0s autopkgtest [17:18:45]: starting date and time: 2024-03-16 17:18:45+0000 0s autopkgtest [17:18:45]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:18:45]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.afrb4af8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-annotate --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-30.secgroup --name adt-noble-arm64-r-bioc-annotate-20240316-171845-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 105s autopkgtest [17:20:30]: testbed dpkg architecture: arm64 105s autopkgtest [17:20:30]: testbed apt version: 2.7.12 105s autopkgtest [17:20:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 107s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 107s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 108s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 108s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 108s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 108s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 108s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 108s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 108s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 108s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 108s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 108s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 108s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 114s Fetched 9063 kB in 3s (3022 kB/s) 115s Reading package lists... 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 121s Calculating upgrade... 122s The following packages will be REMOVED: 122s libglib2.0-0 libssl3 122s The following NEW packages will be installed: 122s libglib2.0-0t64 libssl3t64 xdg-user-dirs 122s The following packages have been kept back: 122s curl 122s The following packages will be upgraded: 122s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 122s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 122s Need to get 4592 kB of archives. 122s After this operation, 211 kB of additional disk space will be used. 122s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 122s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 122s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 123s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 123s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 123s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 123s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 123s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 124s Fetched 4592 kB in 1s (4897 kB/s) 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 124s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 124s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 124s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 124s udisks2 depends on libglib2.0-0 (>= 2.77.0). 124s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 124s python3-gi depends on libglib2.0-0 (>= 2.77.0). 124s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 124s netplan.io depends on libglib2.0-0 (>= 2.70.0). 124s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 124s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 124s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 124s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 124s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 124s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 124s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 124s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 124s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 124s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 124s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 124s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 124s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 124s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 124s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s fwupd depends on libglib2.0-0 (>= 2.79.0). 124s bolt depends on libglib2.0-0 (>= 2.56.0). 124s 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 124s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 124s Selecting previously unselected package libglib2.0-0t64:arm64. 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75825 files and directories currently installed.) 124s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 124s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 124s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 124s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 125s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 125s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 125s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 125s wget depends on libssl3 (>= 3.0.0). 125s u-boot-tools depends on libssl3 (>= 3.0.0). 125s tnftp depends on libssl3 (>= 3.0.0). 125s tcpdump depends on libssl3 (>= 3.0.0). 125s systemd-resolved depends on libssl3 (>= 3.0.0). 125s systemd depends on libssl3 (>= 3.0.0). 125s sudo depends on libssl3 (>= 3.0.0). 125s sbsigntool depends on libssl3 (>= 3.0.0). 125s rsync depends on libssl3 (>= 3.0.0). 125s python3-cryptography depends on libssl3 (>= 3.0.0). 125s openssh-server depends on libssl3 (>= 3.0.10). 125s openssh-client depends on libssl3 (>= 3.0.10). 125s mtd-utils depends on libssl3 (>= 3.0.0). 125s mokutil depends on libssl3 (>= 3.0.0). 125s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 125s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 125s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 125s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 125s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 125s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 125s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 125s libnvme1 depends on libssl3 (>= 3.0.0). 125s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 125s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 125s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 125s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 125s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 125s kmod depends on libssl3 (>= 3.0.0). 125s dhcpcd-base depends on libssl3 (>= 3.0.0). 125s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 125s 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 125s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 125s Selecting previously unselected package libssl3t64:arm64. 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 125s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 125s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 125s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 125s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 125s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 125s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 125s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 125s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 126s Selecting previously unselected package xdg-user-dirs. 126s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 126s Unpacking xdg-user-dirs (0.18-1) ... 126s Setting up xdg-user-dirs (0.18-1) ... 126s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 126s Setting up libtirpc-common (1.3.4+ds-1.1) ... 126s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 126s No schema files found: doing nothing. 126s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 126s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 126s Setting up openssl (3.0.13-0ubuntu1) ... 126s Setting up readline-common (8.2-3.1) ... 126s Processing triggers for man-db (2.12.0-3) ... 127s Processing triggers for install-info (7.1-3) ... 127s Processing triggers for libc-bin (2.39-0ubuntu2) ... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 130s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 130s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 131s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 131s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 131s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 135s Reading package lists... 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 137s Calculating upgrade... 