0s autopkgtest [17:21:35]: starting date and time: 2024-03-16 17:21:35+0000
  0s autopkgtest [17:21:35]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [17:21:35]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.y986ore_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-biobase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-21.secgroup --name adt-noble-arm64-r-bioc-biobase-20240316-172135-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
124s autopkgtest [17:23:39]: testbed dpkg architecture: arm64
124s autopkgtest [17:23:39]: testbed apt version: 2.7.12
124s autopkgtest [17:23:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup
125s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
125s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
125s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB]
125s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB]
126s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
126s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
126s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
126s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
126s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
126s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB]
126s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
126s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB]
126s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
128s Fetched 9063 kB in 2s (4780 kB/s)
128s Reading package lists...
131s Reading package lists...
131s Building dependency tree...
131s Reading state information...
131s Calculating upgrade...
132s The following packages will be REMOVED:
132s   libglib2.0-0 libssl3
132s The following NEW packages will be installed:
132s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
132s The following packages have been kept back:
132s   curl
132s The following packages will be upgraded:
132s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
132s   ubuntu-minimal ubuntu-standard
132s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
132s Need to get 4613 kB of archives.
132s After this operation, 211 kB of additional disk space will be used.
132s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
132s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
132s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
132s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
133s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
133s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
133s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
133s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
133s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
133s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
133s Fetched 4613 kB in 1s (6805 kB/s)
133s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
133s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
133s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
133s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
133s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
133s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
133s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
133s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
133s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
133s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
133s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
133s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
133s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
133s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
133s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
133s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
133s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
133s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
133s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
133s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
133s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
133s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
133s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
133s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
133s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
133s  fwupd depends on libglib2.0-0 (>= 2.79.0).
133s  bolt depends on libglib2.0-0 (>= 2.56.0).
133s 
133s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
133s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
133s Selecting previously unselected package libglib2.0-0t64:arm64.
133s (Reading database ... 
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(Reading database ... 74733 files and directories currently installed.)
133s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
133s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
133s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
133s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
133s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
133s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
134s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
134s  wget depends on libssl3 (>= 3.0.0).
134s  u-boot-tools depends on libssl3 (>= 3.0.0).
134s  tnftp depends on libssl3 (>= 3.0.0).
134s  tcpdump depends on libssl3 (>= 3.0.0).
134s  systemd-resolved depends on libssl3 (>= 3.0.0).
134s  systemd depends on libssl3 (>= 3.0.0).
134s  sudo depends on libssl3 (>= 3.0.0).
134s  sbsigntool depends on libssl3 (>= 3.0.0).
134s  rsync depends on libssl3 (>= 3.0.0).
134s  python3-cryptography depends on libssl3 (>= 3.0.0).
134s  openssh-server depends on libssl3 (>= 3.0.10).
134s  openssh-client depends on libssl3 (>= 3.0.10).
134s  mtd-utils depends on libssl3 (>= 3.0.0).
134s  mokutil depends on libssl3 (>= 3.0.0).
134s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
134s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
134s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
134s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
134s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
134s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
134s  libnvme1 depends on libssl3 (>= 3.0.0).
134s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
134s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
134s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
134s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
134s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
134s  kmod depends on libssl3 (>= 3.0.0).
134s  dhcpcd-base depends on libssl3 (>= 3.0.0).
134s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
134s 
134s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
134s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
134s Selecting previously unselected package libssl3t64:arm64.
134s (Reading database ... 
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(Reading database ... 74747 files and directories currently installed.)
134s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
134s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
134s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
134s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
134s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ...
134s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
134s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ...
134s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
134s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ...
134s Unpacking ubuntu-minimal (1.536) over (1.535) ...
134s Selecting previously unselected package xdg-user-dirs.
134s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ...
134s Unpacking xdg-user-dirs (0.18-1) ...
134s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ...
134s Unpacking ubuntu-standard (1.536) over (1.535) ...
134s Setting up ubuntu-minimal (1.536) ...
134s Setting up xdg-user-dirs (0.18-1) ...
134s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
134s Setting up libtirpc-common (1.3.4+ds-1.1) ...
134s Setting up ubuntu-standard (1.536) ...
134s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
134s No schema files found: doing nothing.
134s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
134s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
134s Setting up openssl (3.0.13-0ubuntu1) ...
134s Setting up readline-common (8.2-3.1) ...
134s Processing triggers for man-db (2.12.0-3) ...
135s Processing triggers for install-info (7.1-3) ...
135s Processing triggers for libc-bin (2.39-0ubuntu2) ...
135s Reading package lists...
135s Building dependency tree...
135s Reading state information...
136s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
136s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
136s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
137s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
137s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
138s Reading package lists...
138s Reading package lists...
138s Building dependency tree...
138s Reading state information...
139s Calculating upgrade...
139s The following packages have been kept back:
139s   curl
139s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
139s Reading package lists...
139s Building dependency tree...
139s Reading state information...
140s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
143s autopkgtest [17:23:58]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
143s autopkgtest [17:23:58]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biobase
145s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biobase 2.62.0-1 (dsc) [2080 B]
145s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biobase 2.62.0-1 (tar) [1796 kB]
145s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biobase 2.62.0-1 (diff) [8580 B]
145s gpgv: Signature made Wed Nov 29 15:09:55 2023 UTC
145s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
145s gpgv:                issuer "tillea@rki.de"
145s gpgv: Can't check signature: No public key
145s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biobase_2.62.0-1.dsc: no acceptable signature found
145s autopkgtest [17:24:00]: testing package r-bioc-biobase version 2.62.0-1
146s autopkgtest [17:24:01]: build not needed
147s autopkgtest [17:24:02]: test pkg-r-autopkgtest: preparing testbed
148s Reading package lists...
