0s autopkgtest [17:22:11]: starting date and time: 2024-03-16 17:22:11+0000
  0s autopkgtest [17:22:11]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [17:22:11]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7gvuvki2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-biocgenerics --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-7.secgroup --name adt-noble-arm64-r-bioc-biocgenerics-20240316-172211-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
123s autopkgtest [17:24:14]: testbed dpkg architecture: arm64
123s autopkgtest [17:24:14]: testbed apt version: 2.7.12
123s autopkgtest [17:24:14]: @@@@@@@@@@@@@@@@@@@@ test bed setup
123s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
124s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB]
124s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
124s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB]
124s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
124s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
124s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
124s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
124s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
124s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB]
124s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
124s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB]
124s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
126s Fetched 9060 kB in 2s (4738 kB/s)
127s Reading package lists...
129s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s Calculating upgrade...
131s The following packages will be REMOVED:
131s   libglib2.0-0 libssl3
131s The following NEW packages will be installed:
131s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
131s The following packages have been kept back:
131s   curl
131s The following packages will be upgraded:
131s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
131s   ubuntu-minimal ubuntu-standard
131s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
131s Need to get 4613 kB of archives.
131s After this operation, 211 kB of additional disk space will be used.
131s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
131s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
131s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
131s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
132s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
132s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
132s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
132s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
132s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
132s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
132s Fetched 4613 kB in 1s (5857 kB/s)
132s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
132s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
132s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
133s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
133s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
133s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
133s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
133s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
133s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
133s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
133s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
133s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
133s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
133s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
133s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
133s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
133s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
133s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
133s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
133s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
133s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
133s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
133s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
133s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  fwupd depends on libglib2.0-0 (>= 2.79.0).
133s  bolt depends on libglib2.0-0 (>= 2.56.0).
133s 
133s (Reading database ... 
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133s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
133s Selecting previously unselected package libglib2.0-0t64:arm64.
133s (Reading database ... 
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(Reading database ... 74733 files and directories currently installed.)
133s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
133s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
133s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
133s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
133s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
133s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
133s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
133s  wget depends on libssl3 (>= 3.0.0).
133s  u-boot-tools depends on libssl3 (>= 3.0.0).
133s  tnftp depends on libssl3 (>= 3.0.0).
133s  tcpdump depends on libssl3 (>= 3.0.0).
133s  systemd-resolved depends on libssl3 (>= 3.0.0).
133s  systemd depends on libssl3 (>= 3.0.0).
133s  sudo depends on libssl3 (>= 3.0.0).
133s  sbsigntool depends on libssl3 (>= 3.0.0).
133s  rsync depends on libssl3 (>= 3.0.0).
133s  python3-cryptography depends on libssl3 (>= 3.0.0).
133s  openssh-server depends on libssl3 (>= 3.0.10).
133s  openssh-client depends on libssl3 (>= 3.0.10).
133s  mtd-utils depends on libssl3 (>= 3.0.0).
133s  mokutil depends on libssl3 (>= 3.0.0).
133s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
133s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
133s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
133s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
133s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
133s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
133s  libnvme1 depends on libssl3 (>= 3.0.0).
133s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
133s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
133s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
133s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
133s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
133s  kmod depends on libssl3 (>= 3.0.0).
133s  dhcpcd-base depends on libssl3 (>= 3.0.0).
133s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
133s 
133s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
133s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
133s Selecting previously unselected package libssl3t64:arm64.
133s (Reading database ... 
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(Reading database ... 74747 files and directories currently installed.)
133s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
133s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
133s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
133s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
133s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ...
133s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
133s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ...
133s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
133s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ...
133s Unpacking ubuntu-minimal (1.536) over (1.535) ...
133s Selecting previously unselected package xdg-user-dirs.
133s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ...
133s Unpacking xdg-user-dirs (0.18-1) ...
134s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ...
134s Unpacking ubuntu-standard (1.536) over (1.535) ...
134s Setting up ubuntu-minimal (1.536) ...
134s Setting up xdg-user-dirs (0.18-1) ...
134s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
134s Setting up libtirpc-common (1.3.4+ds-1.1) ...
134s Setting up ubuntu-standard (1.536) ...
134s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
134s No schema files found: doing nothing.
134s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
134s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
134s Setting up openssl (3.0.13-0ubuntu1) ...
134s Setting up readline-common (8.2-3.1) ...
134s Processing triggers for man-db (2.12.0-3) ...
134s Processing triggers for install-info (7.1-3) ...
135s Processing triggers for libc-bin (2.39-0ubuntu2) ...
135s Reading package lists...
135s Building dependency tree...
135s Reading state information...
136s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
137s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
137s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
137s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
137s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
138s Reading package lists...
138s Reading package lists...
138s Building dependency tree...
138s Reading state information...
139s Calculating upgrade...
139s The following packages have been kept back:
139s   curl
140s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
140s Reading package lists...
140s Building dependency tree...
140s Reading state information...
141s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
144s autopkgtest [17:24:35]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
144s autopkgtest [17:24:35]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biocgenerics
146s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocgenerics 0.48.1-2 (dsc) [2117 B]
146s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocgenerics 0.48.1-2 (tar) [49.5 kB]
146s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocgenerics 0.48.1-2 (diff) [6756 B]
146s gpgv: Signature made Thu Dec 14 06:16:25 2023 UTC
146s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
146s gpgv:                issuer "tille@debian.org"
146s gpgv: Can't check signature: No public key
146s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biocgenerics_0.48.1-2.dsc: no acceptable signature found
146s autopkgtest [17:24:37]: testing package r-bioc-biocgenerics version 0.48.1-2
146s autopkgtest [17:24:37]: build not needed
147s autopkgtest [17:24:38]: test pkg-r-autopkgtest: preparing testbed
149s Reading package lists...
149s Building dependency tree...
149s Reading state information...