138s The following packages have been kept back: 138s curl 138s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 140s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 144s autopkgtest [17:21:08]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 144s autopkgtest [17:21:09]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-annotate 147s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-annotate 1.80.0+dfsg-1 (dsc) [2217 B] 147s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-annotate 1.80.0+dfsg-1 (tar) [1410 kB] 147s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-annotate 1.80.0+dfsg-1 (diff) [4908 B] 147s gpgv: Signature made Thu Nov 30 13:33:47 2023 UTC 147s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 147s gpgv: issuer "tillea@rki.de" 147s gpgv: Can't check signature: No public key 147s dpkg-source: warning: cannot verify inline signature for ./r-bioc-annotate_1.80.0+dfsg-1.dsc: no acceptable signature found 148s autopkgtest [17:21:13]: testing package r-bioc-annotate version 1.80.0+dfsg-1 148s autopkgtest [17:21:13]: build not needed 149s autopkgtest [17:21:14]: test pkg-r-autopkgtest: preparing testbed 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s Starting pkgProblemResolver with broken count: 0 153s Starting 2 pkgProblemResolver with broken count: 0 153s Done 154s The following additional packages will be installed: 154s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 154s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 154s fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu 154s gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran 154s gfortran-13 gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu 154s icu-devtools libasan8 libatomic1 libblas-dev libblas3 libbz2-dev 154s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 154s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 154s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 154s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 154s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 154s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 154s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 154s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 154s libpng-dev libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 154s libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 154s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 154s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 154s linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 154s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 154s r-bioc-biocgenerics r-bioc-biostrings r-bioc-genefilter r-bioc-genomeinfodb 154s r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-iranges r-bioc-keggrest 154s r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-s4vectors r-bioc-xvector 154s r-bioc-zlibbioc r-cran-askpass r-cran-bit r-cran-bit64 r-cran-bitops 154s r-cran-blob r-cran-cachem r-cran-cli r-cran-cpp11 r-cran-crayon r-cran-curl 154s r-cran-dbi r-cran-fastmap r-cran-glue r-cran-httr r-cran-jsonlite 154s r-cran-lattice r-cran-lifecycle r-cran-matrix r-cran-matrixstats 154s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-plogr 154s r-cran-png r-cran-r6 r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-runit 154s r-cran-survival r-cran-sys r-cran-vctrs r-cran-xml r-cran-xtable 154s rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 154s Suggested packages: 154s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 154s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 154s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 154s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 154s libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib 154s r-base-html texlive-base texlive-latex-base texlive-plain-generic 154s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 154s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-graph 154s r-bioc-biocstyle r-cran-knitr r-bioc-all r-bioc-genomicranges 154s r-bioc-delayedarray r-bioc-rsamtools r-bioc-affy r-bioc-deseq2 154s r-bioc-bsgenome r-bioc-genomicfeatures r-cran-class r-cran-rcolorbrewer 154s r-cran-r.utils r-cran-data.table r-bioc-genomicalignments r-cran-markdown 154s r-bioc-sparsematrixstats r-bioc-sparsearray r-bioc-delayedmatrixstats 154s r-bioc-summarizedexperiment r-cran-testthat r-bioc-shortread r-cran-roxygen2 154s r-cran-rmarkdown r-cran-ff r-cran-covr r-cran-pillar r-cran-rstudioapi 154s r-cran-rmysql r-cran-digest r-cran-rcpp r-cran-spelling r-cran-plm 154s r-cran-zoo 154s Recommended packages: 154s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended 154s r-doc-html r-cran-testthat r-cran-callr r-cran-covr r-cran-digest 154s r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-mockery 154s r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot 154s r-cran-rstudioapi r-cran-tibble r-cran-whoami r-cran-withr r-cran-bench 154s r-cran-brio r-cran-decor r-cran-desc r-cran-ggplot2 r-cran-lobstr 154s r-cran-progress r-cran-scales r-cran-rcpp r-cran-spelling r-cran-later 154s r-cran-magrittr r-cran-httpuv r-cran-webutils r-cran-dplyr r-cran-waldo 154s r-cran-jpeg r-cran-readr r-cran-xml2 r-cran-r.rsp r-cran-sf r-cran-lintr 154s r-cran-tidyverse r-cran-base64enc r-cran-markdown r-cran-r.devices 154s r-cran-sodium r-cran-fs r-cran-pillar r-cran-usethis r-cran-dbitest 154s r-cran-gert r-cran-gh r-cran-hms r-cran-rvest r-cran-generics r-cran-pkgdown 154s r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 154s x11-utils x11-xserver-utils 154s The following packages will be REMOVED: 154s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 154s The following NEW packages will be installed: 154s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 154s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 154s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 154s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 154s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 154s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 154s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 154s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 154s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 154s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 154s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev 154s liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 154s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 154s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 154s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64 154s libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev 154s libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 154s libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 154s libxss1 libxt6t64 linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf 154s pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 154s r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings r-bioc-genefilter 154s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-iranges 154s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-s4vectors 154s r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bit r-cran-bit64 154s r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-cpp11 154s r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap r-cran-glue r-cran-httr 154s r-cran-jsonlite r-cran-lattice r-cran-lifecycle r-cran-matrix 154s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 154s r-cran-pkgconfig r-cran-plogr r-cran-png r-cran-r6 r-cran-rcurl r-cran-rlang 154s r-cran-rsqlite r-cran-runit r-cran-survival r-cran-sys r-cran-vctrs 154s r-cran-xml r-cran-xtable rpcsvc-proto unzip x11-common xdg-utils zip 154s zlib1g-dev 154s The following packages will be upgraded: 154s curl 154s 1 upgraded, 162 newly installed, 5 to remove and 0 not upgraded. 154s Need to get 285 MB/285 MB of archives. 