0s autopkgtest [17:20:21]: starting date and time: 2024-03-16 17:20:21+0000 0s autopkgtest [17:20:21]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:20:21]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tfb0e65a/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-arrayexpress --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-10.secgroup --name adt-noble-arm64-r-bioc-arrayexpress-20240316-172021-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 71s autopkgtest [17:21:32]: testbed dpkg architecture: arm64 72s autopkgtest [17:21:33]: testbed apt version: 2.7.12 72s autopkgtest [17:21:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 72s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 72s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 72s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 73s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 73s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 73s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 73s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 73s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 73s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 73s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 73s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 73s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 73s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 75s Fetched 9063 kB in 2s (5256 kB/s) 75s Reading package lists... 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Calculating upgrade... 79s The following packages will be REMOVED: 79s libglib2.0-0 libssl3 79s The following NEW packages will be installed: 79s libglib2.0-0t64 libssl3t64 xdg-user-dirs 79s The following packages have been kept back: 79s curl 79s The following packages will be upgraded: 79s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 79s ubuntu-minimal ubuntu-standard 79s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 79s Need to get 4613 kB of archives. 79s After this operation, 211 kB of additional disk space will be used. 79s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 79s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 79s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 79s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 80s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 80s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 80s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 80s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 80s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 80s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 80s Fetched 4613 kB in 1s (6840 kB/s) 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 80s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 80s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 80s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 80s udisks2 depends on libglib2.0-0 (>= 2.77.0). 80s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 80s python3-gi depends on libglib2.0-0 (>= 2.77.0). 80s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 80s netplan.io depends on libglib2.0-0 (>= 2.70.0). 80s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 80s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 80s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 80s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 80s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 80s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 80s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 80s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 80s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 80s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 80s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 80s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 80s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 80s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 80s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 80s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 80s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 80s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 80s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 80s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 80s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 80s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 80s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 80s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 80s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 80s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 80s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 80s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 80s fwupd depends on libglib2.0-0 (>= 2.79.0). 80s bolt depends on libglib2.0-0 (>= 2.56.0). 80s 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 80s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 80s Selecting previously unselected package libglib2.0-0t64:arm64. 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 80s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 80s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 80s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 80s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 80s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 80s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 81s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 81s wget depends on libssl3 (>= 3.0.0). 81s u-boot-tools depends on libssl3 (>= 3.0.0). 81s tnftp depends on libssl3 (>= 3.0.0). 81s tcpdump depends on libssl3 (>= 3.0.0). 81s systemd-resolved depends on libssl3 (>= 3.0.0). 81s systemd depends on libssl3 (>= 3.0.0). 81s sudo depends on libssl3 (>= 3.0.0). 81s sbsigntool depends on libssl3 (>= 3.0.0). 81s rsync depends on libssl3 (>= 3.0.0). 81s python3-cryptography depends on libssl3 (>= 3.0.0). 81s openssh-server depends on libssl3 (>= 3.0.10). 81s openssh-client depends on libssl3 (>= 3.0.10). 81s mtd-utils depends on libssl3 (>= 3.0.0). 81s mokutil depends on libssl3 (>= 3.0.0). 81s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 81s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 81s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 81s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 81s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 81s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 81s libnvme1 depends on libssl3 (>= 3.0.0). 81s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 81s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 81s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 81s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 81s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 81s kmod depends on libssl3 (>= 3.0.0). 81s dhcpcd-base depends on libssl3 (>= 3.0.0). 81s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 81s 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 81s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 81s Selecting previously unselected package libssl3t64:arm64. 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 81s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 81s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 81s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 81s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 81s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 81s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 81s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 81s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 81s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 81s Unpacking ubuntu-minimal (1.536) over (1.535) ... 81s Selecting previously unselected package xdg-user-dirs. 81s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 81s Unpacking xdg-user-dirs (0.18-1) ... 