148s Building dependency tree...
148s Reading state information...
149s Starting pkgProblemResolver with broken count: 0
149s Starting 2 pkgProblemResolver with broken count: 0
149s Done
150s The following additional packages will be installed:
150s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
150s   curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core
150s   fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings
150s   fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu
150s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
150s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
150s   gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8
150s   libatomic1 libbibtex-parser-perl libblas-dev libblas3 libbz2-dev
150s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64
150s   libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev
150s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
150s   libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
150s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
150s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
150s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
150s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
150s   libjs-popper.js libjs-prettify libjs-sifter.js
150s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
150s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
150s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
150s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
150s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
150s   libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev
150s   libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6
150s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
150s   libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0
150s   libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64
150s   libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv
150s   node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf
150s   pkgconf-bin r-base-core r-base-dev r-bioc-all r-bioc-biobase
150s   r-bioc-biocgenerics r-bioc-biocstyle r-cran-base64enc r-cran-biocmanager
150s   r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark
150s   r-cran-crayon r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fastmap
150s   r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools
150s   r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later
150s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime
150s   r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp
150s   r-cran-rlang r-cran-rmarkdown r-cran-runit r-cran-sass r-cran-shiny
150s   r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tinytex r-cran-vctrs
150s   r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils
150s   tex-common texlive-base texlive-bibtex-extra texlive-binaries
150s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
150s Suggested packages:
150s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
150s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
150s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2
150s   | lighttpd | httpd liblapack-doc glibc-doc icu-doc libjs-jquery-ui-docs
150s   fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc
150s   readline-doc libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended
150s   texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context
150s   wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex
150s   citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib
150s   r-base-html texlive-plain-generic texlive-fonts-recommended
150s   texlive-fonts-extra texlive-extra-utils texinfo r-cran-rpart
150s   r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray
150s   r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
150s   r-bioc-deseq2 r-bioc-annotate r-cran-rstudioapi r-cran-markdown
150s   r-cran-testthat r-cran-getopt r-cran-covr r-cran-httr r-cran-roxygen2
150s   r-cran-inline r-cran-callr r-cran-plm r-cran-zoo r-cran-survival debhelper
150s   ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec
150s   texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex
150s Recommended packages:
150s   bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools
150s   r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-testthat
150s   r-cran-curl r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi
150s   r-cran-miniui r-cran-rsconnect r-cran-tibble r-cran-testit r-cran-tufte
150s   r-cran-xml2 r-cran-webshot r-cran-ggplot2 r-cran-thematic r-cran-callr
150s   r-cran-covr r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot
150s   r-cran-whoami r-cran-lattice r-cran-dplyr r-cran-rsvg r-cran-pillar
150s   r-cran-spelling r-cran-dbi r-cran-rsqlite r-cran-waldo r-cran-cairo
150s   r-cran-markdown r-cran-ragg r-cran-httr r-cran-r.rsp r-cran-sf
150s   r-cran-codetools r-cran-formatr r-cran-gridsvg r-cran-jpeg r-cran-magick
150s   r-cran-png r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite
150s   node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-future r-cran-purrr
150s   r-cran-usethis r-cran-dygraphs r-cran-bit64 r-cran-generics r-cran-pkgdown
150s   r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl
150s   libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
150s The following packages will be REMOVED:
150s   libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3
150s The following NEW packages will be installed:
150s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
150s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
150s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
150s   fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13
150s   g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
150s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
150s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
150s   javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev
150s   libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev
150s   libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
150s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
150s   libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0
150s   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
150s   libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
150s   libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js
150s   libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js
150s   libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js
150s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
150s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
150s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
150s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
150s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
150s   libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev
150s   libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6
150s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
150s   libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0
150s   libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64
150s   libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv
150s   node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf
150s   pkgconf-bin r-base-core r-base-dev r-bioc-all r-bioc-biobase
150s   r-bioc-biocgenerics r-bioc-biocstyle r-cran-base64enc r-cran-biocmanager
150s   r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark
150s   r-cran-crayon r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fastmap
150s   r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools
150s   r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later
150s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime
150s   r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp
150s   r-cran-rlang r-cran-rmarkdown r-cran-runit r-cran-sass r-cran-shiny
150s   r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tinytex r-cran-vctrs
150s   r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils
150s   tex-common texlive-base texlive-bibtex-extra texlive-binaries
150s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
150s The following packages will be upgraded:
150s   curl
150s 1 upgraded, 211 newly installed, 5 to remove and 0 not upgraded.
150s Need to get 327 MB/327 MB of archives.
150s After this operation, 1049 MB of additional disk space will be used.
