2091s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
2091s Setting up dctrl-tools (2.24-3build2) ...
2092s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ...
2092s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
2092s Setting up libice6:arm64 (2:1.0.10-1build2) ...
2092s Setting up liblapack3:arm64 (3.12.0-3) ...
2092s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
2092s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
2092s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
2092s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
2099s Setting up pkgconf:arm64 (1.8.1-2) ...
2099s Setting up libthai0:arm64 (0.1.29-2) ...
2099s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
2099s Setting up liblapack-dev:arm64 (3.12.0-3) ...
2099s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
2100s Setting up pkg-config:arm64 (1.8.1-2) ...
2100s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
2100s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
2100s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ...
2100s Setting up curl (8.5.0-2ubuntu7) ...
2100s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
2100s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
2100s Setting up libsm6:arm64 (2:1.2.3-1build2) ...
2100s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ...
2100s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
2100s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
2100s Setting up fontconfig (2.15.0-1ubuntu1) ...
2103s Regenerating fonts cache... done.
2103s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
2103s Setting up libxft2:arm64 (2.3.6-1) ...
2103s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
2103s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ...
2103s Setting up cpp-13 (13.2.0-17ubuntu2) ...
2103s Setting up libtk8.6:arm64 (8.6.13-2) ...
2103s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
2103s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
2103s Setting up libreadline-dev:arm64 (8.2-3.1) ...
2103s Setting up libcairo2:arm64 (1.18.0-1) ...
2103s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ...
2103s Setting up gcc-13 (13.2.0-17ubuntu2) ...
2103s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
2104s Setting up cpp (4:13.2.0-7ubuntu1) ...
2104s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
2104s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
2104s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
2104s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
2104s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
2104s Setting up g++-13 (13.2.0-17ubuntu2) ...
2104s Setting up libpng-dev:arm64 (1.6.43-3) ...
2104s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
2104s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
2104s Setting up gcc (4:13.2.0-7ubuntu1) ...
2105s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
2105s Setting up r-base-core (4.3.3-2build1) ...
2110s 
2110s Creating config file /etc/R/Renviron with new version
2112s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
2112s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
2112s Setting up r-bioc-biocgenerics (0.48.1-2) ...
2112s Setting up gfortran (4:13.2.0-7ubuntu1) ...
2112s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
2112s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
2112s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
2112s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
2112s Setting up r-bioc-biocversion (3.18.1-1) ...
2112s Setting up g++ (4:13.2.0-7ubuntu1) ...
2112s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
2112s Setting up build-essential (12.10ubuntu1) ...
2112s Setting up r-base-dev (4.3.3-2build1) ...
2113s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
2113s Setting up autopkgtest-satdep (0) ...
2113s Processing triggers for man-db (2.12.0-3) ...
2129s Processing triggers for install-info (7.1-3) ...
2132s Processing triggers for libc-bin (2.39-0ubuntu2) ...
2235s (Reading database ... 81491 files and directories currently installed.)
2235s Removing autopkgtest-satdep (0) ...
2240s autopkgtest [18:00:23]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
2240s autopkgtest [18:00:23]: test pkg-r-autopkgtest: [-----------------------
2242s Test: Try to load the R library BiocVersion
2244s 
2244s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
2244s Copyright (C) 2024 The R Foundation for Statistical Computing
2244s Platform: aarch64-unknown-linux-gnu (64-bit)
2244s 
2244s R is free software and comes with ABSOLUTELY NO WARRANTY.
2244s You are welcome to redistribute it under certain conditions.
2244s Type 'license()' or 'licence()' for distribution details.
2244s 
2244s R is a collaborative project with many contributors.
2244s Type 'contributors()' for more information and
2244s 'citation()' on how to cite R or R packages in publications.
2244s 
2244s Type 'demo()' for some demos, 'help()' for on-line help, or
2244s 'help.start()' for an HTML browser interface to help.
2244s Type 'q()' to quit R.
2244s 
2247s > library('BiocVersion')
2247s > 
2247s > 
2248s Other tests are currently unsupported!
2248s They will be progressively added.
2249s autopkgtest [18:00:32]: test pkg-r-autopkgtest: -----------------------]
2251s pkg-r-autopkgtest    PASS
2251s autopkgtest [18:00:34]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
2254s autopkgtest [18:00:37]: @@@@@@@@@@@@@@@@@@@@ summary
2254s pkg-r-autopkgtest    PASS
2293s Creating nova instance adt-noble-arm64-r-bioc-biocversion-20240316-172303-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...