81s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 81s Unpacking ubuntu-standard (1.536) over (1.535) ... 81s Setting up ubuntu-minimal (1.536) ... 81s Setting up xdg-user-dirs (0.18-1) ... 81s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 81s Setting up libtirpc-common (1.3.4+ds-1.1) ... 81s Setting up ubuntu-standard (1.536) ... 81s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 81s No schema files found: doing nothing. 81s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 81s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 81s Setting up openssl (3.0.13-0ubuntu1) ... 81s Setting up readline-common (8.2-3.1) ... 81s Processing triggers for man-db (2.12.0-3) ... 82s Processing triggers for install-info (7.1-3) ... 82s Processing triggers for libc-bin (2.39-0ubuntu2) ... 82s Reading package lists... 82s Building dependency tree... 82s Reading state information... 83s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 83s sh: Attempting to set up Debian/Ubuntu apt sources automatically 83s sh: Distribution appears to be Ubuntu 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 85s eatmydata is already the newest version (131-1). 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 86s dbus is already the newest version (1.14.10-4ubuntu1). 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s rng-tools-debian is already the newest version (2.4). 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s The following packages will be REMOVED: 87s cloud-init* python3-configobj* python3-debconf* 87s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 87s After this operation, 3252 kB disk space will be freed. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 87s Removing cloud-init (24.1.1-0ubuntu1) ... 88s Removing python3-configobj (5.0.8-3) ... 88s Removing python3-debconf (1.5.86) ... 88s Processing triggers for man-db (2.12.0-3) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 88s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 89s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 89s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 89s invoke-rc.d: policy-rc.d denied execution of try-restart. 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 90s linux-generic is already the newest version (6.8.0-11.11+1). 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 90s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 91s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 92s Reading package lists... 92s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s Calculating upgrade... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s autopkgtest [17:21:56]: rebooting testbed after setup commands that affected boot 355s autopkgtest [17:26:16]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 358s autopkgtest [17:26:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-arrayexpress 361s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-arrayexpress 1.62.0-1 (dsc) [2212 B] 361s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-arrayexpress 1.62.0-1 (tar) [140 kB] 361s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-arrayexpress 1.62.0-1 (diff) [4924 B] 362s gpgv: Signature made Thu Nov 30 19:05:30 2023 UTC 362s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 362s gpgv: issuer "tille@debian.org" 362s gpgv: Can't check signature: No public key 362s dpkg-source: warning: cannot verify inline signature for ./r-bioc-arrayexpress_1.62.0-1.dsc: no acceptable signature found 362s autopkgtest [17:26:23]: testing package r-bioc-arrayexpress version 1.62.0-1 362s autopkgtest [17:26:23]: build not needed 363s autopkgtest [17:26:24]: test pkg-r-autopkgtest: preparing testbed 364s Reading package lists... 365s Building dependency tree... 365s Reading state information... 365s Starting pkgProblemResolver with broken count: 0 365s Starting 2 pkgProblemResolver with broken count: 0 365s Done 366s The following additional packages will be installed: 366s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 366s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 366s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 366s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 366s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 366s libasan8 libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev 366s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 366s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 366s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 366s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 366s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 366s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 366s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 366s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 366s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data 366s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 366s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 366s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 366s r-bioc-affxparser r-bioc-affy r-bioc-affyio r-bioc-arrayexpress 366s r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings r-bioc-delayedarray 366s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges 366s r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-oligo 366s r-bioc-oligoclasses r-bioc-preprocesscore r-bioc-s4arrays r-bioc-s4vectors 366s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 366s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-biocmanager r-cran-bit 366s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli 366s r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 366s r-cran-fastmap r-cran-ff r-cran-foreach r-cran-glue r-cran-httr 366s r-cran-iterators r-cran-jsonlite r-cran-lattice r-cran-lifecycle 366s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 366s r-cran-pkgconfig r-cran-plogr r-cran-r6 r-cran-rcurl r-cran-rlang 366s r-cran-rsqlite r-cran-statmod r-cran-sys r-cran-vctrs rpcsvc-proto unzip 366s x11-common xdg-utils zip zlib1g-dev 366s Suggested packages: 366s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 366s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 366s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 366s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 366s libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib 366s r-base-html texlive-base texlive-latex-base texlive-plain-generic 366s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 366s texlive-latex-recommended texlive-latex-extra texinfo r-cran-r.oo 366s r-cran-r.utils r-bioc-all r-cran-runit r-bioc-biocstyle r-cran-knitr 366s r-bioc-rsamtools r-bioc-annotationdbi r-bioc-deseq2 r-bioc-annotate 366s r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-biocparallel r-bioc-hdf5array 366s r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-cran-rmarkdown 366s r-cran-data.table r-bioc-genomicalignments r-bioc-rtracklayer r-bioc-gviz 366s r-bioc-variantannotation r-bioc-annotationhub r-bioc-dexseq r-bioc-edger 366s r-bioc-keggrest r-cran-digest r-cran-biasedurn r-cran-ellipse r-cran-gplots 366s r-cran-locfit r-cran-mass r-bioc-go.db r-bioc-org.hs.eg.db 366s r-bioc-sparsematrixstats r-cran-testthat r-cran-rcolorbrewer r-bioc-biomart 366s r-bioc-shortread r-bioc-graph r-bioc-rhdf5 r-cran-roxygen2 r-cran-covr 366s r-cran-pillar r-cran-rstudioapi r-cran-rmysql r-cran-rcpp r-cran-spelling 366s Recommended packages: 366s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended 366s r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 366s r-cran-rmarkdown r-cran-withr r-cran-knitr r-cran-callr r-cran-covr 366s r-cran-digest r-cran-htmltools r-cran-htmlwidgets r-cran-mockery 366s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-tibble 366s r-cran-whoami r-cran-bench r-cran-brio r-cran-decor r-cran-desc 366s r-cran-ggplot2 r-cran-lobstr r-cran-progress r-cran-scales r-cran-rcpp 366s