0s autopkgtest [17:18:30]: starting date and time: 2024-03-16 17:18:30+0000
  0s autopkgtest [17:18:30]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [17:18:30]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.sqivq5jy/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-all --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-17.secgroup --name adt-noble-arm64-r-bioc-all-20240316-171829-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
219s autopkgtest [17:22:09]: testbed dpkg architecture: arm64
219s autopkgtest [17:22:09]: testbed apt version: 2.7.12
219s autopkgtest [17:22:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup
221s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
222s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
222s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB]
223s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB]
223s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
223s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
223s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
223s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
223s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
223s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB]
224s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
224s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB]
224s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
238s Fetched 9063 kB in 7s (1392 kB/s)
238s Reading package lists...
246s Reading package lists...
247s Building dependency tree...
247s Reading state information...
250s Calculating upgrade...
251s The following packages will be REMOVED:
251s   libglib2.0-0 libssl3
251s The following NEW packages will be installed:
251s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
251s The following packages have been kept back:
251s   curl
251s The following packages will be upgraded:
251s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
251s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
251s Need to get 4592 kB of archives.
251s After this operation, 211 kB of additional disk space will be used.
251s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
252s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
252s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
252s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
252s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
252s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
252s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
252s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
254s Fetched 4592 kB in 1s (4865 kB/s)
254s (Reading database ... 
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(Reading database ... 75850 files and directories currently installed.)
254s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
254s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
255s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
255s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
255s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
255s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
255s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
255s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
255s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
255s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
255s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
255s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
255s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
255s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
255s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
255s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
255s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
255s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
255s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
255s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
255s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
255s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
255s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
255s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
255s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
255s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
255s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
255s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
255s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
255s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
255s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
255s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
255s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
255s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
255s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
255s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
255s  fwupd depends on libglib2.0-0 (>= 2.79.0).
255s  bolt depends on libglib2.0-0 (>= 2.56.0).
255s 
255s (Reading database ... 
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(Reading database ... 75850 files and directories currently installed.)
255s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
255s Selecting previously unselected package libglib2.0-0t64:arm64.
255s (Reading database ... 
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(Reading database ... 75825 files and directories currently installed.)
255s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
255s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
255s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
255s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
255s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
255s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
256s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
256s  wget depends on libssl3 (>= 3.0.0).
256s  u-boot-tools depends on libssl3 (>= 3.0.0).
256s  tnftp depends on libssl3 (>= 3.0.0).
256s  tcpdump depends on libssl3 (>= 3.0.0).
256s  systemd-resolved depends on libssl3 (>= 3.0.0).
256s  systemd depends on libssl3 (>= 3.0.0).
256s  sudo depends on libssl3 (>= 3.0.0).
256s  sbsigntool depends on libssl3 (>= 3.0.0).
256s  rsync depends on libssl3 (>= 3.0.0).
256s  python3-cryptography depends on libssl3 (>= 3.0.0).
256s  openssh-server depends on libssl3 (>= 3.0.10).
256s  openssh-client depends on libssl3 (>= 3.0.10).
256s  mtd-utils depends on libssl3 (>= 3.0.0).
256s  mokutil depends on libssl3 (>= 3.0.0).
256s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
256s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
256s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
256s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
256s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
256s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
256s  libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0).
256s  libnvme1 depends on libssl3 (>= 3.0.0).
256s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
256s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
256s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
256s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
256s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
256s  kmod depends on libssl3 (>= 3.0.0).
256s  dhcpcd-base depends on libssl3 (>= 3.0.0).
256s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
256s 
256s (Reading database ... 
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(Reading database ... 75850 files and directories currently installed.)
256s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
256s Selecting previously unselected package libssl3t64:arm64.
257s (Reading database ... 
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(Reading database ... 75839 files and directories currently installed.)
257s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
257s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
257s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
257s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
257s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ...
257s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
257s Preparing to unpack .../readline-common_8.2-3.1_all.deb ...
257s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
257s Selecting previously unselected package xdg-user-dirs.
257s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ...
257s Unpacking xdg-user-dirs (0.18-1) ...
258s Setting up xdg-user-dirs (0.18-1) ...
258s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
258s Setting up libtirpc-common (1.3.4+ds-1.1) ...
258s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
258s No schema files found: doing nothing.
258s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
258s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
258s Setting up openssl (3.0.13-0ubuntu1) ...
258s Setting up readline-common (8.2-3.1) ...
258s Processing triggers for man-db (2.12.0-3) ...
260s Processing triggers for install-info (7.1-3) ...
261s Processing triggers for libc-bin (2.39-0ubuntu2) ...
262s Reading package lists...
263s Building dependency tree...
263s Reading state information...
265s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
266s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
266s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
266s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
266s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
275s Reading package lists...
275s Reading package lists...
276s Building dependency tree...
276s Reading state information...
279s Calculating upgrade...
280s The following packages have been kept back:
280s   curl
281s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
281s Reading package lists...
282s Building dependency tree...
282s Reading state information...