150s Get:1 /tmp/autopkgtest.ZDtZIc/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [748 B]
150s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB]
150s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB]
150s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB]
150s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB]
150s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB]
150s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB]
150s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
150s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
150s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
150s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB]
150s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
150s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
150s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
151s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
151s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
151s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
151s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
151s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
151s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
151s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
151s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
151s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
151s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
151s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
151s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
151s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
151s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
151s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
151s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
151s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
151s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
151s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
151s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
151s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
152s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
152s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
152s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
152s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
152s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
152s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
152s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
152s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
152s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
152s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
152s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
152s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
152s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
152s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB]
152s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
152s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
152s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
152s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
152s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
152s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
152s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
152s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
152s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B]
152s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB]
152s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB]
152s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB]
152s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
152s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
152s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
152s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
152s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
152s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
152s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
152s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
152s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
152s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
152s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
153s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
153s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
153s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
153s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
153s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
153s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
153s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
153s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
153s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
153s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
153s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
153s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
153s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB]
153s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
153s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
153s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
153s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
153s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
153s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
153s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
153s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
153s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
153s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
153s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
153s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB]
153s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
153s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
153s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
153s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB]
153s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
153s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
154s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
154s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
154s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
154s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
154s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
154s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
154s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
154s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
154s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
154s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
154s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
154s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
154s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB]
154s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB]
154s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB]
154s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB]
154s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
154s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
154s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB]
154s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
154s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB]
154s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB]
154s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
154s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
154s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
154s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
154s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
154s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
154s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB]
154s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB]
154s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB]
154s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB]
154s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB]
154s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB]
154s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
154s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
154s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
154s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB]
155s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB]
155s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B]
155s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB]
155s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
155s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
155s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB]
155s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB]
156s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
156s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
156s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
156s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
156s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B]
156s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
156s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
156s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB]
156s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-all all 1.44.0-1 [11.4 MB]
156s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB]
156s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB]
156s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB]
156s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB]
156s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB]
156s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB]
156s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB]
156s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB]
156s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
156s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB]
156s Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
157s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
157s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB]
157s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
157s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB]
157s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB]
157s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB]
157s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
157s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
157s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB]
157s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB]
157s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
157s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB]
157s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB]
157s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
157s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
157s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
157s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB]
157s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
157s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB]
157s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB]
157s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
157s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
157s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB]
157s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB]
157s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB]
157s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB]
157s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
157s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB]
157s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB]
157s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB]
157s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB]
157s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
157s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
157s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
157s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB]
158s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
158s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB]
158s Get:206 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB]
158s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB]
158s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB]
159s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB]
159s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB]
162s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB]
162s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB]
163s Preconfiguring packages ...
163s Fetched 327 MB in 12s (27.1 MB/s)
163s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested:
163s  wget depends on libpsl5 (>= 0.16.0).
163s  libcurl4:arm64 depends on libpsl5 (>= 0.16.0).
163s  libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0).
163s 
163s (Reading database ... 
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(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74774 files and directories currently installed.)
163s Removing libpsl5:arm64 (0.21.2-1build1) ...
163s Selecting previously unselected package libpsl5t64:arm64.
164s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74769 files and directories currently installed.)
164s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ...
164s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ...
164s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ...
164s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
164s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74775 files and directories currently installed.)
164s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ...
164s Selecting previously unselected package libcurl4t64:arm64.
164s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74770 files and directories currently installed.)
164s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ...
164s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
164s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested:
164s  libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2).
164s  libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1).
164s 
164s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74776 files and directories currently installed.)
164s Removing libpng16-16:arm64 (1.6.43-1) ...
164s Selecting previously unselected package libpng16-16t64:arm64.
164s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74766 files and directories currently installed.)
164s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ...
164s Unpacking libpng16-16t64:arm64 (1.6.43-3) ...
164s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested:
164s  parted depends on libreadline8 (>= 6.0).
164s  libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
164s  gpgsm depends on libreadline8 (>= 6.0).
164s  gpgconf depends on libreadline8 (>= 6.0).
164s  gpg depends on libreadline8 (>= 6.0).
164s  gawk depends on libreadline8 (>= 6.0).
164s  fdisk depends on libreadline8 (>= 6.0).
164s 
164s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74777 files and directories currently installed.)
164s Removing libreadline8:arm64 (8.2-3) ...
164s Selecting previously unselected package libreadline8t64:arm64.
164s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74765 files and directories currently installed.)
164s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ...
164s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
164s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
164s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
164s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
164s Unpacking libreadline8t64:arm64 (8.2-3.1) ...
164s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested:
164s  lsof depends on libtirpc3 (>= 1.0.2).
164s  libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
164s  libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2).
164s  libnsl2:arm64 depends on libtirpc3 (>= 1.0.2).
164s  iproute2 depends on libtirpc3 (>= 1.0.2).
164s 
164s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74785 files and directories currently installed.)
164s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ...
164s Selecting previously unselected package libtirpc3t64:arm64.
164s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74779 files and directories currently installed.)
164s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ...
164s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
164s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
164s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
164s Selecting previously unselected package libc-dev-bin.
164s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
164s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
164s Selecting previously unselected package linux-libc-dev:arm64.
164s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ...
164s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
164s Selecting previously unselected package libcrypt-dev:arm64.
164s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
164s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
164s Selecting previously unselected package libtirpc-dev:arm64.
164s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ...
164s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
164s Selecting previously unselected package libnsl-dev:arm64.
164s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ...
164s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
164s Selecting previously unselected package rpcsvc-proto.
165s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
165s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
165s Selecting previously unselected package libc6-dev:arm64.
165s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ...
165s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
165s Selecting previously unselected package libisl23:arm64.
165s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ...
165s Unpacking libisl23:arm64 (0.26-3) ...
165s Selecting previously unselected package libmpc3:arm64.
165s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ...
165s Unpacking libmpc3:arm64 (1.3.1-1) ...
165s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
165s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
165s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
165s Selecting previously unselected package cpp-13.