r-cran-spelling r-cran-later r-cran-magrittr r-cran-httpuv r-cran-webutils 366s r-cran-dplyr r-cran-waldo r-cran-jpeg r-cran-png r-cran-readr r-cran-xml2 366s r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse r-cran-base64enc 366s r-cran-markdown r-cran-r.devices r-cran-sodium r-cran-xml r-cran-fs 366s r-cran-pillar r-cran-usethis r-cran-dbitest r-cran-gert r-cran-gh r-cran-hms 366s r-cran-rvest r-cran-generics r-cran-pkgdown r-cran-zeallot 366s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 366s x11-xserver-utils 366s The following NEW packages will be installed: 366s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 366s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 366s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 366s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 366s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 366s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 366s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 366s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 366s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 366s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 366s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 366s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 366s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 366s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 366s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 366s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 366s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 366s linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 366s r-base-dev r-bioc-affxparser r-bioc-affy r-bioc-affyio r-bioc-arrayexpress 366s r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings r-bioc-delayedarray 366s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges 366s r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-oligo 366s r-bioc-oligoclasses r-bioc-preprocesscore r-bioc-s4arrays r-bioc-s4vectors 366s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 366s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-biocmanager r-cran-bit 366s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli 366s r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 366s r-cran-fastmap r-cran-ff r-cran-foreach r-cran-glue r-cran-httr 366s r-cran-iterators r-cran-jsonlite r-cran-lattice r-cran-lifecycle 366s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 366s r-cran-pkgconfig r-cran-plogr r-cran-r6 r-cran-rcurl r-cran-rlang 366s r-cran-rsqlite r-cran-statmod r-cran-sys r-cran-vctrs rpcsvc-proto unzip 366s x11-common xdg-utils zip zlib1g-dev 366s 0 upgraded, 166 newly installed, 0 to remove and 0 not upgraded. 366s Need to get 200 MB/200 MB of archives. 366s After this operation, 521 MB of additional disk space will be used. 366s Get:1 /tmp/autopkgtest.teLm8X/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B] 366s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 366s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 367s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 367s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 367s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 367s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 367s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 367s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 368s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 368s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 369s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 369s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 369s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 369s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 369s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 369s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 369s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 369s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 369s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 369s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 369s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 369s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 369s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 370s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 370s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 370s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 370s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 370s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 370s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 371s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 371s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 371s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 371s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 371s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 371s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 371s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 371s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 371s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 371s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 371s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 371s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 371s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 371s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 371s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 371s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 371s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 371s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 371s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 371s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 371s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 371s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 371s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 371s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 371s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 371s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 371s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 371s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 371s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 371s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 371s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 371s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 371s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 371s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 371s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 371s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 371s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 371s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 371s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 372s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 372s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 372s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 372s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 372s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 372s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 372s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 372s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 372s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 372s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 372s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 372s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 372s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 372s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 372s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 372s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 372s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 372s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 