154s After this operation, 991 MB of additional disk space will be used. 154s Get:1 /tmp/autopkgtest.NG2NO7/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [792 B] 155s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 155s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 155s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 155s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 155s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 155s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 156s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 156s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 156s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 156s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 156s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 156s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 156s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 157s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 157s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 157s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 158s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 158s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 158s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 158s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 158s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 158s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 158s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 158s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 159s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 159s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 159s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 159s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 159s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 159s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 160s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 160s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 160s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 160s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 160s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 160s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 160s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 160s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 160s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 160s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 160s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 160s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 160s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 160s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 160s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 160s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 160s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 160s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 161s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 161s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 161s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 161s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 161s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 161s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 161s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 161s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 161s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 161s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 161s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 161s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 161s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 161s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 161s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 161s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 161s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 161s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 161s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 161s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 161s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 161s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 161s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 161s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 161s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 161s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 161s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 161s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 161s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 161s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 161s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 161s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 161s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 161s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 161s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 161s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 161s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 161s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 161s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 161s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 161s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 161s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 161s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 161s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 161s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 161s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 161s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 161s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 161s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 161s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 161s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 161s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 161s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 162s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 162s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 162s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 162s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 162s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 162s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 162s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 165s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 165s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 165s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 165s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 165s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 165s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 165s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 165s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 165s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 165s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 165s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 165s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 165s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 165s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 165s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 166s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 166s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 166s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 166s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 166s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 166s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 166s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 166s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 166s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 166s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 166s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 166s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 166s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 166s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 166s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 166s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 166s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 166s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 166s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 166s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 166s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 166s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 166s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 166s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 166s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 167s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 167s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 167s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 167s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 167s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 167s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 167s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 167s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 167s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 167s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 168s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 168s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-go.db all 3.18.0-1 [18.7 MB] 169s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 171s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 172s Preconfiguring packages ... 172s Fetched 285 MB in 17s (17.2 MB/s) 172s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 172s wget depends on libpsl5 (>= 0.16.0). 