0s autopkgtest [17:20:14]: starting date and time: 2024-03-16 17:20:14+0000 0s autopkgtest [17:20:14]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:20:14]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ugdo7wk7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-annotationhub --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-25.secgroup --name adt-noble-arm64-r-bioc-annotationhub-20240316-172014-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 93s autopkgtest [17:21:47]: testbed dpkg architecture: arm64 93s autopkgtest [17:21:47]: testbed apt version: 2.7.12 93s autopkgtest [17:21:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 93s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 94s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 94s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 94s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 94s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 94s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 94s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 94s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 94s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 94s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 95s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 95s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 95s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 96s Fetched 9063 kB in 2s (4716 kB/s) 97s Reading package lists... 100s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s Calculating upgrade... 102s The following packages will be REMOVED: 102s libglib2.0-0 libssl3 102s The following NEW packages will be installed: 102s libglib2.0-0t64 libssl3t64 xdg-user-dirs 102s The following packages have been kept back: 102s curl 102s The following packages will be upgraded: 102s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 102s ubuntu-minimal ubuntu-standard 102s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 102s Need to get 4613 kB of archives. 102s After this operation, 211 kB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 103s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 103s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 103s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 103s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 103s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 103s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 103s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 103s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 103s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 105s Fetched 4613 kB in 1s (5714 kB/s) 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 105s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 105s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 105s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 105s udisks2 depends on libglib2.0-0 (>= 2.77.0). 105s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 105s python3-gi depends on libglib2.0-0 (>= 2.77.0). 105s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 105s netplan.io depends on libglib2.0-0 (>= 2.70.0). 105s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 105s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 105s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 105s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 105s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 105s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 105s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 105s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 105s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 105s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 105s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 105s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 105s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 105s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 105s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 105s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 105s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 105s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 105s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 105s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 105s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 105s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 105s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 105s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 105s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 105s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 105s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 105s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 105s fwupd depends on libglib2.0-0 (>= 2.79.0). 105s bolt depends on libglib2.0-0 (>= 2.56.0). 105s 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 105s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 106s Selecting previously unselected package libglib2.0-0t64:arm64. 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 106s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 106s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 106s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 106s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 106s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 106s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 106s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 106s wget depends on libssl3 (>= 3.0.0). 106s u-boot-tools depends on libssl3 (>= 3.0.0). 106s tnftp depends on libssl3 (>= 3.0.0). 106s tcpdump depends on libssl3 (>= 3.0.0). 106s systemd-resolved depends on libssl3 (>= 3.0.0). 106s systemd depends on libssl3 (>= 3.0.0). 106s sudo depends on libssl3 (>= 3.0.0). 106s sbsigntool depends on libssl3 (>= 3.0.0). 106s rsync depends on libssl3 (>= 3.0.0). 106s python3-cryptography depends on libssl3 (>= 3.0.0). 106s openssh-server depends on libssl3 (>= 3.0.10). 106s openssh-client depends on libssl3 (>= 3.0.10). 106s mtd-utils depends on libssl3 (>= 3.0.0). 106s mokutil depends on libssl3 (>= 3.0.0). 106s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 106s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 106s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 106s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 106s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 106s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 106s libnvme1 depends on libssl3 (>= 3.0.0). 106s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 106s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 106s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 106s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 106s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 106s kmod depends on libssl3 (>= 3.0.0). 106s dhcpcd-base depends on libssl3 (>= 3.0.0). 106s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 106s 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 106s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 106s Selecting previously unselected package libssl3t64:arm64. 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 106s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 106s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 107s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 107s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 107s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 107s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 107s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 107s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 108s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 108s Unpacking ubuntu-minimal (1.536) over (1.535) ... 108s Selecting previously unselected package xdg-user-dirs. 108s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 108s Unpacking xdg-user-dirs (0.18-1) ... 108s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 108s Unpacking ubuntu-standard (1.536) over (1.535) ... 108s Setting up ubuntu-minimal (1.536) ... 108s Setting up xdg-user-dirs (0.18-1) ... 108s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 108s Setting up libtirpc-common (1.3.4+ds-1.1) ... 108s Setting up ubuntu-standard (1.536) ... 108s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 108s No schema files found: doing nothing. 108s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 108s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 108s Setting up openssl (3.0.13-0ubuntu1) ... 108s Setting up readline-common (8.2-3.1) ... 108s Processing triggers for man-db (2.12.0-3) ... 109s Processing triggers for install-info (7.1-3) ... 109s Processing triggers for libc-bin (2.39-0ubuntu2) ... 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 111s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 111s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 111s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 111s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 112s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 113s Reading package lists... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 114s Calculating upgrade... 114s The following packages have been kept back: 114s curl 114s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 119s autopkgtest [17:22:13]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 119s autopkgtest [17:22:13]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-annotationhub 121s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-annotationhub 3.10.0+dfsg-1 (dsc) [2403 B] 121s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-annotationhub 3.10.0+dfsg-1 (tar) [170 kB] 121s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-annotationhub 3.10.0+dfsg-1 (diff) [5564 B] 121s gpgv: Signature made Thu Nov 30 13:34:36 2023 UTC 121s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 121s gpgv: issuer "tillea@rki.de" 121s gpgv: Can't check signature: No public key 121s dpkg-source: warning: cannot verify inline signature for ./r-bioc-annotationhub_3.10.0+dfsg-1.dsc: no acceptable signature found 122s autopkgtest [17:22:16]: testing package r-bioc-annotationhub version 3.10.0+dfsg-1 122s autopkgtest [17:22:16]: build not needed 123s autopkgtest [17:22:17]: test pkg-r-autopkgtest: preparing testbed 125s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s Starting pkgProblemResolver with broken count: 0 126s Starting 2 pkgProblemResolver with broken count: 0 126s Done 126s The following additional packages will be installed: 126s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 126s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 126s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 126s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 126s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 126s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 126s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 126s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 126s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 126s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 126s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 126s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 126s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 126s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 126s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 126s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 126s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 126s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 126s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 126s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 126s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 126s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 