285s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
291s autopkgtest [17:23:21]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
292s autopkgtest [17:23:22]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-all
296s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-all 1.44.0-1 (dsc) [2034 B]
296s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-all 1.44.0-1 (tar) [11.4 MB]
296s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-all 1.44.0-1 (diff) [5060 B]
297s gpgv: Signature made Thu Nov 30 10:44:06 2023 UTC
297s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
297s gpgv:                issuer "tille@debian.org"
297s gpgv: Can't check signature: No public key
297s dpkg-source: warning: cannot verify inline signature for ./r-bioc-all_1.44.0-1.dsc: no acceptable signature found
298s autopkgtest [17:23:28]: testing package r-bioc-all version 1.44.0-1
299s autopkgtest [17:23:29]: build not needed
301s autopkgtest [17:23:31]: test pkg-r-autopkgtest: preparing testbed
303s Reading package lists...
304s Building dependency tree...
304s Reading state information...
306s Starting pkgProblemResolver with broken count: 0
307s Starting 2 pkgProblemResolver with broken count: 0
307s Done
309s The following additional packages will be installed:
309s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
309s   curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core
309s   fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu
309s   gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran
309s   gfortran-13 gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu
309s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libbz2-dev
309s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64
309s   libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev
309s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
309s   libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
309s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4
309s   liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0
309s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
309s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
309s   libpng-dev libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64
309s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
309s   libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7
309s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
309s   linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core
309s   r-base-dev r-bioc-all r-bioc-biobase r-bioc-biocgenerics r-cran-lattice
309s   r-cran-matrix r-cran-rpart r-cran-survival rpcsvc-proto unzip x11-common
309s   xdg-utils zip zlib1g-dev
309s Suggested packages:
309s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
309s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
309s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
309s   liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc
309s   libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib
309s   r-base-html texlive-base texlive-latex-base texlive-plain-generic
309s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
309s   texlive-latex-recommended texlive-latex-extra texinfo r-cran-runit
309s   r-bioc-biocstyle r-cran-knitr r-bioc-s4vectors r-bioc-iranges
309s   r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools
309s   r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate
309s Recommended packages:
309s   bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended
309s   r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
309s   x11-utils x11-xserver-utils
310s The following packages will be REMOVED:
310s   libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3
310s The following NEW packages will be installed:
310s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
310s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
310s   fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu
310s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
310s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
310s   gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev
310s   libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev
310s   libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
310s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
310s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
310s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
310s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
310s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
310s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
310s   libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64
310s   libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev
310s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6
310s   libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1
310s   libxss1 libxt6t64 linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf
310s   pkgconf-bin r-base-core r-base-dev r-bioc-all r-bioc-biobase
310s   r-bioc-biocgenerics r-cran-lattice r-cran-matrix r-cran-rpart
310s   r-cran-survival rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
310s The following packages will be upgraded:
310s   curl
310s 1 upgraded, 118 newly installed, 5 to remove and 0 not upgraded.
310s Need to get 156 MB/156 MB of archives.
310s After this operation, 452 MB of additional disk space will be used.
310s Get:1 /tmp/autopkgtest.C1alT4/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [728 B]
310s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB]
310s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB]
311s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB]
311s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB]
311s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB]
311s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB]
311s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
311s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
311s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
311s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB]
311s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
311s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
311s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
311s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
311s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
311s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
312s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
312s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
312s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
312s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
312s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
312s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
312s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
312s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
312s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
312s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
313s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
313s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
313s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
313s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
314s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
315s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
315s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
315s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
315s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
315s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
315s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
315s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
315s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
315s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
315s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
316s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
316s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
316s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
316s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
316s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
316s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
316s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
316s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
316s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
316s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
316s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
316s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
316s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
316s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
316s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
316s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
316s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
316s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
316s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
316s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
316s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
316s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
316s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
316s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
316s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
317s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
317s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
317s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
317s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
317s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
317s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
317s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
317s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
318s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
318s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
318s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
318s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
318s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
318s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
318s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
318s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
318s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
318s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
318s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
318s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
318s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
318s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
318s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
318s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB]
318s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB]
318s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
318s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
318s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
318s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
318s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
318s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
318s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
318s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
318s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
319s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB]
319s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
319s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
319s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
319s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
319s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
319s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
319s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB]
321s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
321s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B]
321s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
321s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
322s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB]
322s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-all all 1.44.0-1 [11.4 MB]
322s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB]
323s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB]
323s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB]
324s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB]
326s Preconfiguring packages ...
326s Fetched 156 MB in 14s (11.5 MB/s)
327s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested:
327s  wget depends on libpsl5 (>= 0.16.0).
327s  libcurl4:arm64 depends on libpsl5 (>= 0.16.0).
327s  libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0).
327s 
327s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75866 files and directories currently installed.)
327s Removing libpsl5:arm64 (0.21.2-1build1) ...
327s Selecting previously unselected package libpsl5t64:arm64.