172s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 172s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 172s 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75866 files and directories currently installed.) 172s Removing libpsl5:arm64 (0.21.2-1build1) ... 172s Selecting previously unselected package libpsl5t64:arm64. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75861 files and directories currently installed.) 173s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 173s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 173s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 173s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75867 files and directories currently installed.) 173s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 173s Selecting previously unselected package libcurl4t64:arm64. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75862 files and directories currently installed.) 173s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 173s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 173s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 173s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 173s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 173s 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75868 files and directories currently installed.) 173s Removing libpng16-16:arm64 (1.6.43-1) ... 173s Selecting previously unselected package libpng16-16t64:arm64. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75858 files and directories currently installed.) 173s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 173s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 173s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 173s parted depends on libreadline8 (>= 6.0). 173s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 173s libpython3.11-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 173s gpgsm depends on libreadline8 (>= 6.0). 173s gpgconf depends on libreadline8 (>= 6.0). 173s gpg depends on libreadline8 (>= 6.0). 173s gawk depends on libreadline8 (>= 6.0). 173s fdisk depends on libreadline8 (>= 6.0). 173s 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 174s Removing libreadline8:arm64 (8.2-3) ... 174s Selecting previously unselected package libreadline8t64:arm64. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75857 files and directories currently installed.) 174s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 174s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 174s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 174s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 174s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 174s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 174s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 174s lsof depends on libtirpc3 (>= 1.0.2). 174s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 174s libpython3.11-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 174s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 174s iproute2 depends on libtirpc3 (>= 1.0.2). 174s 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75877 files and directories currently installed.) 174s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 174s Selecting previously unselected package libtirpc3t64:arm64. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75871 files and directories currently installed.) 174s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 174s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 174s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 174s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 174s Selecting previously unselected package libc-dev-bin. 174s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 174s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 174s Selecting previously unselected package linux-libc-dev:arm64. 174s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 174s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 175s Selecting previously unselected package libcrypt-dev:arm64. 175s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 175s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 175s Selecting previously unselected package libtirpc-dev:arm64. 175s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 175s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 175s Selecting previously unselected package libnsl-dev:arm64. 175s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 175s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 175s Selecting previously unselected package rpcsvc-proto. 175s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 175s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 175s Selecting previously unselected package libc6-dev:arm64. 175s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 175s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 176s Selecting previously unselected package libisl23:arm64. 176s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 176s Unpacking libisl23:arm64 (0.26-3) ... 176s Selecting previously unselected package libmpc3:arm64. 176s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 176s Unpacking libmpc3:arm64 (1.3.1-1) ... 176s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 176s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 176s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 176s Selecting previously unselected package cpp-13. 176s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 176s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 176s Selecting previously unselected package cpp-aarch64-linux-gnu. 176s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 176s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 176s Selecting previously unselected package cpp. 176s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 176s Unpacking cpp (4:13.2.0-7ubuntu1) ... 176s Selecting previously unselected package libcc1-0:arm64. 176s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 176s Selecting previously unselected package libgomp1:arm64. 176s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libitm1:arm64. 177s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libatomic1:arm64. 177s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libasan8:arm64. 177s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package liblsan0:arm64. 177s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libtsan2:arm64. 177s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libubsan1:arm64. 177s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libhwasan0:arm64. 177s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 177s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 177s Selecting previously unselected package libgcc-13-dev:arm64. 177s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 177s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 178s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 178s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 178s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 179s Selecting previously unselected package gcc-13. 179s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 179s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 179s Selecting previously unselected package gcc-aarch64-linux-gnu. 179s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 179s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 179s Selecting previously unselected package gcc. 179s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 179s Unpacking gcc (4:13.2.0-7ubuntu1) ... 179s Selecting previously unselected package libstdc++-13-dev:arm64. 179s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 179s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 180s Selecting previously unselected package g++-13-aarch64-linux-gnu. 180s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 180s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 180s Selecting previously unselected package g++-13. 180s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 180s Unpacking g++-13 (13.2.0-17ubuntu2) ... 180s Selecting previously unselected package g++-aarch64-linux-gnu. 180s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 180s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 180s Selecting previously unselected package g++. 180s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 180s Unpacking g++ (4:13.2.0-7ubuntu1) ... 180s Selecting previously unselected package build-essential. 180s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 180s Unpacking build-essential (12.10ubuntu1) ... 