0s autopkgtest [17:20:22]: starting date and time: 2024-03-16 17:20:22+0000 0s autopkgtest [17:20:22]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:20:22]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7veihw7s/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-ballgown --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-13.secgroup --name adt-noble-arm64-r-bioc-ballgown-20240316-172022-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 131s autopkgtest [17:22:33]: testbed dpkg architecture: arm64 131s autopkgtest [17:22:33]: testbed apt version: 2.7.12 131s autopkgtest [17:22:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 131s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 132s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 132s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 132s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 132s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 132s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 132s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 132s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 132s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 132s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 133s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 133s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 133s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 135s Fetched 9063 kB in 2s (5240 kB/s) 135s Reading package lists... 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 140s Calculating upgrade... 140s The following packages will be REMOVED: 140s libglib2.0-0 libssl3 140s The following NEW packages will be installed: 140s libglib2.0-0t64 libssl3t64 xdg-user-dirs 140s The following packages have been kept back: 140s curl 140s The following packages will be upgraded: 140s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 140s ubuntu-minimal ubuntu-standard 141s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 141s Need to get 4613 kB of archives. 141s After this operation, 211 kB of additional disk space will be used. 141s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 141s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 141s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 141s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 141s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 141s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 141s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 141s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 141s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 141s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 142s Fetched 4613 kB in 1s (5794 kB/s) 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 142s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 142s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 142s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 142s udisks2 depends on libglib2.0-0 (>= 2.77.0). 142s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 142s python3-gi depends on libglib2.0-0 (>= 2.77.0). 142s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 142s netplan.io depends on libglib2.0-0 (>= 2.70.0). 142s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 142s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 142s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 142s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 142s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 142s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 142s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 142s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 142s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 142s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 142s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 142s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 142s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 142s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 142s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 142s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 142s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 142s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 142s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 142s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 142s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 142s fwupd depends on libglib2.0-0 (>= 2.79.0). 142s bolt depends on libglib2.0-0 (>= 2.56.0). 142s 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 142s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 142s Selecting previously unselected package libglib2.0-0t64:arm64. 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 142s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 142s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 142s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 142s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 142s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 142s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 143s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 143s wget depends on libssl3 (>= 3.0.0). 143s u-boot-tools depends on libssl3 (>= 3.0.0). 143s tnftp depends on libssl3 (>= 3.0.0). 143s tcpdump depends on libssl3 (>= 3.0.0). 143s systemd-resolved depends on libssl3 (>= 3.0.0). 143s systemd depends on libssl3 (>= 3.0.0). 143s sudo depends on libssl3 (>= 3.0.0). 143s sbsigntool depends on libssl3 (>= 3.0.0). 143s rsync depends on libssl3 (>= 3.0.0). 143s python3-cryptography depends on libssl3 (>= 3.0.0). 143s openssh-server depends on libssl3 (>= 3.0.10). 143s openssh-client depends on libssl3 (>= 3.0.10). 143s mtd-utils depends on libssl3 (>= 3.0.0). 143s mokutil depends on libssl3 (>= 3.0.0). 143s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 143s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 143s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 143s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 143s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 143s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 143s libnvme1 depends on libssl3 (>= 3.0.0). 143s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 143s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 143s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 143s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 143s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 143s kmod depends on libssl3 (>= 3.0.0). 143s dhcpcd-base depends on libssl3 (>= 3.0.0). 143s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 143s 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 143s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 143s Selecting previously unselected package libssl3t64:arm64. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 143s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 143s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 143s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 143s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 143s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 143s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 143s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 143s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 143s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 143s Unpacking ubuntu-minimal (1.536) over (1.535) ... 143s Selecting previously unselected package xdg-user-dirs. 143s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 143s Unpacking xdg-user-dirs (0.18-1) ... 143s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 143s Unpacking ubuntu-standard (1.536) over (1.535) ... 143s Setting up ubuntu-minimal (1.536) ... 143s Setting up xdg-user-dirs (0.18-1) ... 143s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 143s Setting up libtirpc-common (1.3.4+ds-1.1) ... 143s Setting up ubuntu-standard (1.536) ... 143s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 143s No schema files found: doing nothing. 143s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 143s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 143s Setting up openssl (3.0.13-0ubuntu1) ... 143s Setting up readline-common (8.2-3.1) ... 143s Processing triggers for man-db (2.12.0-3) ... 144s Processing triggers for install-info (7.1-3) ... 145s Processing triggers for libc-bin (2.39-0ubuntu2) ... 145s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 147s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 147s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 147s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 147s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 149s Reading package lists... 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 150s Calculating upgrade... 150s The following packages have been kept back: 150s curl 150s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 150s Reading package lists... 151s Building dependency tree... 151s Reading state information... 