372s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 372s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 372s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 372s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 372s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 372s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 372s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 372s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 372s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 372s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 372s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 372s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 372s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 372s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 372s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 372s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 373s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 373s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 373s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 373s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 373s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affxparser arm64 1.74.0-1 [993 kB] 373s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 373s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 373s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affyio arm64 1.72.0-1 [87.1 kB] 373s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 373s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-preprocesscore arm64 1.64.0+ds-1 [147 kB] 373s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affy arm64 1.80.0-1 [1350 kB] 373s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 374s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 374s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 374s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 374s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 374s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 374s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 374s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 374s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 374s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 374s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 374s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 374s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 374s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 374s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 374s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 375s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 375s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 375s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 375s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 375s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB] 375s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB] 375s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 375s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 375s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 375s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 375s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 375s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 375s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 375s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 375s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 375s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 375s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 375s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 375s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 375s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 375s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 375s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 376s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ff arm64 4.0.12+ds-1 [969 kB] 376s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-oligoclasses all 1.64.0-1 [1257 kB] 376s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-oligo arm64 1.66.0+ds-1 [922 kB] 376s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 376s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 376s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 376s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 376s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 376s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 376s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 376s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 376s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 376s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 376s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-arrayexpress all 1.62.0-1 [190 kB] 377s Preconfiguring packages ... 377s Fetched 200 MB in 10s (20.3 MB/s) 377s Selecting previously unselected package libc-dev-bin. 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 377s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 377s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 377s Selecting previously unselected package linux-libc-dev:arm64. 377s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 377s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 377s Selecting previously unselected package libcrypt-dev:arm64. 377s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 377s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 377s Selecting previously unselected package libtirpc-dev:arm64. 377s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 377s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 377s Selecting previously unselected package libnsl-dev:arm64. 377s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 377s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 377s Selecting previously unselected package rpcsvc-proto. 377s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 377s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 377s Selecting previously unselected package libc6-dev:arm64. 377s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 377s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 378s Selecting previously unselected package libisl23:arm64. 378s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 378s Unpacking libisl23:arm64 (0.26-3) ... 378s Selecting previously unselected package libmpc3:arm64. 378s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 378s Unpacking libmpc3:arm64 (1.3.1-1) ... 378s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 378s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 378s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 378s Selecting previously unselected package cpp-13. 378s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 378s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 378s Selecting previously unselected package cpp-aarch64-linux-gnu. 378s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 378s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 378s Selecting previously unselected package cpp. 378s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 378s Unpacking cpp (4:13.2.0-7ubuntu1) ... 378s Selecting previously unselected package libcc1-0:arm64. 378s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package libgomp1:arm64. 378s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package libitm1:arm64. 378s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package libatomic1:arm64. 378s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package libasan8:arm64. 378s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package liblsan0:arm64. 378s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package libtsan2:arm64. 378s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package libubsan1:arm64. 