181s Selecting previously unselected package dctrl-tools. 181s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 181s Unpacking dctrl-tools (2.24-3build2) ... 181s Selecting previously unselected package fonts-dejavu-mono. 181s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 181s Unpacking fonts-dejavu-mono (2.37-8) ... 181s Selecting previously unselected package fonts-dejavu-core. 181s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 181s Unpacking fonts-dejavu-core (2.37-8) ... 181s Selecting previously unselected package fontconfig-config. 181s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 181s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 181s Selecting previously unselected package libfontconfig1:arm64. 181s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 181s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 182s Selecting previously unselected package fontconfig. 182s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 182s Unpacking fontconfig (2.15.0-1ubuntu1) ... 182s Selecting previously unselected package libgfortran5:arm64. 182s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 182s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libgfortran-13-dev:arm64. 182s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 182s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 182s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 182s Preparing to unpack .../042-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 182s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 182s Selecting previously unselected package gfortran-13. 182s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 182s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 183s Selecting previously unselected package gfortran-aarch64-linux-gnu. 183s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 183s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 183s Selecting previously unselected package gfortran. 183s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 183s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 183s Selecting previously unselected package icu-devtools. 183s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_arm64.deb ... 183s Unpacking icu-devtools (74.2-1ubuntu1) ... 183s Selecting previously unselected package libblas3:arm64. 183s Preparing to unpack .../047-libblas3_3.12.0-3_arm64.deb ... 183s Unpacking libblas3:arm64 (3.12.0-3) ... 183s Selecting previously unselected package libblas-dev:arm64. 183s Preparing to unpack .../048-libblas-dev_3.12.0-3_arm64.deb ... 183s Unpacking libblas-dev:arm64 (3.12.0-3) ... 183s Selecting previously unselected package libbz2-dev:arm64. 183s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 183s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 183s Selecting previously unselected package libpixman-1-0:arm64. 183s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_arm64.deb ... 183s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 183s Selecting previously unselected package libxcb-render0:arm64. 183s Preparing to unpack .../051-libxcb-render0_1.15-1_arm64.deb ... 183s Unpacking libxcb-render0:arm64 (1.15-1) ... 183s Selecting previously unselected package libxcb-shm0:arm64. 183s Preparing to unpack .../052-libxcb-shm0_1.15-1_arm64.deb ... 183s Unpacking libxcb-shm0:arm64 (1.15-1) ... 183s Selecting previously unselected package libxrender1:arm64. 183s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 183s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 183s Selecting previously unselected package libcairo2:arm64. 183s Preparing to unpack .../054-libcairo2_1.18.0-1_arm64.deb ... 183s Unpacking libcairo2:arm64 (1.18.0-1) ... 183s Selecting previously unselected package libdatrie1:arm64. 183s Preparing to unpack .../055-libdatrie1_0.2.13-3_arm64.deb ... 183s Unpacking libdatrie1:arm64 (0.2.13-3) ... 183s Selecting previously unselected package libdeflate0:arm64. 183s Preparing to unpack .../056-libdeflate0_1.19-1_arm64.deb ... 183s Unpacking libdeflate0:arm64 (1.19-1) ... 184s Selecting previously unselected package libgraphite2-3:arm64. 184s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_arm64.deb ... 184s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 184s Selecting previously unselected package libharfbuzz0b:arm64. 184s Preparing to unpack .../058-libharfbuzz0b_8.3.0-2_arm64.deb ... 184s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 184s Selecting previously unselected package x11-common. 184s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu2_all.deb ... 184s Unpacking x11-common (1:7.7+23ubuntu2) ... 184s Selecting previously unselected package libice6:arm64. 184s Preparing to unpack .../060-libice6_2%3a1.0.10-1build2_arm64.deb ... 184s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 184s Selecting previously unselected package libicu-dev:arm64. 184s Preparing to unpack .../061-libicu-dev_74.2-1ubuntu1_arm64.deb ... 184s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 185s Selecting previously unselected package libjpeg-turbo8:arm64. 185s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 185s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 185s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 185s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 185s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 185s Selecting previously unselected package libjpeg8:arm64. 185s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_arm64.deb ... 185s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 185s Selecting previously unselected package libjpeg8-dev:arm64. 185s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 185s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 185s Selecting previously unselected package libjpeg-dev:arm64. 185s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 185s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 185s Selecting previously unselected package liblapack3:arm64. 185s Preparing to unpack .../067-liblapack3_3.12.0-3_arm64.deb ... 185s Unpacking liblapack3:arm64 (3.12.0-3) ... 185s Selecting previously unselected package liblapack-dev:arm64. 185s Preparing to unpack .../068-liblapack-dev_3.12.0-3_arm64.deb ... 185s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 186s Selecting previously unselected package liblerc4:arm64. 186s Preparing to unpack .../069-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 186s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 186s Selecting previously unselected package libncurses-dev:arm64. 186s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 186s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 186s Selecting previously unselected package libthai-data. 186s Preparing to unpack .../071-libthai-data_0.1.29-2_all.deb ... 186s Unpacking libthai-data (0.1.29-2) ... 186s Selecting previously unselected package libthai0:arm64. 186s Preparing to unpack .../072-libthai0_0.1.29-2_arm64.deb ... 186s Unpacking libthai0:arm64 (0.1.29-2) ... 186s Selecting previously unselected package libpango-1.0-0:arm64. 186s Preparing to unpack .../073-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 186s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 186s Selecting previously unselected package libpangoft2-1.0-0:arm64. 186s Preparing to unpack .../074-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 186s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 186s Selecting previously unselected package libpangocairo-1.0-0:arm64. 186s Preparing to unpack .../075-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 186s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 186s Selecting previously unselected package libpaper1:arm64. 186s Preparing to unpack .../076-libpaper1_1.1.29_arm64.deb ... 186s Unpacking libpaper1:arm64 (1.1.29) ... 186s Selecting previously unselected package libpaper-utils. 186s Preparing to unpack .../077-libpaper-utils_1.1.29_arm64.deb ... 186s Unpacking libpaper-utils (1.1.29) ... 186s Selecting previously unselected package libpcre2-16-0:arm64. 186s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 186s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 186s Selecting previously unselected package libpcre2-32-0:arm64. 186s Preparing to unpack .../079-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 186s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 187s Selecting previously unselected package libpcre2-posix3:arm64. 187s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 187s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 187s Selecting previously unselected package libpcre2-dev:arm64. 