151s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 154s autopkgtest [17:22:56]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 155s autopkgtest [17:22:57]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ballgown 157s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ballgown 2.34.0+dfsg-1 (dsc) [2301 B] 157s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ballgown 2.34.0+dfsg-1 (tar) [2497 kB] 157s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ballgown 2.34.0+dfsg-1 (diff) [5660 B] 158s gpgv: Signature made Fri Dec 1 09:27:33 2023 UTC 158s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 158s gpgv: issuer "tille@debian.org" 158s gpgv: Can't check signature: No public key 158s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ballgown_2.34.0+dfsg-1.dsc: no acceptable signature found 158s autopkgtest [17:23:00]: testing package r-bioc-ballgown version 2.34.0+dfsg-1 158s autopkgtest [17:23:00]: build not needed 160s autopkgtest [17:23:02]: test pkg-r-autopkgtest: preparing testbed 161s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s Starting pkgProblemResolver with broken count: 0 163s Starting 2 pkgProblemResolver with broken count: 0 163s Done 164s The following additional packages will be installed: 164s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 164s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 164s fonts-dejavu-mono fonts-glyphicons-halflings fonts-mathjax g++ g++-13 164s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 164s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 164s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 164s libasan8 libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev 164s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 164s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 164s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 164s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 164s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 164s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 164s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 164s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 164s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 164s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 164s libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0 164s libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 164s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 164s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 164s linux-libc-dev littler node-normalize.css pkg-config pkg-r-autopkgtest 164s pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 164s r-bioc-annotationdbi r-bioc-ballgown r-bioc-biobase r-bioc-biocgenerics 164s r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray 164s r-bioc-edger r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 164s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 164s r-bioc-limma r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 164s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 164s r-bioc-summarizedexperiment r-bioc-sva r-bioc-xvector r-bioc-zlibbioc 164s r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops 164s r-cran-blob r-cran-brio r-cran-cachem r-cran-callr r-cran-cli 164s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 164s r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate 164s r-cran-fansi r-cran-fastmap r-cran-formatr r-cran-fs r-cran-futile.logger 164s r-cran-futile.options r-cran-glue r-cran-highr r-cran-httr r-cran-jsonlite 164s r-cran-knitr r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler 164s r-cran-locfit r-cran-magrittr r-cran-markdown r-cran-matrix 164s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme 164s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 164s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 164s r-cran-processx r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp 164s r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang 164s r-cran-rprojroot r-cran-rsqlite r-cran-snow r-cran-statmod r-cran-survival 164s r-cran-sys r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs 164s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml 164s rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 164s Suggested packages: 164s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 164s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 164s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 164s liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev 164s libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev 164s libboost-contract1.83-dev libboost-coroutine1.83-dev 164s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 164s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 164s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 164s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 164s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 164s libboost-numpy1.83-dev libboost-program-options1.83-dev 164s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 164s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 164s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 164s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 164s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 164s glibc-doc icu-doc fonts-mathjax-extras fonts-stix libjs-mathjax-doc 164s liblzma-doc ncurses-doc readline-doc libstdc++-13-doc tcl8.6 tk8.6 164s libjs-html5shiv elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 164s texlive-base texlive-latex-base texlive-plain-generic 164s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 164s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db 164s r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle r-bioc-all 164s r-bioc-affy r-bioc-deseq2 r-cran-rmarkdown r-cran-foreach r-cran-bbmisc 164s r-cran-doparallel r-bioc-variantannotation r-bioc-shortread 164s r-cran-batchtools r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures 164s r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats r-cran-readr 164s r-bioc-rhdf5 r-cran-seuratobject r-cran-class r-cran-r.utils r-bioc-gviz 164s r-bioc-annotationhub r-bioc-dexseq r-cran-biasedurn r-cran-ellipse 164s r-cran-gplots r-cran-mass r-bioc-sparsematrixstats r-bioc-bladderbatch 164s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-spelling r-cran-rstudioapi 164s r-cran-rmysql r-cran-shiny r-cran-getopt r-cran-interp r-cran-gam 164s r-cran-dplyr r-cran-formattable r-cran-ggplot2 r-cran-nanotime 164s r-cran-palmerpenguins r-cran-scales r-cran-stringi r-cran-units 164s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-bench 164s r-cran-here r-cran-hms r-cran-htmltools r-cran-purrr r-cran-tidyr r-cran-plm 164s r-cran-zoo 164s Recommended packages: 164s bzip2-doc manpages manpages-dev libc-devtools javascript-common libpng-tools 164s r-recommended r-doc-html r-cran-covr r-cran-cliapp r-cran-mockery 164s r-cran-htmltools r-cran-htmlwidgets r-cran-rmarkdown r-cran-rstudioapi 164s r-cran-whoami r-cran-xml2 r-cran-bench r-cran-decor r-cran-ggplot2 164s r-cran-lobstr r-cran-progress r-cran-scales r-cran-spelling r-cran-later 164s r-cran-httpuv r-cran-webutils r-cran-gh r-cran-unitizer r-cran-testit 164s r-cran-dplyr r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf r-cran-bslib 164s r-cran-gridsvg r-cran-magick r-cran-ragg r-cran-reticulate r-cran-rgl 164s r-cran-sass r-cran-tikzdevice r-cran-tinytex r-cran-webshot r-cran-svglite 164s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-base64enc 164s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr 164s r-cran-remotes r-cran-webfakes r-cran-pingr r-cran-runit r-cran-usethis 164s r-cran-dbitest r-cran-gert r-cran-hms r-cran-rvest r-cran-shiny 164s r-cran-data.table r-cran-formattable r-cran-generics r-cran-pkgdown 164s r-cran-zeallot r-cran-renv libfile-mimeinfo-perl libnet-dbus-perl 164s libx11-protocol-perl x11-utils x11-xserver-utils 164s The following packages will be REMOVED: 164s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 164s The following NEW packages will be installed: 164s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 164s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 164s fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-mathjax 164s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 164s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 164s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 164s libasan8 libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev 164s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 164s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 164s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 164s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 164s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 164s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 164s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 164s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 164s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 164s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 164s libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0 164s libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 164s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 164s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 164s linux-libc-dev littler node-normalize.css pkg-config pkg-r-autopkgtest 164s pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 164s r-bioc-annotationdbi r-bioc-ballgown r-bioc-biobase r-bioc-biocgenerics 164s r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray 164s r-bioc-edger r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 164s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 164s r-bioc-limma r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 164s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 164s r-bioc-summarizedexperiment r-bioc-sva r-bioc-xvector r-bioc-zlibbioc 164s r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops 164s r-cran-blob r-cran-brio r-cran-cachem r-cran-callr r-cran-cli 164s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 164s r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate 164s r-cran-fansi r-cran-fastmap r-cran-formatr r-cran-fs r-cran-futile.logger 164s r-cran-futile.options r-cran-glue r-cran-highr r-cran-httr r-cran-jsonlite 164s r-cran-knitr r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler 164s r-cran-locfit r-cran-magrittr r-cran-markdown r-cran-matrix 164s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme 164s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 164s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 164s r-cran-processx r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp 164s r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang 164s r-cran-rprojroot r-cran-rsqlite r-cran-snow r-cran-statmod r-cran-survival 164s r-cran-sys r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs 164s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml 164s rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 164s The following packages will be upgraded: 164s curl 164s 1 upgraded, 231 newly installed, 5 to remove and 0 not upgraded. 164s Need to get 272 MB/272 MB of archives. 