378s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 379s Selecting previously unselected package libhwasan0:arm64. 379s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 379s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 379s Selecting previously unselected package libgcc-13-dev:arm64. 379s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 379s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 379s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 379s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 379s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 379s Selecting previously unselected package gcc-13. 379s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 379s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 379s Selecting previously unselected package gcc-aarch64-linux-gnu. 379s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 379s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 379s Selecting previously unselected package gcc. 379s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 379s Unpacking gcc (4:13.2.0-7ubuntu1) ... 379s Selecting previously unselected package libstdc++-13-dev:arm64. 379s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 379s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 380s Selecting previously unselected package g++-13-aarch64-linux-gnu. 380s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 380s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 380s Selecting previously unselected package g++-13. 380s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 380s Unpacking g++-13 (13.2.0-17ubuntu2) ... 380s Selecting previously unselected package g++-aarch64-linux-gnu. 380s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 380s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 380s Selecting previously unselected package g++. 380s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 380s Unpacking g++ (4:13.2.0-7ubuntu1) ... 380s Selecting previously unselected package build-essential. 380s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 380s Unpacking build-essential (12.10ubuntu1) ... 380s Selecting previously unselected package dctrl-tools. 380s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 380s Unpacking dctrl-tools (2.24-3build2) ... 380s Selecting previously unselected package fonts-dejavu-mono. 380s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 380s Unpacking fonts-dejavu-mono (2.37-8) ... 380s Selecting previously unselected package fonts-dejavu-core. 380s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 380s Unpacking fonts-dejavu-core (2.37-8) ... 380s Selecting previously unselected package fontconfig-config. 380s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 380s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 380s Selecting previously unselected package libfontconfig1:arm64. 380s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 380s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 380s Selecting previously unselected package fontconfig. 381s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 381s Unpacking fontconfig (2.15.0-1ubuntu1) ... 381s Selecting previously unselected package libgfortran5:arm64. 381s Preparing to unpack .../039-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 381s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 381s Selecting previously unselected package libgfortran-13-dev:arm64. 381s Preparing to unpack .../040-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 381s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 381s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 381s Preparing to unpack .../041-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 381s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 381s Selecting previously unselected package gfortran-13. 381s Preparing to unpack .../042-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 381s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 381s Selecting previously unselected package gfortran-aarch64-linux-gnu. 381s Preparing to unpack .../043-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 381s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 381s Selecting previously unselected package gfortran. 381s Preparing to unpack .../044-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 381s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 381s Selecting previously unselected package icu-devtools. 381s Preparing to unpack .../045-icu-devtools_74.2-1ubuntu1_arm64.deb ... 381s Unpacking icu-devtools (74.2-1ubuntu1) ... 381s Selecting previously unselected package libblas3:arm64. 381s Preparing to unpack .../046-libblas3_3.12.0-3_arm64.deb ... 381s Unpacking libblas3:arm64 (3.12.0-3) ... 381s Selecting previously unselected package libblas-dev:arm64. 381s Preparing to unpack .../047-libblas-dev_3.12.0-3_arm64.deb ... 381s Unpacking libblas-dev:arm64 (3.12.0-3) ... 381s Selecting previously unselected package libbz2-dev:arm64. 381s Preparing to unpack .../048-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 381s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 381s Selecting previously unselected package libpixman-1-0:arm64. 381s Preparing to unpack .../049-libpixman-1-0_0.42.2-1_arm64.deb ... 381s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 381s Selecting previously unselected package libxcb-render0:arm64. 381s Preparing to unpack .../050-libxcb-render0_1.15-1_arm64.deb ... 381s Unpacking libxcb-render0:arm64 (1.15-1) ... 381s Selecting previously unselected package libxcb-shm0:arm64. 381s Preparing to unpack .../051-libxcb-shm0_1.15-1_arm64.deb ... 381s Unpacking libxcb-shm0:arm64 (1.15-1) ... 381s Selecting previously unselected package libxrender1:arm64. 381s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 381s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 381s Selecting previously unselected package libcairo2:arm64. 381s Preparing to unpack .../053-libcairo2_1.18.0-1_arm64.deb ... 381s Unpacking libcairo2:arm64 (1.18.0-1) ... 381s Selecting previously unselected package libdatrie1:arm64. 381s Preparing to unpack .../054-libdatrie1_0.2.13-3_arm64.deb ... 381s Unpacking libdatrie1:arm64 (0.2.13-3) ... 381s Selecting previously unselected package libdeflate0:arm64. 381s Preparing to unpack .../055-libdeflate0_1.19-1_arm64.deb ... 381s Unpacking libdeflate0:arm64 (1.19-1) ... 381s Selecting previously unselected package libgraphite2-3:arm64. 382s Preparing to unpack .../056-libgraphite2-3_1.3.14-2_arm64.deb ... 382s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 382s Selecting previously unselected package libharfbuzz0b:arm64. 382s Preparing to unpack .../057-libharfbuzz0b_8.3.0-2_arm64.deb ... 382s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 382s Selecting previously unselected package x11-common. 382s Preparing to unpack .../058-x11-common_1%3a7.7+23ubuntu2_all.deb ... 382s Unpacking x11-common (1:7.7+23ubuntu2) ... 382s Selecting previously unselected package libice6:arm64. 382s Preparing to unpack .../059-libice6_2%3a1.0.10-1build2_arm64.deb ... 382s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 382s Selecting previously unselected package libicu-dev:arm64. 382s Preparing to unpack .../060-libicu-dev_74.2-1ubuntu1_arm64.deb ... 382s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 382s Selecting previously unselected package libjpeg-turbo8:arm64. 382s Preparing to unpack .../061-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 382s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 382s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 382s Preparing to unpack .../062-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 382s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 382s Selecting previously unselected package libjpeg8:arm64. 382s Preparing to unpack .../063-libjpeg8_8c-2ubuntu11_arm64.deb ... 382s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 382s Selecting previously unselected package libjpeg8-dev:arm64. 