0s autopkgtest [17:18:42]: starting date and time: 2024-03-16 17:18:42+0000 0s autopkgtest [17:18:42]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:18:42]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0isqfkj3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-altcdfenvs --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-7.secgroup --name adt-noble-arm64-r-bioc-altcdfenvs-20240316-171842-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 113s autopkgtest [17:20:35]: testbed dpkg architecture: arm64 114s autopkgtest [17:20:36]: testbed apt version: 2.7.12 114s autopkgtest [17:20:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 114s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 114s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 115s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 115s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 115s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 115s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 115s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 115s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 115s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 115s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 115s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 115s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 115s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 117s Fetched 9063 kB in 2s (5300 kB/s) 117s Reading package lists... 120s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s Calculating upgrade... 122s The following packages will be REMOVED: 122s libglib2.0-0 libssl3 122s The following NEW packages will be installed: 122s libglib2.0-0t64 libssl3t64 xdg-user-dirs 122s The following packages have been kept back: 122s curl 122s The following packages will be upgraded: 122s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 122s ubuntu-minimal ubuntu-standard 122s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 122s Need to get 4613 kB of archives. 122s After this operation, 211 kB of additional disk space will be used. 122s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 122s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 122s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 122s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 122s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 122s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 122s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 122s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 122s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 122s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 123s Fetched 4613 kB in 1s (5535 kB/s) 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 123s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 123s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 124s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 124s udisks2 depends on libglib2.0-0 (>= 2.77.0). 124s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 124s python3-gi depends on libglib2.0-0 (>= 2.77.0). 124s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 124s netplan.io depends on libglib2.0-0 (>= 2.70.0). 124s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 124s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 124s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 124s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 124s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 124s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 124s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 124s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 124s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 124s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 124s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 124s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 124s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 124s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 124s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s fwupd depends on libglib2.0-0 (>= 2.79.0). 124s bolt depends on libglib2.0-0 (>= 2.56.0). 124s 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 124s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 124s Selecting previously unselected package libglib2.0-0t64:arm64. 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 124s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 124s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 124s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 124s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 124s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 124s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 124s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 124s wget depends on libssl3 (>= 3.0.0). 124s u-boot-tools depends on libssl3 (>= 3.0.0). 124s tnftp depends on libssl3 (>= 3.0.0). 124s tcpdump depends on libssl3 (>= 3.0.0). 124s systemd-resolved depends on libssl3 (>= 3.0.0). 124s systemd depends on libssl3 (>= 3.0.0). 124s sudo depends on libssl3 (>= 3.0.0). 124s sbsigntool depends on libssl3 (>= 3.0.0). 124s rsync depends on libssl3 (>= 3.0.0). 124s python3-cryptography depends on libssl3 (>= 3.0.0). 124s openssh-server depends on libssl3 (>= 3.0.10). 124s openssh-client depends on libssl3 (>= 3.0.10). 124s mtd-utils depends on libssl3 (>= 3.0.0). 124s mokutil depends on libssl3 (>= 3.0.0). 124s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 124s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 124s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 124s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 124s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 124s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 124s libnvme1 depends on libssl3 (>= 3.0.0). 124s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 124s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 124s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 124s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 124s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 124s kmod depends on libssl3 (>= 3.0.0). 124s dhcpcd-base depends on libssl3 (>= 3.0.0). 124s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 124s 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 124s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 124s Selecting previously unselected package libssl3t64:arm64. 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 124s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 124s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 124s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 124s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 124s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 124s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 124s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 124s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 124s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 124s Unpacking ubuntu-minimal (1.536) over (1.535) ... 124s Selecting previously unselected package xdg-user-dirs. 124s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 124s Unpacking xdg-user-dirs (0.18-1) ... 124s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 124s Unpacking ubuntu-standard (1.536) over (1.535) ... 