164s After this operation, 819 MB of additional disk space will be used. 164s Get:1 /tmp/autopkgtest.uyCco6/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [748 B] 164s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 164s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 165s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 165s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 165s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 165s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 165s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 165s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 165s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 165s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 165s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 165s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 165s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 165s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 165s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 165s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 165s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 165s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 165s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 165s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 165s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 165s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 165s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 165s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 165s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 165s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 165s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 165s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 165s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 165s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 166s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 166s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 166s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 166s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 166s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 166s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 166s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 166s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 166s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 166s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 166s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 166s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 166s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 166s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 166s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 166s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 166s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 166s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 166s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 166s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 166s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 166s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 166s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 166s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 166s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 166s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 166s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 167s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 167s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 167s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 167s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 167s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 167s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 167s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 167s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 167s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 167s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 167s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 167s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 167s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 167s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 167s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 167s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 167s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 167s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 167s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 167s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 167s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 167s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 167s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 167s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 167s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 167s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 167s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 167s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 167s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 167s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 167s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 167s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 167s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 167s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 167s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 167s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 168s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 168s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 168s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 168s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 168s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 168s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 168s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 168s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 168s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 168s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 168s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 168s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 168s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 168s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 168s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 168s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 168s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 168s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 168s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 168s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 169s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 169s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 169s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 169s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 169s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 169s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 169s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 169s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 169s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 169s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 169s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 169s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 169s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 169s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 169s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 169s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 169s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 169s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 169s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 169s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 169s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 169s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 169s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 169s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 169s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 169s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 169s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 169s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 169s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 169s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 169s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 169s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 169s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 169s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 169s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 169s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 169s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 170s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 170s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 170s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 170s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 170s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 170s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 170s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 170s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 170s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 170s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 170s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 170s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 170s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 170s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 170s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 170s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 170s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 170s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 171s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 171s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 171s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 171s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 171s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 171s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 171s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 171s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 171s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 171s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 171s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 171s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 171s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 171s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 171s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 171s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 171s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 171s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 171s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 171s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 171s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sva