382s Preparing to unpack .../064-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 382s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 382s Selecting previously unselected package libjpeg-dev:arm64. 382s Preparing to unpack .../065-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 382s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 382s Selecting previously unselected package liblapack3:arm64. 382s Preparing to unpack .../066-liblapack3_3.12.0-3_arm64.deb ... 382s Unpacking liblapack3:arm64 (3.12.0-3) ... 382s Selecting previously unselected package liblapack-dev:arm64. 382s Preparing to unpack .../067-liblapack-dev_3.12.0-3_arm64.deb ... 382s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 383s Selecting previously unselected package liblerc4:arm64. 383s Preparing to unpack .../068-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 383s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 383s Selecting previously unselected package libncurses-dev:arm64. 383s Preparing to unpack .../069-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 383s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 383s Selecting previously unselected package libthai-data. 383s Preparing to unpack .../070-libthai-data_0.1.29-2_all.deb ... 383s Unpacking libthai-data (0.1.29-2) ... 383s Selecting previously unselected package libthai0:arm64. 383s Preparing to unpack .../071-libthai0_0.1.29-2_arm64.deb ... 383s Unpacking libthai0:arm64 (0.1.29-2) ... 383s Selecting previously unselected package libpango-1.0-0:arm64. 383s Preparing to unpack .../072-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 383s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 383s Selecting previously unselected package libpangoft2-1.0-0:arm64. 383s Preparing to unpack .../073-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 383s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 383s Selecting previously unselected package libpangocairo-1.0-0:arm64. 383s Preparing to unpack .../074-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 383s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 384s Selecting previously unselected package libpaper1:arm64. 384s Preparing to unpack .../075-libpaper1_1.1.29_arm64.deb ... 384s Unpacking libpaper1:arm64 (1.1.29) ... 384s Selecting previously unselected package libpaper-utils. 384s Preparing to unpack .../076-libpaper-utils_1.1.29_arm64.deb ... 384s Unpacking libpaper-utils (1.1.29) ... 384s Selecting previously unselected package libpcre2-16-0:arm64. 384s Preparing to unpack .../077-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 384s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 384s Selecting previously unselected package libpcre2-32-0:arm64. 384s Preparing to unpack .../078-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 384s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 384s Selecting previously unselected package libpcre2-posix3:arm64. 384s Preparing to unpack .../079-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 384s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 384s Selecting previously unselected package libpcre2-dev:arm64. 384s Preparing to unpack .../080-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 384s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 384s Selecting previously unselected package libpkgconf3:arm64. 384s Preparing to unpack .../081-libpkgconf3_1.8.1-2_arm64.deb ... 384s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 384s Selecting previously unselected package zlib1g-dev:arm64. 384s Preparing to unpack .../082-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 384s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 384s Selecting previously unselected package libpng-dev:arm64. 384s Preparing to unpack .../083-libpng-dev_1.6.43-1_arm64.deb ... 384s Unpacking libpng-dev:arm64 (1.6.43-1) ... 384s Selecting previously unselected package libreadline-dev:arm64. 384s Preparing to unpack .../084-libreadline-dev_8.2-3_arm64.deb ... 384s Unpacking libreadline-dev:arm64 (8.2-3) ... 384s Selecting previously unselected package libsharpyuv0:arm64. 384s Preparing to unpack .../085-libsharpyuv0_1.3.2-0.4_arm64.deb ... 384s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 384s Selecting previously unselected package libsm6:arm64. 384s Preparing to unpack .../086-libsm6_2%3a1.2.3-1build2_arm64.deb ... 384s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 384s Selecting previously unselected package libtcl8.6:arm64. 384s Preparing to unpack .../087-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 384s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 384s Selecting previously unselected package libjbig0:arm64. 384s Preparing to unpack .../088-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 384s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 384s Selecting previously unselected package libwebp7:arm64. 384s Preparing to unpack .../089-libwebp7_1.3.2-0.4_arm64.deb ... 384s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 384s Selecting previously unselected package libtiff6:arm64. 384s Preparing to unpack .../090-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 384s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 384s Selecting previously unselected package libxft2:arm64. 384s Preparing to unpack .../091-libxft2_2.3.6-1_arm64.deb ... 384s Unpacking libxft2:arm64 (2.3.6-1) ... 384s Selecting previously unselected package libxss1:arm64. 384s Preparing to unpack .../092-libxss1_1%3a1.2.3-1build2_arm64.deb ... 384s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 384s Selecting previously unselected package libtk8.6:arm64. 384s Preparing to unpack .../093-libtk8.6_8.6.13-2_arm64.deb ... 384s Unpacking libtk8.6:arm64 (8.6.13-2) ... 384s Selecting previously unselected package libxt6:arm64. 384s Preparing to unpack .../094-libxt6_1%3a1.2.1-1.1_arm64.deb ... 384s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 384s Selecting previously unselected package pkgconf-bin. 385s Preparing to unpack .../095-pkgconf-bin_1.8.1-2_arm64.deb ... 385s Unpacking pkgconf-bin (1.8.1-2) ... 385s Selecting previously unselected package pkgconf:arm64. 385s Preparing to unpack .../096-pkgconf_1.8.1-2_arm64.deb ... 385s Unpacking pkgconf:arm64 (1.8.1-2) ... 385s Selecting previously unselected package pkg-config:arm64. 385s Preparing to unpack .../097-pkg-config_1.8.1-2_arm64.deb ... 385s Unpacking pkg-config:arm64 (1.8.1-2) ... 385s Selecting previously unselected package zip. 385s Preparing to unpack .../098-zip_3.0-13_arm64.deb ... 385s Unpacking zip (3.0-13) ... 385s Selecting previously unselected package unzip. 385s Preparing to unpack .../099-unzip_6.0-28ubuntu3_arm64.deb ... 385s Unpacking unzip (6.0-28ubuntu3) ... 385s Selecting previously unselected package xdg-utils. 385s Preparing to unpack .../100-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 385s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 385s Selecting previously unselected package r-base-core. 385s Preparing to unpack .../101-r-base-core_4.3.2-1build1_arm64.deb ... 385s Unpacking r-base-core (4.3.2-1build1) ... 385s Selecting previously unselected package liblzma-dev:arm64. 385s Preparing to unpack .../102-liblzma-dev_5.4.5-0.3_arm64.deb ... 385s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 385s Selecting previously unselected package r-base-dev. 385s Preparing to unpack .../103-r-base-dev_4.3.2-1build1_all.deb ... 385s Unpacking r-base-dev (4.3.2-1build1) ... 385s Selecting previously unselected package pkg-r-autopkgtest. 385s Preparing to unpack .../104-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 385s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 385s Selecting previously unselected package r-bioc-biocgenerics. 385s Preparing to unpack .../105-r-bioc-biocgenerics_0.48.1-2_all.deb ... 