126s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 126s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 126s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 126s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 126s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 126s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 126s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 126s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 126s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 126s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 126s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 126s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb 126s r-bioc-experimenthub r-bioc-genomeinfodb r-bioc-genomeinfodbdata 126s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 126s r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-keggrest 126s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 126s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 126s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 126s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 126s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 126s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 126s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 126s r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt 126s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 126s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 126s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 126s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 126s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 126s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 126s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 126s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 126s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 126s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 126s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 126s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 126s r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 126s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 126s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 126s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 126s x11-common xdg-utils zip zlib1g-dev 126s Suggested packages: 126s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 126s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 126s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 126s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 126s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 126s libboost-context1.83-dev libboost-contract1.83-dev 126s libboost-coroutine1.83-dev libboost-date-time1.83-dev 126s libboost-exception1.83-dev libboost-fiber1.83-dev 126s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 126s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 126s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 126s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 126s libboost-numpy1.83-dev libboost-program-options1.83-dev 126s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 126s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 126s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 126s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 126s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 126s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 126s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 126s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 126s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 126s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 126s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 126s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 126s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-cran-testthat r-bioc-all 126s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 126s r-cran-doparallel r-bioc-shortread r-cran-batchtools r-cran-data.table 126s r-cran-mockery r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter 126s r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-ggbio r-bioc-gviz 126s r-cran-r.utils r-bioc-edger r-cran-markdown r-bioc-dexseq 126s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-bioc-snpstats 126s r-cran-ggplot2 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-rstudioapi 126s r-cran-rmysql r-cran-lubridate r-cran-getopt r-cran-formattable 126s r-cran-nanotime r-cran-palmerpenguins r-cran-scales r-cran-survival 126s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 126s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 126s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 126s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 126s hintview texlive-latex-base-doc wp2latex 126s Recommended packages: 126s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 126s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-downlit 126s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 126s r-cran-webshot r-cran-ggplot2 r-cran-thematic r-cran-callr r-cran-covr 126s r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami 126s r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr 126s r-cran-scales r-cran-spelling r-cran-webutils r-cran-rpostgresql 126s r-cran-broom r-cran-rmysql r-cran-future w3m | www-browser r-cran-unitizer 126s r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo r-cran-cairo 126s r-cran-markdown r-cran-ragg r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf 126s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 126s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 126s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-usethis 126s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 126s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 126s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 126s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 127s The following packages will be REMOVED: 127s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 127s The following NEW packages will be installed: 127s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 127s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 127s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 127s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 127s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 127s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 127s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 127s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 127s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 127s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 127s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 127s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 127s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 127s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 127s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 127s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 127s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 127s libjs-popper.js libjs-prettify libjs-sifter.js 127s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 127s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 127s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 127s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 127s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 127s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 127s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 127s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 127s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 127s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 127s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 127s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 127s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi 127s r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase 127s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 127s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 127s r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub 127s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 127s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase 127s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 127s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 127s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 127s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 127s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 127s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 127s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 127s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 127s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 127s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 127s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 127s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 127s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-jquerylib 127s r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice 127s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr 127s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 127s r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png 127s r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 127s r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rjson 127s r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass 127s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 127s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 127s r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 127s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 127s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 127s xdg-utils zip zlib1g-dev 127s The following packages will be upgraded: 127s curl 127s 1 upgraded, 295 newly installed, 5 to remove and 0 not upgraded. 127s Need to get 430 MB/430 MB of archives. 127s After this operation, 1355 MB of additional disk space will be used. 127s Get:1 /tmp/autopkgtest.LFDc3W/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [856 B] 127s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 127s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 127s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 127s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 127s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 127s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 127s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 127s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 127s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 127s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 127s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 127s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 127s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 127s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 127s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 127s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 128s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 128s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 128s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 128s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 128s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 128s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 128s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 128s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 128s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 128s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 128s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 128s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 128s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 128s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 