arm64 3.50.0-1 [465 kB] 171s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 171s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 171s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 171s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 171s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 171s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 171s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 171s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 171s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 171s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 171s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 171s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 171s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 172s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ballgown all 2.34.0+dfsg-1 [2946 kB] 172s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 172s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 172s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 172s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 172s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 172s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 172s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 172s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 172s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 172s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 172s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 172s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 172s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 172s Get:218 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 173s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 173s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 173s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 173s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 173s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 173s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 173s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 173s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 173s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 173s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 173s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 173s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 173s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 173s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 175s Preconfiguring packages ... 175s Fetched 272 MB in 9s (31.2 MB/s) 175s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 175s wget depends on libpsl5 (>= 0.16.0). 175s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 175s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 175s 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 176s Removing libpsl5:arm64 (0.21.2-1build1) ... 176s Selecting previously unselected package libpsl5t64:arm64. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 176s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 176s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 176s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 176s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 176s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 176s Selecting previously unselected package libcurl4t64:arm64. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 176s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 176s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 176s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 176s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 176s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 176s 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 176s Removing libpng16-16:arm64 (1.6.43-1) ... 176s Selecting previously unselected package libpng16-16t64:arm64. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 176s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 176s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 176s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 176s parted depends on libreadline8 (>= 6.0). 176s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 176s gpgsm depends on libreadline8 (>= 6.0). 176s gpgconf depends on libreadline8 (>= 6.0). 176s gpg depends on libreadline8 (>= 6.0). 176s gawk depends on libreadline8 (>= 6.0). 176s fdisk depends on libreadline8 (>= 6.0). 176s 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 176s Removing libreadline8:arm64 (8.2-3) ... 176s Selecting previously unselected package libreadline8t64:arm64. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 176s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 177s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 177s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 177s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 177s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 177s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 177s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 177s lsof depends on libtirpc3 (>= 1.0.2). 177s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 177s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 177s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 177s iproute2 depends on libtirpc3 (>= 1.0.2). 177s 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 177s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 177s Selecting previously unselected package libtirpc3t64:arm64. 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 177s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 177s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 177s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 177s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 177s Selecting previously unselected package libc-dev-bin. 177s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 177s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 177s Selecting previously unselected package linux-libc-dev:arm64. 177s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 177s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 177s Selecting previously unselected package libcrypt-dev:arm64. 177s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 177s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 177s Selecting previously unselected package libtirpc-dev:arm64. 177s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 177s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 177s Selecting previously unselected package libnsl-dev:arm64. 177s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 177s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 177s Selecting previously unselected package rpcsvc-proto. 177s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 177s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 177s Selecting previously unselected package libc6-dev:arm64. 177s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 177s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 178s Selecting previously unselected package libisl23:arm64. 178s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 178s Unpacking libisl23:arm64 (0.26-3) ... 178s Selecting previously unselected package libmpc3:arm64. 178s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 178s Unpacking libmpc3:arm64 (1.3.1-1) ... 178s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 178s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 178s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 178s Selecting previously unselected package cpp-13. 178s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 178s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 178s Selecting previously unselected package cpp-aarch64-linux-gnu. 178s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 178s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 178s Selecting previously unselected package cpp. 178s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 178s Unpacking cpp (4:13.2.0-7ubuntu1) ... 178s Selecting previously unselected package libcc1-0:arm64. 178s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 178s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 178s Selecting previously unselected package libgomp1:arm64. 178s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 178s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 178s Selecting previously unselected package libitm1:arm64. 178s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 178s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 178s Selecting previously unselected package libatomic1:arm64. 178s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 178s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 178s Selecting previously unselected package libasan8:arm64. 178s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 178s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 178s Selecting previously unselected package liblsan0:arm64. 178s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 178s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 178s Selecting previously unselected package libtsan2:arm64. 178s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 178s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 178s Selecting previously unselected package libubsan1:arm64. 178s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 178s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 178s Selecting previously unselected package libhwasan0:arm64. 178s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 178s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 179s Selecting previously unselected package libgcc-13-dev:arm64. 179s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 179s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 179s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 179s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 179s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 179s Selecting previously unselected package gcc-13. 179s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 179s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 179s Selecting previously unselected package gcc-aarch64-linux-gnu. 179s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 179s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 179s Selecting previously unselected package gcc. 179s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 179s Unpacking gcc (4:13.2.0-7ubuntu1) ... 