385s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 385s Selecting previously unselected package r-bioc-affxparser. 385s Preparing to unpack .../106-r-bioc-affxparser_1.74.0-1_arm64.deb ... 385s Unpacking r-bioc-affxparser (1.74.0-1) ... 385s Selecting previously unselected package r-bioc-biobase. 385s Preparing to unpack .../107-r-bioc-biobase_2.62.0-1_arm64.deb ... 385s Unpacking r-bioc-biobase (2.62.0-1) ... 385s Selecting previously unselected package r-bioc-zlibbioc. 385s Preparing to unpack .../108-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 385s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 385s Selecting previously unselected package r-bioc-affyio. 385s Preparing to unpack .../109-r-bioc-affyio_1.72.0-1_arm64.deb ... 385s Unpacking r-bioc-affyio (1.72.0-1) ... 385s Selecting previously unselected package r-cran-biocmanager. 385s Preparing to unpack .../110-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 385s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 385s Selecting previously unselected package r-bioc-preprocesscore. 385s Preparing to unpack .../111-r-bioc-preprocesscore_1.64.0+ds-1_arm64.deb ... 385s Unpacking r-bioc-preprocesscore (1.64.0+ds-1) ... 385s Selecting previously unselected package r-bioc-affy. 386s Preparing to unpack .../112-r-bioc-affy_1.80.0-1_arm64.deb ... 386s Unpacking r-bioc-affy (1.80.0-1) ... 386s Selecting previously unselected package r-bioc-s4vectors. 386s Preparing to unpack .../113-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 386s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 386s Selecting previously unselected package r-bioc-iranges. 386s Preparing to unpack .../114-r-bioc-iranges_2.36.0-1_arm64.deb ... 386s Unpacking r-bioc-iranges (2.36.0-1) ... 386s Selecting previously unselected package r-cran-bitops. 386s Preparing to unpack .../115-r-cran-bitops_1.0-7-1_arm64.deb ... 386s Unpacking r-cran-bitops (1.0-7-1) ... 386s Selecting previously unselected package r-cran-rcurl. 386s Preparing to unpack .../116-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 386s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 386s Selecting previously unselected package r-bioc-genomeinfodbdata. 386s Preparing to unpack .../117-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 386s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 386s Selecting previously unselected package r-bioc-genomeinfodb. 386s Preparing to unpack .../118-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 386s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 386s Selecting previously unselected package r-bioc-xvector. 386s Preparing to unpack .../119-r-bioc-xvector_0.42.0-1_arm64.deb ... 386s Unpacking r-bioc-xvector (0.42.0-1) ... 386s Selecting previously unselected package r-bioc-genomicranges. 386s Preparing to unpack .../120-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 386s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 386s Selecting previously unselected package r-cran-matrixstats. 386s Preparing to unpack .../121-r-cran-matrixstats_1.2.0-1_arm64.deb ... 386s Unpacking r-cran-matrixstats (1.2.0-1) ... 386s Selecting previously unselected package r-bioc-matrixgenerics. 386s Preparing to unpack .../122-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 386s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 386s Selecting previously unselected package r-cran-lattice. 386s Preparing to unpack .../123-r-cran-lattice_0.22-5-1_arm64.deb ... 386s Unpacking r-cran-lattice (0.22-5-1) ... 386s Selecting previously unselected package r-cran-matrix. 386s Preparing to unpack .../124-r-cran-matrix_1.6-5-1_arm64.deb ... 386s Unpacking r-cran-matrix (1.6-5-1) ... 386s Selecting previously unselected package r-cran-abind. 386s Preparing to unpack .../125-r-cran-abind_1.4-5-2_all.deb ... 386s Unpacking r-cran-abind (1.4-5-2) ... 386s Selecting previously unselected package r-cran-crayon. 386s Preparing to unpack .../126-r-cran-crayon_1.5.2-1_all.deb ... 386s Unpacking r-cran-crayon (1.5.2-1) ... 386s Selecting previously unselected package r-bioc-s4arrays. 386s Preparing to unpack .../127-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 386s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 386s Selecting previously unselected package r-bioc-sparsearray. 386s Preparing to unpack .../128-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 386s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 386s Selecting previously unselected package r-bioc-delayedarray. 386s Preparing to unpack .../129-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 386s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 386s Selecting previously unselected package r-bioc-summarizedexperiment. 387s Preparing to unpack .../130-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 387s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 387s Selecting previously unselected package r-bioc-biostrings. 387s Preparing to unpack .../131-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 387s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 387s Selecting previously unselected package r-cran-codetools. 387s Preparing to unpack .../132-r-cran-codetools_0.2-19-1_all.deb ... 387s Unpacking r-cran-codetools (0.2-19-1) ... 387s Selecting previously unselected package r-cran-iterators. 387s Preparing to unpack .../133-r-cran-iterators_1.0.14-1_all.deb ... 387s Unpacking r-cran-iterators (1.0.14-1) ... 387s Selecting previously unselected package r-cran-foreach. 387s Preparing to unpack .../134-r-cran-foreach_1.5.2-1_all.deb ... 387s Unpacking r-cran-foreach (1.5.2-1) ... 387s Selecting previously unselected package r-cran-bit. 387s Preparing to unpack .../135-r-cran-bit_4.0.5-1_arm64.deb ... 387s Unpacking r-cran-bit (4.0.5-1) ... 387s Selecting previously unselected package r-cran-bit64. 387s Preparing to unpack .../136-r-cran-bit64_4.0.5-1_arm64.deb ... 387s Unpacking r-cran-bit64 (4.0.5-1) ... 387s Selecting previously unselected package r-cran-rlang. 387s Preparing to unpack .../137-r-cran-rlang_1.1.3-1_arm64.deb ... 387s Unpacking r-cran-rlang (1.1.3-1) ... 387s Selecting previously unselected package r-cran-cli. 387s Preparing to unpack .../138-r-cran-cli_3.6.2-1_arm64.deb ... 387s Unpacking r-cran-cli (3.6.2-1) ... 387s Selecting previously unselected package r-cran-glue. 387s Preparing to unpack .../139-r-cran-glue_1.7.0-1_arm64.deb ... 387s Unpacking r-cran-glue (1.7.0-1) ... 387s Selecting previously unselected package r-cran-lifecycle. 387s Preparing to unpack .../140-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 387s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 387s Selecting previously unselected package r-cran-vctrs. 387s Preparing to unpack .../141-r-cran-vctrs_0.6.5-1_arm64.deb ... 387s Unpacking r-cran-vctrs (0.6.5-1) ... 387s Selecting previously unselected package r-cran-blob. 387s Preparing to unpack .../142-r-cran-blob_1.2.4-1_all.deb ... 387s Unpacking r-cran-blob (1.2.4-1) ... 387s Selecting previously unselected package r-cran-dbi. 387s Preparing to unpack .../143-r-cran-dbi_1.2.2-1_all.deb ... 387s Unpacking r-cran-dbi (1.2.2-1) ... 387s Selecting previously unselected package r-cran-fastmap. 387s Preparing to unpack .../144-r-cran-fastmap_1.1.1-1_arm64.deb ... 387s Unpacking r-cran-fastmap (1.1.1-1) ... 387s Selecting previously unselected package r-cran-cachem. 387s Preparing to unpack .../145-r-cran-cachem_1.0.8-1_arm64.deb ... 387s Unpacking r-cran-cachem (1.0.8-1) ... 387s Selecting previously unselected package r-cran-memoise. 387s Preparing to unpack .../146-r-cran-memoise_2.0.1-1_all.deb ... 387s Unpacking r-cran-memoise (2.0.1-1) ... 387s Selecting previously unselected package r-cran-pkgconfig. 387s Preparing to unpack .../147-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 387s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 387s Selecting previously unselected package r-cran-plogr. 