128s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 128s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 128s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 128s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 128s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 129s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 129s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 129s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 129s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 129s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 129s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 129s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 129s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 129s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 129s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 129s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 129s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 129s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 129s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 129s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 129s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 129s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 129s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 129s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 129s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 129s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 129s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 129s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 129s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 129s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 129s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 129s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 129s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 130s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 130s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 130s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 130s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 130s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 130s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 130s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 130s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 130s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 130s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 130s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 130s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 130s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 130s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 130s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 130s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 130s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 130s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 130s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 130s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 130s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 130s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 130s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 130s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 130s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 130s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 130s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 130s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 130s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 130s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 130s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 130s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 130s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 130s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 130s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 130s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 130s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 130s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 131s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 131s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 131s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 131s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 131s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 131s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 131s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 131s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 131s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 131s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 131s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 131s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 131s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 131s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 131s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 131s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 131s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 131s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 131s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 131s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 131s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 131s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 131s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 131s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 131s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 131s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 131s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 131s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 131s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 131s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 131s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 131s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 131s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 131s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 131s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 131s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 131s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 131s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 131s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 131s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 131s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 131s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 132s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 132s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 132s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 132s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 132s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 132s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 132s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 133s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 133s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 133s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 133s Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 133s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 133s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 133s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 133s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 133s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 133s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 134s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 134s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 134s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 134s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 134s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 134s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 134s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 134s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 134s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 134s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 134s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 134s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 134s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 134s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 134s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 134s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 134s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 134s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 134s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 134s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 134s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 134s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 134s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 134s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 134s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 134s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 134s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 134s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 134s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 134s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 134s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 135s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 135s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 135s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 135s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 135s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 135s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 135s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 135s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 135s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 135s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 135s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 135s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 136s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 136s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 136s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 136s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 136s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 136s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 136s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 136s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 136s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 136s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 136s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 136s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 136s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 136s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 136s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 136s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 136s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 136s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 136s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 136s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 136s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 136s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 136s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 136s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 136s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 136s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 136s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 136s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 136s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 136s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 136s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 136s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 