179s Selecting previously unselected package libstdc++-13-dev:arm64. 179s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 179s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 179s Selecting previously unselected package g++-13-aarch64-linux-gnu. 179s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 179s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 180s Selecting previously unselected package g++-13. 180s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 180s Unpacking g++-13 (13.2.0-17ubuntu2) ... 180s Selecting previously unselected package g++-aarch64-linux-gnu. 180s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 180s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 180s Selecting previously unselected package g++. 180s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 180s Unpacking g++ (4:13.2.0-7ubuntu1) ... 180s Selecting previously unselected package build-essential. 180s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 180s Unpacking build-essential (12.10ubuntu1) ... 180s Selecting previously unselected package dctrl-tools. 180s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 180s Unpacking dctrl-tools (2.24-3build2) ... 180s Selecting previously unselected package fonts-dejavu-mono. 180s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 180s Unpacking fonts-dejavu-mono (2.37-8) ... 180s Selecting previously unselected package fonts-dejavu-core. 180s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 180s Unpacking fonts-dejavu-core (2.37-8) ... 180s Selecting previously unselected package fontconfig-config. 180s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 181s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 181s Selecting previously unselected package libfontconfig1:arm64. 181s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 181s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 181s Selecting previously unselected package fontconfig. 181s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 181s Unpacking fontconfig (2.15.0-1ubuntu1) ... 181s Selecting previously unselected package fonts-glyphicons-halflings. 181s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 181s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 181s Selecting previously unselected package fonts-mathjax. 181s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 181s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 181s Selecting previously unselected package libgfortran5:arm64. 181s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 181s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 181s Selecting previously unselected package libgfortran-13-dev:arm64. 181s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 181s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 181s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 181s Preparing to unpack .../044-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 181s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 181s Selecting previously unselected package gfortran-13. 181s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 181s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 181s Selecting previously unselected package gfortran-aarch64-linux-gnu. 181s Preparing to unpack .../046-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 181s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 181s Selecting previously unselected package gfortran. 181s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 181s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 181s Selecting previously unselected package icu-devtools. 181s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_arm64.deb ... 181s Unpacking icu-devtools (74.2-1ubuntu1) ... 181s Selecting previously unselected package libblas3:arm64. 181s Preparing to unpack .../049-libblas3_3.12.0-3_arm64.deb ... 181s Unpacking libblas3:arm64 (3.12.0-3) ... 181s Selecting previously unselected package libblas-dev:arm64. 181s Preparing to unpack .../050-libblas-dev_3.12.0-3_arm64.deb ... 181s Unpacking libblas-dev:arm64 (3.12.0-3) ... 181s Selecting previously unselected package libboost1.83-dev:arm64. 181s Preparing to unpack .../051-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 181s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 183s Selecting previously unselected package libboost-dev:arm64. 183s Preparing to unpack .../052-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 183s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 183s Selecting previously unselected package libbz2-dev:arm64. 183s Preparing to unpack .../053-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 183s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 183s Selecting previously unselected package libpixman-1-0:arm64. 183s Preparing to unpack .../054-libpixman-1-0_0.42.2-1_arm64.deb ... 183s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 183s Selecting previously unselected package libxcb-render0:arm64. 183s Preparing to unpack .../055-libxcb-render0_1.15-1_arm64.deb ... 183s Unpacking libxcb-render0:arm64 (1.15-1) ... 183s Selecting previously unselected package libxcb-shm0:arm64. 183s Preparing to unpack .../056-libxcb-shm0_1.15-1_arm64.deb ... 183s Unpacking libxcb-shm0:arm64 (1.15-1) ... 183s Selecting previously unselected package libxrender1:arm64. 183s Preparing to unpack .../057-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 183s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 183s Selecting previously unselected package libcairo2:arm64. 183s Preparing to unpack .../058-libcairo2_1.18.0-1_arm64.deb ... 183s Unpacking libcairo2:arm64 (1.18.0-1) ... 183s Selecting previously unselected package libdatrie1:arm64. 183s Preparing to unpack .../059-libdatrie1_0.2.13-3_arm64.deb ... 183s Unpacking libdatrie1:arm64 (0.2.13-3) ... 183s Selecting previously unselected package libdeflate0:arm64. 183s Preparing to unpack .../060-libdeflate0_1.19-1_arm64.deb ... 183s Unpacking libdeflate0:arm64 (1.19-1) ... 183s Selecting previously unselected package libgraphite2-3:arm64. 184s Preparing to unpack .../061-libgraphite2-3_1.3.14-2_arm64.deb ... 184s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 184s Selecting previously unselected package libharfbuzz0b:arm64. 184s Preparing to unpack .../062-libharfbuzz0b_8.3.0-2_arm64.deb ... 184s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 184s Selecting previously unselected package x11-common. 184s Preparing to unpack .../063-x11-common_1%3a7.7+23ubuntu2_all.deb ... 184s Unpacking x11-common (1:7.7+23ubuntu2) ... 184s Selecting previously unselected package libice6:arm64. 184s Preparing to unpack .../064-libice6_2%3a1.0.10-1build2_arm64.deb ... 184s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 184s Selecting previously unselected package libicu-dev:arm64. 184s Preparing to unpack .../065-libicu-dev_74.2-1ubuntu1_arm64.deb ... 184s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 184s Selecting previously unselected package libjpeg-turbo8:arm64. 184s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 184s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 184s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 184s Preparing to unpack .../067-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 184s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 184s Selecting previously unselected package libjpeg8:arm64. 184s Preparing to unpack .../068-libjpeg8_8c-2ubuntu11_arm64.deb ... 184s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 184s Selecting previously unselected package libjpeg8-dev:arm64. 184s Preparing to unpack .../069-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 184s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 184s Selecting previously unselected package libjpeg-dev:arm64. 184s Preparing to unpack .../070-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 184s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 184s Selecting previously unselected package libjs-bootstrap. 184s Preparing to unpack .../071-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 184s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 185s Selecting previously unselected package libjs-highlight.js. 185s Preparing to unpack .../072-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 185s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 185s Selecting previously unselected package libjs-jquery. 185s Preparing to unpack .../073-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 185s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 185s Selecting previously unselected package libjs-jquery-datatables. 185s Preparing to unpack .../074-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 185s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 185s Selecting previously unselected package liblapack3:arm64. 185s Preparing to unpack .../075-liblapack3_3.12.0-3_arm64.deb ... 185s Unpacking liblapack3:arm64 (3.12.0-3) ... 185s Selecting previously unselected package liblapack-dev:arm64. 185s Preparing to unpack .../076-liblapack-dev_3.12.0-3_arm64.deb ... 185s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 185s Selecting previously unselected package liblerc4:arm64. 185s Preparing to unpack .../077-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 185s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 185s Selecting previously unselected package libncurses-dev:arm64. 185s Preparing to unpack .../078-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 185s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 185s Selecting previously unselected package libthai-data. 185s Preparing to unpack .../079-libthai-data_0.1.29-2_all.deb ... 185s Unpacking libthai-data (0.1.29-2) ... 185s Selecting previously unselected package libthai0:arm64. 185s Preparing to unpack .../080-libthai0_0.1.29-2_arm64.deb ... 185s Unpacking libthai0:arm64 (0.1.29-2) ... 185s Selecting previously unselected package libpango-1.0-0:arm64. 185s Preparing to unpack .../081-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 185s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 185s Selecting previously unselected package libpangoft2-1.0-0:arm64. 185s Preparing to unpack .../082-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 185s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 185s Selecting previously unselected package libpangocairo-1.0-0:arm64. 