124s Setting up ubuntu-minimal (1.536) ... 124s Setting up xdg-user-dirs (0.18-1) ... 124s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 124s Setting up libtirpc-common (1.3.4+ds-1.1) ... 124s Setting up ubuntu-standard (1.536) ... 124s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 125s No schema files found: doing nothing. 125s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 125s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 125s Setting up openssl (3.0.13-0ubuntu1) ... 125s Setting up readline-common (8.2-3.1) ... 125s Processing triggers for man-db (2.12.0-3) ... 126s Processing triggers for install-info (7.1-3) ... 126s Processing triggers for libc-bin (2.39-0ubuntu2) ... 126s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 128s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 128s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 129s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 129s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 131s Reading package lists... 131s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Calculating upgrade... 132s The following packages have been kept back: 132s curl 132s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 132s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 139s autopkgtest [17:21:01]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 144s autopkgtest [17:21:06]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-altcdfenvs 146s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-altcdfenvs 1:2.64.0-1 (dsc) [2223 B] 146s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-altcdfenvs 1:2.64.0-1 (tar) [328 kB] 146s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-altcdfenvs 1:2.64.0-1 (diff) [4784 B] 146s gpgv: Signature made Thu Nov 30 10:28:03 2023 UTC 146s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 146s gpgv: issuer "tille@debian.org" 146s gpgv: Can't check signature: No public key 146s dpkg-source: warning: cannot verify inline signature for ./r-bioc-altcdfenvs_2.64.0-1.dsc: no acceptable signature found 146s autopkgtest [17:21:08]: testing package r-bioc-altcdfenvs version 1:2.64.0-1 146s autopkgtest [17:21:08]: build not needed 147s autopkgtest [17:21:09]: test pkg-r-autopkgtest: preparing testbed 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 149s Starting pkgProblemResolver with broken count: 0 149s Starting 2 pkgProblemResolver with broken count: 0 149s Done 150s The following additional packages will be installed: 150s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 150s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 150s fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu 150s gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran 150s gfortran-13 gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu 150s icu-devtools libasan8 libatomic1 libblas-dev libblas3 libbz2-dev 150s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 150s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 150s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 150s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 150s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 150s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 150s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 150s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 150s libpng-dev libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 150s libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 150s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 150s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 150s linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 150s r-base-dev r-bioc-affy r-bioc-affyio r-bioc-altcdfenvs r-bioc-biobase 150s r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb 150s r-bioc-genomeinfodbdata r-bioc-graph r-bioc-hypergraph r-bioc-iranges 150s r-bioc-makecdfenv r-bioc-preprocesscore r-bioc-s4vectors r-bioc-xvector 150s r-bioc-zlibbioc r-cran-biocmanager r-cran-bitops r-cran-crayon 150s r-cran-rcolorbrewer r-cran-rcurl rpcsvc-proto unzip x11-common xdg-utils zip 150s zlib1g-dev 150s Suggested packages: 150s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 150s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 150s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 150s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 150s libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib 150s r-base-html texlive-base texlive-latex-base texlive-plain-generic 150s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 150s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all 150s r-cran-runit r-bioc-biocstyle r-cran-knitr r-bioc-genomicranges 150s r-bioc-delayedarray r-bioc-rsamtools r-bioc-annotationdbi r-bioc-deseq2 150s r-bioc-annotate r-bioc-bsgenome r-bioc-genomicfeatures r-cran-r.utils 150s r-cran-data.table r-bioc-genomicalignments r-cran-sparsem r-cran-xml 150s r-bioc-rbgl r-cran-cluster r-bioc-summarizedexperiment r-cran-matrix 150s r-bioc-shortread r-cran-rstudioapi 150s Recommended packages: 150s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended 150s r-doc-html r-bioc-biocversion r-cran-remotes r-cran-rmarkdown 150s r-cran-testthat r-cran-withr r-cran-curl r-cran-knitr r-cran-mockery 150s r-cran-xml libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 150s x11-utils x11-xserver-utils 150s The following packages will be REMOVED: 150s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 150s The following NEW packages will be installed: 150s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 150s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 150s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 150s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 150s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 150s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 150s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 150s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 150s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 150s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 150s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev 150s liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 150s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 150s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 150s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64 150s libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev 150s libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 150s libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 150s libxss1 libxt6t64 linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf 150s pkgconf-bin r-base-core r-base-dev r-bioc-affy r-bioc-affyio 150s r-bioc-altcdfenvs r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings 150s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-graph r-bioc-hypergraph 150s r-bioc-iranges r-bioc-makecdfenv r-bioc-preprocesscore r-bioc-s4vectors 150s r-bioc-xvector r-bioc-zlibbioc r-cran-biocmanager r-cran-bitops 150s r-cran-crayon r-cran-rcolorbrewer r-cran-rcurl rpcsvc-proto unzip x11-common 150s xdg-utils zip zlib1g-dev 150s The following packages will be upgraded: 150s curl 150s 1 upgraded, 132 newly installed, 5 to remove and 0 not upgraded. 150s Need to get 176 MB/176 MB of archives. 