137s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 137s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 137s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 137s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 137s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 137s Get:242 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 137s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 137s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 137s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 137s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 137s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 137s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 137s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 137s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 137s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 137s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 137s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 137s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 137s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 137s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 137s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 137s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 137s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 137s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 137s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 137s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 137s Get:263 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 137s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 138s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 138s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 138s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 141s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 141s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 141s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 141s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 141s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 141s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 141s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 141s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 141s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 141s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 141s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 141s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 141s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 141s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 141s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 141s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 141s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 141s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 141s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 141s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 141s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 141s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 141s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 142s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 142s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 142s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 142s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-experimenthub all 2.10.0+ds-1 [79.9 kB] 142s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 142s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 144s Preconfiguring packages ... 144s Fetched 430 MB in 15s (27.9 MB/s) 144s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 144s wget depends on libpsl5 (>= 0.16.0). 144s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 144s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 144s 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 145s Removing libpsl5:arm64 (0.21.2-1build1) ... 145s Selecting previously unselected package libpsl5t64:arm64. 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 145s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 145s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 145s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 145s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 145s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 145s Selecting previously unselected package libcurl4t64:arm64. 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 145s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 145s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 145s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 145s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 145s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 145s 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 145s Removing libpng16-16:arm64 (1.6.43-1) ... 145s Selecting previously unselected package libpng16-16t64:arm64. 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 145s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 145s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 145s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 145s parted depends on libreadline8 (>= 6.0). 145s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 145s gpgsm depends on libreadline8 (>= 6.0). 145s gpgconf depends on libreadline8 (>= 6.0). 145s gpg depends on libreadline8 (>= 6.0). 145s gawk depends on libreadline8 (>= 6.0). 145s fdisk depends on libreadline8 (>= 6.0). 145s 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 146s Removing libreadline8:arm64 (8.2-3) ... 146s Selecting previously unselected package libreadline8t64:arm64. 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 146s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 146s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 146s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 146s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 146s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 146s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 146s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 146s lsof depends on libtirpc3 (>= 1.0.2). 146s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 146s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 146s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 146s iproute2 depends on libtirpc3 (>= 1.0.2). 146s 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 146s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 146s Selecting previously unselected package libtirpc3t64:arm64. 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 146s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 146s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 146s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 146s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 146s Selecting previously unselected package libc-dev-bin. 146s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 146s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 146s Selecting previously unselected package linux-libc-dev:arm64. 146s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 146s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 147s Selecting previously unselected package libcrypt-dev:arm64. 147s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 147s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 147s Selecting previously unselected package libtirpc-dev:arm64. 147s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 147s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 147s Selecting previously unselected package libnsl-dev:arm64. 147s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 147s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 147s Selecting previously unselected package rpcsvc-proto. 148s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 148s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 148s Selecting previously unselected package libc6-dev:arm64. 148s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 148s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 148s Selecting previously unselected package libisl23:arm64. 148s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 148s Unpacking libisl23:arm64 (0.26-3) ... 148s Selecting previously unselected package libmpc3:arm64. 148s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 148s Unpacking libmpc3:arm64 (1.3.1-1) ... 148s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 148s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 148s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 148s Selecting previously unselected package cpp-13. 148s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 148s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 148s Selecting previously unselected package cpp-aarch64-linux-gnu. 148s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 148s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 149s Selecting previously unselected package cpp. 149s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 149s Unpacking cpp (4:13.2.0-7ubuntu1) ... 149s Selecting previously unselected package libcc1-0:arm64. 149s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 149s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package libgomp1:arm64. 149s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 149s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package libitm1:arm64. 149s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 149s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package libatomic1:arm64. 149s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 149s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package libasan8:arm64. 149s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 149s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package liblsan0:arm64. 149s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 149s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package libtsan2:arm64. 149s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 149s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package libubsan1:arm64. 149s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 149s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package libhwasan0:arm64. 149s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 149s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package libgcc-13-dev:arm64. 149s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 149s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 149s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 149s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 149s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 150s Selecting previously unselected package gcc-13. 150s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 150s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 150s Selecting previously unselected package gcc-aarch64-linux-gnu. 150s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 150s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 150s Selecting previously unselected package gcc. 150s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 150s Unpacking gcc (4:13.2.0-7ubuntu1) ... 150s Selecting previously unselected package libstdc++-13-dev:arm64. 150s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 150s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 150s Selecting previously unselected package g++-13-aarch64-linux-gnu. 150s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 150s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 150s Selecting previously unselected package g++-13. 150s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 150s Unpacking g++-13 (13.2.0-17ubuntu2) ... 150s Selecting previously unselected package g++-aarch64-linux-gnu. 150s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 150s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 150s Selecting previously unselected package g++. 