150s Starting pkgProblemResolver with broken count: 0
150s Starting 2 pkgProblemResolver with broken count: 0
150s Done
150s The following additional packages will be installed:
150s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
150s   curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core
150s   fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu
150s   gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran
150s   gfortran-13 gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu
150s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libboost-dev
150s   libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
150s   libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
150s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
150s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
150s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
150s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
150s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
150s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
150s   libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64
150s   libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev
150s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6
150s   libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1
150s   libxss1 libxt6t64 linux-libc-dev littler pkg-config pkg-r-autopkgtest
150s   pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-affy r-bioc-affyio
150s   r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics
150s   r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2
150s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
150s   r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-preprocesscore
150s   r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors
150s   r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector
150s   r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-biocmanager
150s   r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli
150s   r-cran-codetools r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl
150s   r-cran-dbi r-cran-fansi r-cran-farver r-cran-fastmap r-cran-formatr
150s   r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue
150s   r-cran-gtable r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-labeling
150s   r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit
150s   r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
150s   r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl
150s   r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png
150s   r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl
150s   r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-scales r-cran-snow
150s   r-cran-sys r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite
150s   r-cran-withr r-cran-xml r-cran-xtable rpcsvc-proto unzip x11-common
150s   xdg-utils zip zlib1g-dev
150s Suggested packages:
150s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
150s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
150s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
150s   liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev
150s   libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
150s   libboost-contract1.83-dev libboost-coroutine1.83-dev
150s   libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
150s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
150s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
150s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
150s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
150s   libboost-numpy1.83-dev libboost-program-options1.83-dev
150s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
150s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
150s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
150s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
150s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
150s   glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
150s   tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
150s   texlive-base texlive-latex-base texlive-plain-generic
150s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
150s   texlive-latex-recommended texlive-latex-extra texinfo r-bioc-genefilter
150s   r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-cran-knitr
150s   r-bioc-all r-cran-foreach r-cran-bbmisc r-cran-doparallel
150s   r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread
150s   r-cran-batchtools r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures
150s   r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats r-cran-rmarkdown
150s   r-cran-testthat r-cran-pheatmap r-bioc-tximport r-bioc-tximeta
150s   r-bioc-tximportdata r-cran-readr r-cran-pbapply r-bioc-glmgampoi
150s   r-cran-r.utils r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub
150s   r-bioc-dexseq r-bioc-edger r-cran-digest r-cran-markdown
150s   r-bioc-sparsematrixstats r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr
150s   r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny
150s   r-cran-shinyjs r-cran-dplyr r-cran-jpeg r-cran-viridis r-cran-rstudioapi
150s   r-cran-rmysql r-cran-magick r-cran-sf r-cran-getopt r-cran-interp r-cran-gam
150s   r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-stringi
150s   r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi
150s   r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr
150s   r-cran-evaluate r-cran-here r-cran-hms r-cran-htmltools r-cran-pkgbuild
150s   r-cran-pkgload r-cran-purrr r-cran-tidyr r-cran-plm r-cran-zoo
150s Recommended packages:
150s   bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended
150s   r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes
150s   r-cran-rmarkdown r-cran-knitr r-cran-callr r-cran-covr r-cran-digest
150s   r-cran-htmltools r-cran-htmlwidgets r-cran-mockery r-cran-processx r-cran-ps
150s   r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-brio
150s   r-cran-decor r-cran-desc r-cran-lobstr r-cran-progress r-cran-spelling
150s   r-cran-later r-cran-httpuv r-cran-webutils r-cran-unitizer r-cran-testit
150s   r-cran-survival r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-mapproj
150s   r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg
150s   r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-waldo
150s   r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-lintr r-cran-tidyverse
150s   r-cran-base64enc r-cran-markdown r-cran-r.devices r-cran-sodium
150s   r-cran-lubridate r-cran-fs r-cran-usethis r-cran-dbitest r-cran-gert
150s   r-cran-gh r-cran-hms r-cran-rvest r-cran-dichromat r-cran-stringi
150s   r-cran-data.table r-cran-mockr r-cran-formattable r-cran-generics
150s   r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl
150s   libx11-protocol-perl x11-utils x11-xserver-utils
150s The following packages will be REMOVED:
150s   libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3
150s The following NEW packages will be installed:
150s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
150s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
150s   fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu
150s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
150s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
150s   gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev
150s   libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev
150s   libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0
150s   libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1
150s   libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1
150s   libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
150s   liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
150s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
150s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
150s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
150s   libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0
150s   libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6
150s   libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7
150s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
150s   linux-libc-dev littler pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin
150s   r-base-core r-base-dev r-bioc-affy r-bioc-affyio r-bioc-annotate
150s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
150s   r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-genomeinfodb
150s   r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest
150s   r-bioc-matrixgenerics r-bioc-preprocesscore r-bioc-rhtslib r-bioc-rsamtools
150s   r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
150s   r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
150s   r-cran-askpass r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64
150s   r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools
150s   r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi
150s   r-cran-fansi r-cran-farver r-cran-fastmap r-cran-formatr
150s   r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue
150s   r-cran-gtable r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-labeling
150s   r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit
150s   r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
150s   r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl
150s   r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png
150s   r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl
150s   r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-scales r-cran-snow
150s   r-cran-sys r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite
150s   r-cran-withr r-cran-xml r-cran-xtable rpcsvc-proto unzip x11-common
150s   xdg-utils zip zlib1g-dev
150s The following packages will be upgraded:
150s   curl
151s 1 upgraded, 206 newly installed, 5 to remove and 0 not upgraded.
151s Need to get 249 MB/249 MB of archives.
151s After this operation, 752 MB of additional disk space will be used.
151s Get:1 /tmp/autopkgtest.cdM8q0/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [812 B]
151s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB]
151s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB]
151s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB]
151s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB]
151s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB]
151s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB]
151s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
151s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
151s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
151s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB]
151s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
151s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
151s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
151s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
151s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
151s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
152s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
152s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
152s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
152s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
152s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
152s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
152s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
152s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
152s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
152s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
152s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
152s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
152s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
152s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
152s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
152s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
152s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
152s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
152s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
153s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
153s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
153s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
153s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
153s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
153s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
153s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
153s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
153s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
153s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
153s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
153s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
153s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
153s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
153s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
153s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
153s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
153s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
153s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
153s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB]
153s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B]
153s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
153s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
153s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
153s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
153s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
153s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
153s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
153s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
153s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
153s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
153s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
153s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
153s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
154s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
154s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
154s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
154s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
154s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
154s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
154s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
154s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
154s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
154s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
154s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
154s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
154s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
154s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
154s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
154s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
154s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
154s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
154s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
154s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
154s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
154s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
154s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB]
154s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB]
154s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
154s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
154s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
154s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
154s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
154s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
154s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
154s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
154s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
154s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB]
154s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
154s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
154s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
154s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB]
155s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB]
155s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B]
155s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
155s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
155s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
155s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
155s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B]
155s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
155s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
155s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB]
156s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
156s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affyio arm64 1.72.0-1 [87.1 kB]
156s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
156s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-preprocesscore arm64 1.64.0+ds-1 [147 kB]
156s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affy arm64 1.80.0-1 [1350 kB]
156s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB]
156s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB]
156s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB]
156s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB]
156s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB]
156s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB]
156s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB]
156s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB]
156s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
156s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
156s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB]
156s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB]
156s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB]
156s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
156s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
156s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
156s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB]
156s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB]
156s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB]
156s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB]
156s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB]
156s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB]
156s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB]
156s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB]
156s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
156s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
156s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB]
156s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB]
156s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB]
156s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB]
156s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
157s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
157s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB]
157s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB]
157s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
157s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
157s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB]
158s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
158s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB]
158s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB]
158s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
158s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
158s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
158s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
158s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB]
158s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B]
158s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB]
158s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB]
158s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB]
158s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB]
158s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
158s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB]
158s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB]
158s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB]
158s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB]
158s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB]
158s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
158s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB]
158s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
158s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB]
158s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB]
158s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB]
158s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB]
158s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB]
158s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB]
158s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB]
158s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB]
158s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
158s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB]
159s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB]
159s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
159s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
159s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
159s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
159s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB]
159s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB]
159s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB]
159s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
159s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB]
159s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB]
159s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq2 arm64 1.42.0+dfsg-1 [1218 kB]
159s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB]
159s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB]
160s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB]
161s Preconfiguring packages ...