165s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
165s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
165s Selecting previously unselected package cpp-aarch64-linux-gnu.
165s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
165s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
165s Selecting previously unselected package cpp.
165s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
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168s Selecting previously unselected package fonts-dejavu-mono.
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169s Selecting previously unselected package libgfortran5:arm64.
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170s Selecting previously unselected package libgraphite2-3:arm64.
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170s Selecting previously unselected package libice6:arm64.
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171s Selecting previously unselected package libjpeg-turbo8:arm64.
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172s Selecting previously unselected package libkpathsea6:arm64.
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172s Selecting previously unselected package libpangocairo-1.0-0:arm64.
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173s Selecting previously unselected package libtexlua53-5:arm64.
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173s Preparing to unpack .../119-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
173s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
173s Selecting previously unselected package libwebp7:arm64.
173s Preparing to unpack .../120-libwebp7_1.3.2-0.4_arm64.deb ...
173s Unpacking libwebp7:arm64 (1.3.2-0.4) ...
173s Selecting previously unselected package libtiff6:arm64.
173s Preparing to unpack .../121-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
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173s Selecting previously unselected package libxft2:arm64.
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173s Selecting previously unselected package libxss1:arm64.
173s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build2_arm64.deb ...
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173s Selecting previously unselected package libtk8.6:arm64.
173s Preparing to unpack .../124-libtk8.6_8.6.13-2_arm64.deb ...
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173s Selecting previously unselected package libxt6t64:arm64.
173s Preparing to unpack .../125-libxt6t64_1%3a1.2.1-1.2_arm64.deb ...
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173s Selecting previously unselected package libxmu6:arm64.
173s Preparing to unpack .../126-libxmu6_2%3a1.1.3-3_arm64.deb ...
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173s Selecting previously unselected package libxpm4:arm64.
173s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1_arm64.deb ...
173s Unpacking libxpm4:arm64 (1:3.5.17-1) ...
173s Selecting previously unselected package libxaw7:arm64.
173s Preparing to unpack .../128-libxaw7_2%3a1.0.14-1_arm64.deb ...
173s Unpacking libxaw7:arm64 (2:1.0.14-1) ...
173s Selecting previously unselected package libxi6:arm64.
173s Preparing to unpack .../129-libxi6_2%3a1.8.1-1_arm64.deb ...
173s Unpacking libxi6:arm64 (2:1.8.1-1) ...
174s Selecting previously unselected package libzzip-0-13:arm64.
174s Preparing to unpack .../130-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ...
174s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ...
174s Selecting previously unselected package zip.
174s Preparing to unpack .../131-zip_3.0-13_arm64.deb ...
174s Unpacking zip (3.0-13) ...
174s Selecting previously unselected package unzip.
174s Preparing to unpack .../132-unzip_6.0-28ubuntu3_arm64.deb ...
174s Unpacking unzip (6.0-28ubuntu3) ...
174s Selecting previously unselected package xdg-utils.
174s Preparing to unpack .../133-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
174s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
174s Selecting previously unselected package r-base-core.
174s Preparing to unpack .../134-r-base-core_4.3.3-2build1_arm64.deb ...
174s Unpacking r-base-core (4.3.3-2build1) ...
175s Selecting previously unselected package r-cran-littler.
175s Preparing to unpack .../135-r-cran-littler_0.3.19-1_arm64.deb ...
175s Unpacking r-cran-littler (0.3.19-1) ...
175s Selecting previously unselected package littler.
175s Preparing to unpack .../136-littler_0.3.19-1_all.deb ...
175s Unpacking littler (0.3.19-1) ...
175s Selecting previously unselected package node-bootstrap-sass.
175s Preparing to unpack .../137-node-bootstrap-sass_3.4.3-2_all.deb ...
175s Unpacking node-bootstrap-sass (3.4.3-2) ...
175s Selecting previously unselected package node-html5shiv.
175s Preparing to unpack .../138-node-html5shiv_3.7.3+dfsg-5_all.deb ...
175s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
175s Selecting previously unselected package node-normalize.css.
175s Preparing to unpack .../139-node-normalize.css_8.0.1-5_all.deb ...
175s Unpacking node-normalize.css (8.0.1-5) ...
175s Selecting previously unselected package pandoc-data.
175s Preparing to unpack .../140-pandoc-data_3.1.3-1_all.deb ...
175s Unpacking pandoc-data (3.1.3-1) ...
175s Selecting previously unselected package pandoc.
175s Preparing to unpack .../141-pandoc_3.1.3+ds-2_arm64.deb ...
175s Unpacking pandoc (3.1.3+ds-2) ...
176s Selecting previously unselected package pkgconf-bin.
176s Preparing to unpack .../142-pkgconf-bin_1.8.1-2_arm64.deb ...
176s Unpacking pkgconf-bin (1.8.1-2) ...
176s Selecting previously unselected package pkgconf:arm64.
176s Preparing to unpack .../143-pkgconf_1.8.1-2_arm64.deb ...
176s Unpacking pkgconf:arm64 (1.8.1-2) ...
176s Selecting previously unselected package pkg-config:arm64.
176s Preparing to unpack .../144-pkg-config_1.8.1-2_arm64.deb ...
176s Unpacking pkg-config:arm64 (1.8.1-2) ...
176s Selecting previously unselected package liblzma-dev:arm64.
176s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ...
176s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ...
176s Selecting previously unselected package r-base-dev.
176s Preparing to unpack .../146-r-base-dev_4.3.3-2build1_all.deb ...