150s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 150s Unpacking g++ (4:13.2.0-7ubuntu1) ... 151s Selecting previously unselected package build-essential. 151s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 151s Unpacking build-essential (12.10ubuntu1) ... 151s Selecting previously unselected package dctrl-tools. 151s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 151s Unpacking dctrl-tools (2.24-3build2) ... 151s Selecting previously unselected package fonts-dejavu-mono. 151s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 151s Unpacking fonts-dejavu-mono (2.37-8) ... 151s Selecting previously unselected package fonts-dejavu-core. 151s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 151s Unpacking fonts-dejavu-core (2.37-8) ... 151s Selecting previously unselected package fontconfig-config. 151s Preparing to unpack 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fonts-lmodern. 152s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 152s Unpacking fonts-lmodern (2.005-1) ... 152s Selecting previously unselected package fonts-mathjax. 152s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 152s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 152s Selecting previously unselected package libgfortran5:arm64. 152s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 152s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 152s Selecting previously unselected package libgfortran-13-dev:arm64. 152s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 152s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 152s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 153s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 153s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 153s Selecting previously unselected package gfortran-13. 153s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 153s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 153s Selecting previously unselected package gfortran-aarch64-linux-gnu. 153s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 153s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 153s Selecting previously unselected package gfortran. 153s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 153s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 153s Selecting previously unselected package icu-devtools. 153s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 153s Unpacking icu-devtools (74.2-1ubuntu1) ... 153s Selecting previously unselected package javascript-common. 153s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 153s Unpacking javascript-common (11+nmu1) ... 153s Selecting previously unselected package libio-string-perl. 153s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 153s Unpacking libio-string-perl (1.08-4) ... 153s Selecting previously unselected package liblatex-tounicode-perl. 153s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 153s Unpacking liblatex-tounicode-perl (0.54-2) ... 153s Selecting previously unselected package libbibtex-parser-perl. 153s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 153s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 153s Selecting previously unselected package libblas3:arm64. 154s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 154s Unpacking libblas3:arm64 (3.12.0-3) ... 154s Selecting previously unselected package libblas-dev:arm64. 154s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 154s Unpacking libblas-dev:arm64 (3.12.0-3) ... 154s Selecting previously unselected package libboost1.83-dev:arm64. 154s Preparing to unpack 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libharfbuzz0b:arm64. 157s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 157s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 157s Selecting previously unselected package x11-common. 157s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 157s Unpacking x11-common (1:7.7+23ubuntu2) ... 157s Selecting previously unselected package libice6:arm64. 157s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 157s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 157s Selecting previously unselected package libicu-dev:arm64. 157s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 157s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 158s Selecting previously unselected package libjpeg-turbo8:arm64. 158s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 158s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 158s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 158s Preparing to unpack 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package libjs-jquery-datatables. 159s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 159s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 159s Selecting previously unselected package libjs-jquery-datatables-extensions. 159s Preparing to unpack .../085-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 159s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 159s Selecting previously unselected package libjs-sifter.js. 159s Preparing to unpack .../086-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 159s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 159s Selecting previously unselected package libjs-microplugin.js. 159s Preparing to unpack .../087-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 159s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 159s Selecting previously unselected package libjs-jquery-selectize.js. 159s Preparing to unpack .../088-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb 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(2023.20230311.66589-9) ... 160s Selecting previously unselected package liblapack3:arm64. 160s Preparing to unpack .../094-liblapack3_3.12.0-3_arm64.deb ... 160s Unpacking liblapack3:arm64 (3.12.0-3) ... 160s Selecting previously unselected package liblapack-dev:arm64. 160s Preparing to unpack .../095-liblapack-dev_3.12.0-3_arm64.deb ... 160s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 160s Selecting previously unselected package liblerc4:arm64. 160s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 160s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 160s Selecting previously unselected package liblua5.4-0:arm64. 160s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_arm64.deb ... 160s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 160s Selecting previously unselected package libncurses-dev:arm64. 160s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 160s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 160s Selecting previously unselected package libthai-data. 160s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 160s Unpacking libthai-data (0.1.29-2) ... 160s Selecting previously unselected package libthai0:arm64. 161s Preparing to unpack .../100-libthai0_0.1.29-2_arm64.deb ... 161s Unpacking libthai0:arm64 (0.1.29-2) ... 161s Selecting previously unselected package libpango-1.0-0:arm64. 161s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 161s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 161s Selecting previously unselected package libpangoft2-1.0-0:arm64. 161s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 161s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 161s Selecting previously unselected package libpangocairo-1.0-0:arm64. 161s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 161s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 161s Selecting previously unselected package libpaper1:arm64. 161s Preparing to unpack .../104-libpaper1_1.1.29_arm64.deb ... 161s Unpacking libpaper1:arm64 (1.1.29) ... 161s Selecting previously unselected package libpaper-utils. 161s Preparing to unpack .../105-libpaper-utils_1.1.29_arm64.deb ... 161s Unpacking libpaper-utils (1.1.29) ... 161s Selecting previously unselected package libpcre2-16-0:arm64. 161s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 161s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 161s Selecting previously unselected package libpcre2-32-0:arm64. 161s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 161s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 161s Selecting previously unselected package libpcre2-posix3:arm64. 161s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 161s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 161s Selecting previously unselected package libpcre2-dev:arm64. 161s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 161s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 161s Selecting previously unselected package libpkgconf3:arm64. 161s Preparing to unpack .../110-libpkgconf3_1.8.1-2_arm64.deb ... 161s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 161s Selecting previously unselected package zlib1g-dev:arm64. 161s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 161s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 161s Selecting previously unselected package libpng-dev:arm64. 161s Preparing to unpack .../112-libpng-dev_1.6.43-3_arm64.deb ... 161s Unpacking libpng-dev:arm64 (1.6.43-3) ... 161s Selecting previously unselected package libpotrace0:arm64. 161s Preparing to unpack .../113-libpotrace0_1.16-2_arm64.deb ... 161s Unpacking libpotrace0:arm64 (1.16-2) ... 161s Selecting previously unselected package libptexenc1:arm64. 161s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_arm64.deb ... 161s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 161s Selecting previously unselected package libreadline-dev:arm64. 161s Preparing to unpack .../115-libreadline-dev_8.2-3.1_arm64.deb ... 161s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 161s Selecting previously unselected package libsharpyuv0:arm64. 162s Preparing to unpack .../116-libsharpyuv0_1.3.2-0.4_arm64.deb ... 162s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 162s Selecting previously unselected package libsm6:arm64. 162s Preparing to unpack .../117-libsm6_2%3a1.2.3-1build2_arm64.deb ... 162s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 163s Selecting previously unselected package libsynctex2:arm64. 163s Preparing to unpack .../118-libsynctex2_2023.20230311.66589-9_arm64.deb ... 163s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 163s Selecting previously unselected package libtcl8.6:arm64. 163s Preparing to unpack .../119-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 163s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 163s Selecting previously unselected package libteckit0:arm64. 163s Preparing to unpack .../120-libteckit0_2.5.12+ds1-1_arm64.deb ... 163s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 163s Selecting previously unselected package libtexlua53-5:arm64. 163s Preparing to unpack .../121-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 163s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 163s Selecting previously unselected package libjbig0:arm64. 164s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 164s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 164s Selecting previously unselected package libwebp7:arm64. 164s Preparing to unpack .../123-libwebp7_1.3.2-0.4_arm64.deb ... 164s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 164s Selecting previously unselected package libtiff6:arm64. 164s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 164s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 164s Selecting previously unselected package libxft2:arm64. 165s Preparing to unpack .../125-libxft2_2.3.6-1_arm64.deb ... 165s Unpacking libxft2:arm64 (2.3.6-1) ... 165s Selecting previously unselected package libxss1:arm64. 165s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_arm64.deb ... 165s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 165s Selecting previously unselected package libtk8.6:arm64. 165s Preparing to unpack .../127-libtk8.6_8.6.13-2_arm64.deb ... 