185s Preparing to unpack .../083-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 185s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 185s Selecting previously unselected package libpaper1:arm64. 185s Preparing to unpack .../084-libpaper1_1.1.29_arm64.deb ... 185s Unpacking libpaper1:arm64 (1.1.29) ... 185s Selecting previously unselected package libpaper-utils. 185s Preparing to unpack .../085-libpaper-utils_1.1.29_arm64.deb ... 185s Unpacking libpaper-utils (1.1.29) ... 185s Selecting previously unselected package libpcre2-16-0:arm64. 185s Preparing to unpack .../086-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 185s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 185s Selecting previously unselected package libpcre2-32-0:arm64. 185s Preparing to unpack .../087-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 185s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 185s Selecting previously unselected package libpcre2-posix3:arm64. 186s Preparing to unpack .../088-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 186s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 186s Selecting previously unselected package libpcre2-dev:arm64. 186s Preparing to unpack .../089-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 186s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 186s Selecting previously unselected package libpkgconf3:arm64. 186s Preparing to unpack .../090-libpkgconf3_1.8.1-2_arm64.deb ... 186s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 186s Selecting previously unselected package zlib1g-dev:arm64. 186s Preparing to unpack .../091-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 186s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 186s Selecting previously unselected package libpng-dev:arm64. 186s Preparing to unpack .../092-libpng-dev_1.6.43-3_arm64.deb ... 186s Unpacking libpng-dev:arm64 (1.6.43-3) ... 186s Selecting previously unselected package libreadline-dev:arm64. 186s Preparing to unpack .../093-libreadline-dev_8.2-3.1_arm64.deb ... 186s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 186s Selecting previously unselected package libsharpyuv0:arm64. 186s Preparing to unpack .../094-libsharpyuv0_1.3.2-0.4_arm64.deb ... 186s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 186s Selecting previously unselected package libsm6:arm64. 186s Preparing to unpack .../095-libsm6_2%3a1.2.3-1build2_arm64.deb ... 186s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 186s Selecting previously unselected package libtcl8.6:arm64. 186s Preparing to unpack .../096-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 186s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 186s Selecting previously unselected package libjbig0:arm64. 186s Preparing to unpack .../097-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 186s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 186s Selecting previously unselected package libwebp7:arm64. 186s Preparing to unpack .../098-libwebp7_1.3.2-0.4_arm64.deb ... 186s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 186s Selecting previously unselected package libtiff6:arm64. 186s Preparing to unpack .../099-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 186s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 186s Selecting previously unselected package libxft2:arm64. 186s Preparing to unpack .../100-libxft2_2.3.6-1_arm64.deb ... 186s Unpacking libxft2:arm64 (2.3.6-1) ... 186s Selecting previously unselected package libxss1:arm64. 186s Preparing to unpack .../101-libxss1_1%3a1.2.3-1build2_arm64.deb ... 186s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 186s Selecting previously unselected package libtk8.6:arm64. 186s Preparing to unpack .../102-libtk8.6_8.6.13-2_arm64.deb ... 186s Unpacking libtk8.6:arm64 (8.6.13-2) ... 186s Selecting previously unselected package libxt6t64:arm64. 186s Preparing to unpack .../103-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 186s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 186s Selecting previously unselected package zip. 186s Preparing to unpack .../104-zip_3.0-13_arm64.deb ... 186s Unpacking zip (3.0-13) ... 186s Selecting previously unselected package unzip. 186s Preparing to unpack .../105-unzip_6.0-28ubuntu3_arm64.deb ... 186s Unpacking unzip (6.0-28ubuntu3) ... 186s Selecting previously unselected package xdg-utils. 187s Preparing to unpack .../106-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 187s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 187s Selecting previously unselected package r-base-core. 187s Preparing to unpack .../107-r-base-core_4.3.3-2build1_arm64.deb ... 187s Unpacking r-base-core (4.3.3-2build1) ... 187s Selecting previously unselected package r-cran-littler. 187s Preparing to unpack .../108-r-cran-littler_0.3.19-1_arm64.deb ... 187s Unpacking r-cran-littler (0.3.19-1) ... 187s Selecting previously unselected package littler. 187s Preparing to unpack .../109-littler_0.3.19-1_all.deb ... 187s Unpacking littler (0.3.19-1) ... 187s Selecting previously unselected package node-normalize.css. 187s Preparing to unpack .../110-node-normalize.css_8.0.1-5_all.deb ... 187s Unpacking node-normalize.css (8.0.1-5) ... 187s Selecting previously unselected package pkgconf-bin. 187s Preparing to unpack .../111-pkgconf-bin_1.8.1-2_arm64.deb ... 187s Unpacking pkgconf-bin (1.8.1-2) ... 187s Selecting previously unselected package pkgconf:arm64. 187s Preparing to unpack .../112-pkgconf_1.8.1-2_arm64.deb ... 187s Unpacking pkgconf:arm64 (1.8.1-2) ... 187s Selecting previously unselected package pkg-config:arm64. 187s Preparing to unpack .../113-pkg-config_1.8.1-2_arm64.deb ... 187s Unpacking pkg-config:arm64 (1.8.1-2) ... 187s Selecting previously unselected package liblzma-dev:arm64. 187s Preparing to unpack .../114-liblzma-dev_5.4.5-0.3_arm64.deb ... 187s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 187s Selecting previously unselected package r-base-dev. 187s Preparing to unpack .../115-r-base-dev_4.3.3-2build1_all.deb ... 187s Unpacking r-base-dev (4.3.3-2build1) ... 187s Selecting previously unselected package pkg-r-autopkgtest. 187s Preparing to unpack .../116-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 187s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 187s Selecting previously unselected package r-bioc-biocgenerics. 187s Preparing to unpack .../117-r-bioc-biocgenerics_0.48.1-2_all.deb ... 187s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 187s Selecting previously unselected package r-bioc-biobase. 187s Preparing to unpack .../118-r-bioc-biobase_2.62.0-1_arm64.deb ... 187s Unpacking r-bioc-biobase (2.62.0-1) ... 187s Selecting previously unselected package r-bioc-s4vectors. 188s Preparing to unpack .../119-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 188s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 188s Selecting previously unselected package r-bioc-iranges. 188s Preparing to unpack .../120-r-bioc-iranges_2.36.0-1_arm64.deb ... 188s Unpacking r-bioc-iranges (2.36.0-1) ... 188s Selecting previously unselected package r-cran-dbi. 188s Preparing to unpack .../121-r-cran-dbi_1.2.2-1_all.deb ... 188s Unpacking r-cran-dbi (1.2.2-1) ... 188s Selecting previously unselected package r-cran-bit. 188s Preparing to unpack .../122-r-cran-bit_4.0.5-1_arm64.deb ... 188s Unpacking r-cran-bit (4.0.5-1) ... 188s Selecting previously unselected package r-cran-bit64. 188s Preparing to unpack .../123-r-cran-bit64_4.0.5-1_arm64.deb ... 188s Unpacking r-cran-bit64 (4.0.5-1) ... 188s Selecting previously unselected package r-cran-rlang. 188s Preparing to unpack .../124-r-cran-rlang_1.1.3-1_arm64.deb ... 188s Unpacking r-cran-rlang (1.1.3-1) ... 188s Selecting previously unselected package r-cran-cli. 188s Preparing to unpack .../125-r-cran-cli_3.6.2-1_arm64.deb ... 188s Unpacking r-cran-cli (3.6.2-1) ... 188s Selecting previously unselected package r-cran-glue. 188s Preparing to unpack .../126-r-cran-glue_1.7.0-1_arm64.deb ... 188s Unpacking r-cran-glue (1.7.0-1) ... 188s Selecting previously unselected package r-cran-lifecycle. 188s Preparing to unpack .../127-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 188s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 188s Selecting previously unselected package r-cran-vctrs. 188s Preparing to unpack .../128-r-cran-vctrs_0.6.5-1_arm64.deb ... 188s Unpacking r-cran-vctrs (0.6.5-1) ... 188s Selecting previously unselected package r-cran-blob. 189s Preparing to unpack .../129-r-cran-blob_1.2.4-1_all.deb ... 189s Unpacking r-cran-blob (1.2.4-1) ... 189s Selecting previously unselected package r-cran-fastmap. 189s Preparing to unpack .../130-r-cran-fastmap_1.1.1-1_arm64.deb ... 189s Unpacking r-cran-fastmap (1.1.1-1) ... 189s Selecting previously unselected package r-cran-cachem. 189s Preparing to unpack .../131-r-cran-cachem_1.0.8-1_arm64.deb ... 189s Unpacking r-cran-cachem (1.0.8-1) ... 189s Selecting previously unselected package r-cran-memoise. 189s Preparing to unpack .../132-r-cran-memoise_2.0.1-1_all.deb ... 189s Unpacking r-cran-memoise (2.0.1-1) ... 189s Selecting previously unselected package r-cran-pkgconfig. 189s Preparing to unpack .../133-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 189s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 189s Selecting previously unselected package r-cran-plogr. 190s Preparing to unpack .../134-r-cran-plogr_0.2.0-3build1_all.deb ... 190s Unpacking r-cran-plogr (0.2.0-3build1) ... 190s Selecting previously unselected package r-cran-cpp11. 190s Preparing to unpack .../135-r-cran-cpp11_0.4.7-1_all.deb ... 190s Unpacking r-cran-cpp11 (0.4.7-1) ... 190s Selecting previously unselected package r-cran-rsqlite. 190s Preparing to unpack .../136-r-cran-rsqlite_2.3.4-1_arm64.deb ... 190s Unpacking r-cran-rsqlite (2.3.4-1) ... 190s Selecting previously unselected package r-cran-curl. 191s Preparing to unpack .../137-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 191s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 191s Selecting previously unselected package r-cran-jsonlite. 191s Preparing to unpack .../138-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 191s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 191s Selecting previously unselected package r-cran-mime. 191s Preparing to unpack .../139-r-cran-mime_0.12-1_arm64.deb ... 191s Unpacking r-cran-mime (0.12-1) ... 191s Selecting previously unselected package r-cran-sys. 191s Preparing to unpack .../140-r-cran-sys_3.4.2-1_arm64.deb ... 