161s Fetched 249 MB in 9s (27.4 MB/s)
161s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested:
161s  wget depends on libpsl5 (>= 0.16.0).
161s  libcurl4:arm64 depends on libpsl5 (>= 0.16.0).
161s  libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0).
161s 
161s (Reading database ... 
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(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74774 files and directories currently installed.)
161s Removing libpsl5:arm64 (0.21.2-1build1) ...
161s Selecting previously unselected package libpsl5t64:arm64.
161s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74769 files and directories currently installed.)
161s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ...
161s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ...
161s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ...
161s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
161s (Reading database ... 
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(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74775 files and directories currently installed.)
161s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ...
161s Selecting previously unselected package libcurl4t64:arm64.
161s (Reading database ... 
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(Reading database ... 10%
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(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74770 files and directories currently installed.)
161s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ...
161s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
161s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested:
161s  libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2).
161s  libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1).
161s 
161s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74776 files and directories currently installed.)
161s Removing libpng16-16:arm64 (1.6.43-1) ...
161s Selecting previously unselected package libpng16-16t64:arm64.
161s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74766 files and directories currently installed.)
161s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ...
161s Unpacking libpng16-16t64:arm64 (1.6.43-3) ...
161s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested:
161s  parted depends on libreadline8 (>= 6.0).
161s  libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
161s  gpgsm depends on libreadline8 (>= 6.0).
161s  gpgconf depends on libreadline8 (>= 6.0).
161s  gpg depends on libreadline8 (>= 6.0).
161s  gawk depends on libreadline8 (>= 6.0).
161s  fdisk depends on libreadline8 (>= 6.0).
161s 
161s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74777 files and directories currently installed.)
161s Removing libreadline8:arm64 (8.2-3) ...
162s Selecting previously unselected package libreadline8t64:arm64.
162s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74765 files and directories currently installed.)
162s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ...
162s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
162s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
162s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
162s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
162s Unpacking libreadline8t64:arm64 (8.2-3.1) ...
162s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested:
162s  lsof depends on libtirpc3 (>= 1.0.2).
162s  libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
162s  libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2).
162s  libnsl2:arm64 depends on libtirpc3 (>= 1.0.2).
162s  iproute2 depends on libtirpc3 (>= 1.0.2).
162s 
162s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74785 files and directories currently installed.)
162s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ...
162s Selecting previously unselected package libtirpc3t64:arm64.
162s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74779 files and directories currently installed.)
162s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ...
162s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
162s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
162s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
162s Selecting previously unselected package libc-dev-bin.
162s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
162s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
162s Selecting previously unselected package linux-libc-dev:arm64.
162s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ...
162s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
162s Selecting previously unselected package libcrypt-dev:arm64.
162s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
162s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
162s Selecting previously unselected package libtirpc-dev:arm64.
162s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ...
162s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
163s Selecting previously unselected package libnsl-dev:arm64.
163s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ...
163s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
163s Selecting previously unselected package rpcsvc-proto.
163s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
163s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
163s Selecting previously unselected package libc6-dev:arm64.
163s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ...
163s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
163s Selecting previously unselected package libisl23:arm64.
163s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ...
163s Unpacking libisl23:arm64 (0.26-3) ...
163s Selecting previously unselected package libmpc3:arm64.
163s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ...
163s Unpacking libmpc3:arm64 (1.3.1-1) ...
163s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
163s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
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163s Selecting previously unselected package cpp-13.
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163s Selecting previously unselected package cpp-aarch64-linux-gnu.
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163s Selecting previously unselected package cpp.
163s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
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163s Selecting previously unselected package libcc1-0:arm64.
163s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
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163s Selecting previously unselected package libgomp1:arm64.
163s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
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163s Selecting previously unselected package libitm1:arm64.
164s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ...
164s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
164s Selecting previously unselected package libatomic1:arm64.
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164s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
164s Selecting previously unselected package libasan8:arm64.
164s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ...
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164s Selecting previously unselected package liblsan0:arm64.
164s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
164s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
164s Selecting previously unselected package libtsan2:arm64.
164s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
164s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
164s Selecting previously unselected package libubsan1:arm64.
164s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
164s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
164s Selecting previously unselected package libhwasan0:arm64.
164s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
164s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
164s Selecting previously unselected package libgcc-13-dev:arm64.
164s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
164s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
165s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
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165s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
165s Selecting previously unselected package gcc-13.
165s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
165s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
165s Selecting previously unselected package gcc-aarch64-linux-gnu.
165s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
165s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
165s Selecting previously unselected package gcc.
165s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
165s Unpacking gcc (4:13.2.0-7ubuntu1) ...
165s Selecting previously unselected package libstdc++-13-dev:arm64.
165s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
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165s Selecting previously unselected package g++-13-aarch64-linux-gnu.
165s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
165s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
166s Selecting previously unselected package g++-13.
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166s Selecting previously unselected package g++-aarch64-linux-gnu.
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166s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
166s Selecting previously unselected package g++.
166s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
166s Unpacking g++ (4:13.2.0-7ubuntu1) ...
166s Selecting previously unselected package build-essential.
166s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ...
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166s Selecting previously unselected package dctrl-tools.
166s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ...
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166s Selecting previously unselected package fonts-dejavu-mono.
166s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
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166s Selecting previously unselected package fonts-dejavu-core.
166s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
166s Unpacking fonts-dejavu-core (2.37-8) ...
166s Selecting previously unselected package fontconfig-config.
166s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
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166s Selecting previously unselected package libfontconfig1:arm64.
166s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
166s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
166s Selecting previously unselected package fontconfig.
166s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
166s Unpacking fontconfig (2.15.0-1ubuntu1) ...
166s Selecting previously unselected package libgfortran5:arm64.
166s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
166s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
166s Selecting previously unselected package libgfortran-13-dev:arm64.
166s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ...
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166s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
166s Preparing to unpack .../042-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
166s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
167s Selecting previously unselected package gfortran-13.
167s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_arm64.deb ...
167s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
167s Selecting previously unselected package gfortran-aarch64-linux-gnu.
167s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
167s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
167s Selecting previously unselected package gfortran.
167s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ...
167s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
167s Selecting previously unselected package icu-devtools.
167s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_arm64.deb ...
167s Unpacking icu-devtools (74.2-1ubuntu1) ...
167s Selecting previously unselected package libblas3:arm64.
167s Preparing to unpack .../047-libblas3_3.12.0-3_arm64.deb ...
167s Unpacking libblas3:arm64 (3.12.0-3) ...
167s Selecting previously unselected package libblas-dev:arm64.
167s Preparing to unpack .../048-libblas-dev_3.12.0-3_arm64.deb ...
167s Unpacking libblas-dev:arm64 (3.12.0-3) ...
167s Selecting previously unselected package libboost1.83-dev:arm64.
167s Preparing to unpack .../049-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ...
167s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ...
169s Selecting previously unselected package libboost-dev:arm64.
169s Preparing to unpack .../050-libboost-dev_1.83.0.1ubuntu2_arm64.deb ...
169s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ...
169s Selecting previously unselected package libbz2-dev:arm64.
169s Preparing to unpack .../051-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ...