150s After this operation, 479 MB of additional disk space will be used. 150s Get:1 /tmp/autopkgtest.y7zfpn/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [740 B] 150s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 150s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 151s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 151s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 151s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 151s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 151s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 151s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 151s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 151s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 151s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 151s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 151s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 151s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 151s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 151s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 151s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 151s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 151s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 151s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 151s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 151s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 151s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 151s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 151s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 151s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 151s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 151s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 151s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 151s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 152s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 152s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 152s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 152s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 152s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 152s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 152s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 152s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 152s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 152s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 152s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 152s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 152s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 152s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 152s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 152s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 152s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 152s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 153s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 153s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 153s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 153s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 153s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 153s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 153s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 153s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 153s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 153s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 153s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 153s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 153s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 153s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 153s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 153s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 153s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 153s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 153s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 153s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 153s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 153s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 153s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 153s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 153s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 153s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 153s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 153s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 153s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 153s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 153s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 153s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 153s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 153s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 153s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 153s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 153s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 153s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 153s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 153s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 153s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 153s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 153s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 153s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 153s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 153s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 153s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 153s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 153s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 153s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 153s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 153s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 153s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 153s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 154s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 154s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 154s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 154s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 154s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 154s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 155s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 155s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 155s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 155s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 155s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 155s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 155s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affyio arm64 1.72.0-1 [87.1 kB] 155s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 155s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-preprocesscore arm64 1.64.0+ds-1 [147 kB] 155s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affy arm64 1.80.0-1 [1350 kB] 155s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 155s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-makecdfenv arm64 1.78.0-1 [3406 kB] 155s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 155s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 155s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 155s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 155s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 156s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 156s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 156s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 156s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 156s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-hypergraph all 1.74.0-1 [172 kB] 156s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-altcdfenvs all 1:2.64.0-1 [600 kB] 156s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 157s Preconfiguring packages ... 