187s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 187s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 187s Selecting previously unselected package libpkgconf3:arm64. 187s Preparing to unpack .../082-libpkgconf3_1.8.1-2_arm64.deb ... 187s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 187s Selecting previously unselected package zlib1g-dev:arm64. 187s Preparing to unpack .../083-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 187s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 187s Selecting previously unselected package libpng-dev:arm64. 187s Preparing to unpack .../084-libpng-dev_1.6.43-3_arm64.deb ... 187s Unpacking libpng-dev:arm64 (1.6.43-3) ... 187s Selecting previously unselected package libreadline-dev:arm64. 187s Preparing to unpack .../085-libreadline-dev_8.2-3.1_arm64.deb ... 187s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 187s Selecting previously unselected package libsharpyuv0:arm64. 187s Preparing to unpack .../086-libsharpyuv0_1.3.2-0.4_arm64.deb ... 187s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 187s Selecting previously unselected package libsm6:arm64. 187s Preparing to unpack .../087-libsm6_2%3a1.2.3-1build2_arm64.deb ... 187s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 187s Selecting previously unselected package libtcl8.6:arm64. 187s Preparing to unpack .../088-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 187s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 187s Selecting previously unselected package libjbig0:arm64. 187s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 187s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 188s Selecting previously unselected package libwebp7:arm64. 188s Preparing to unpack .../090-libwebp7_1.3.2-0.4_arm64.deb ... 188s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 188s Selecting previously unselected package libtiff6:arm64. 188s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 188s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 188s Selecting previously unselected package libxft2:arm64. 188s Preparing to unpack .../092-libxft2_2.3.6-1_arm64.deb ... 188s Unpacking libxft2:arm64 (2.3.6-1) ... 188s Selecting previously unselected package libxss1:arm64. 188s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_arm64.deb ... 188s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 188s Selecting previously unselected package libtk8.6:arm64. 188s Preparing to unpack .../094-libtk8.6_8.6.13-2_arm64.deb ... 188s Unpacking libtk8.6:arm64 (8.6.13-2) ... 188s Selecting previously unselected package libxt6t64:arm64. 188s Preparing to unpack .../095-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 188s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 188s Selecting previously unselected package pkgconf-bin. 188s Preparing to unpack .../096-pkgconf-bin_1.8.1-2_arm64.deb ... 188s Unpacking pkgconf-bin (1.8.1-2) ... 188s Selecting previously unselected package pkgconf:arm64. 188s Preparing to unpack .../097-pkgconf_1.8.1-2_arm64.deb ... 188s Unpacking pkgconf:arm64 (1.8.1-2) ... 188s Selecting previously unselected package pkg-config:arm64. 188s Preparing to unpack .../098-pkg-config_1.8.1-2_arm64.deb ... 188s Unpacking pkg-config:arm64 (1.8.1-2) ... 188s Selecting previously unselected package zip. 188s Preparing to unpack .../099-zip_3.0-13_arm64.deb ... 188s Unpacking zip (3.0-13) ... 188s Selecting previously unselected package unzip. 188s Preparing to unpack .../100-unzip_6.0-28ubuntu3_arm64.deb ... 188s Unpacking unzip (6.0-28ubuntu3) ... 188s Selecting previously unselected package xdg-utils. 188s Preparing to unpack .../101-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 188s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 189s Selecting previously unselected package r-base-core. 189s Preparing to unpack .../102-r-base-core_4.3.3-2build1_arm64.deb ... 189s Unpacking r-base-core (4.3.3-2build1) ... 190s Selecting previously unselected package liblzma-dev:arm64. 190s Preparing to unpack .../103-liblzma-dev_5.4.5-0.3_arm64.deb ... 190s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 190s Selecting previously unselected package r-base-dev. 190s Preparing to unpack .../104-r-base-dev_4.3.3-2build1_all.deb ... 190s Unpacking r-base-dev (4.3.3-2build1) ... 190s Selecting previously unselected package pkg-r-autopkgtest. 190s Preparing to unpack .../105-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 190s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 190s Selecting previously unselected package r-bioc-biocgenerics. 190s Preparing to unpack .../106-r-bioc-biocgenerics_0.48.1-2_all.deb ... 190s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 190s Selecting previously unselected package r-bioc-biobase. 190s Preparing to unpack .../107-r-bioc-biobase_2.62.0-1_arm64.deb ... 190s Unpacking r-bioc-biobase (2.62.0-1) ... 190s Selecting previously unselected package r-bioc-s4vectors. 190s Preparing to unpack .../108-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 190s Selecting previously unselected package r-bioc-iranges. 190s Preparing to unpack .../109-r-bioc-iranges_2.36.0-1_arm64.deb ... 190s Unpacking r-bioc-iranges (2.36.0-1) ... 190s Selecting previously unselected package r-cran-dbi. 190s Preparing to unpack .../110-r-cran-dbi_1.2.2-1_all.deb ... 190s Unpacking r-cran-dbi (1.2.2-1) ... 190s Selecting previously unselected package r-cran-bit. 190s Preparing to unpack .../111-r-cran-bit_4.0.5-1_arm64.deb ... 190s Unpacking r-cran-bit (4.0.5-1) ... 191s Selecting previously unselected package r-cran-bit64. 191s Preparing to unpack .../112-r-cran-bit64_4.0.5-1_arm64.deb ... 191s Unpacking r-cran-bit64 (4.0.5-1) ... 191s Selecting previously unselected package r-cran-rlang. 191s Preparing to unpack .../113-r-cran-rlang_1.1.3-1_arm64.deb ... 191s Unpacking r-cran-rlang (1.1.3-1) ... 191s Selecting previously unselected package r-cran-cli. 191s Preparing to unpack .../114-r-cran-cli_3.6.2-1_arm64.deb ... 191s Unpacking r-cran-cli (3.6.2-1) ... 191s Selecting previously unselected package r-cran-glue. 191s Preparing to unpack .../115-r-cran-glue_1.7.0-1_arm64.deb ... 191s Unpacking r-cran-glue (1.7.0-1) ... 191s Selecting previously unselected package r-cran-lifecycle. 191s Preparing to unpack .../116-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 191s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 191s Selecting previously unselected package r-cran-vctrs. 191s Preparing to unpack .../117-r-cran-vctrs_0.6.5-1_arm64.deb ... 191s Unpacking r-cran-vctrs (0.6.5-1) ... 191s Selecting previously unselected package r-cran-blob. 191s Preparing to unpack .../118-r-cran-blob_1.2.4-1_all.deb ... 191s Unpacking r-cran-blob (1.2.4-1) ... 192s Selecting previously unselected package r-cran-fastmap. 192s Preparing to unpack .../119-r-cran-fastmap_1.1.1-1_arm64.deb ... 192s Unpacking r-cran-fastmap (1.1.1-1) ... 192s Selecting previously unselected package r-cran-cachem. 192s Preparing to unpack .../120-r-cran-cachem_1.0.8-1_arm64.deb ... 192s Unpacking r-cran-cachem (1.0.8-1) ... 192s Selecting previously unselected package r-cran-memoise. 192s Preparing to unpack .../121-r-cran-memoise_2.0.1-1_all.deb ... 192s Unpacking r-cran-memoise (2.0.1-1) ... 192s Selecting previously unselected package r-cran-pkgconfig. 192s Preparing to unpack .../122-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 192s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 192s Selecting previously unselected package r-cran-plogr. 192s Preparing to unpack .../123-r-cran-plogr_0.2.0-3build1_all.deb ... 192s Unpacking r-cran-plogr (0.2.0-3build1) ... 192s Selecting previously unselected package r-cran-cpp11. 192s Preparing to unpack .../124-r-cran-cpp11_0.4.7-1_all.deb ... 192s Unpacking r-cran-cpp11 (0.4.7-1) ... 192s Selecting previously unselected package r-cran-rsqlite. 192s Preparing to unpack .../125-r-cran-rsqlite_2.3.4-1_arm64.deb ... 192s Unpacking r-cran-rsqlite (2.3.4-1) ... 192s Selecting previously unselected package r-cran-curl. 192s Preparing to unpack .../126-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 192s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 192s Selecting previously unselected package r-cran-jsonlite. 192s Preparing to unpack .../127-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 192s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 192s Selecting previously unselected package r-cran-mime. 192s Preparing to unpack .../128-r-cran-mime_0.12-1_arm64.deb ... 192s Unpacking r-cran-mime (0.12-1) ... 