169s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
169s Selecting previously unselected package libpixman-1-0:arm64.
169s Preparing to unpack .../052-libpixman-1-0_0.42.2-1_arm64.deb ...
169s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
169s Selecting previously unselected package libxcb-render0:arm64.
169s Preparing to unpack .../053-libxcb-render0_1.15-1_arm64.deb ...
169s Unpacking libxcb-render0:arm64 (1.15-1) ...
169s Selecting previously unselected package libxcb-shm0:arm64.
169s Preparing to unpack .../054-libxcb-shm0_1.15-1_arm64.deb ...
169s Unpacking libxcb-shm0:arm64 (1.15-1) ...
169s Selecting previously unselected package libxrender1:arm64.
169s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
169s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
169s Selecting previously unselected package libcairo2:arm64.
169s Preparing to unpack .../056-libcairo2_1.18.0-1_arm64.deb ...
169s Unpacking libcairo2:arm64 (1.18.0-1) ...
169s Selecting previously unselected package libdatrie1:arm64.
169s Preparing to unpack .../057-libdatrie1_0.2.13-3_arm64.deb ...
169s Unpacking libdatrie1:arm64 (0.2.13-3) ...
169s Selecting previously unselected package libdeflate0:arm64.
169s Preparing to unpack .../058-libdeflate0_1.19-1_arm64.deb ...
169s Unpacking libdeflate0:arm64 (1.19-1) ...
169s Selecting previously unselected package libgraphite2-3:arm64.
169s Preparing to unpack .../059-libgraphite2-3_1.3.14-2_arm64.deb ...
169s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
169s Selecting previously unselected package libharfbuzz0b:arm64.
169s Preparing to unpack .../060-libharfbuzz0b_8.3.0-2_arm64.deb ...
169s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
169s Selecting previously unselected package x11-common.
169s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu2_all.deb ...
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169s Selecting previously unselected package libice6:arm64.
169s Preparing to unpack .../062-libice6_2%3a1.0.10-1build2_arm64.deb ...
169s Unpacking libice6:arm64 (2:1.0.10-1build2) ...
169s Selecting previously unselected package libicu-dev:arm64.
169s Preparing to unpack .../063-libicu-dev_74.2-1ubuntu1_arm64.deb ...
169s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ...
169s Selecting previously unselected package libjpeg-turbo8:arm64.
169s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
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169s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
169s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ...
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170s Selecting previously unselected package libjpeg8:arm64.
170s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ...
170s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
170s Selecting previously unselected package libjpeg8-dev:arm64.
170s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
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170s Selecting previously unselected package libjpeg-dev:arm64.
170s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
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170s Selecting previously unselected package liblapack3:arm64.
170s Preparing to unpack .../069-liblapack3_3.12.0-3_arm64.deb ...
170s Unpacking liblapack3:arm64 (3.12.0-3) ...
170s Selecting previously unselected package liblapack-dev:arm64.
170s Preparing to unpack .../070-liblapack-dev_3.12.0-3_arm64.deb ...
170s Unpacking liblapack-dev:arm64 (3.12.0-3) ...
170s Selecting previously unselected package liblerc4:arm64.
170s Preparing to unpack .../071-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
170s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
170s Selecting previously unselected package libncurses-dev:arm64.
170s Preparing to unpack .../072-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ...
170s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
170s Selecting previously unselected package libthai-data.
170s Preparing to unpack .../073-libthai-data_0.1.29-2_all.deb ...
170s Unpacking libthai-data (0.1.29-2) ...
170s Selecting previously unselected package libthai0:arm64.
170s Preparing to unpack .../074-libthai0_0.1.29-2_arm64.deb ...
170s Unpacking libthai0:arm64 (0.1.29-2) ...
170s Selecting previously unselected package libpango-1.0-0:arm64.
170s Preparing to unpack .../075-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
170s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ...
170s Selecting previously unselected package libpangoft2-1.0-0:arm64.
170s Preparing to unpack .../076-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
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170s Selecting previously unselected package libpangocairo-1.0-0:arm64.
170s Preparing to unpack .../077-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
170s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
170s Selecting previously unselected package libpaper1:arm64.
170s Preparing to unpack .../078-libpaper1_1.1.29_arm64.deb ...
170s Unpacking libpaper1:arm64 (1.1.29) ...
170s Selecting previously unselected package libpaper-utils.
170s Preparing to unpack .../079-libpaper-utils_1.1.29_arm64.deb ...
170s Unpacking libpaper-utils (1.1.29) ...
170s Selecting previously unselected package libpcre2-16-0:arm64.
170s Preparing to unpack .../080-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ...
170s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
171s Selecting previously unselected package libpcre2-32-0:arm64.
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171s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
171s Selecting previously unselected package libpcre2-posix3:arm64.
171s Preparing to unpack .../082-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ...
171s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
171s Selecting previously unselected package libpcre2-dev:arm64.
171s Preparing to unpack .../083-libpcre2-dev_10.42-4ubuntu1_arm64.deb ...
171s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ...
171s Selecting previously unselected package libpkgconf3:arm64.
171s Preparing to unpack .../084-libpkgconf3_1.8.1-2_arm64.deb ...
171s Unpacking libpkgconf3:arm64 (1.8.1-2) ...
171s Selecting previously unselected package zlib1g-dev:arm64.
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171s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
171s Selecting previously unselected package libpng-dev:arm64.
171s Preparing to unpack .../086-libpng-dev_1.6.43-3_arm64.deb ...
171s Unpacking libpng-dev:arm64 (1.6.43-3) ...
171s Selecting previously unselected package libreadline-dev:arm64.
171s Preparing to unpack .../087-libreadline-dev_8.2-3.1_arm64.deb ...
171s Unpacking libreadline-dev:arm64 (8.2-3.1) ...
171s Selecting previously unselected package libsharpyuv0:arm64.
171s Preparing to unpack .../088-libsharpyuv0_1.3.2-0.4_arm64.deb ...
171s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
171s Selecting previously unselected package libsm6:arm64.
171s Preparing to unpack .../089-libsm6_2%3a1.2.3-1build2_arm64.deb ...
171s Unpacking libsm6:arm64 (2:1.2.3-1build2) ...
171s Selecting previously unselected package libtcl8.6:arm64.
171s Preparing to unpack .../090-libtcl8.6_8.6.13+dfsg-2_arm64.deb ...
171s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ...
171s Selecting previously unselected package libjbig0:arm64.
171s Preparing to unpack .../091-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
171s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
171s Selecting previously unselected package libwebp7:arm64.
171s Preparing to unpack .../092-libwebp7_1.3.2-0.4_arm64.deb ...
171s Unpacking libwebp7:arm64 (1.3.2-0.4) ...
171s Selecting previously unselected package libtiff6:arm64.
171s Preparing to unpack .../093-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
171s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
171s Selecting previously unselected package libxft2:arm64.
171s Preparing to unpack .../094-libxft2_2.3.6-1_arm64.deb ...
171s Unpacking libxft2:arm64 (2.3.6-1) ...
171s Selecting previously unselected package libxss1:arm64.
171s Preparing to unpack .../095-libxss1_1%3a1.2.3-1build2_arm64.deb ...