165s Unpacking libtk8.6:arm64 (8.6.13-2) ... 165s Selecting previously unselected package libxt6t64:arm64. 165s Preparing to unpack .../128-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 165s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 165s Selecting previously unselected package libxmu6:arm64. 165s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_arm64.deb ... 165s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 165s Selecting previously unselected package libxpm4:arm64. 166s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_arm64.deb ... 166s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 166s Selecting previously unselected package libxaw7:arm64. 166s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_arm64.deb ... 166s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 166s Selecting previously unselected package libxi6:arm64. 166s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_arm64.deb ... 166s Unpacking libxi6:arm64 (2:1.8.1-1) ... 166s Selecting previously unselected package libzzip-0-13:arm64. 167s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 167s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 167s Selecting previously unselected package zip. 167s Preparing to unpack .../134-zip_3.0-13_arm64.deb ... 167s Unpacking zip (3.0-13) ... 167s Selecting previously unselected package unzip. 167s Preparing to unpack .../135-unzip_6.0-28ubuntu3_arm64.deb ... 167s Unpacking unzip (6.0-28ubuntu3) ... 167s Selecting previously unselected package xdg-utils. 167s Preparing to unpack .../136-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 167s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 167s Selecting previously unselected package r-base-core. 167s Preparing to unpack .../137-r-base-core_4.3.3-2build1_arm64.deb ... 167s Unpacking r-base-core (4.3.3-2build1) ... 167s Selecting previously unselected package r-cran-littler. 167s Preparing to unpack .../138-r-cran-littler_0.3.19-1_arm64.deb ... 167s Unpacking r-cran-littler (0.3.19-1) ... 167s Selecting previously unselected package littler. 167s Preparing to unpack .../139-littler_0.3.19-1_all.deb ... 167s Unpacking littler (0.3.19-1) ... 167s Selecting previously unselected package node-bootstrap-sass. 167s Preparing to unpack .../140-node-bootstrap-sass_3.4.3-2_all.deb ... 167s Unpacking node-bootstrap-sass (3.4.3-2) ... 167s Selecting previously unselected package node-html5shiv. 168s Preparing to unpack .../141-node-html5shiv_3.7.3+dfsg-5_all.deb ... 168s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 168s Selecting previously unselected package node-normalize.css. 168s Preparing to unpack .../142-node-normalize.css_8.0.1-5_all.deb ... 168s Unpacking node-normalize.css (8.0.1-5) ... 168s Selecting previously unselected package pandoc-data. 168s Preparing to unpack .../143-pandoc-data_3.1.3-1_all.deb ... 168s Unpacking pandoc-data (3.1.3-1) ... 168s Selecting previously unselected package pandoc. 168s Preparing to unpack .../144-pandoc_3.1.3+ds-2_arm64.deb ... 168s Unpacking pandoc (3.1.3+ds-2) ... 169s Selecting previously unselected package pkgconf-bin. 169s Preparing to unpack .../145-pkgconf-bin_1.8.1-2_arm64.deb ... 169s Unpacking pkgconf-bin (1.8.1-2) ... 169s Selecting previously unselected package pkgconf:arm64. 169s Preparing to unpack .../146-pkgconf_1.8.1-2_arm64.deb ... 169s Unpacking pkgconf:arm64 (1.8.1-2) ... 169s Selecting previously unselected package pkg-config:arm64. 169s Preparing to unpack .../147-pkg-config_1.8.1-2_arm64.deb ... 169s Unpacking pkg-config:arm64 (1.8.1-2) ... 169s Selecting previously unselected package liblzma-dev:arm64. 169s Preparing to unpack .../148-liblzma-dev_5.4.5-0.3_arm64.deb ... 169s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 169s Selecting previously unselected package r-base-dev. 169s Preparing to unpack .../149-r-base-dev_4.3.3-2build1_all.deb ... 169s Unpacking r-base-dev (4.3.3-2build1) ... 169s Selecting previously unselected package pkg-r-autopkgtest. 169s Preparing to unpack .../150-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 169s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 169s Selecting previously unselected package r-bioc-biocgenerics. 169s Preparing to unpack .../151-r-bioc-biocgenerics_0.48.1-2_all.deb ... 169s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 169s Selecting previously unselected package r-bioc-biobase. 169s Preparing to unpack .../152-r-bioc-biobase_2.62.0-1_arm64.deb ... 169s Unpacking r-bioc-biobase (2.62.0-1) ... 169s Selecting previously unselected package r-bioc-s4vectors. 169s Preparing to unpack .../153-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 169s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 169s Selecting previously unselected package r-bioc-iranges. 169s Preparing to unpack .../154-r-bioc-iranges_2.36.0-1_arm64.deb ... 169s Unpacking r-bioc-iranges (2.36.0-1) ... 170s Selecting previously unselected package r-cran-dbi. 170s Preparing to unpack .../155-r-cran-dbi_1.2.2-1_all.deb ... 170s Unpacking r-cran-dbi (1.2.2-1) ... 170s Selecting previously unselected package r-cran-bit. 170s Preparing to unpack .../156-r-cran-bit_4.0.5-1_arm64.deb ... 170s Unpacking r-cran-bit (4.0.5-1) ... 170s Selecting previously unselected package r-cran-bit64. 170s Preparing to unpack .../157-r-cran-bit64_4.0.5-1_arm64.deb ... 170s Unpacking r-cran-bit64 (4.0.5-1) ... 171s Selecting previously unselected package r-cran-rlang. 171s Preparing to unpack .../158-r-cran-rlang_1.1.3-1_arm64.deb ... 171s Unpacking r-cran-rlang (1.1.3-1) ... 171s Selecting previously unselected package r-cran-cli. 172s Preparing to unpack .../159-r-cran-cli_3.6.2-1_arm64.deb ... 172s Unpacking r-cran-cli (3.6.2-1) ... 172s Selecting previously unselected package r-cran-glue. 172s Preparing to unpack .../160-r-cran-glue_1.7.0-1_arm64.deb ... 172s Unpacking r-cran-glue (1.7.0-1) ... 172s Selecting previously unselected package r-cran-lifecycle. 172s Preparing to unpack .../161-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 172s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 172s Selecting previously unselected package r-cran-vctrs. 173s Preparing to unpack .../162-r-cran-vctrs_0.6.5-1_arm64.deb ... 173s Unpacking r-cran-vctrs (0.6.5-1) ... 173s Selecting previously unselected package r-cran-blob. 181s Preparing to unpack .../163-r-cran-blob_1.2.4-1_all.deb ... 181s Unpacking r-cran-blob (1.2.4-1) ... 181s Selecting previously unselected package r-cran-fastmap. 182s Preparing to unpack .../164-r-cran-fastmap_1.1.1-1_arm64.deb ... 182s Unpacking r-cran-fastmap (1.1.1-1) ... 182s Selecting previously unselected package r-cran-cachem. 182s Preparing to unpack .../165-r-cran-cachem_1.0.8-1_arm64.deb ... 182s Unpacking r-cran-cachem (1.0.8-1) ... 182s Selecting previously unselected package r-cran-memoise. 183s Preparing to unpack .../166-r-cran-memoise_2.0.1-1_all.deb ... 183s Unpacking r-cran-memoise (2.0.1-1) ... 183s Selecting previously unselected package r-cran-pkgconfig. 183s Preparing to unpack .../167-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 183s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 183s Selecting previously unselected package r-cran-plogr. 183s Preparing to unpack .../168-r-cran-plogr_0.2.0-3build1_all.deb ... 183s Unpacking r-cran-plogr (0.2.0-3build1) ... 183s Selecting previously unselected package r-cran-cpp11. 183s Preparing to unpack .../169-r-cran-cpp11_0.4.7-1_all.deb ... 183s Unpacking r-cran-cpp11 (0.4.7-1) ... 183s Selecting previously unselected package r-cran-rsqlite. 183s Preparing to unpack .../170-r-cran-rsqlite_2.3.4-1_arm64.deb ... 183s Unpacking r-cran-rsqlite (2.3.4-1) ... 183s Selecting previously unselected package r-cran-curl. 183s Preparing to unpack .../171-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 183s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 183s Selecting previously unselected package r-cran-jsonlite. 183s Preparing to unpack .../172-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 183s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 183s Selecting previously unselected package r-cran-mime. 183s Preparing to unpack .../173-r-cran-mime_0.12-1_arm64.deb ... 183s Unpacking r-cran-mime (0.12-1) ... 183s Selecting previously unselected package r-cran-sys. 183s Preparing to unpack .../174-r-cran-sys_3.4.2-1_arm64.deb ... 183s Unpacking r-cran-sys (3.4.2-1) ... 183s Selecting previously unselected package r-cran-askpass. 183s Preparing to unpack .../175-r-cran-askpass_1.2.0-1_arm64.deb ... 183s Unpacking r-cran-askpass (1.2.0-1) ... 183s Selecting previously unselected package r-cran-openssl. 183s Preparing to unpack .../176-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 183s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 183s Selecting previously unselected package r-cran-r6. 183s Preparing to unpack .../177-r-cran-r6_2.5.1-1_all.deb ... 183s Unpacking r-cran-r6 (2.5.1-1) ... 183s Selecting previously unselected package r-cran-httr. 183s Preparing to unpack .../178-r-cran-httr_1.4.7+dfsg-1_all.deb ... 183s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 183s Selecting previously unselected package r-cran-png. 183s Preparing to unpack .../179-r-cran-png_0.1-8-1_arm64.deb ... 183s Unpacking r-cran-png (0.1-8-1) ... 183s Selecting previously unselected package r-bioc-zlibbioc. 183s Preparing to unpack .../180-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 183s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 183s Selecting previously unselected package r-bioc-xvector. 184s Preparing to unpack .../181-r-bioc-xvector_0.42.0-1_arm64.deb ... 184s Unpacking r-bioc-xvector (0.42.0-1) ... 184s Selecting previously unselected package r-cran-bitops. 184s Preparing to unpack .../182-r-cran-bitops_1.0-7-1_arm64.deb ... 184s Unpacking r-cran-bitops (1.0-7-1) ... 184s Selecting previously unselected package r-cran-rcurl. 184s Preparing to unpack .../183-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 184s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 184s Selecting previously unselected package r-bioc-genomeinfodbdata. 184s Preparing to unpack .../184-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 184s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 184s Selecting previously unselected package r-bioc-genomeinfodb. 184s Preparing to unpack .../185-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 184s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 184s Selecting previously unselected package r-cran-crayon. 184s Preparing to unpack .../186-r-cran-crayon_1.5.2-1_all.deb ... 184s Unpacking r-cran-crayon (1.5.2-1) ... 185s Selecting previously unselected package r-bioc-biostrings. 185s Preparing to unpack .../187-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 185s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 185s Selecting previously unselected package r-bioc-keggrest. 185s Preparing to unpack .../188-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 185s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 185s Selecting previously unselected package r-bioc-annotationdbi. 185s Preparing to unpack .../189-r-bioc-annotationdbi_1.64.1-1_all.deb ... 185s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 185s Selecting previously unselected package r-bioc-genomicranges. 185s Preparing to unpack .../190-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 185s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 185s Selecting previously unselected package r-cran-lazyeval. 185s Preparing to unpack .../191-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 185s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 185s Selecting previously unselected package r-bioc-annotationfilter. 