192s Selecting previously unselected package r-cran-sys. 192s Preparing to unpack .../129-r-cran-sys_3.4.2-1_arm64.deb ... 192s Unpacking r-cran-sys (3.4.2-1) ... 193s Selecting previously unselected package r-cran-askpass. 193s Preparing to unpack .../130-r-cran-askpass_1.2.0-1_arm64.deb ... 193s Unpacking r-cran-askpass (1.2.0-1) ... 193s Selecting previously unselected package r-cran-openssl. 193s Preparing to unpack .../131-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 193s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 193s Selecting previously unselected package r-cran-r6. 193s Preparing to unpack .../132-r-cran-r6_2.5.1-1_all.deb ... 193s Unpacking r-cran-r6 (2.5.1-1) ... 193s Selecting previously unselected package r-cran-httr. 193s Preparing to unpack .../133-r-cran-httr_1.4.7+dfsg-1_all.deb ... 193s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 193s Selecting previously unselected package r-cran-png. 193s Preparing to unpack .../134-r-cran-png_0.1-8-1_arm64.deb ... 193s Unpacking r-cran-png (0.1-8-1) ... 193s Selecting previously unselected package r-bioc-zlibbioc. 193s Preparing to unpack .../135-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 193s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 193s Selecting previously unselected package r-bioc-xvector. 193s Preparing to unpack .../136-r-bioc-xvector_0.42.0-1_arm64.deb ... 193s Unpacking r-bioc-xvector (0.42.0-1) ... 193s Selecting previously unselected package r-cran-bitops. 193s Preparing to unpack .../137-r-cran-bitops_1.0-7-1_arm64.deb ... 193s Unpacking r-cran-bitops (1.0-7-1) ... 193s Selecting previously unselected package r-cran-rcurl. 193s Preparing to unpack .../138-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 193s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 193s Selecting previously unselected package r-bioc-genomeinfodbdata. 193s Preparing to unpack .../139-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 193s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 194s Selecting previously unselected package r-bioc-genomeinfodb. 194s Preparing to unpack .../140-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 194s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 194s Selecting previously unselected package r-cran-crayon. 194s Preparing to unpack .../141-r-cran-crayon_1.5.2-1_all.deb ... 194s Unpacking r-cran-crayon (1.5.2-1) ... 194s Selecting previously unselected package r-bioc-biostrings. 194s Preparing to unpack .../142-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 194s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 194s Selecting previously unselected package r-bioc-keggrest. 194s Preparing to unpack .../143-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 194s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 194s Selecting previously unselected package r-bioc-annotationdbi. 194s Preparing to unpack .../144-r-bioc-annotationdbi_1.64.1-1_all.deb ... 194s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 195s Selecting previously unselected package r-cran-xml. 195s Preparing to unpack .../145-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 195s Unpacking r-cran-xml (3.99-0.16.1-1) ... 195s Selecting previously unselected package r-cran-xtable. 195s Preparing to unpack .../146-r-cran-xtable_1%3a1.8-4-2_all.deb ... 195s Unpacking r-cran-xtable (1:1.8-4-2) ... 195s Selecting previously unselected package r-bioc-annotate. 195s Preparing to unpack .../147-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 195s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 195s Selecting previously unselected package r-cran-matrixstats. 195s Preparing to unpack .../148-r-cran-matrixstats_1.2.0-1_arm64.deb ... 195s Unpacking r-cran-matrixstats (1.2.0-1) ... 195s Selecting previously unselected package r-bioc-matrixgenerics. 195s Preparing to unpack .../149-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 195s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 196s Selecting previously unselected package r-cran-lattice. 196s Preparing to unpack .../150-r-cran-lattice_0.22-5-1_arm64.deb ... 196s Unpacking r-cran-lattice (0.22-5-1) ... 196s Selecting previously unselected package r-cran-matrix. 196s Preparing to unpack .../151-r-cran-matrix_1.6-5-1_arm64.deb ... 196s Unpacking r-cran-matrix (1.6-5-1) ... 196s Selecting previously unselected package r-cran-survival. 196s Preparing to unpack .../152-r-cran-survival_3.5-8-1_arm64.deb ... 196s Unpacking r-cran-survival (3.5-8-1) ... 196s Selecting previously unselected package r-bioc-genefilter. 196s Preparing to unpack .../153-r-bioc-genefilter_1.84.0-1_arm64.deb ... 196s Unpacking r-bioc-genefilter (1.84.0-1) ... 196s Selecting previously unselected package r-bioc-go.db. 196s Preparing to unpack .../154-r-bioc-go.db_3.18.0-1_all.deb ... 196s Unpacking r-bioc-go.db (3.18.0-1) ... 197s Selecting previously unselected package r-bioc-org.hs.eg.db. 197s Preparing to unpack .../155-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 197s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 202s Selecting previously unselected package r-cran-runit. 202s Preparing to unpack .../156-r-cran-runit_0.4.32-3_all.deb ... 202s Unpacking r-cran-runit (0.4.32-3) ... 202s Selecting previously unselected package autopkgtest-satdep. 202s Preparing to unpack .../157-1-autopkgtest-satdep.deb ... 202s Unpacking autopkgtest-satdep (0) ... 202s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 202s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 202s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 202s Setting up libpaper1:arm64 (1.1.29) ... 203s 203s Creating config file /etc/papersize with new version 203s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 203s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 203s Setting up libdatrie1:arm64 (0.2.13-3) ... 203s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 203s Setting up libxcb-render0:arm64 (1.15-1) ... 203s Setting up unzip (6.0-28ubuntu3) ... 203s Setting up x11-common (1:7.7+23ubuntu2) ... 204s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 204s Setting up libdeflate0:arm64 (1.19-1) ... 204s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 204s Setting up libxcb-shm0:arm64 (1.15-1) ... 204s Setting up libpaper-utils (1.1.29) ... 204s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 204s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 204s Setting up zip (3.0-13) ... 204s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 204s Setting up libblas3:arm64 (3.12.0-3) ... 204s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 204s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 204s Setting up libpkgconf3:arm64 (1.8.1-2) ... 204s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 204s Setting up fonts-dejavu-mono (2.37-8) ... 204s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 204s Setting up libmpc3:arm64 (1.3.1-1) ... 204s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 204s Setting up icu-devtools (74.2-1ubuntu1) ... 204s Setting up fonts-dejavu-core (2.37-8) ... 204s Setting up pkgconf-bin (1.8.1-2) ... 204s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 204s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libwebp7:arm64 (1.3.2-0.4) ... 204s Setting up libreadline8t64:arm64 (8.2-3.1) ... 204s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 204s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 204s Setting up libnsl-dev:arm64 (1.3.0-3) ... 204s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 204s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 204s Setting up libthai-data (0.1.29-2) ... 204s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 204s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libisl23:arm64 (0.26-3) ... 204s Setting up libc-dev-bin (2.39-0ubuntu2) ... 204s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 204s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 204s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 204s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libblas-dev:arm64 (3.12.0-3) ... 204s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 204s Setting up dctrl-tools (2.24-3build2) ... 204s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 204s Setting up libice6:arm64 (2:1.0.10-1build2) ... 204s Setting up liblapack3:arm64 (3.12.0-3) ... 204s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 204s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 204s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 204s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 205s Setting up pkgconf:arm64 (1.8.1-2) ... 