176s Unpacking r-base-dev (4.3.3-2build1) ...
177s Selecting previously unselected package pkg-r-autopkgtest.
177s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
177s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
177s Selecting previously unselected package r-bioc-biocgenerics.
177s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ...
177s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
177s Selecting previously unselected package r-bioc-biobase.
177s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_arm64.deb ...
177s Unpacking r-bioc-biobase (2.62.0-1) ...
177s Selecting previously unselected package r-bioc-all.
177s Preparing to unpack .../150-r-bioc-all_1.44.0-1_all.deb ...
177s Unpacking r-bioc-all (1.44.0-1) ...
177s Selecting previously unselected package r-cran-base64enc.
177s Preparing to unpack .../151-r-cran-base64enc_0.1-3-3_arm64.deb ...
177s Unpacking r-cran-base64enc (0.1-3-3) ...
177s Selecting previously unselected package r-cran-digest.
177s Preparing to unpack .../152-r-cran-digest_0.6.34-1_arm64.deb ...
177s Unpacking r-cran-digest (0.6.34-1) ...
177s Selecting previously unselected package r-cran-rlang.
177s Preparing to unpack .../153-r-cran-rlang_1.1.3-1_arm64.deb ...
177s Unpacking r-cran-rlang (1.1.3-1) ...
177s Selecting previously unselected package r-cran-ellipsis.
177s Preparing to unpack .../154-r-cran-ellipsis_0.3.2-2_arm64.deb ...
177s Unpacking r-cran-ellipsis (0.3.2-2) ...
177s Selecting previously unselected package r-cran-fastmap.
177s Preparing to unpack .../155-r-cran-fastmap_1.1.1-1_arm64.deb ...
177s Unpacking r-cran-fastmap (1.1.1-1) ...
177s Selecting previously unselected package r-cran-htmltools.
177s Preparing to unpack .../156-r-cran-htmltools_0.5.7-1_arm64.deb ...
177s Unpacking r-cran-htmltools (0.5.7-1) ...
177s Selecting previously unselected package r-cran-evaluate.
177s Preparing to unpack .../157-r-cran-evaluate_0.23-1_all.deb ...
177s Unpacking r-cran-evaluate (0.23-1) ...
177s Selecting previously unselected package r-cran-xfun.
177s Preparing to unpack .../158-r-cran-xfun_0.41+dfsg-1_arm64.deb ...
177s Unpacking r-cran-xfun (0.41+dfsg-1) ...
177s Selecting previously unselected package r-cran-highr.
177s Preparing to unpack .../159-r-cran-highr_0.10+dfsg-1_all.deb ...
177s Unpacking r-cran-highr (0.10+dfsg-1) ...
177s Selecting previously unselected package r-cran-yaml.
177s Preparing to unpack .../160-r-cran-yaml_2.3.8-1_arm64.deb ...
177s Unpacking r-cran-yaml (2.3.8-1) ...
177s Selecting previously unselected package libjs-mathjax.
177s Preparing to unpack .../161-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
177s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
178s Selecting previously unselected package r-cran-knitr.
178s Preparing to unpack .../162-r-cran-knitr_1.45+dfsg-1_all.deb ...
178s Unpacking r-cran-knitr (1.45+dfsg-1) ...
178s Selecting previously unselected package r-cran-cachem.
178s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ...
178s Unpacking r-cran-cachem (1.0.8-1) ...
178s Selecting previously unselected package r-cran-jquerylib.
178s Preparing to unpack .../164-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
178s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
178s Selecting previously unselected package r-cran-jsonlite.
179s Preparing to unpack .../165-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ...
179s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
179s Selecting previously unselected package r-cran-cli.
179s Preparing to unpack .../166-r-cran-cli_3.6.2-1_arm64.deb ...
179s Unpacking r-cran-cli (3.6.2-1) ...
179s Selecting previously unselected package r-cran-glue.
179s Preparing to unpack .../167-r-cran-glue_1.7.0-1_arm64.deb ...
179s Unpacking r-cran-glue (1.7.0-1) ...
179s Selecting previously unselected package r-cran-lifecycle.
179s Preparing to unpack .../168-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
179s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
179s Selecting previously unselected package r-cran-memoise.
179s Preparing to unpack .../169-r-cran-memoise_2.0.1-1_all.deb ...
179s Unpacking r-cran-memoise (2.0.1-1) ...
179s Selecting previously unselected package r-cran-mime.
179s Preparing to unpack .../170-r-cran-mime_0.12-1_arm64.deb ...
179s Unpacking r-cran-mime (0.12-1) ...
179s Selecting previously unselected package r-cran-fs.
179s Preparing to unpack .../171-r-cran-fs_1.6.3+dfsg-1_arm64.deb ...
179s Unpacking r-cran-fs (1.6.3+dfsg-1) ...
179s Selecting previously unselected package r-cran-r6.
179s Preparing to unpack .../172-r-cran-r6_2.5.1-1_all.deb ...
179s Unpacking r-cran-r6 (2.5.1-1) ...
180s Selecting previously unselected package r-cran-rappdirs.
180s Preparing to unpack .../173-r-cran-rappdirs_0.3.3-1_arm64.deb ...
180s Unpacking r-cran-rappdirs (0.3.3-1) ...
180s Selecting previously unselected package r-cran-sass.
180s Preparing to unpack .../174-r-cran-sass_0.4.8+dfsg-1_arm64.deb ...
180s Unpacking r-cran-sass (0.4.8+dfsg-1) ...