171s Unpacking libxss1:arm64 (1:1.2.3-1build2) ...
171s Selecting previously unselected package libtk8.6:arm64.
171s Preparing to unpack .../096-libtk8.6_8.6.13-2_arm64.deb ...
171s Unpacking libtk8.6:arm64 (8.6.13-2) ...
171s Selecting previously unselected package libxt6t64:arm64.
172s Preparing to unpack .../097-libxt6t64_1%3a1.2.1-1.2_arm64.deb ...
172s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ...
172s Selecting previously unselected package zip.
172s Preparing to unpack .../098-zip_3.0-13_arm64.deb ...
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172s Selecting previously unselected package unzip.
172s Preparing to unpack .../099-unzip_6.0-28ubuntu3_arm64.deb ...
172s Unpacking unzip (6.0-28ubuntu3) ...
172s Selecting previously unselected package xdg-utils.
172s Preparing to unpack .../100-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
172s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
172s Selecting previously unselected package r-base-core.
172s Preparing to unpack .../101-r-base-core_4.3.3-2build1_arm64.deb ...
172s Unpacking r-base-core (4.3.3-2build1) ...
172s Selecting previously unselected package r-cran-littler.
172s Preparing to unpack .../102-r-cran-littler_0.3.19-1_arm64.deb ...
172s Unpacking r-cran-littler (0.3.19-1) ...
172s Selecting previously unselected package littler.
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172s Unpacking littler (0.3.19-1) ...
172s Selecting previously unselected package pkgconf-bin.
172s Preparing to unpack .../104-pkgconf-bin_1.8.1-2_arm64.deb ...
172s Unpacking pkgconf-bin (1.8.1-2) ...
172s Selecting previously unselected package pkgconf:arm64.
172s Preparing to unpack .../105-pkgconf_1.8.1-2_arm64.deb ...
172s Unpacking pkgconf:arm64 (1.8.1-2) ...
172s Selecting previously unselected package pkg-config:arm64.
172s Preparing to unpack .../106-pkg-config_1.8.1-2_arm64.deb ...
172s Unpacking pkg-config:arm64 (1.8.1-2) ...
172s Selecting previously unselected package liblzma-dev:arm64.
172s Preparing to unpack .../107-liblzma-dev_5.4.5-0.3_arm64.deb ...
172s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ...
172s Selecting previously unselected package r-base-dev.
172s Preparing to unpack .../108-r-base-dev_4.3.3-2build1_all.deb ...
172s Unpacking r-base-dev (4.3.3-2build1) ...
172s Selecting previously unselected package pkg-r-autopkgtest.
172s Preparing to unpack .../109-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
172s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
172s Selecting previously unselected package r-bioc-biocgenerics.
173s Preparing to unpack .../110-r-bioc-biocgenerics_0.48.1-2_all.deb ...
173s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
173s Selecting previously unselected package r-bioc-biobase.
173s Preparing to unpack .../111-r-bioc-biobase_2.62.0-1_arm64.deb ...
173s Unpacking r-bioc-biobase (2.62.0-1) ...
173s Selecting previously unselected package r-bioc-zlibbioc.
173s Preparing to unpack .../112-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
173s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
173s Selecting previously unselected package r-bioc-affyio.
173s Preparing to unpack .../113-r-bioc-affyio_1.72.0-1_arm64.deb ...
173s Unpacking r-bioc-affyio (1.72.0-1) ...
173s Selecting previously unselected package r-cran-biocmanager.
173s Preparing to unpack .../114-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ...
173s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ...
173s Selecting previously unselected package r-bioc-preprocesscore.
173s Preparing to unpack .../115-r-bioc-preprocesscore_1.64.0+ds-1_arm64.deb ...
173s Unpacking r-bioc-preprocesscore (1.64.0+ds-1) ...
173s Selecting previously unselected package r-bioc-affy.
173s Preparing to unpack .../116-r-bioc-affy_1.80.0-1_arm64.deb ...
173s Unpacking r-bioc-affy (1.80.0-1) ...
173s Selecting previously unselected package r-bioc-s4vectors.
173s Preparing to unpack .../117-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ...
173s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
173s Selecting previously unselected package r-bioc-iranges.
173s Preparing to unpack .../118-r-bioc-iranges_2.36.0-1_arm64.deb ...
173s Unpacking r-bioc-iranges (2.36.0-1) ...
173s Selecting previously unselected package r-cran-dbi.
173s Preparing to unpack .../119-r-cran-dbi_1.2.2-1_all.deb ...
173s Unpacking r-cran-dbi (1.2.2-1) ...
173s Selecting previously unselected package r-cran-bit.
173s Preparing to unpack .../120-r-cran-bit_4.0.5-1_arm64.deb ...
173s Unpacking r-cran-bit (4.0.5-1) ...
173s Selecting previously unselected package r-cran-bit64.
173s Preparing to unpack .../121-r-cran-bit64_4.0.5-1_arm64.deb ...
173s Unpacking r-cran-bit64 (4.0.5-1) ...
173s Selecting previously unselected package r-cran-rlang.
173s Preparing to unpack .../122-r-cran-rlang_1.1.3-1_arm64.deb ...
173s Unpacking r-cran-rlang (1.1.3-1) ...
173s Selecting previously unselected package r-cran-cli.
173s Preparing to unpack .../123-r-cran-cli_3.6.2-1_arm64.deb ...
173s Unpacking r-cran-cli (3.6.2-1) ...
173s Selecting previously unselected package r-cran-glue.
173s Preparing to unpack .../124-r-cran-glue_1.7.0-1_arm64.deb ...
173s Unpacking r-cran-glue (1.7.0-1) ...
174s Selecting previously unselected package r-cran-lifecycle.
174s Preparing to unpack .../125-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
174s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
174s Selecting previously unselected package r-cran-vctrs.
174s Preparing to unpack .../126-r-cran-vctrs_0.6.5-1_arm64.deb ...
174s Unpacking r-cran-vctrs (0.6.5-1) ...
174s Selecting previously unselected package r-cran-blob.
174s Preparing to unpack .../127-r-cran-blob_1.2.4-1_all.deb ...
174s Unpacking r-cran-blob (1.2.4-1) ...
174s Selecting previously unselected package r-cran-fastmap.
174s Preparing to unpack .../128-r-cran-fastmap_1.1.1-1_arm64.deb ...
174s Unpacking r-cran-fastmap (1.1.1-1) ...
174s Selecting previously unselected package r-cran-cachem.
174s Preparing to unpack .../129-r-cran-cachem_1.0.8-1_arm64.deb ...
174s Unpacking r-cran-cachem (1.0.8-1) ...
174s Selecting previously unselected package r-cran-memoise.
174s Preparing to unpack .../130-r-cran-memoise_2.0.1-1_all.deb ...
174s Unpacking r-cran-memoise (2.0.1-1) ...
174s Selecting previously unselected package r-cran-pkgconfig.
174s Preparing to unpack .../131-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
174s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
174s Selecting previously unselected package r-cran-plogr.
174s Preparing to unpack .../132-r-cran-plogr_0.2.0-3build1_all.deb ...
174s Unpacking r-cran-plogr (0.2.0-3build1) ...