157s Fetched 176 MB in 6s (27.6 MB/s) 157s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 157s wget depends on libpsl5 (>= 0.16.0). 157s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 157s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 157s 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 157s Removing libpsl5:arm64 (0.21.2-1build1) ... 157s Selecting previously unselected package libpsl5t64:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 157s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 157s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 158s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 158s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 158s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 158s Selecting previously unselected package libcurl4t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 158s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 158s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 158s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 158s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 158s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 158s 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 158s Removing libpng16-16:arm64 (1.6.43-1) ... 158s Selecting previously unselected package libpng16-16t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 158s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 158s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 158s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 158s parted depends on libreadline8 (>= 6.0). 158s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 158s gpgsm depends on libreadline8 (>= 6.0). 158s gpgconf depends on libreadline8 (>= 6.0). 158s gpg depends on libreadline8 (>= 6.0). 158s gawk depends on libreadline8 (>= 6.0). 158s fdisk depends on libreadline8 (>= 6.0). 158s 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 158s Removing libreadline8:arm64 (8.2-3) ... 158s Selecting previously unselected package libreadline8t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 158s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 158s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 158s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 158s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 158s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 158s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 158s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 158s lsof depends on libtirpc3 (>= 1.0.2). 158s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 158s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 158s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 158s iproute2 depends on libtirpc3 (>= 1.0.2). 158s 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 158s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 158s Selecting previously unselected package libtirpc3t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 158s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 158s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 158s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 159s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 159s Selecting previously unselected package libc-dev-bin. 159s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 159s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 159s Selecting previously unselected package linux-libc-dev:arm64. 159s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 159s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 159s Selecting previously unselected package libcrypt-dev:arm64. 159s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 159s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 159s Selecting previously unselected package libtirpc-dev:arm64. 159s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 159s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 159s Selecting previously unselected package libnsl-dev:arm64. 159s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 159s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 160s Selecting previously unselected package rpcsvc-proto. 160s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 160s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 160s Selecting previously unselected package libc6-dev:arm64. 160s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 160s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 160s Selecting previously unselected package libisl23:arm64. 160s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 160s Unpacking libisl23:arm64 (0.26-3) ... 160s Selecting previously unselected package libmpc3:arm64. 160s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 160s Unpacking libmpc3:arm64 (1.3.1-1) ... 160s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 160s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 160s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package cpp-13. 161s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 161s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package cpp-aarch64-linux-gnu. 161s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 161s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 161s Selecting previously unselected package cpp. 161s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 161s Unpacking cpp (4:13.2.0-7ubuntu1) ... 161s Selecting previously unselected package libcc1-0:arm64. 161s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 161s Selecting previously unselected package libgomp1:arm64. 161s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 161s Selecting previously unselected package libitm1:arm64. 161s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 161s Selecting previously unselected package libatomic1:arm64. 161s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libasan8:arm64. 162s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package liblsan0:arm64. 162s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libtsan2:arm64. 162s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libubsan1:arm64. 162s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libhwasan0:arm64. 162s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libgcc-13-dev:arm64. 162s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 162s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 162s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 162s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 162s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package gcc-13. 