191s Unpacking r-cran-sys (3.4.2-1) ... 191s Selecting previously unselected package r-cran-askpass. 191s Preparing to unpack .../141-r-cran-askpass_1.2.0-1_arm64.deb ... 191s Unpacking r-cran-askpass (1.2.0-1) ... 192s Selecting previously unselected package r-cran-openssl. 192s Preparing to unpack .../142-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 192s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 192s Selecting previously unselected package r-cran-r6. 192s Preparing to unpack .../143-r-cran-r6_2.5.1-1_all.deb ... 192s Unpacking r-cran-r6 (2.5.1-1) ... 192s Selecting previously unselected package r-cran-httr. 192s Preparing to unpack .../144-r-cran-httr_1.4.7+dfsg-1_all.deb ... 192s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 192s Selecting previously unselected package r-cran-png. 192s Preparing to unpack .../145-r-cran-png_0.1-8-1_arm64.deb ... 192s Unpacking r-cran-png (0.1-8-1) ... 192s Selecting previously unselected package r-bioc-zlibbioc. 193s Preparing to unpack .../146-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 193s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 193s Selecting previously unselected package r-bioc-xvector. 193s Preparing to unpack .../147-r-bioc-xvector_0.42.0-1_arm64.deb ... 193s Unpacking r-bioc-xvector (0.42.0-1) ... 193s Selecting previously unselected package r-cran-bitops. 193s Preparing to unpack .../148-r-cran-bitops_1.0-7-1_arm64.deb ... 193s Unpacking r-cran-bitops (1.0-7-1) ... 193s Selecting previously unselected package r-cran-rcurl. 193s Preparing to unpack .../149-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 193s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 193s Selecting previously unselected package r-bioc-genomeinfodbdata. 193s Preparing to unpack .../150-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 193s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 193s Selecting previously unselected package r-bioc-genomeinfodb. 193s Preparing to unpack .../151-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 193s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 194s Selecting previously unselected package r-cran-crayon. 194s Preparing to unpack .../152-r-cran-crayon_1.5.2-1_all.deb ... 194s Unpacking r-cran-crayon (1.5.2-1) ... 194s Selecting previously unselected package r-bioc-biostrings. 194s Preparing to unpack .../153-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 194s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 194s Selecting previously unselected package r-bioc-keggrest. 195s Preparing to unpack .../154-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 195s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 195s Selecting previously unselected package r-bioc-annotationdbi. 195s Preparing to unpack .../155-r-bioc-annotationdbi_1.64.1-1_all.deb ... 195s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 195s Selecting previously unselected package r-cran-xml. 195s Preparing to unpack .../156-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 195s Unpacking r-cran-xml (3.99-0.16.1-1) ... 195s Selecting previously unselected package r-cran-xtable. 195s Preparing to unpack .../157-r-cran-xtable_1%3a1.8-4-2_all.deb ... 195s Unpacking r-cran-xtable (1:1.8-4-2) ... 195s Selecting previously unselected package r-bioc-annotate. 195s Preparing to unpack .../158-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 195s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 195s Selecting previously unselected package r-bioc-genomicranges. 195s Preparing to unpack .../159-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 195s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 196s Selecting previously unselected package r-cran-rcolorbrewer. 196s Preparing to unpack .../160-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 196s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 196s Selecting previously unselected package r-cran-lattice. 196s Preparing to unpack .../161-r-cran-lattice_0.22-5-1_arm64.deb ... 196s Unpacking r-cran-lattice (0.22-5-1) ... 196s Selecting previously unselected package r-cran-nlme. 196s Preparing to unpack .../162-r-cran-nlme_3.1.164-1_arm64.deb ... 196s Unpacking r-cran-nlme (3.1.164-1) ... 196s Selecting previously unselected package r-cran-matrix. 196s Preparing to unpack .../163-r-cran-matrix_1.6-5-1_arm64.deb ... 196s Unpacking r-cran-matrix (1.6-5-1) ... 196s Selecting previously unselected package r-cran-mgcv. 196s Preparing to unpack .../164-r-cran-mgcv_1.9-1-1_arm64.deb ... 196s Unpacking r-cran-mgcv (1.9-1-1) ... 196s Selecting previously unselected package r-cran-matrixstats. 196s Preparing to unpack .../165-r-cran-matrixstats_1.2.0-1_arm64.deb ... 196s Unpacking r-cran-matrixstats (1.2.0-1) ... 196s Selecting previously unselected package r-bioc-matrixgenerics. 196s Preparing to unpack .../166-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 196s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 196s Selecting previously unselected package r-cran-survival. 196s Preparing to unpack .../167-r-cran-survival_3.5-8-1_arm64.deb ... 196s Unpacking r-cran-survival (3.5-8-1) ... 197s Selecting previously unselected package r-bioc-genefilter. 197s Preparing to unpack .../168-r-bioc-genefilter_1.84.0-1_arm64.deb ... 197s Unpacking r-bioc-genefilter (1.84.0-1) ... 197s Selecting previously unselected package r-cran-formatr. 197s Preparing to unpack .../169-r-cran-formatr_1.14-1_all.deb ... 197s Unpacking r-cran-formatr (1.14-1) ... 197s Selecting previously unselected package r-cran-lambda.r. 197s Preparing to unpack .../170-r-cran-lambda.r_1.2.4-2build1_all.deb ... 197s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 197s Selecting previously unselected package r-cran-futile.options. 197s Preparing to unpack .../171-r-cran-futile.options_1.0.1-3build1_all.deb ... 197s Unpacking r-cran-futile.options (1.0.1-3build1) ... 197s Selecting previously unselected package r-cran-futile.logger. 197s Preparing to unpack .../172-r-cran-futile.logger_1.4.3-4build1_all.deb ... 197s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 197s Selecting previously unselected package r-cran-snow. 197s Preparing to unpack .../173-r-cran-snow_1%3a0.4.4-2_all.deb ... 197s Unpacking r-cran-snow (1:0.4.4-2) ... 197s Selecting previously unselected package r-cran-codetools. 197s Preparing to unpack .../174-r-cran-codetools_0.2-19-1_all.deb ... 197s Unpacking r-cran-codetools (0.2-19-1) ... 197s Selecting previously unselected package r-cran-bh. 197s Preparing to unpack .../175-r-cran-bh_1.84.0-1_all.deb ... 197s Unpacking r-cran-bh (1.84.0-1) ... 197s Selecting previously unselected package r-bioc-biocparallel. 197s Preparing to unpack .../176-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 197s Unpacking r-bioc-biocparallel (1.36.0-1) ... 197s Selecting previously unselected package r-cran-statmod. 197s Preparing to unpack .../177-r-cran-statmod_1.5.0-1_arm64.deb ... 197s Unpacking r-cran-statmod (1.5.0-1) ... 197s Selecting previously unselected package r-bioc-limma. 197s Preparing to unpack .../178-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 197s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 197s Selecting previously unselected package r-cran-locfit. 197s Preparing to unpack .../179-r-cran-locfit_1.5-9.8-1_arm64.deb ... 197s Unpacking r-cran-locfit (1.5-9.8-1) ... 197s Selecting previously unselected package r-cran-pkgkitten. 197s Preparing to unpack .../180-r-cran-pkgkitten_0.2.3-1_all.deb ... 197s Unpacking r-cran-pkgkitten (0.2.3-1) ... 197s Selecting previously unselected package r-cran-rcpp. 197s Preparing to unpack .../181-r-cran-rcpp_1.0.12-1_arm64.deb ... 197s Unpacking r-cran-rcpp (1.0.12-1) ... 197s Selecting previously unselected package r-bioc-edger. 197s Preparing to unpack .../182-r-bioc-edger_4.0.16+dfsg-1_arm64.deb ... 197s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 197s Selecting previously unselected package r-bioc-sva. 198s Preparing to unpack .../183-r-bioc-sva_3.50.0-1_arm64.deb ... 198s Unpacking r-bioc-sva (3.50.0-1) ... 198s Selecting previously unselected package r-bioc-rhtslib. 198s Preparing to unpack .../184-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 198s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 198s Selecting previously unselected package r-bioc-rsamtools. 198s Preparing to unpack .../185-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 198s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 198s Selecting previously unselected package r-cran-abind. 198s Preparing to unpack .../186-r-cran-abind_1.4-5-2_all.deb ... 198s Unpacking r-cran-abind (1.4-5-2) ... 198s Selecting previously unselected package r-bioc-s4arrays. 198s Preparing to unpack .../187-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 198s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 198s Selecting previously unselected package r-bioc-sparsearray. 198s Preparing to unpack .../188-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 198s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 198s Selecting previously unselected package r-bioc-delayedarray. 198s Preparing to unpack .../189-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 198s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 198s Selecting previously unselected package r-bioc-summarizedexperiment. 198s Preparing to unpack .../190-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 198s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 198s Selecting previously unselected package r-bioc-genomicalignments. 198s Preparing to unpack .../191-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 198s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 198s Selecting previously unselected package r-bioc-biocio. 199s Preparing to unpack .../192-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 199s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 199s Selecting previously unselected package r-cran-rjson. 199s Preparing to unpack .../193-r-cran-rjson_0.2.21-1_arm64.deb ... 199s Unpacking r-cran-rjson (0.2.21-1) ... 199s Selecting previously unselected package r-cran-yaml. 199s Preparing to unpack .../194-r-cran-yaml_2.3.8-1_arm64.deb ... 199s Unpacking r-cran-yaml (2.3.8-1) ... 199s Selecting previously unselected package r-cran-restfulr. 199s Preparing to unpack .../195-r-cran-restfulr_0.0.15-1_arm64.deb ... 199s Unpacking r-cran-restfulr (0.0.15-1) ... 