174s Selecting previously unselected package r-cran-cpp11.
174s Preparing to unpack .../133-r-cran-cpp11_0.4.7-1_all.deb ...
174s Unpacking r-cran-cpp11 (0.4.7-1) ...
174s Selecting previously unselected package r-cran-rsqlite.
174s Preparing to unpack .../134-r-cran-rsqlite_2.3.4-1_arm64.deb ...
174s Unpacking r-cran-rsqlite (2.3.4-1) ...
174s Selecting previously unselected package r-cran-curl.
174s Preparing to unpack .../135-r-cran-curl_5.2.0+dfsg-1_arm64.deb ...
174s Unpacking r-cran-curl (5.2.0+dfsg-1) ...
174s Selecting previously unselected package r-cran-jsonlite.
174s Preparing to unpack .../136-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ...
174s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
174s Selecting previously unselected package r-cran-mime.
174s Preparing to unpack .../137-r-cran-mime_0.12-1_arm64.deb ...
174s Unpacking r-cran-mime (0.12-1) ...
174s Selecting previously unselected package r-cran-sys.
174s Preparing to unpack .../138-r-cran-sys_3.4.2-1_arm64.deb ...
174s Unpacking r-cran-sys (3.4.2-1) ...
174s Selecting previously unselected package r-cran-askpass.
174s Preparing to unpack .../139-r-cran-askpass_1.2.0-1_arm64.deb ...
174s Unpacking r-cran-askpass (1.2.0-1) ...
174s Selecting previously unselected package r-cran-openssl.
174s Preparing to unpack .../140-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ...
174s Unpacking r-cran-openssl (2.1.1+dfsg-2) ...
174s Selecting previously unselected package r-cran-r6.
174s Preparing to unpack .../141-r-cran-r6_2.5.1-1_all.deb ...
174s Unpacking r-cran-r6 (2.5.1-1) ...
174s Selecting previously unselected package r-cran-httr.
174s Preparing to unpack .../142-r-cran-httr_1.4.7+dfsg-1_all.deb ...
174s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
174s Selecting previously unselected package r-cran-png.
174s Preparing to unpack .../143-r-cran-png_0.1-8-1_arm64.deb ...
174s Unpacking r-cran-png (0.1-8-1) ...
174s Selecting previously unselected package r-bioc-xvector.
174s Preparing to unpack .../144-r-bioc-xvector_0.42.0-1_arm64.deb ...
174s Unpacking r-bioc-xvector (0.42.0-1) ...
175s Selecting previously unselected package r-cran-bitops.
175s Preparing to unpack .../145-r-cran-bitops_1.0-7-1_arm64.deb ...
175s Unpacking r-cran-bitops (1.0-7-1) ...
175s Selecting previously unselected package r-cran-rcurl.
175s Preparing to unpack .../146-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ...
175s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ...
175s Selecting previously unselected package r-bioc-genomeinfodbdata.
175s Preparing to unpack .../147-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
175s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
175s Selecting previously unselected package r-bioc-genomeinfodb.
175s Preparing to unpack .../148-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
175s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
175s Selecting previously unselected package r-cran-crayon.
175s Preparing to unpack .../149-r-cran-crayon_1.5.2-1_all.deb ...
175s Unpacking r-cran-crayon (1.5.2-1) ...
175s Selecting previously unselected package r-bioc-biostrings.
175s Preparing to unpack .../150-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ...
175s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
175s Selecting previously unselected package r-bioc-keggrest.
175s Preparing to unpack .../151-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ...
175s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ...
175s Selecting previously unselected package r-bioc-annotationdbi.
175s Preparing to unpack .../152-r-bioc-annotationdbi_1.64.1-1_all.deb ...
175s Unpacking r-bioc-annotationdbi (1.64.1-1) ...
175s Selecting previously unselected package r-cran-xml.
175s Preparing to unpack .../153-r-cran-xml_3.99-0.16.1-1_arm64.deb ...
175s Unpacking r-cran-xml (3.99-0.16.1-1) ...
175s Selecting previously unselected package r-cran-xtable.
175s Preparing to unpack .../154-r-cran-xtable_1%3a1.8-4-2_all.deb ...
175s Unpacking r-cran-xtable (1:1.8-4-2) ...
175s Selecting previously unselected package r-bioc-annotate.
175s Preparing to unpack .../155-r-bioc-annotate_1.80.0+dfsg-1_all.deb ...
175s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ...
175s Selecting previously unselected package r-cran-formatr.
175s Preparing to unpack .../156-r-cran-formatr_1.14-1_all.deb ...
175s Unpacking r-cran-formatr (1.14-1) ...
175s Selecting previously unselected package r-cran-lambda.r.
175s Preparing to unpack .../157-r-cran-lambda.r_1.2.4-2build1_all.deb ...
175s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
175s Selecting previously unselected package r-cran-futile.options.
175s Preparing to unpack .../158-r-cran-futile.options_1.0.1-3build1_all.deb ...
175s Unpacking r-cran-futile.options (1.0.1-3build1) ...
175s Selecting previously unselected package r-cran-futile.logger.
175s Preparing to unpack .../159-r-cran-futile.logger_1.4.3-4build1_all.deb ...
175s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
175s Selecting previously unselected package r-cran-snow.
175s Preparing to unpack .../160-r-cran-snow_1%3a0.4.4-2_all.deb ...
175s Unpacking r-cran-snow (1:0.4.4-2) ...
175s Selecting previously unselected package r-cran-codetools.
176s Preparing to unpack .../161-r-cran-codetools_0.2-19-1_all.deb ...
176s Unpacking r-cran-codetools (0.2-19-1) ...
176s Selecting previously unselected package r-cran-bh.
176s Preparing to unpack .../162-r-cran-bh_1.84.0-1_all.deb ...
176s Unpacking r-cran-bh (1.84.0-1) ...
176s Selecting previously unselected package r-bioc-biocparallel.
176s Preparing to unpack .../163-r-bioc-biocparallel_1.36.0-1_arm64.deb ...
176s Unpacking r-bioc-biocparallel (1.36.0-1) ...
176s Selecting previously unselected package r-cran-lattice.
176s Preparing to unpack .../164-r-cran-lattice_0.22-5-1_arm64.deb ...
176s Unpacking r-cran-lattice (0.22-5-1) ...
176s Selecting previously unselected package r-cran-matrix.
176s Preparing to unpack .../165-r-cran-matrix_1.6-5-1_arm64.deb ...
176s Unpacking r-cran-matrix (1.6-5-1) ...
176s Selecting previously unselected package r-cran-matrixstats.
176s Preparing to unpack .../166-r-cran-matrixstats_1.2.0-1_arm64.deb ...
176s Unpacking r-cran-matrixstats (1.2.0-1) ...
176s Selecting previously unselected package r-bioc-matrixgenerics.
176s Preparing to unpack .../167-r-bioc-matrixgenerics_1.14.0-1_all.deb ...
176s Unpacking r-bioc-matrixgenerics (1.14.0-1) ...
176s Selecting previously unselected package r-cran-abind.
176s Preparing to unpack .../168-r-cran-abind_1.4-5-2_all.deb ...
176s Unpacking r-cran-abind (1.4-5-2) ...