180s Selecting previously unselected package r-cran-bslib.
180s Preparing to unpack .../175-r-cran-bslib_0.6.1+dfsg-1_all.deb ...
180s Unpacking r-cran-bslib (0.6.1+dfsg-1) ...
180s Selecting previously unselected package r-cran-fontawesome.
180s Preparing to unpack .../176-r-cran-fontawesome_0.5.2-1_all.deb ...
180s Unpacking r-cran-fontawesome (0.5.2-1) ...
180s Selecting previously unselected package r-cran-magrittr.
180s Preparing to unpack .../177-r-cran-magrittr_2.0.3-1_arm64.deb ...
180s Unpacking r-cran-magrittr (2.0.3-1) ...
180s Selecting previously unselected package r-cran-stringi.
180s Preparing to unpack .../178-r-cran-stringi_1.8.3-1_arm64.deb ...
180s Unpacking r-cran-stringi (1.8.3-1) ...
180s Selecting previously unselected package r-cran-vctrs.
180s Preparing to unpack .../179-r-cran-vctrs_0.6.5-1_arm64.deb ...
180s Unpacking r-cran-vctrs (0.6.5-1) ...
180s Selecting previously unselected package r-cran-stringr.
181s Preparing to unpack .../180-r-cran-stringr_1.5.1-1_all.deb ...
181s Unpacking r-cran-stringr (1.5.1-1) ...
181s Selecting previously unselected package r-cran-tinytex.
181s Preparing to unpack .../181-r-cran-tinytex_0.49-1_all.deb ...
181s Unpacking r-cran-tinytex (0.49-1) ...
181s Selecting previously unselected package libjs-modernizr.
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181s Unpacking libjs-modernizr (2.6.2+ds1-5) ...
181s Selecting previously unselected package r-cran-pkgkitten.
181s Preparing to unpack .../183-r-cran-pkgkitten_0.2.3-1_all.deb ...
181s Unpacking r-cran-pkgkitten (0.2.3-1) ...
181s Selecting previously unselected package r-cran-rcpp.
181s Preparing to unpack .../184-r-cran-rcpp_1.0.12-1_arm64.deb ...
181s Unpacking r-cran-rcpp (1.0.12-1) ...
181s Selecting previously unselected package r-cran-later.
181s Preparing to unpack .../185-r-cran-later_1.3.2+dfsg-1_arm64.deb ...
181s Unpacking r-cran-later (1.3.2+dfsg-1) ...
181s Selecting previously unselected package r-cran-promises.
181s Preparing to unpack .../186-r-cran-promises_1.2.1+dfsg-1_arm64.deb ...
181s Unpacking r-cran-promises (1.2.1+dfsg-1) ...
181s Selecting previously unselected package r-cran-httpuv.
181s Preparing to unpack .../187-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ...
181s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ...
181s Selecting previously unselected package r-cran-xtable.
181s Preparing to unpack .../188-r-cran-xtable_1%3a1.8-4-2_all.deb ...
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181s Selecting previously unselected package r-cran-sourcetools.
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181s Selecting previously unselected package r-cran-crayon.
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181s Selecting previously unselected package r-cran-withr.
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182s Selecting previously unselected package r-cran-commonmark.
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182s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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182s Selecting previously unselected package r-cran-shiny.
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182s Selecting previously unselected package r-cran-rmarkdown.
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182s Selecting previously unselected package r-cran-bookdown.
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182s Selecting previously unselected package r-cran-biocmanager.
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182s Selecting previously unselected package tex-common.
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187s Selecting previously unselected package r-bioc-biocstyle.
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187s Selecting previously unselected package r-cran-runit.
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187s Selecting previously unselected package autopkgtest-satdep.
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187s Unpacking autopkgtest-satdep (0) ...
187s Setting up libjs-json (0~20221030+~1.0.8-1) ...
187s Setting up javascript-common (11+nmu1) ...
188s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
188s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
188s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
188s Setting up libpaper1:arm64 (1.1.29) ...
188s 
188s Creating config file /etc/papersize with new version
188s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
188s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
188s Setting up libxpm4:arm64 (1:3.5.17-1) ...
188s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
188s Setting up libxi6:arm64 (2:1.8.1-1) ...
188s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
188s Setting up libdatrie1:arm64 (0.2.13-3) ...
188s Setting up libjs-popper.js (1.16.1+ds-6) ...
188s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
188s Setting up libxcb-render0:arm64 (1.15-1) ...
188s Setting up libjs-sifter.js (0.6.0+dfsg-3) ...
188s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
188s Setting up libjs-lunr (2.3.9~dfsg-2) ...
188s Setting up unzip (6.0-28ubuntu3) ...
188s Setting up liblatex-tounicode-perl (0.54-2) ...
188s Setting up x11-common (1:7.7+23ubuntu2) ...
189s Setting up node-html5shiv (3.7.3+dfsg-5) ...
189s Setting up libpsl5t64:arm64 (0.21.2-1.1) ...
189s Setting up libdeflate0:arm64 (1.19-1) ...
189s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ...
189s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ...
189s Setting up libxcb-shm0:arm64 (1.15-1) ...
189s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ...
189s Setting up libpaper-utils (1.1.29) ...
189s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
189s Setting up libjs-modernizr (2.6.2+ds1-5) ...
189s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
189s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
189s Setting up libjs-es5-shim (4.6.7-2) ...
189s Setting up tex-common (6.18) ...