199s Selecting previously unselected package r-bioc-rtracklayer. 199s Preparing to unpack .../196-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 199s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 199s Selecting previously unselected package r-bioc-ballgown. 199s Preparing to unpack .../197-r-bioc-ballgown_2.34.0+dfsg-1_all.deb ... 199s Unpacking r-bioc-ballgown (2.34.0+dfsg-1) ... 199s Selecting previously unselected package r-cran-brio. 199s Preparing to unpack .../198-r-cran-brio_1.1.4-1_arm64.deb ... 199s Unpacking r-cran-brio (1.1.4-1) ... 199s Selecting previously unselected package r-cran-ps. 199s Preparing to unpack .../199-r-cran-ps_1.7.6-1_arm64.deb ... 199s Unpacking r-cran-ps (1.7.6-1) ... 199s Selecting previously unselected package r-cran-processx. 199s Preparing to unpack .../200-r-cran-processx_3.8.3-1_arm64.deb ... 199s Unpacking r-cran-processx (3.8.3-1) ... 199s Selecting previously unselected package r-cran-callr. 199s Preparing to unpack .../201-r-cran-callr_3.7.3-2_all.deb ... 199s Unpacking r-cran-callr (3.7.3-2) ... 200s Selecting previously unselected package r-cran-commonmark. 200s Preparing to unpack .../202-r-cran-commonmark_1.9.1-1_arm64.deb ... 200s Unpacking r-cran-commonmark (1.9.1-1) ... 200s Selecting previously unselected package r-cran-desc. 200s Preparing to unpack .../203-r-cran-desc_1.4.3-1_all.deb ... 200s Unpacking r-cran-desc (1.4.3-1) ... 200s Selecting previously unselected package r-cran-diffobj. 200s Preparing to unpack .../204-r-cran-diffobj_0.3.5-1_arm64.deb ... 200s Unpacking r-cran-diffobj (0.3.5-1) ... 200s Selecting previously unselected package r-cran-digest. 200s Preparing to unpack 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libjs-mathjax. 201s Preparing to unpack .../211-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 201s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 201s Selecting previously unselected package r-cran-knitr. 202s Preparing to unpack .../212-r-cran-knitr_1.45+dfsg-1_all.deb ... 202s Unpacking r-cran-knitr (1.45+dfsg-1) ... 202s Selecting previously unselected package r-cran-magrittr. 202s Preparing to unpack .../213-r-cran-magrittr_2.0.3-1_arm64.deb ... 202s Unpacking r-cran-magrittr (2.0.3-1) ... 202s Selecting previously unselected package r-cran-markdown. 202s Preparing to unpack .../214-r-cran-markdown_1.12+dfsg-1_all.deb ... 202s Unpacking r-cran-markdown (1.12+dfsg-1) ... 202s Selecting previously unselected package r-cran-utf8. 202s Preparing to unpack .../215-r-cran-utf8_1.2.4-1_arm64.deb ... 202s Unpacking r-cran-utf8 (1.2.4-1) ... 202s Selecting previously unselected package r-cran-pillar. 202s Preparing to unpack .../216-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 202s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 202s Selecting previously unselected package r-cran-pkgbuild. 202s Preparing to unpack .../217-r-cran-pkgbuild_1.4.3-1_all.deb ... 202s Unpacking r-cran-pkgbuild (1.4.3-1) ... 202s Selecting previously unselected package r-cran-rprojroot. 203s Preparing to unpack .../218-r-cran-rprojroot_2.0.4-1_all.deb ... 203s Unpacking r-cran-rprojroot (2.0.4-1) ... 203s Selecting previously unselected package r-cran-withr. 203s Preparing to unpack .../219-r-cran-withr_2.5.0-1_all.deb ... 203s Unpacking r-cran-withr (2.5.0-1) ... 203s Selecting previously unselected package r-cran-pkgload. 203s Preparing to unpack .../220-r-cran-pkgload_1.3.4-1_all.deb ... 203s Unpacking r-cran-pkgload (1.3.4-1) ... 203s Selecting previously unselected package r-cran-praise. 203s Preparing to unpack .../221-r-cran-praise_1.0.0-4build1_all.deb ... 203s Unpacking r-cran-praise (1.0.0-4build1) ... 203s Selecting previously unselected package r-cran-tibble. 203s Preparing to unpack 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(1.1.3-1) ... 207s Setting up r-cran-matrixstats (1.2.0-1) ... 207s Setting up littler (0.3.19-1) ... 207s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 207s Setting up r-cran-xfun (0.41+dfsg-1) ... 207s Setting up r-cran-sys (3.4.2-1) ... 207s Setting up r-cran-plogr (0.2.0-3build1) ... 207s Setting up r-cran-withr (2.5.0-1) ... 207s Setting up r-cran-processx (3.8.3-1) ... 207s Setting up r-cran-mime (0.12-1) ... 207s Setting up r-cran-praise (1.0.0-4build1) ... 207s Setting up r-cran-abind (1.4-5-2) ... 207s Setting up r-cran-digest (0.6.34-1) ... 207s Setting up r-cran-yaml (2.3.8-1) ... 207s Setting up r-cran-lambda.r (1.2.4-2build1) ... 207s Setting up r-cran-evaluate (0.23-1) ... 207s Setting up r-cran-dbi (1.2.2-1) ... 207s Setting up r-cran-highr (0.10+dfsg-1) ... 207s Setting up r-cran-fansi (1.0.5-1) ... 207s Setting up r-cran-snow (1:0.4.4-2) ... 207s Setting up r-cran-glue (1.7.0-1) ... 207s Setting up r-cran-bit (4.0.5-1) ... 207s Setting up r-cran-xtable (1:1.8-4-2) ... 207s Setting up r-cran-cli (3.6.2-1) ... 207s Setting up gfortran (4:13.2.0-7ubuntu1) ... 207s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 207s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 207s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 207s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 207s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 207s Setting up r-cran-bitops (1.0-7-1) ... 207s Setting up r-cran-rprojroot (2.0.4-1) ... 207s Setting up r-cran-bit64 (4.0.5-1) ... 207s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 207s Setting up r-cran-askpass (1.2.0-1) ... 207s Setting up r-cran-fastmap (1.1.1-1) ... 207s Setting up r-cran-png (0.1-8-1) ... 207s Setting up r-bioc-biobase (2.62.0-1) ... 207s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 207s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 207s Setting up r-cran-utf8 (1.2.4-1) ... 207s Setting up r-cran-markdown (1.12+dfsg-1) ... 207s Setting up r-cran-cpp11 (0.4.7-1) ... 207s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 207s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 207s Setting up r-cran-futile.logger (1.4.3-4build1) ... 207s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 207s Setting up r-cran-matrix (1.6-5-1) ... 207s Setting up r-cran-knitr (1.45+dfsg-1) ... 207s Setting up r-cran-mgcv (1.9-1-1) ... 207s Setting up g++ (4:13.2.0-7ubuntu1) ... 207s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 207s Setting up r-cran-cachem (1.0.8-1) ... 207s Setting up build-essential (12.10ubuntu1) ... 207s Setting up r-bioc-iranges (2.36.0-1) ... 207s Setting up r-cran-rjson (0.2.21-1) ... 207s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 207s Setting up r-cran-restfulr (0.0.15-1) ... 207s Setting up r-cran-vctrs (0.6.5-1) ... 207s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 207s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 207s Setting up r-base-dev (4.3.3-2build1) ... 207s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 207s Setting up r-bioc-biocparallel (1.36.0-1) ... 207s Setting up r-cran-callr (3.7.3-2) ... 207s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 207s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 207s Setting up r-cran-desc (1.4.3-1) ... 207s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 207s Setting up r-cran-survival (3.5-8-1) ... 207s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 207s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 207s Setting up r-cran-httr (1.4.7+dfsg-1) ... 207s Setting up r-cran-memoise (2.0.1-1) ... 207s Setting up r-cran-blob (1.2.4-1) ... 207s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 207s Setting up r-bioc-xvector (0.42.0-1) ... 207s Setting up r-cran-pkgbuild (1.4.3-1) ... 207s Setting up r-cran-rsqlite (2.3.4-1) ... 207s Setting up r-cran-pkgload (1.3.4-1) ... 207s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 207s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 207s Setting up r-cran-rematch2 (2.1.2-2build1) ... 207s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 207s Setting up r-cran-waldo (0.5.2-1build1) ... 207s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 207s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 207s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 207s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 207s Setting up r-bioc-annotationdbi (1.64.1-1) ... 207s Setting up r-cran-testthat (3.2.1-1) ... 207s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 207s Setting up r-bioc-genefilter (1.84.0-1) ... 207s Setting up r-bioc-genomicalignments (1.38.2-1) ... 207s Setting up r-bioc-rtracklayer (1.62.0-1) ... 207s Setting up r-bioc-sva (3.50.0-1) ... 207s Setting up r-bioc-ballgown (2.34.0+dfsg-1) ... 207s Setting up autopkgtest-satdep (0) ... 207s Processing triggers for man-db (2.12.0-3) ... 208s Processing triggers for install-info (7.1-3) ... 209s Processing triggers for libc-bin (2.39-0ubuntu2) ... 222s (Reading database ... 111467 files and directories currently installed.) 222s Removing autopkgtest-satdep (0) ... 223s autopkgtest [17:24:05]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 223s autopkgtest [17:24:05]: test pkg-r-autopkgtest: [----------------------- 224s Test: Try to load the R library ballgown 225s 225s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 225s Copyright (C) 2024 The R Foundation for Statistical Computing 225s Platform: aarch64-unknown-linux-gnu (64-bit) 225s 225s R is free software and comes with ABSOLUTELY NO WARRANTY. 225s You are welcome to redistribute it under certain conditions. 225s Type 'license()' or 'licence()' for distribution details. 225s 225s R is a collaborative project with many contributors. 225s Type 'contributors()' for more information and 225s 'citation()' on how to cite R or R packages in publications. 225s 225s Type 'demo()' for some demos, 'help()' for on-line help, or 225s 'help.start()' for an HTML browser interface to help. 225s Type 'q()' to quit R. 225s 225s > library('ballgown') 236s 236s Attaching package: ‘ballgown’ 236s 236s > 236s > 236s The following object is masked from ‘package:base’: 236s 236s structure 236s 237s Other tests are currently unsupported! 237s They will be progressively added. 238s autopkgtest [17:24:20]: test pkg-r-autopkgtest: -----------------------] 238s autopkgtest [17:24:20]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 238s pkg-r-autopkgtest PASS 239s autopkgtest [17:24:21]: @@@@@@@@@@@@@@@@@@@@ summary 239s pkg-r-autopkgtest PASS 243s Creating nova instance adt-noble-arm64-r-bioc-ballgown-20240316-172022-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...