176s Selecting previously unselected package r-bioc-s4arrays.
176s Preparing to unpack .../169-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ...
176s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ...
176s Selecting previously unselected package r-bioc-sparsearray.
176s Preparing to unpack .../170-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ...
176s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ...
176s Selecting previously unselected package r-bioc-delayedarray.
176s Preparing to unpack .../171-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ...
176s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ...
176s Selecting previously unselected package r-bioc-genomicranges.
176s Preparing to unpack .../172-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ...
176s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ...
176s Selecting previously unselected package r-bioc-summarizedexperiment.
176s Preparing to unpack .../173-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ...
176s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
176s Selecting previously unselected package r-cran-locfit.
176s Preparing to unpack .../174-r-cran-locfit_1.5-9.8-1_arm64.deb ...
176s Unpacking r-cran-locfit (1.5-9.8-1) ...
176s Selecting previously unselected package r-cran-gtable.
176s Preparing to unpack .../175-r-cran-gtable_0.3.4+dfsg-1_all.deb ...
176s Unpacking r-cran-gtable (0.3.4+dfsg-1) ...
176s Selecting previously unselected package r-cran-isoband.
176s Preparing to unpack .../176-r-cran-isoband_0.2.7-1_arm64.deb ...
176s Unpacking r-cran-isoband (0.2.7-1) ...
176s Selecting previously unselected package r-cran-mass.
176s Preparing to unpack .../177-r-cran-mass_7.3-60.0.1-1_arm64.deb ...
176s Unpacking r-cran-mass (7.3-60.0.1-1) ...
176s Selecting previously unselected package r-cran-nlme.
176s Preparing to unpack .../178-r-cran-nlme_3.1.164-1_arm64.deb ...
176s Unpacking r-cran-nlme (3.1.164-1) ...
177s Selecting previously unselected package r-cran-mgcv.
177s Preparing to unpack .../179-r-cran-mgcv_1.9-1-1_arm64.deb ...
177s Unpacking r-cran-mgcv (1.9-1-1) ...
177s Selecting previously unselected package r-cran-farver.
177s Preparing to unpack .../180-r-cran-farver_2.1.1-1_arm64.deb ...
177s Unpacking r-cran-farver (2.1.1-1) ...
177s Selecting previously unselected package r-cran-labeling.
177s Preparing to unpack .../181-r-cran-labeling_0.4.3-1_all.deb ...
177s Unpacking r-cran-labeling (0.4.3-1) ...
177s Selecting previously unselected package r-cran-colorspace.
177s Preparing to unpack .../182-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ...
177s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
177s Selecting previously unselected package r-cran-munsell.
177s Preparing to unpack .../183-r-cran-munsell_0.5.0-2build1_all.deb ...
177s Unpacking r-cran-munsell (0.5.0-2build1) ...
177s Selecting previously unselected package r-cran-rcolorbrewer.
177s Preparing to unpack .../184-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
177s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
177s Selecting previously unselected package r-cran-viridislite.
177s Preparing to unpack .../185-r-cran-viridislite_0.4.2-2_all.deb ...
177s Unpacking r-cran-viridislite (0.4.2-2) ...
177s Selecting previously unselected package r-cran-scales.
177s Preparing to unpack .../186-r-cran-scales_1.3.0-1_all.deb ...
177s Unpacking r-cran-scales (1.3.0-1) ...
177s Selecting previously unselected package r-cran-fansi.
177s Preparing to unpack .../187-r-cran-fansi_1.0.5-1_arm64.deb ...
177s Unpacking r-cran-fansi (1.0.5-1) ...
177s Selecting previously unselected package r-cran-magrittr.
177s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_arm64.deb ...
177s Unpacking r-cran-magrittr (2.0.3-1) ...
177s Selecting previously unselected package r-cran-utf8.
177s Preparing to unpack .../189-r-cran-utf8_1.2.4-1_arm64.deb ...
177s Unpacking r-cran-utf8 (1.2.4-1) ...
177s Selecting previously unselected package r-cran-pillar.
177s Preparing to unpack .../190-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
177s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
177s Selecting previously unselected package r-cran-tibble.
177s Preparing to unpack .../191-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ...
177s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
177s Selecting previously unselected package r-cran-withr.
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177s Unpacking r-cran-withr (2.5.0-1) ...
177s Selecting previously unselected package r-cran-ggplot2.
177s Preparing to unpack .../193-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ...
177s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ...
177s Selecting previously unselected package r-cran-pkgkitten.
177s Preparing to unpack .../194-r-cran-pkgkitten_0.2.3-1_all.deb ...
177s Unpacking r-cran-pkgkitten (0.2.3-1) ...
177s Selecting previously unselected package r-cran-rcpp.
177s Preparing to unpack .../195-r-cran-rcpp_1.0.12-1_arm64.deb ...
177s Unpacking r-cran-rcpp (1.0.12-1) ...
178s Selecting previously unselected package r-cran-rcpparmadillo.
178s Preparing to unpack .../196-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ...
178s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ...
178s Selecting previously unselected package r-bioc-deseq2.
178s Preparing to unpack .../197-r-bioc-deseq2_1.42.0+dfsg-1_arm64.deb ...
178s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ...
178s Selecting previously unselected package r-bioc-rhtslib.
178s Preparing to unpack .../198-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ...
178s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ...
178s Selecting previously unselected package r-bioc-rsamtools.
178s Preparing to unpack .../199-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ...
178s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ...
178s Selecting previously unselected package r-cran-runit.
178s Preparing to unpack .../200-r-cran-runit_0.4.32-3_all.deb ...
178s Unpacking r-cran-runit (0.4.32-3) ...
178s Selecting previously unselected package autopkgtest-satdep.
178s Preparing to unpack .../201-1-autopkgtest-satdep.deb ...
178s Unpacking autopkgtest-satdep (0) ...
178s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
178s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
178s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
178s Setting up libpaper1:arm64 (1.1.29) ...
179s 
179s Creating config file /etc/papersize with new version
179s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
179s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
179s Setting up libdatrie1:arm64 (0.2.13-3) ...
179s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
179s Setting up libxcb-render0:arm64 (1.15-1) ...
179s Setting up unzip (6.0-28ubuntu3) ...
179s Setting up x11-common (1:7.7+23ubuntu2) ...
179s Setting up libpsl5t64:arm64 (0.21.2-1.1) ...
179s Setting up libdeflate0:arm64 (1.19-1) ...
179s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ...
179s Setting up libxcb-shm0:arm64 (1.15-1) ...
179s Setting up libpaper-utils (1.1.29) ...
179s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
179s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
179s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
179s Setting up zip (3.0-13) ...
179s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
179s Setting up libblas3:arm64 (3.12.0-3) ...
179s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
179s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
179s Setting up libpkgconf3:arm64 (1.8.1-2) ...
179s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
179s Setting up fonts-dejavu-mono (2.37-8) ...
179s Setting up libpng16-16t64:arm64 (1.6.43-3) ...
179s Setting up libmpc3:arm64 (1.3.1-1) ...
179s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ...
179s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ...
179s Setting up icu-devtools (74.2-1ubuntu1) ...
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179s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
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180s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
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180s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
180s Setting up pkg-config:arm64 (1.8.1-2) ...