387s Preparing to unpack .../148-r-cran-plogr_0.2.0-3build1_all.deb ... 387s Unpacking r-cran-plogr (0.2.0-3build1) ... 387s Selecting previously unselected package r-cran-cpp11. 387s Preparing to unpack .../149-r-cran-cpp11_0.4.7-1_all.deb ... 387s Unpacking r-cran-cpp11 (0.4.7-1) ... 387s Selecting previously unselected package r-cran-rsqlite. 387s Preparing to unpack .../150-r-cran-rsqlite_2.3.4-1_arm64.deb ... 387s Unpacking r-cran-rsqlite (2.3.4-1) ... 387s Selecting previously unselected package r-cran-ff. 387s Preparing to unpack .../151-r-cran-ff_4.0.12+ds-1_arm64.deb ... 387s Unpacking r-cran-ff (4.0.12+ds-1) ... 387s Selecting previously unselected package r-bioc-oligoclasses. 387s Preparing to unpack .../152-r-bioc-oligoclasses_1.64.0-1_all.deb ... 387s Unpacking r-bioc-oligoclasses (1.64.0-1) ... 388s Selecting previously unselected package r-bioc-oligo. 388s Preparing to unpack .../153-r-bioc-oligo_1.66.0+ds-1_arm64.deb ... 388s Unpacking r-bioc-oligo (1.66.0+ds-1) ... 388s Selecting previously unselected package r-cran-statmod. 388s Preparing to unpack .../154-r-cran-statmod_1.5.0-1_arm64.deb ... 388s Unpacking r-cran-statmod (1.5.0-1) ... 388s Selecting previously unselected package r-bioc-limma. 388s Preparing to unpack .../155-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 388s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 388s Selecting previously unselected package r-cran-curl. 388s Preparing to unpack .../156-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 388s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 388s Selecting previously unselected package r-cran-jsonlite. 388s Preparing to unpack .../157-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 388s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 388s Selecting previously unselected package r-cran-mime. 388s Preparing to unpack .../158-r-cran-mime_0.12-1_arm64.deb ... 388s Unpacking r-cran-mime (0.12-1) ... 388s Selecting previously unselected package r-cran-sys. 388s Preparing to unpack .../159-r-cran-sys_3.4.2-1_arm64.deb ... 388s Unpacking r-cran-sys (3.4.2-1) ... 388s Selecting previously unselected package r-cran-askpass. 388s Preparing to unpack .../160-r-cran-askpass_1.2.0-1_arm64.deb ... 388s Unpacking r-cran-askpass (1.2.0-1) ... 388s Selecting previously unselected package r-cran-openssl. 388s Preparing to unpack .../161-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 388s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 388s Selecting previously unselected package r-cran-r6. 388s Preparing to unpack .../162-r-cran-r6_2.5.1-1_all.deb ... 388s Unpacking r-cran-r6 (2.5.1-1) ... 388s Selecting previously unselected package r-cran-httr. 388s Preparing to unpack .../163-r-cran-httr_1.4.7+dfsg-1_all.deb ... 388s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 388s Selecting previously unselected package r-bioc-arrayexpress. 388s Preparing to unpack .../164-r-bioc-arrayexpress_1.62.0-1_all.deb ... 388s Unpacking r-bioc-arrayexpress (1.62.0-1) ... 388s Selecting previously unselected package autopkgtest-satdep. 388s Preparing to unpack .../165-1-autopkgtest-satdep.deb ... 388s Unpacking autopkgtest-satdep (0) ... 388s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 388s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 388s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 388s Setting up libpaper1:arm64 (1.1.29) ... 388s 388s Creating config file /etc/papersize with new version 388s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 388s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 388s Setting up libdatrie1:arm64 (0.2.13-3) ... 388s Setting up libxcb-render0:arm64 (1.15-1) ... 388s Setting up unzip (6.0-28ubuntu3) ... 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/usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 391s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 391s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 391s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 391s Setting up r-cran-bitops (1.0-7-1) ... 391s Setting up r-cran-bit64 (4.0.5-1) ... 391s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 391s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 391s Setting up r-cran-askpass (1.2.0-1) ... 391s Setting up r-cran-fastmap (1.1.1-1) ... 391s Setting up r-bioc-affxparser (1.74.0-1) ... 391s Setting up r-bioc-biobase (2.62.0-1) ... 391s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 391s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 391s Setting up r-cran-cpp11 (0.4.7-1) ... 392s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 392s Setting up r-bioc-limma 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(0.42.0-1) ... 392s Setting up r-cran-rsqlite (2.3.4-1) ... 392s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 392s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 392s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 392s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 392s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 392s Setting up r-bioc-oligoclasses (1.64.0-1) ... 392s Setting up r-bioc-oligo (1.66.0+ds-1) ... 392s Setting up r-bioc-arrayexpress (1.62.0-1) ... 392s Setting up autopkgtest-satdep (0) ... 392s Processing triggers for man-db (2.12.0-3) ... 393s Processing triggers for install-info (7.1-3) ... 393s Processing triggers for libc-bin (2.39-0ubuntu2) ... 400s (Reading database ... 84029 files and directories currently installed.) 400s Removing autopkgtest-satdep (0) ... 401s autopkgtest [17:27:02]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 401s autopkgtest [17:27:02]: test pkg-r-autopkgtest: [----------------------- 401s Test: Try to load the R library ArrayExpress 401s 401s R version 4.3.2 (2023-10-31) -- "Eye Holes" 401s Copyright (C) 2023 The R Foundation for Statistical Computing 401s Platform: aarch64-unknown-linux-gnu (64-bit) 401s 401s R is free software and comes with ABSOLUTELY NO WARRANTY. 401s You are welcome to redistribute it under certain conditions. 401s Type 'license()' or 'licence()' for distribution details. 401s 401s R is a collaborative project with many contributors. 401s Type 'contributors()' for more information and 401s 'citation()' on how to cite R or R packages in publications. 401s 401s Type 'demo()' for some demos, 'help()' for on-line help, or 401s 'help.start()' for an HTML browser interface to help. 401s Type 'q()' to quit R. 401s 401s > library('ArrayExpress') 401s Loading required package: Biobase 401s Loading required package: BiocGenerics 401s 401s Attaching package: ‘BiocGenerics’ 401s 401s The following objects are masked from ‘package:stats’: 401s 401s IQR, mad, sd, var, xtabs 401s 401s The following objects are masked from ‘package:base’: 401s 401s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 401s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 401s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 401s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 401s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 401s table, tapply, union, unique, unsplit, which.max, which.min 401s 401s Welcome to Bioconductor 401s 401s Vignettes contain introductory material; view with 401s 'browseVignettes()'. To cite Bioconductor, see 401s 'citation("Biobase")', and for packages 'citation("pkgname")'. 401s 408s > 408s > 408s Other tests are currently unsupported! 408s They will be progressively added. 408s autopkgtest [17:27:09]: test pkg-r-autopkgtest: -----------------------] 409s autopkgtest [17:27:10]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 409s pkg-r-autopkgtest PASS 409s autopkgtest [17:27:10]: @@@@@@@@@@@@@@@@@@@@ summary 409s pkg-r-autopkgtest PASS 427s Creating nova instance adt-noble-arm64-r-bioc-arrayexpress-20240316-172021-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...