189s update-language: texlive-base not installed and configured, doing nothing!
189s Setting up libio-string-perl (1.08-4) ...
189s Setting up zip (3.0-13) ...
189s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
189s Setting up libblas3:arm64 (3.12.0-3) ...
189s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
189s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
189s Setting up libpkgconf3:arm64 (1.8.1-2) ...
189s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
189s Setting up libteckit0:arm64 (2.5.12+ds1-1) ...
189s Setting up t1utils (1.41-4build2) ...
189s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ...
189s Setting up libjs-d3 (3.5.17-4) ...
189s Setting up fonts-dejavu-mono (2.37-8) ...
189s Setting up libpng16-16t64:arm64 (1.6.43-3) ...
189s Setting up libmpc3:arm64 (1.3.1-1) ...
189s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ...
189s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ...
189s Setting up icu-devtools (74.2-1ubuntu1) ...
189s Setting up fonts-dejavu-core (2.37-8) ...
189s Setting up pkgconf-bin (1.8.1-2) ...
189s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
189s Setting up libkpathsea6:arm64 (2023.20230311.66589-9) ...
189s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
189s Setting up libwebp7:arm64 (1.3.2-0.4) ...
189s Setting up libreadline8t64:arm64 (8.2-3.1) ...
189s Setting up liblzma-dev:arm64 (5.4.5-0.3) ...
189s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ...
189s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
189s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
189s Setting up libnsl-dev:arm64 (1.3.0-3) ...
189s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ...
189s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ...
189s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ...
189s Setting up fonts-lmodern (2.005-1) ...
189s Setting up liblua5.4-0:arm64 (5.4.6-3) ...
189s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
189s Setting up libthai-data (0.1.29-2) ...
189s Setting up node-bootstrap-sass (3.4.3-2) ...
189s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ...
189s Setting up libxss1:arm64 (1:1.2.3-1build2) ...
189s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ...
189s Setting up pandoc-data (3.1.3-1) ...
189s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ...
189s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
189s Setting up libisl23:arm64 (0.26-3) ...
189s Setting up libc-dev-bin (2.39-0ubuntu2) ...
189s Setting up node-normalize.css (8.0.1-5) ...
189s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
189s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
189s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
189s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ...
189s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ...
189s Setting up libblas-dev:arm64 (3.12.0-3) ...
189s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
189s Setting up dctrl-tools (2.24-3build2) ...
189s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
189s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ...
189s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ...
189s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
189s Setting up libpotrace0:arm64 (1.16-2) ...
189s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
189s Setting up libice6:arm64 (2:1.0.10-1build2) ...
189s Setting up liblapack3:arm64 (3.12.0-3) ...
189s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
189s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
189s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
189s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
189s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
189s Setting up libbibtex-parser-perl (1.04+dfsg-1) ...
189s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
189s Setting up pkgconf:arm64 (1.8.1-2) ...
189s Setting up libthai0:arm64 (0.1.29-2) ...
189s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
189s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
189s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ...
189s Setting up pandoc (3.1.3+ds-2) ...
189s Setting up liblapack-dev:arm64 (3.12.0-3) ...
189s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
189s Setting up pkg-config:arm64 (1.8.1-2) ...
189s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
189s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
189s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ...
189s Setting up curl (8.5.0-2ubuntu7) ...
189s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
189s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
189s Setting up libsm6:arm64 (2:1.2.3-1build2) ...
189s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ...
189s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
189s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
189s Setting up fontconfig (2.15.0-1ubuntu1) ...
192s Regenerating fonts cache... done.
192s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
192s Setting up libxft2:arm64 (2.3.6-1) ...
192s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
192s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ...
192s Setting up cpp-13 (13.2.0-17ubuntu2) ...
192s Setting up libtk8.6:arm64 (8.6.13-2) ...
192s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
193s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
193s Setting up libreadline-dev:arm64 (8.2-3.1) ...
193s Setting up libcairo2:arm64 (1.18.0-1) ...
193s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ...
193s Setting up gcc-13 (13.2.0-17ubuntu2) ...
193s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
193s Setting up cpp (4:13.2.0-7ubuntu1) ...
193s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
193s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
193s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
193s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
193s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
193s Setting up g++-13 (13.2.0-17ubuntu2) ...
193s Setting up libxmu6:arm64 (2:1.1.3-3) ...
193s Setting up libpng-dev:arm64 (1.6.43-3) ...
193s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
193s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
193s Setting up libxaw7:arm64 (2:1.0.14-1) ...
193s Setting up gcc (4:13.2.0-7ubuntu1) ...
193s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
193s Setting up r-base-core (4.3.3-2build1) ...
195s 
195s Creating config file /etc/R/Renviron with new version
196s Setting up r-cran-crayon (1.5.2-1) ...
196s Setting up r-cran-sourcetools (0.1.7-1-1) ...
196s Setting up texlive-binaries (2023.20230311.66589-9) ...
196s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
196s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
196s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
196s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
196s Setting up r-cran-commonmark (1.9.1-1) ...
196s Setting up r-cran-r6 (2.5.1-1) ...
196s Setting up r-cran-pkgkitten (0.2.3-1) ...
196s Setting up texlive-base (2023.20240207-1) ...
197s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
197s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
197s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
198s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
198s Setting up r-cran-magrittr (2.0.3-1) ...
198s Setting up r-cran-rappdirs (0.3.3-1) ...
198s Setting up r-cran-littler (0.3.19-1) ...
198s Setting up r-cran-fs (1.6.3+dfsg-1) ...