163s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package gcc-aarch64-linux-gnu. 163s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 163s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 163s Selecting previously unselected package gcc. 163s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 163s Unpacking gcc (4:13.2.0-7ubuntu1) ... 163s Selecting previously unselected package libstdc++-13-dev:arm64. 163s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package g++-13-aarch64-linux-gnu. 163s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package g++-13. 163s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking g++-13 (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package g++-aarch64-linux-gnu. 163s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 163s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 163s Selecting previously unselected package g++. 163s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 163s Unpacking g++ (4:13.2.0-7ubuntu1) ... 163s Selecting previously unselected package build-essential. 163s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 163s Unpacking build-essential (12.10ubuntu1) ... 163s Selecting previously unselected package dctrl-tools. 163s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 163s Unpacking dctrl-tools (2.24-3build2) ... 164s Selecting previously unselected package fonts-dejavu-mono. 164s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 164s Unpacking fonts-dejavu-mono (2.37-8) ... 164s Selecting previously unselected package fonts-dejavu-core. 164s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 164s Unpacking fonts-dejavu-core (2.37-8) ... 164s Selecting previously unselected package fontconfig-config. 164s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 164s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 164s Selecting previously unselected package libfontconfig1:arm64. 164s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 164s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 164s Selecting previously unselected package fontconfig. 164s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 164s Unpacking fontconfig (2.15.0-1ubuntu1) ... 164s Selecting previously unselected package libgfortran5:arm64. 164s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 164s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 164s Selecting previously unselected package libgfortran-13-dev:arm64. 164s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 164s Preparing to unpack .../042-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package gfortran-13. 164s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package gfortran-aarch64-linux-gnu. 164s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 164s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 164s Selecting previously unselected package gfortran. 164s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 164s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 164s Selecting previously unselected package icu-devtools. 164s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_arm64.deb ... 164s Unpacking icu-devtools (74.2-1ubuntu1) ... 164s Selecting previously unselected package libblas3:arm64. 165s Preparing to unpack .../047-libblas3_3.12.0-3_arm64.deb ... 165s Unpacking libblas3:arm64 (3.12.0-3) ... 165s Selecting previously unselected package libblas-dev:arm64. 165s Preparing to unpack .../048-libblas-dev_3.12.0-3_arm64.deb ... 165s Unpacking libblas-dev:arm64 (3.12.0-3) ... 165s Selecting previously unselected package libbz2-dev:arm64. 165s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 165s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 165s Selecting previously unselected package libpixman-1-0:arm64. 165s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_arm64.deb ... 165s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 165s Selecting previously unselected package libxcb-render0:arm64. 165s Preparing to unpack .../051-libxcb-render0_1.15-1_arm64.deb ... 165s Unpacking libxcb-render0:arm64 (1.15-1) ... 165s Selecting previously unselected package libxcb-shm0:arm64. 165s Preparing to unpack .../052-libxcb-shm0_1.15-1_arm64.deb ... 165s Unpacking libxcb-shm0:arm64 (1.15-1) ... 165s Selecting previously unselected package libxrender1:arm64. 165s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 165s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 165s Selecting previously unselected package libcairo2:arm64. 165s Preparing to unpack .../054-libcairo2_1.18.0-1_arm64.deb ... 165s Unpacking libcairo2:arm64 (1.18.0-1) ... 165s Selecting previously unselected package libdatrie1:arm64. 165s Preparing to unpack .../055-libdatrie1_0.2.13-3_arm64.deb ... 165s Unpacking libdatrie1:arm64 (0.2.13-3) ... 165s Selecting previously unselected package libdeflate0:arm64. 165s Preparing to unpack .../056-libdeflate0_1.19-1_arm64.deb ... 165s Unpacking libdeflate0:arm64 (1.19-1) ... 165s Selecting previously unselected package libgraphite2-3:arm64. 165s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_arm64.deb ... 165s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 165s Selecting previously unselected package libharfbuzz0b:arm64. 165s Preparing to unpack .../058-libharfbuzz0b_8.3.0-2_arm64.deb ... 165s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 165s Selecting previously unselected package x11-common. 165s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu2_all.deb ... 165s Unpacking x11-common (1:7.7+23ubuntu2) ... 166s Selecting previously unselected package libice6:arm64. 166s Preparing to unpack .../060-libice6_2%3a1.0.10-1build2_arm64.deb ... 166s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 166s Selecting previously unselected package libicu-dev:arm64. 166s Preparing to unpack .../061-libicu-dev_74.2-1ubuntu1_arm64.deb ... 166s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 166s Selecting previously unselected package libjpeg-turbo8:arm64. 166s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 166s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 166s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 166s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 166s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 166s Selecting previously unselected package libjpeg8:arm64. 166s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_arm64.deb ... 166s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 167s Selecting previously unselected package libjpeg8-dev:arm64. 167s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 167s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 167s Selecting previously unselected package libjpeg-dev:arm64. 167s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 167s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 167s Selecting previously unselected package liblapack3:arm64. 167s Preparing to unpack .../067-liblapack3_3.12.0-3_arm64.deb ... 167s Unpacking liblapack3:arm64 (3.12.0-3) ... 167s Selecting previously unselected package liblapack-dev:arm64. 167s Preparing to unpack .../068-liblapack-dev_3.12.0-3_arm64.deb ... 167s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 167s Selecting previously unselected package liblerc4:arm64. 167s Preparing to unpack .../069-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 167s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 167s Selecting previously unselected package libncurses-dev:arm64. 