205s Setting up libthai0:arm64 (0.1.29-2) ... 205s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 205s Setting up liblapack-dev:arm64 (3.12.0-3) ... 205s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 205s Setting up pkg-config:arm64 (1.8.1-2) ... 205s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 205s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 205s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 205s Setting up curl (8.5.0-2ubuntu7) ... 205s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 205s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 205s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 205s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 205s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 205s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 205s Setting up fontconfig (2.15.0-1ubuntu1) ... 207s Regenerating fonts cache... done. 207s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 207s Setting up libxft2:arm64 (2.3.6-1) ... 207s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 207s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 207s Setting up cpp-13 (13.2.0-17ubuntu2) ... 207s Setting up libtk8.6:arm64 (8.6.13-2) ... 207s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 207s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 207s Setting up libreadline-dev:arm64 (8.2-3.1) ... 207s Setting up libcairo2:arm64 (1.18.0-1) ... 207s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 207s Setting up gcc-13 (13.2.0-17ubuntu2) ... 207s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 207s Setting up cpp (4:13.2.0-7ubuntu1) ... 207s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 207s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 207s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 207s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 207s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 207s Setting up g++-13 (13.2.0-17ubuntu2) ... 207s Setting up libpng-dev:arm64 (1.6.43-3) ... 207s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 207s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 207s Setting up gcc (4:13.2.0-7ubuntu1) ... 207s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 207s Setting up r-base-core (4.3.3-2build1) ... 207s 207s Creating config file /etc/R/Renviron with new version 207s Setting up r-cran-crayon (1.5.2-1) ... 207s Setting up r-cran-lattice (0.22-5-1) ... 207s Setting up r-cran-xml (3.99-0.16.1-1) ... 207s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 207s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 207s Setting up r-cran-r6 (2.5.1-1) ... 207s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 207s Setting up r-cran-curl (5.2.0+dfsg-1) ... 207s Setting up r-bioc-biocgenerics (0.48.1-2) ... 207s Setting up r-cran-rlang (1.1.3-1) ... 207s Setting up r-cran-matrixstats (1.2.0-1) ... 207s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 207s Setting up r-cran-sys (3.4.2-1) ... 207s Setting up r-cran-plogr (0.2.0-3build1) ... 207s Setting up r-cran-mime (0.12-1) ... 207s Setting up r-cran-dbi (1.2.2-1) ... 207s Setting up r-cran-glue (1.7.0-1) ... 207s Setting up r-cran-bit (4.0.5-1) ... 207s Setting up r-cran-xtable (1:1.8-4-2) ... 207s Setting up r-cran-cli (3.6.2-1) ... 207s Setting up gfortran (4:13.2.0-7ubuntu1) ... 207s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 207s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 207s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 207s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 207s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 207s Setting up r-cran-bitops (1.0-7-1) ... 207s Setting up r-cran-bit64 (4.0.5-1) ... 207s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 207s Setting up r-cran-askpass (1.2.0-1) ... 207s Setting up r-cran-fastmap (1.1.1-1) ... 207s Setting up r-cran-png (0.1-8-1) ... 207s Setting up r-bioc-biobase (2.62.0-1) ... 207s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 207s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 207s Setting up r-cran-cpp11 (0.4.7-1) ... 207s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 207s Setting up r-cran-runit (0.4.32-3) ... 207s Setting up r-cran-matrix (1.6-5-1) ... 207s Setting up g++ (4:13.2.0-7ubuntu1) ... 208s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 208s Setting up r-cran-cachem (1.0.8-1) ... 208s Setting up build-essential (12.10ubuntu1) ... 208s Setting up r-bioc-iranges (2.36.0-1) ... 208s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 208s Setting up r-cran-vctrs (0.6.5-1) ... 208s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 208s Setting up r-base-dev (4.3.3-2build1) ... 208s Setting up r-cran-survival (3.5-8-1) ... 208s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 208s Setting up r-cran-httr (1.4.7+dfsg-1) ... 208s Setting up r-cran-memoise (2.0.1-1) ... 208s Setting up r-cran-blob (1.2.4-1) ... 208s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 208s Setting up r-bioc-xvector (0.42.0-1) ... 208s Setting up r-cran-rsqlite (2.3.4-1) ... 208s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 208s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 208s Setting up r-bioc-annotationdbi (1.64.1-1) ... 208s Setting up r-bioc-go.db (3.18.0-1) ... 208s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 208s Setting up r-bioc-genefilter (1.84.0-1) ... 208s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 208s Setting up autopkgtest-satdep (0) ... 208s Processing triggers for man-db (2.12.0-3) ... 209s Processing triggers for install-info (7.1-3) ... 210s Processing triggers for libc-bin (2.39-0ubuntu2) ... 226s (Reading database ... 85564 files and directories currently installed.) 226s Removing autopkgtest-satdep (0) ... 227s autopkgtest [17:22:32]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 227s autopkgtest [17:22:32]: test pkg-r-autopkgtest: [----------------------- 227s Test: Try to load the R library annotate 227s 227s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 227s Copyright (C) 2024 The R Foundation for Statistical Computing 227s Platform: aarch64-unknown-linux-gnu (64-bit) 227s 227s R is free software and comes with ABSOLUTELY NO WARRANTY. 227s You are welcome to redistribute it under certain conditions. 227s Type 'license()' or 'licence()' for distribution details. 227s 227s R is a collaborative project with many contributors. 227s Type 'contributors()' for more information and 227s 'citation()' on how to cite R or R packages in publications. 227s 227s Type 'demo()' for some demos, 'help()' for on-line help, or 227s 'help.start()' for an HTML browser interface to help. 227s Type 'q()' to quit R. 227s 227s > library('annotate') 227s Loading required package: AnnotationDbi 227s Loading required package: stats4 227s Loading required package: BiocGenerics 228s 228s Attaching package: ‘BiocGenerics’ 228s 228s The following objects are masked from ‘package:stats’: 228s 228s IQR, mad, sd, var, xtabs 228s 228s The following objects are masked from ‘package:base’: 228s 228s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 228s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 228s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 228s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 228s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 228s table, tapply, union, unique, unsplit, which.max, which.min 228s 228s Loading required package: Biobase 228s Welcome to Bioconductor 228s 228s Vignettes contain introductory material; view with 228s 'browseVignettes()'. To cite Bioconductor, see 228s 'citation("Biobase")', and for packages 'citation("pkgname")'. 228s 228s Loading required package: IRanges 228s Loading required package: S4Vectors 229s 229s Attaching package: ‘S4Vectors’ 229s 229s The following object is masked from ‘package:utils’: 229s 229s findMatches 229s 229s The following objects are masked from ‘package:base’: 229s 229s expand.grid, I, unname 229s 235s Loading required package: XML 236s > 236s > 236s Other tests are currently unsupported! 236s They will be progressively added. 237s autopkgtest [17:22:42]: test pkg-r-autopkgtest: -----------------------] 237s autopkgtest [17:22:42]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 237s pkg-r-autopkgtest PASS 238s autopkgtest [17:22:43]: @@@@@@@@@@@@@@@@@@@@ summary 238s pkg-r-autopkgtest PASS 256s Creating nova instance adt-noble-arm64-r-bioc-annotate-20240316-171845-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...