185s Preparing to unpack .../192-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 185s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 185s Selecting previously unselected package r-cran-generics. 185s Preparing to unpack .../193-r-cran-generics_0.1.3-1_all.deb ... 185s Unpacking r-cran-generics (0.1.3-1) ... 185s Selecting previously unselected package r-cran-magrittr. 185s Preparing to unpack .../194-r-cran-magrittr_2.0.3-1_arm64.deb ... 185s Unpacking r-cran-magrittr (2.0.3-1) ... 185s Selecting previously unselected package r-cran-fansi. 185s Preparing to unpack .../195-r-cran-fansi_1.0.5-1_arm64.deb ... 185s Unpacking r-cran-fansi (1.0.5-1) ... 185s Selecting previously unselected package r-cran-utf8. 185s Preparing to unpack .../196-r-cran-utf8_1.2.4-1_arm64.deb ... 185s Unpacking r-cran-utf8 (1.2.4-1) ... 185s Selecting previously unselected package r-cran-pillar. 186s Preparing to unpack .../197-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 186s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 186s Selecting previously unselected package r-cran-tibble. 186s Preparing to unpack .../198-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 186s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 186s Selecting previously unselected package r-cran-withr. 186s Preparing to unpack .../199-r-cran-withr_2.5.0-1_all.deb ... 186s Unpacking r-cran-withr (2.5.0-1) ... 186s Selecting previously unselected package r-cran-tidyselect. 186s Preparing to unpack .../200-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 186s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 186s Selecting previously unselected package r-cran-dplyr. 186s Preparing to unpack .../201-r-cran-dplyr_1.1.4-1_arm64.deb ... 186s Unpacking r-cran-dplyr (1.1.4-1) ... 186s Selecting previously unselected package r-cran-purrr. 186s Preparing to unpack .../202-r-cran-purrr_1.0.2-1_arm64.deb ... 186s Unpacking r-cran-purrr (1.0.2-1) ... 186s Selecting previously unselected package r-cran-stringi. 186s Preparing to unpack .../203-r-cran-stringi_1.8.3-1_arm64.deb ... 186s Unpacking r-cran-stringi (1.8.3-1) ... 186s Selecting previously unselected package r-cran-stringr. 186s Preparing to unpack .../204-r-cran-stringr_1.5.1-1_all.deb ... 186s Unpacking r-cran-stringr (1.5.1-1) ... 186s Selecting previously unselected package r-cran-tidyr. 186s Preparing to unpack .../205-r-cran-tidyr_1.3.1-1_arm64.deb ... 186s Unpacking r-cran-tidyr (1.3.1-1) ... 186s Selecting previously unselected package r-cran-dbplyr. 186s Preparing to unpack .../206-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 186s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 186s Selecting previously unselected package r-cran-filelock. 186s Preparing to unpack .../207-r-cran-filelock_1.0.3-1_arm64.deb ... 186s Unpacking r-cran-filelock (1.0.3-1) ... 186s Selecting previously unselected package r-bioc-biocfilecache. 186s Preparing to unpack .../208-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 186s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 186s Selecting previously unselected package r-cran-biocmanager. 186s Preparing to unpack .../209-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 186s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 186s Selecting previously unselected package r-bioc-biocversion. 186s Preparing to unpack .../210-r-bioc-biocversion_3.18.1-1_all.deb ... 186s Unpacking r-bioc-biocversion (3.18.1-1) ... 186s Selecting previously unselected package r-cran-rappdirs. 186s Preparing to unpack .../211-r-cran-rappdirs_0.3.3-1_arm64.deb ... 186s Unpacking r-cran-rappdirs (0.3.3-1) ... 186s Selecting previously unselected package r-cran-yaml. 186s Preparing to unpack .../212-r-cran-yaml_2.3.8-1_arm64.deb ... 186s Unpacking r-cran-yaml (2.3.8-1) ... 186s Selecting previously unselected package r-cran-pkgkitten. 186s Preparing to unpack .../213-r-cran-pkgkitten_0.2.3-1_all.deb ... 186s Unpacking r-cran-pkgkitten (0.2.3-1) ... 186s Selecting previously unselected package r-cran-rcpp. 186s Preparing to unpack .../214-r-cran-rcpp_1.0.12-1_arm64.deb ... 186s Unpacking r-cran-rcpp (1.0.12-1) ... 187s Selecting previously unselected package r-cran-later. 187s Preparing to unpack .../215-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 187s Unpacking r-cran-later (1.3.2+dfsg-1) ... 187s Selecting previously unselected package r-cran-promises. 187s Preparing to unpack .../216-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 187s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 187s Selecting previously unselected package r-cran-httpuv. 187s Preparing to unpack .../217-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 187s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 187s Selecting previously unselected package r-cran-xtable. 187s Preparing to unpack .../218-r-cran-xtable_1%3a1.8-4-2_all.deb ... 187s Unpacking r-cran-xtable (1:1.8-4-2) ... 187s Selecting previously unselected package r-cran-base64enc. 187s Preparing to unpack .../219-r-cran-base64enc_0.1-3-3_arm64.deb ... 187s Unpacking r-cran-base64enc (0.1-3-3) ... 187s Selecting previously unselected package r-cran-digest. 187s Preparing to unpack .../220-r-cran-digest_0.6.34-1_arm64.deb ... 187s Unpacking r-cran-digest (0.6.34-1) ... 187s Selecting previously unselected package r-cran-ellipsis. 187s Preparing to unpack .../221-r-cran-ellipsis_0.3.2-2_arm64.deb ... 187s Unpacking r-cran-ellipsis (0.3.2-2) ... 187s Selecting previously unselected package r-cran-htmltools. 187s Preparing to unpack .../222-r-cran-htmltools_0.5.7-1_arm64.deb ... 187s Unpacking r-cran-htmltools (0.5.7-1) ... 187s Selecting previously unselected package r-cran-fontawesome. 187s Preparing to unpack .../223-r-cran-fontawesome_0.5.2-1_all.deb ... 187s Unpacking r-cran-fontawesome (0.5.2-1) ... 187s Selecting previously unselected package r-cran-sourcetools. 187s Preparing to unpack .../224-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 187s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 187s Selecting previously unselected package r-cran-commonmark. 187s Preparing to unpack .../225-r-cran-commonmark_1.9.1-1_arm64.deb ... 187s Unpacking r-cran-commonmark (1.9.1-1) ... 187s Selecting previously unselected package r-cran-jquerylib. 188s Preparing to unpack .../226-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 188s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 188s Selecting previously unselected package r-cran-fs. 188s Preparing to unpack .../227-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 188s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 188s Selecting previously unselected package r-cran-sass. 188s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 188s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 188s Selecting previously unselected package r-cran-bslib. 188s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 188s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 188s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 188s Preparing to unpack .../230-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 188s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 188s Selecting previously unselected package r-cran-shiny. 188s Preparing to unpack .../231-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 188s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 188s Selecting previously unselected package r-cran-evaluate. 188s Preparing to unpack .../232-r-cran-evaluate_0.23-1_all.deb ... 188s Unpacking r-cran-evaluate (0.23-1) ... 188s Selecting previously unselected package r-cran-xfun. 188s Preparing to unpack .../233-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 188s Unpacking r-cran-xfun (0.41+dfsg-1) ... 188s Selecting previously unselected package r-cran-highr. 188s Preparing to unpack .../234-r-cran-highr_0.10+dfsg-1_all.deb ... 188s Unpacking r-cran-highr (0.10+dfsg-1) ... 188s Selecting previously unselected package libjs-mathjax. 188s Preparing to unpack .../235-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 188s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 189s Selecting previously unselected package r-cran-knitr. 189s Preparing to unpack .../236-r-cran-knitr_1.45+dfsg-1_all.deb ... 189s Unpacking r-cran-knitr (1.45+dfsg-1) ... 189s Selecting previously unselected package r-cran-tinytex. 189s Preparing to unpack .../237-r-cran-tinytex_0.49-1_all.deb ... 189s Unpacking r-cran-tinytex (0.49-1) ... 189s Selecting previously unselected package libjs-modernizr. 189s Preparing to unpack .../238-libjs-modernizr_2.6.2+ds1-5_all.deb ... 189s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 189s Selecting previously unselected package r-cran-rmarkdown. 189s Preparing to unpack .../239-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 189s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 189s Selecting previously unselected package r-cran-htmlwidgets. 189s Preparing to unpack .../240-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 189s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 189s Selecting previously unselected package r-cran-crosstalk. 189s Preparing to unpack .../241-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 189s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 189s Selecting previously unselected package r-cran-dt. 189s Preparing to unpack .../242-r-cran-dt_0.31+dfsg-1_all.deb ... 189s Unpacking r-cran-dt (0.31+dfsg-1) ... 189s Selecting previously unselected package r-bioc-interactivedisplaybase. 189s Preparing to unpack .../243-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 189s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 189s Selecting previously unselected package r-bioc-annotationhub. 189s Preparing to unpack .../244-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 189s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 189s Selecting previously unselected package r-bioc-biocio. 190s Preparing to unpack .../245-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 190s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 190s Selecting previously unselected package r-cran-formatr. 190s Preparing to unpack .../246-r-cran-formatr_1.14-1_all.deb ... 190s Unpacking r-cran-formatr (1.14-1) ... 190s Selecting previously unselected package r-cran-lambda.r. 190s Preparing to unpack .../247-r-cran-lambda.r_1.2.4-2build1_all.deb ... 190s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 190s Selecting previously unselected package r-cran-futile.options. 190s Preparing to unpack .../248-r-cran-futile.options_1.0.1-3build1_all.deb ... 190s Unpacking r-cran-futile.options (1.0.1-3build1) ... 190s Selecting previously unselected package r-cran-futile.logger. 190s Preparing to unpack .../249-r-cran-futile.logger_1.4.3-4build1_all.deb ... 190s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 190s Selecting previously unselected package r-cran-snow. 190s Preparing to unpack .../250-r-cran-snow_1%3a0.4.4-2_all.deb ... 190s Unpacking r-cran-snow (1:0.4.4-2) ... 190s Selecting previously unselected package r-cran-codetools. 190s Preparing to unpack .../251-r-cran-codetools_0.2-19-1_all.deb ... 190s Unpacking r-cran-codetools (0.2-19-1) ... 190s Selecting previously unselected package r-cran-bh. 190s Preparing to unpack .../252-r-cran-bh_1.84.0-1_all.deb ... 190s Unpacking r-cran-bh (1.84.0-1) ... 190s Selecting previously unselected package r-bioc-biocparallel. 190s Preparing to unpack .../253-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 190s Unpacking r-bioc-biocparallel (1.36.0-1) ... 190s Selecting previously unselected package r-cran-bookdown. 190s Preparing to unpack .../254-r-cran-bookdown_0.37+dfsg-1_all.deb ... 190s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 190s Selecting previously unselected package tex-common. 190s Preparing to unpack .../255-tex-common_6.18_all.deb ... 190s Unpacking tex-common (6.18) ... 190s Selecting previously unselected package t1utils. 