167s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 167s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 167s Selecting previously unselected package libthai-data. 167s Preparing to unpack .../071-libthai-data_0.1.29-2_all.deb ... 167s Unpacking libthai-data (0.1.29-2) ... 167s Selecting previously unselected package libthai0:arm64. 167s Preparing to unpack .../072-libthai0_0.1.29-2_arm64.deb ... 167s Unpacking libthai0:arm64 (0.1.29-2) ... 167s Selecting previously unselected package libpango-1.0-0:arm64. 167s Preparing to unpack .../073-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 167s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 167s Selecting previously unselected package libpangoft2-1.0-0:arm64. 167s Preparing to unpack .../074-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 167s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 167s Selecting previously unselected package libpangocairo-1.0-0:arm64. 167s Preparing to unpack .../075-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 167s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 167s Selecting previously unselected package libpaper1:arm64. 168s Preparing to unpack .../076-libpaper1_1.1.29_arm64.deb ... 168s Unpacking libpaper1:arm64 (1.1.29) ... 168s Selecting previously unselected package libpaper-utils. 168s Preparing to unpack .../077-libpaper-utils_1.1.29_arm64.deb ... 168s Unpacking libpaper-utils (1.1.29) ... 168s Selecting previously unselected package libpcre2-16-0:arm64. 168s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 168s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 168s Selecting previously unselected package libpcre2-32-0:arm64. 168s Preparing to unpack .../079-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 168s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 168s Selecting previously unselected package libpcre2-posix3:arm64. 168s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 168s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 168s Selecting previously unselected package libpcre2-dev:arm64. 168s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 168s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 168s Selecting previously unselected package libpkgconf3:arm64. 168s Preparing to unpack .../082-libpkgconf3_1.8.1-2_arm64.deb ... 168s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 168s Selecting previously unselected package zlib1g-dev:arm64. 168s Preparing to unpack .../083-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 168s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 168s Selecting previously unselected package libpng-dev:arm64. 168s Preparing to unpack .../084-libpng-dev_1.6.43-3_arm64.deb ... 168s Unpacking libpng-dev:arm64 (1.6.43-3) ... 168s Selecting previously unselected package libreadline-dev:arm64. 168s Preparing to unpack .../085-libreadline-dev_8.2-3.1_arm64.deb ... 168s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 168s Selecting previously unselected package libsharpyuv0:arm64. 168s Preparing to unpack .../086-libsharpyuv0_1.3.2-0.4_arm64.deb ... 168s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 168s Selecting previously unselected package libsm6:arm64. 168s Preparing to unpack .../087-libsm6_2%3a1.2.3-1build2_arm64.deb ... 168s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 168s Selecting previously unselected package libtcl8.6:arm64. 168s Preparing to unpack .../088-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 168s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 168s Selecting previously unselected package libjbig0:arm64. 168s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 168s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 168s Selecting previously unselected package libwebp7:arm64. 168s Preparing to unpack .../090-libwebp7_1.3.2-0.4_arm64.deb ... 168s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 168s Selecting previously unselected package libtiff6:arm64. 168s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 168s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 168s Selecting previously unselected package libxft2:arm64. 168s Preparing to unpack .../092-libxft2_2.3.6-1_arm64.deb ... 168s Unpacking libxft2:arm64 (2.3.6-1) ... 168s Selecting previously unselected package libxss1:arm64. 169s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_arm64.deb ... 169s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 169s Selecting previously unselected package libtk8.6:arm64. 169s Preparing to unpack .../094-libtk8.6_8.6.13-2_arm64.deb ... 169s Unpacking libtk8.6:arm64 (8.6.13-2) ... 169s Selecting previously unselected package libxt6t64:arm64. 169s Preparing to unpack .../095-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 169s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 169s Selecting previously unselected package pkgconf-bin. 169s Preparing to unpack .../096-pkgconf-bin_1.8.1-2_arm64.deb ... 169s Unpacking pkgconf-bin (1.8.1-2) ... 169s Selecting previously unselected package pkgconf:arm64. 169s Preparing to unpack .../097-pkgconf_1.8.1-2_arm64.deb ... 169s Unpacking pkgconf:arm64 (1.8.1-2) ... 169s Selecting previously unselected package pkg-config:arm64. 169s Preparing to unpack .../098-pkg-config_1.8.1-2_arm64.deb ... 169s Unpacking pkg-config:arm64 (1.8.1-2) ... 169s Selecting previously unselected package zip. 169s Preparing to unpack .../099-zip_3.0-13_arm64.deb ... 169s Unpacking zip (3.0-13) ... 169s Selecting previously unselected package unzip. 169s Preparing to unpack .../100-unzip_6.0-28ubuntu3_arm64.deb ... 169s Unpacking unzip (6.0-28ubuntu3) ... 169s Selecting previously unselected package xdg-utils. 169s Preparing to unpack .../101-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 169s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 169s Selecting previously unselected package r-base-core. 169s Preparing to unpack .../102-r-base-core_4.3.3-2build1_arm64.deb ... 169s Unpacking r-base-core (4.3.3-2build1) ... 169s Selecting previously unselected package liblzma-dev:arm64. 169s Preparing to unpack .../103-liblzma-dev_5.4.5-0.3_arm64.deb ... 169s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 169s Selecting previously unselected package r-base-dev. 169s Preparing to unpack .../104-r-base-dev_4.3.3-2build1_all.deb ... 169s Unpacking r-base-dev (4.3.3-2build1) ... 169s Selecting previously unselected package pkg-r-autopkgtest. 170s Preparing to unpack .../105-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 170s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 170s Selecting previously unselected package r-bioc-biocgenerics. 170s Preparing to unpack .../106-r-bioc-biocgenerics_0.48.1-2_all.deb ... 170s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 170s Selecting previously unselected package r-bioc-biobase. 170s Preparing to unpack .../107-r-bioc-biobase_2.62.0-1_arm64.deb ... 170s Unpacking r-bioc-biobase (2.62.0-1) ... 170s Selecting previously unselected package r-bioc-zlibbioc. 170s Preparing to unpack .../108-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 170s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 170s Selecting previously unselected package r-bioc-affyio. 170s Preparing to unpack .../109-r-bioc-affyio_1.72.0-1_arm64.deb ... 170s Unpacking r-bioc-affyio (1.72.0-1) ... 