198s Setting up r-cran-rcpp (1.0.12-1) ...
198s Setting up r-bioc-biocgenerics (0.48.1-2) ...
198s Setting up r-cran-rlang (1.1.3-1) ...
198s Setting up littler (0.3.19-1) ...
198s Setting up r-cran-xfun (0.41+dfsg-1) ...
198s Setting up r-cran-withr (2.5.0-1) ...
198s Setting up r-cran-mime (0.12-1) ...
198s Setting up r-cran-base64enc (0.1-3-3) ...
198s Setting up r-cran-digest (0.6.34-1) ...
198s Setting up r-cran-yaml (2.3.8-1) ...
198s Setting up r-cran-evaluate (0.23-1) ...
198s Setting up r-cran-highr (0.10+dfsg-1) ...
198s Setting up r-cran-glue (1.7.0-1) ...
198s Setting up r-cran-xtable (1:1.8-4-2) ...
198s Setting up r-cran-cli (3.6.2-1) ...
198s Setting up gfortran (4:13.2.0-7ubuntu1) ...
198s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
198s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
198s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
198s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
198s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
198s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
198s Setting up r-cran-fastmap (1.1.1-1) ...
198s Setting up r-bioc-biobase (2.62.0-1) ...
198s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
198s Setting up r-cran-stringi (1.8.3-1) ...
198s Setting up texlive-latex-base (2023.20240207-1) ...
198s Setting up r-cran-runit (0.4.32-3) ...
198s Setting up r-cran-later (1.3.2+dfsg-1) ...
198s Setting up r-cran-tinytex (0.49-1) ...
198s Setting up r-cran-knitr (1.45+dfsg-1) ...
198s Setting up g++ (4:13.2.0-7ubuntu1) ...
198s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
198s Setting up r-cran-cachem (1.0.8-1) ...
198s Setting up build-essential (12.10ubuntu1) ...
198s Setting up r-cran-vctrs (0.6.5-1) ...
198s Setting up r-cran-ellipsis (0.3.2-2) ...
198s Setting up r-base-dev (4.3.3-2build1) ...
198s Setting up r-bioc-all (1.44.0-1) ...
198s Setting up r-cran-stringr (1.5.1-1) ...
198s Setting up texlive-bibtex-extra (2023.20240207-1) ...
198s Setting up r-cran-memoise (2.0.1-1) ...
198s Setting up r-cran-promises (1.2.1+dfsg-1) ...
198s Setting up r-cran-htmltools (0.5.7-1) ...
198s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
198s Setting up r-cran-sass (0.4.8+dfsg-1) ...
198s Setting up r-cran-httpuv (1.6.14+dfsg-1) ...
198s Setting up r-cran-fontawesome (0.5.2-1) ...
198s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
198s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
198s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
198s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
198s Setting up r-cran-bookdown (0.37+dfsg-1) ...
198s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ...
198s Setting up autopkgtest-satdep (0) ...
198s Processing triggers for man-db (2.12.0-3) ...
199s Processing triggers for install-info (7.1-3) ...
199s Processing triggers for libc-bin (2.39-0ubuntu2) ...
200s Processing triggers for tex-common (6.18) ...
200s Running updmap-sys. This may take some time... done.
200s Running mktexlsr /var/lib/texmf ... done.
200s Building format(s) --all.
237s 	This may take some time... done.
249s (Reading database ... 101511 files and directories currently installed.)
249s Removing autopkgtest-satdep (0) ...
250s autopkgtest [17:25:45]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
250s autopkgtest [17:25:45]: test pkg-r-autopkgtest: [-----------------------
250s Test: Try to load the R library Biobase
251s 
251s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
251s Copyright (C) 2024 The R Foundation for Statistical Computing
251s Platform: aarch64-unknown-linux-gnu (64-bit)
251s 
251s R is free software and comes with ABSOLUTELY NO WARRANTY.
251s You are welcome to redistribute it under certain conditions.
251s Type 'license()' or 'licence()' for distribution details.
251s 
251s R is a collaborative project with many contributors.
251s Type 'contributors()' for more information and
251s 'citation()' on how to cite R or R packages in publications.
251s 
251s Type 'demo()' for some demos, 'help()' for on-line help, or
251s 'help.start()' for an HTML browser interface to help.
251s Type 'q()' to quit R.
251s 
252s > library('Biobase')
252s Loading required package: BiocGenerics
252s 
252s Attaching package: ‘BiocGenerics’
252s 
252s The following objects are masked from ‘package:stats’:
252s 
252s     IQR, mad, sd, var, xtabs
252s 
252s The following objects are masked from ‘package:base’:
252s 
252s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
252s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
252s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
252s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
252s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
252s     table, tapply, union, unique, unsplit, which.max, which.min
252s 
252s Welcome to Bioconductor
252s 
252s     Vignettes contain introductory material; view with
252s     'browseVignettes()'. To cite Bioconductor, see
252s     'citation("Biobase")', and for packages 'citation("pkgname")'.
252s 
252s > 
252s > 
252s Other tests are currently unsupported!
252s They will be progressively added.
252s autopkgtest [17:25:47]: test pkg-r-autopkgtest: -----------------------]
253s autopkgtest [17:25:48]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
253s pkg-r-autopkgtest    PASS
253s autopkgtest [17:25:48]: @@@@@@@@@@@@@@@@@@@@ summary
253s pkg-r-autopkgtest    PASS
265s Creating nova instance adt-noble-arm64-r-bioc-biobase-20240316-172135-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...