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180s Setting up curl (8.5.0-2ubuntu7) ...
180s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
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180s Setting up fontconfig (2.15.0-1ubuntu1) ...
182s Regenerating fonts cache... done.
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182s Setting up libtk8.6:arm64 (8.6.13-2) ...
182s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
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182s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
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182s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
182s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
182s Setting up gcc (4:13.2.0-7ubuntu1) ...
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182s Setting up r-base-core (4.3.3-2build1) ...
182s 
182s Creating config file /etc/R/Renviron with new version
182s Setting up r-cran-crayon (1.5.2-1) ...
182s Setting up r-cran-labeling (0.4.3-1) ...
182s Setting up r-cran-futile.options (1.0.1-3build1) ...
182s Setting up r-cran-lattice (0.22-5-1) ...
182s Setting up r-cran-nlme (3.1.164-1) ...
182s Setting up r-cran-farver (2.1.1-1) ...
182s Setting up r-cran-formatr (1.14-1) ...
182s Setting up r-cran-xml (3.99-0.16.1-1) ...
182s Setting up r-cran-viridislite (0.4.2-2) ...
182s Setting up r-cran-locfit (1.5-9.8-1) ...
182s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
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182s Setting up r-cran-pkgkitten (0.2.3-1) ...
182s Setting up r-cran-magrittr (2.0.3-1) ...
182s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
182s Setting up r-cran-littler (0.3.19-1) ...
182s Setting up r-cran-bh (1.84.0-1) ...
182s Setting up r-cran-rcpp (1.0.12-1) ...
182s Setting up r-cran-curl (5.2.0+dfsg-1) ...
182s Setting up r-cran-codetools (0.2-19-1) ...
182s Setting up r-bioc-biocgenerics (0.48.1-2) ...
182s Setting up r-cran-rlang (1.1.3-1) ...
182s Setting up r-cran-matrixstats (1.2.0-1) ...
182s Setting up littler (0.3.19-1) ...
182s Setting up r-bioc-matrixgenerics (1.14.0-1) ...
182s Setting up r-cran-sys (3.4.2-1) ...
182s Setting up r-cran-plogr (0.2.0-3build1) ...
182s Setting up r-cran-withr (2.5.0-1) ...
182s Setting up r-cran-mime (0.12-1) ...
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182s Setting up r-cran-cli (3.6.2-1) ...
182s Setting up gfortran (4:13.2.0-7ubuntu1) ...
182s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
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182s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
182s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
182s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
182s Setting up r-cran-bitops (1.0-7-1) ...
182s Setting up r-cran-bit64 (4.0.5-1) ...
182s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
182s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
182s Setting up r-cran-askpass (1.2.0-1) ...
182s Setting up r-cran-fastmap (1.1.1-1) ...
182s Setting up r-cran-png (0.1-8-1) ...
182s Setting up r-bioc-biobase (2.62.0-1) ...
182s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
182s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
182s Setting up r-cran-utf8 (1.2.4-1) ...
182s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
182s Setting up r-cran-cpp11 (0.4.7-1) ...
182s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
182s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
182s Setting up r-cran-isoband (0.2.7-1) ...
182s Setting up r-cran-runit (0.4.32-3) ...
182s Setting up r-cran-futile.logger (1.4.3-4build1) ...
182s Setting up r-cran-gtable (0.3.4+dfsg-1) ...
182s Setting up r-cran-matrix (1.6-5-1) ...
182s Setting up r-cran-mgcv (1.9-1-1) ...
182s Setting up g++ (4:13.2.0-7ubuntu1) ...
182s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
182s Setting up r-cran-cachem (1.0.8-1) ...
182s Setting up build-essential (12.10ubuntu1) ...
182s Setting up r-bioc-preprocesscore (1.64.0+ds-1) ...
182s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ...
182s Setting up r-bioc-iranges (2.36.0-1) ...
182s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
182s Setting up r-cran-vctrs (0.6.5-1) ...
182s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
182s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
182s Setting up r-bioc-affyio (1.72.0-1) ...
182s Setting up r-base-dev (4.3.3-2build1) ...
182s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
182s Setting up r-bioc-biocparallel (1.36.0-1) ...
182s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ...
182s Setting up r-cran-munsell (0.5.0-2build1) ...
182s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
182s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
182s Setting up r-cran-httr (1.4.7+dfsg-1) ...
182s Setting up r-bioc-affy (1.80.0-1) ...
182s Setting up r-cran-scales (1.3.0-1) ...
182s Setting up r-cran-memoise (2.0.1-1) ...
182s Setting up r-cran-blob (1.2.4-1) ...
182s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
182s Setting up r-bioc-xvector (0.42.0-1) ...
182s Setting up r-cran-rsqlite (2.3.4-1) ...
182s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
182s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
182s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
182s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
182s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
182s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
182s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
182s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
182s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ...
182s Setting up r-bioc-annotationdbi (1.64.1-1) ...
182s Setting up r-bioc-annotate (1.80.0+dfsg-1) ...
182s Setting up autopkgtest-satdep (0) ...
182s Processing triggers for man-db (2.12.0-3) ...
183s Processing triggers for install-info (7.1-3) ...
183s Processing triggers for libc-bin (2.39-0ubuntu2) ...
194s (Reading database ... 105979 files and directories currently installed.)
194s Removing autopkgtest-satdep (0) ...
195s autopkgtest [17:25:26]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
195s autopkgtest [17:25:26]: test pkg-r-autopkgtest: [-----------------------
195s Test: Try to load the R library BiocGenerics
195s 
195s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
195s Copyright (C) 2024 The R Foundation for Statistical Computing
195s Platform: aarch64-unknown-linux-gnu (64-bit)
195s 
195s R is free software and comes with ABSOLUTELY NO WARRANTY.
195s You are welcome to redistribute it under certain conditions.
195s Type 'license()' or 'licence()' for distribution details.
195s 
195s R is a collaborative project with many contributors.
195s Type 'contributors()' for more information and
195s 'citation()' on how to cite R or R packages in publications.
195s 
195s Type 'demo()' for some demos, 'help()' for on-line help, or
195s 'help.start()' for an HTML browser interface to help.
195s Type 'q()' to quit R.
195s 
195s > library('BiocGenerics')
196s 
196s Attaching package: ‘BiocGenerics’
196s 
196s > 
196s > 
196s The following objects are masked from ‘package:stats’:
196s 
196s     IQR, mad, sd, var, xtabs
196s 
196s The following objects are masked from ‘package:base’:
196s 
196s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
196s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
196s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
196s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
196s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
196s     table, tapply, union, unique, unsplit, which.max, which.min
196s 
196s Other tests are currently unsupported!
196s They will be progressively added.
196s autopkgtest [17:25:27]: test pkg-r-autopkgtest: -----------------------]
196s autopkgtest [17:25:27]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
196s pkg-r-autopkgtest    PASS
197s autopkgtest [17:25:28]: @@@@@@@@@@@@@@@@@@@@ summary
197s pkg-r-autopkgtest    PASS
215s Creating nova instance adt-noble-arm64-r-bioc-biocgenerics-20240316-172211-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...