170s Selecting previously unselected package r-cran-biocmanager. 170s Preparing to unpack .../110-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 170s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 170s Selecting previously unselected package r-bioc-preprocesscore. 170s Preparing to unpack .../111-r-bioc-preprocesscore_1.64.0+ds-1_arm64.deb ... 170s Unpacking r-bioc-preprocesscore (1.64.0+ds-1) ... 170s Selecting previously unselected package r-bioc-affy. 170s Preparing to unpack .../112-r-bioc-affy_1.80.0-1_arm64.deb ... 170s Unpacking r-bioc-affy (1.80.0-1) ... 170s Selecting previously unselected package r-bioc-s4vectors. 170s Preparing to unpack .../113-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 170s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 170s Selecting previously unselected package r-bioc-makecdfenv. 170s Preparing to unpack .../114-r-bioc-makecdfenv_1.78.0-1_arm64.deb ... 170s Unpacking r-bioc-makecdfenv (1.78.0-1) ... 170s Selecting previously unselected package r-bioc-iranges. 170s Preparing to unpack .../115-r-bioc-iranges_2.36.0-1_arm64.deb ... 170s Unpacking r-bioc-iranges (2.36.0-1) ... 170s Selecting previously unselected package r-bioc-xvector. 170s Preparing to unpack .../116-r-bioc-xvector_0.42.0-1_arm64.deb ... 170s Unpacking r-bioc-xvector (0.42.0-1) ... 170s Selecting previously unselected package r-cran-bitops. 170s Preparing to unpack .../117-r-cran-bitops_1.0-7-1_arm64.deb ... 170s Unpacking r-cran-bitops (1.0-7-1) ... 170s Selecting previously unselected package r-cran-rcurl. 170s Preparing to unpack .../118-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 170s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 170s Selecting previously unselected package r-bioc-genomeinfodbdata. 170s Preparing to unpack .../119-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 170s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 170s Selecting previously unselected package r-bioc-genomeinfodb. 171s Preparing to unpack .../120-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 171s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 171s Selecting previously unselected package r-cran-crayon. 171s Preparing to unpack .../121-r-cran-crayon_1.5.2-1_all.deb ... 171s Unpacking r-cran-crayon (1.5.2-1) ... 171s Selecting previously unselected package r-bioc-biostrings. 171s Preparing to unpack .../122-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 171s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 171s Selecting previously unselected package r-bioc-graph. 171s Preparing to unpack .../123-r-bioc-graph_1.80.0-1_arm64.deb ... 171s Unpacking r-bioc-graph (1.80.0-1) ... 171s Selecting previously unselected package r-bioc-hypergraph. 171s Preparing to unpack .../124-r-bioc-hypergraph_1.74.0-1_all.deb ... 171s Unpacking r-bioc-hypergraph (1.74.0-1) ... 171s Selecting previously unselected package r-bioc-altcdfenvs. 172s Preparing to unpack .../125-r-bioc-altcdfenvs_1%3a2.64.0-1_all.deb ... 172s Unpacking r-bioc-altcdfenvs (1:2.64.0-1) ... 172s Selecting previously unselected package r-cran-rcolorbrewer. 172s Preparing to unpack .../126-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 172s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 172s Selecting previously unselected package autopkgtest-satdep. 172s Preparing to unpack .../127-1-autopkgtest-satdep.deb ... 172s Unpacking autopkgtest-satdep (0) ... 172s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 172s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 172s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 172s Setting up libpaper1:arm64 (1.1.29) ... 173s 173s Creating config file /etc/papersize with new version 173s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 173s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 173s Setting up libdatrie1:arm64 (0.2.13-3) ... 173s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 173s Setting up libxcb-render0:arm64 (1.15-1) ... 173s Setting up unzip (6.0-28ubuntu3) ... 173s Setting up x11-common (1:7.7+23ubuntu2) ... 174s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 174s Setting up libdeflate0:arm64 (1.19-1) ... 174s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 174s Setting up libxcb-shm0:arm64 (1.15-1) ... 174s Setting up libpaper-utils (1.1.29) ... 174s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 174s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 174s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 174s Setting up zip (3.0-13) ... 174s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 174s Setting up libblas3:arm64 (3.12.0-3) ... 174s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 174s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 174s Setting up libpkgconf3:arm64 (1.8.1-2) ... 174s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 174s Setting up fonts-dejavu-mono (2.37-8) ... 174s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 174s Setting up libmpc3:arm64 (1.3.1-1) ... 174s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 174s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 174s Setting up icu-devtools (74.2-1ubuntu1) ... 174s Setting up fonts-dejavu-core (2.37-8) ... 174s Setting up pkgconf-bin (1.8.1-2) ... 174s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 174s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 174s Setting up libwebp7:arm64 (1.3.2-0.4) ... 174s Setting up libreadline8t64:arm64 (8.2-3.1) ... 174s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 174s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 174s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 174s Setting up libnsl-dev:arm64 (1.3.0-3) ... 174s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 174s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 174s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 174s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 174s Setting up libthai-data (0.1.29-2) ... 174s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 174s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 174s Setting up libisl23:arm64 (0.26-3) ... 174s Setting up libc-dev-bin (2.39-0ubuntu2) ... 174s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 174s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 174s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 174s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 175s Setting up libblas-dev:arm64 (3.12.0-3) ... 175s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 175s Setting up dctrl-tools (2.24-3build2) ... 175s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 175s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 175s Setting up libice6:arm64 (2:1.0.10-1build2) ... 175s Setting up liblapack3:arm64 (3.12.0-3) ... 175s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 175s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 175s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 175s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 176s Setting up pkgconf:arm64 (1.8.1-2) ... 176s Setting up libthai0:arm64 (0.1.29-2) ... 176s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 176s Setting up liblapack-dev:arm64 (3.12.0-3) ... 176s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 176s Setting up pkg-config:arm64 (1.8.1-2) ... 