190s Preparing to unpack .../256-t1utils_1.41-4build2_arm64.deb ... 190s Unpacking t1utils (1.41-4build2) ... 190s Selecting previously unselected package texlive-binaries. 190s Preparing to unpack .../257-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 190s Unpacking texlive-binaries (2023.20230311.66589-9) ... 191s Selecting previously unselected package texlive-base. 191s Preparing to unpack .../258-texlive-base_2023.20240207-1_all.deb ... 191s Unpacking texlive-base (2023.20240207-1) ... 192s Selecting previously unselected package texlive-latex-base. 192s Preparing to unpack .../259-texlive-latex-base_2023.20240207-1_all.deb ... 192s Unpacking texlive-latex-base (2023.20240207-1) ... 192s Selecting previously unselected package texlive-bibtex-extra. 192s Preparing to unpack .../260-texlive-bibtex-extra_2023.20240207-1_all.deb ... 192s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 195s Selecting previously unselected package r-bioc-biocstyle. 195s Preparing to unpack .../261-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 195s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 195s Selecting previously unselected package r-cran-xml. 195s Preparing to unpack .../262-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 195s Unpacking r-cran-xml (3.99-0.16.1-1) ... 195s Selecting previously unselected package r-cran-hms. 195s Preparing to unpack .../263-r-cran-hms_1.1.3-1_all.deb ... 195s Unpacking r-cran-hms (1.1.3-1) ... 195s Selecting previously unselected package r-cran-prettyunits. 195s Preparing to unpack .../264-r-cran-prettyunits_1.2.0-1_all.deb ... 195s Unpacking r-cran-prettyunits (1.2.0-1) ... 195s Selecting previously unselected package r-cran-progress. 195s Preparing to unpack .../265-r-cran-progress_1.2.3-1_all.deb ... 195s Unpacking r-cran-progress (1.2.3-1) ... 195s Selecting previously unselected package r-cran-xml2. 195s Preparing to unpack .../266-r-cran-xml2_1.3.6-1_arm64.deb ... 195s Unpacking r-cran-xml2 (1.3.6-1) ... 195s Selecting previously unselected package r-bioc-biomart. 195s Preparing to unpack .../267-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 195s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 195s Selecting previously unselected package r-bioc-rhtslib. 195s Preparing to unpack .../268-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 195s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 195s Selecting previously unselected package r-bioc-rsamtools. 195s Preparing to unpack .../269-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 195s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 195s Selecting previously unselected package r-cran-matrixstats. 195s Preparing to unpack .../270-r-cran-matrixstats_1.2.0-1_arm64.deb ... 195s Unpacking r-cran-matrixstats (1.2.0-1) ... 196s Selecting previously unselected package r-bioc-matrixgenerics. 196s Preparing to unpack .../271-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 196s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 196s Selecting previously unselected package r-cran-lattice. 196s Preparing to unpack .../272-r-cran-lattice_0.22-5-1_arm64.deb ... 196s Unpacking r-cran-lattice (0.22-5-1) ... 196s Selecting previously unselected package r-cran-matrix. 196s Preparing to unpack .../273-r-cran-matrix_1.6-5-1_arm64.deb ... 196s Unpacking r-cran-matrix (1.6-5-1) ... 196s Selecting previously unselected package r-cran-abind. 196s Preparing to unpack .../274-r-cran-abind_1.4-5-2_all.deb ... 196s Unpacking r-cran-abind (1.4-5-2) ... 196s Selecting previously unselected package r-bioc-s4arrays. 196s Preparing to unpack .../275-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 196s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 196s Selecting previously unselected package r-bioc-sparsearray. 196s Preparing to unpack .../276-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 196s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 196s Selecting previously unselected package r-bioc-delayedarray. 196s Preparing to unpack .../277-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 196s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 196s Selecting previously unselected package r-bioc-summarizedexperiment. 196s Preparing to unpack .../278-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 196s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 196s Selecting previously unselected package r-bioc-genomicalignments. 196s Preparing to unpack .../279-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 196s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 196s Selecting previously unselected package r-cran-rjson. 196s Preparing to unpack .../280-r-cran-rjson_0.2.21-1_arm64.deb ... 196s Unpacking r-cran-rjson (0.2.21-1) ... 196s Selecting previously unselected package r-cran-restfulr. 197s Preparing to unpack .../281-r-cran-restfulr_0.0.15-1_arm64.deb ... 197s Unpacking r-cran-restfulr (0.0.15-1) ... 197s Selecting previously unselected package r-bioc-rtracklayer. 197s Preparing to unpack .../282-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 197s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 197s Selecting previously unselected package r-bioc-bsgenome. 197s Preparing to unpack .../283-r-bioc-bsgenome_1.70.2-1_all.deb ... 197s Unpacking r-bioc-bsgenome (1.70.2-1) ... 197s Selecting previously unselected package r-bioc-genomicfeatures. 197s Preparing to unpack .../284-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 198s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 198s Selecting previously unselected package r-bioc-protgenerics. 198s Preparing to unpack .../285-r-bioc-protgenerics_1.34.0-1_all.deb ... 198s Unpacking r-bioc-protgenerics (1.34.0-1) ... 198s Selecting previously unselected package r-bioc-ensembldb. 198s Preparing to unpack .../286-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 198s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 198s Selecting previously unselected package r-bioc-experimenthub. 199s Preparing to unpack .../287-r-bioc-experimenthub_2.10.0+ds-1_all.deb ... 199s Unpacking r-bioc-experimenthub (2.10.0+ds-1) ... 199s Selecting previously unselected package r-bioc-variantannotation. 199s Preparing to unpack .../288-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 199s Unpacking r-bioc-variantannotation (1.48.1-1) ... 199s Selecting previously unselected package r-cran-runit. 199s Preparing to unpack .../289-r-cran-runit_0.4.32-3_all.deb ... 199s Unpacking r-cran-runit (0.4.32-3) ... 199s Selecting previously unselected package autopkgtest-satdep. 200s Preparing to unpack .../290-1-autopkgtest-satdep.deb ... 200s Unpacking autopkgtest-satdep (0) ... 200s Setting up libjs-json (0~20221030+~1.0.8-1) ... 200s Setting up javascript-common (11+nmu1) ... 200s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 200s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 200s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 200s Setting up libpaper1:arm64 (1.1.29) ... 201s 201s Creating config file /etc/papersize with new version 201s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 201s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 201s Setting up libxpm4:arm64 (1:3.5.17-1) ... 201s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 201s Setting up libxi6:arm64 (2:1.8.1-1) ... 201s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 201s Setting up libdatrie1:arm64 (0.2.13-3) ... 201s Setting up libjs-popper.js 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(2.70.2+dfsg-1) ... 208s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 208s Setting up r-cran-fontawesome (0.5.2-1) ... 208s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 208s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 208s Setting up r-cran-tidyr (1.3.1-1) ... 208s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 208s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 208s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 208s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 208s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 208s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 208s Setting up r-bioc-annotationdbi (1.64.1-1) ... 208s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 208s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 208s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 208s Setting up r-bioc-genomicalignments (1.38.2-1) ... 208s Setting up r-cran-bookdown (0.37+dfsg-1) ... 208s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 208s Setting up r-bioc-rtracklayer (1.62.0-1) ... 208s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 208s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 208s Setting up r-bioc-bsgenome (1.70.2-1) ... 208s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 208s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 208s Setting up r-cran-dt (0.31+dfsg-1) ... 208s Setting up r-bioc-variantannotation (1.48.1-1) ... 208s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 208s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 208s Setting up r-bioc-experimenthub (2.10.0+ds-1) ... 208s Setting up autopkgtest-satdep (0) ... 208s Processing triggers for man-db (2.12.0-3) ... 209s Processing triggers for install-info (7.1-3) ... 209s Processing triggers for libc-bin (2.39-0ubuntu2) ... 209s Processing triggers for tex-common (6.18) ... 210s Running updmap-sys. This may take some time... done. 210s Running mktexlsr /var/lib/texmf ... done. 210s Building format(s) --all. 248s This may take some time... done. 263s (Reading database ... 125094 files and directories currently installed.) 263s Removing autopkgtest-satdep (0) ... 264s autopkgtest [17:24:38]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 264s autopkgtest [17:24:38]: test pkg-r-autopkgtest: [----------------------- 264s Test: Try to load the R library AnnotationHub 265s 265s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 265s Copyright (C) 2024 The R Foundation for Statistical Computing 265s Platform: aarch64-unknown-linux-gnu (64-bit) 265s 265s R is free software and comes with ABSOLUTELY NO WARRANTY. 265s You are welcome to redistribute it under certain conditions. 265s Type 'license()' or 'licence()' for distribution details. 265s 265s R is a collaborative project with many contributors. 265s Type 'contributors()' for more information and 265s 'citation()' on how to cite R or R packages in publications. 265s 265s Type 'demo()' for some demos, 'help()' for on-line help, or 265s 'help.start()' for an HTML browser interface to help. 265s Type 'q()' to quit R. 265s 265s > library('AnnotationHub') 265s Loading required package: BiocGenerics 265s 265s Attaching package: ‘BiocGenerics’ 265s 265s The following objects are masked from ‘package:stats’: 265s 265s IQR, mad, sd, var, xtabs 265s 265s The following objects are masked from ‘package:base’: 265s 265s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 265s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 265s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 265s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 265s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 265s table, tapply, union, unique, unsplit, which.max, which.min 265s 265s Loading required package: BiocFileCache 265s Loading required package: dbplyr 270s > 270s > 270s Other tests are currently unsupported! 270s They will be progressively added. 271s autopkgtest [17:24:45]: test pkg-r-autopkgtest: -----------------------] 272s autopkgtest [17:24:46]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 272s pkg-r-autopkgtest PASS 272s autopkgtest [17:24:46]: @@@@@@@@@@@@@@@@@@@@ summary 272s pkg-r-autopkgtest PASS 290s Creating nova instance adt-noble-arm64-r-bioc-annotationhub-20240316-172014-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...