176s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 176s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 176s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 176s Setting up curl (8.5.0-2ubuntu7) ... 176s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 176s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 176s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 176s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 176s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 176s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 176s Setting up fontconfig (2.15.0-1ubuntu1) ... 178s Regenerating fonts cache... done. 178s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 178s Setting up libxft2:arm64 (2.3.6-1) ... 178s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 178s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 178s Setting up cpp-13 (13.2.0-17ubuntu2) ... 178s Setting up libtk8.6:arm64 (8.6.13-2) ... 178s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 178s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 178s Setting up libreadline-dev:arm64 (8.2-3.1) ... 178s Setting up libcairo2:arm64 (1.18.0-1) ... 178s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 178s Setting up gcc-13 (13.2.0-17ubuntu2) ... 178s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 178s Setting up cpp (4:13.2.0-7ubuntu1) ... 178s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 178s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 178s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 178s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 178s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 178s Setting up g++-13 (13.2.0-17ubuntu2) ... 178s Setting up libpng-dev:arm64 (1.6.43-3) ... 178s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 178s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 178s Setting up gcc (4:13.2.0-7ubuntu1) ... 178s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 178s Setting up r-base-core (4.3.3-2build1) ... 178s 178s Creating config file /etc/R/Renviron with new version 179s Setting up r-cran-crayon (1.5.2-1) ... 179s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 179s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 179s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 179s Setting up r-bioc-biocgenerics (0.48.1-2) ... 179s Setting up gfortran (4:13.2.0-7ubuntu1) ... 179s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 179s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 179s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 179s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 179s Setting up r-cran-bitops (1.0-7-1) ... 179s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 179s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 179s Setting up r-bioc-biobase (2.62.0-1) ... 179s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 179s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 179s Setting up g++ (4:13.2.0-7ubuntu1) ... 179s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 179s Setting up build-essential (12.10ubuntu1) ... 179s Setting up r-bioc-preprocesscore (1.64.0+ds-1) ... 179s Setting up r-bioc-iranges (2.36.0-1) ... 179s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 179s Setting up r-bioc-graph (1.80.0-1) ... 179s Setting up r-bioc-affyio (1.72.0-1) ... 179s Setting up r-base-dev (4.3.3-2build1) ... 179s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 179s Setting up r-bioc-affy (1.80.0-1) ... 179s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 179s Setting up r-bioc-xvector (0.42.0-1) ... 179s Setting up r-bioc-hypergraph (1.74.0-1) ... 179s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 179s Setting up r-bioc-makecdfenv (1.78.0-1) ... 179s Setting up r-bioc-altcdfenvs (1:2.64.0-1) ... 179s Setting up autopkgtest-satdep (0) ... 179s Processing triggers for man-db (2.12.0-3) ... 180s Processing triggers for install-info (7.1-3) ... 180s Processing triggers for libc-bin (2.39-0ubuntu2) ... 188s (Reading database ... 81729 files and directories currently installed.) 188s Removing autopkgtest-satdep (0) ... 189s autopkgtest [17:21:51]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 189s autopkgtest [17:21:51]: test pkg-r-autopkgtest: [----------------------- 189s Test: Try to load the R library altcdfenvs 190s 190s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 190s Copyright (C) 2024 The R Foundation for Statistical Computing 190s Platform: aarch64-unknown-linux-gnu (64-bit) 190s 190s R is free software and comes with ABSOLUTELY NO WARRANTY. 190s You are welcome to redistribute it under certain conditions. 190s Type 'license()' or 'licence()' for distribution details. 190s 190s R is a collaborative project with many contributors. 190s Type 'contributors()' for more information and 190s 'citation()' on how to cite R or R packages in publications. 190s 190s Type 'demo()' for some demos, 'help()' for on-line help, or 190s 'help.start()' for an HTML browser interface to help. 190s Type 'q()' to quit R. 190s 190s > library('altcdfenvs') 190s Loading required package: BiocGenerics 190s 190s Attaching package: ‘BiocGenerics’ 190s 190s The following objects are masked from ‘package:stats’: 190s 190s IQR, mad, sd, var, xtabs 190s 190s The following objects are masked from ‘package:base’: 190s 190s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 190s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 190s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 190s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 190s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 190s table, tapply, union, unique, unsplit, which.max, which.min 190s 190s Loading required package: S4Vectors 190s Loading required package: stats4 191s 191s Attaching package: ‘S4Vectors’ 191s 191s The following object is masked from ‘package:utils’: 191s 191s findMatches 191s 191s The following objects are masked from ‘package:base’: 191s 191s expand.grid, I, unname 191s 191s Loading required package: Biobase 191s Welcome to Bioconductor 191s 191s Vignettes contain introductory material; view with 191s 'browseVignettes()'. To cite Bioconductor, see 191s 'citation("Biobase")', and for packages 'citation("pkgname")'. 191s 191s Loading required package: affy 191s Loading required package: makecdfenv 191s Loading required package: affyio 192s Loading required package: Biostrings 192s Loading required package: IRanges 192s Loading required package: XVector 192s Loading required package: GenomeInfoDb 194s 194s Attaching package: ‘Biostrings’ 194s 194s The following object is masked from ‘package:base’: 194s 194s strsplit 194s 194s Loading required package: hypergraph 194s Loading required package: graph 194s 194s Attaching package: ‘graph’ 194s 194s The following object is masked from ‘package:Biostrings’: 194s 194s complement 194s 194s > 194s > 194s Other tests are currently unsupported! 194s They will be progressively added. 195s autopkgtest [17:21:57]: test pkg-r-autopkgtest: -----------------------] 196s autopkgtest [17:21:58]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 196s pkg-r-autopkgtest PASS 196s autopkgtest [17:21:58]: @@@@@@@@@@@@@@@@@@@@ summary 196s pkg-r-autopkgtest PASS 207s Creating nova instance adt-noble-arm64-r-bioc-altcdfenvs-20240316-171842-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...