327s (Reading database ... 
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(Reading database ... 10%
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(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75861 files and directories currently installed.)
327s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ...
327s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ...
327s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ...
327s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
328s (Reading database ... 
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(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75867 files and directories currently installed.)
328s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ...
328s Selecting previously unselected package libcurl4t64:arm64.
328s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75862 files and directories currently installed.)
328s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ...
328s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
329s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested:
329s  libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2).
329s  libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1).
329s 
329s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75868 files and directories currently installed.)
329s Removing libpng16-16:arm64 (1.6.43-1) ...
329s Selecting previously unselected package libpng16-16t64:arm64.
329s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75858 files and directories currently installed.)
329s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ...
329s Unpacking libpng16-16t64:arm64 (1.6.43-3) ...
330s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested:
330s  parted depends on libreadline8 (>= 6.0).
330s  libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
330s  libpython3.11-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
330s  gpgsm depends on libreadline8 (>= 6.0).
330s  gpgconf depends on libreadline8 (>= 6.0).
330s  gpg depends on libreadline8 (>= 6.0).
330s  gawk depends on libreadline8 (>= 6.0).
330s  fdisk depends on libreadline8 (>= 6.0).
330s 
330s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75869 files and directories currently installed.)
330s Removing libreadline8:arm64 (8.2-3) ...
330s Selecting previously unselected package libreadline8t64:arm64.
330s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75857 files and directories currently installed.)
330s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ...
330s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
330s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
330s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
330s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
330s Unpacking libreadline8t64:arm64 (8.2-3.1) ...
330s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested:
330s  lsof depends on libtirpc3 (>= 1.0.2).
330s  libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
330s  libpython3.11-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
330s  libnsl2:arm64 depends on libtirpc3 (>= 1.0.2).
330s  iproute2 depends on libtirpc3 (>= 1.0.2).
330s 
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331s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ...
331s Selecting previously unselected package libtirpc3t64:arm64.
331s (Reading database ... 
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331s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ...
331s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
331s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
331s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
331s Selecting previously unselected package libc-dev-bin.
331s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
331s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
331s Selecting previously unselected package linux-libc-dev:arm64.
332s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ...
332s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
333s Selecting previously unselected package libcrypt-dev:arm64.
333s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
333s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
333s Selecting previously unselected package libtirpc-dev:arm64.
333s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ...
333s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
333s Selecting previously unselected package libnsl-dev:arm64.
333s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ...
333s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
334s Selecting previously unselected package rpcsvc-proto.
334s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
334s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
334s Selecting previously unselected package libc6-dev:arm64.
334s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ...
334s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
335s Selecting previously unselected package libisl23:arm64.
335s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ...
335s Unpacking libisl23:arm64 (0.26-3) ...
336s Selecting previously unselected package libmpc3:arm64.
336s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ...
336s Unpacking libmpc3:arm64 (1.3.1-1) ...
336s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
336s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
336s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
337s Selecting previously unselected package cpp-13.
337s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
337s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
337s Selecting previously unselected package cpp-aarch64-linux-gnu.
337s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
337s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
337s Selecting previously unselected package cpp.
337s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
337s Unpacking cpp (4:13.2.0-7ubuntu1) ...
338s Selecting previously unselected package libcc1-0:arm64.
338s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
338s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
338s Selecting previously unselected package libgomp1:arm64.
338s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
338s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
338s Selecting previously unselected package libitm1:arm64.
338s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ...
338s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
338s Selecting previously unselected package libatomic1:arm64.
338s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
338s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
338s Selecting previously unselected package libasan8:arm64.
338s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ...
338s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
339s Selecting previously unselected package liblsan0:arm64.
339s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
339s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
339s Selecting previously unselected package libtsan2:arm64.
339s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
339s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
340s Selecting previously unselected package libubsan1:arm64.
340s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
340s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
340s Selecting previously unselected package libhwasan0:arm64.
340s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
340s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
341s Selecting previously unselected package libgcc-13-dev:arm64.
341s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
341s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
341s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
341s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
341s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
344s Selecting previously unselected package gcc-13.
344s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
344s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
344s Selecting previously unselected package gcc-aarch64-linux-gnu.
344s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
344s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
344s Selecting previously unselected package gcc.
344s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
344s Unpacking gcc (4:13.2.0-7ubuntu1) ...
345s Selecting previously unselected package libstdc++-13-dev:arm64.
345s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
345s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
346s Selecting previously unselected package g++-13-aarch64-linux-gnu.
346s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
346s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
347s Selecting previously unselected package g++-13.
347s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ...
347s Unpacking g++-13 (13.2.0-17ubuntu2) ...
347s Selecting previously unselected package g++-aarch64-linux-gnu.
347s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
347s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
347s Selecting previously unselected package g++.
347s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
347s Unpacking g++ (4:13.2.0-7ubuntu1) ...
347s Selecting previously unselected package build-essential.
348s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ...
348s Unpacking build-essential (12.10ubuntu1) ...
348s Selecting previously unselected package dctrl-tools.
348s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ...
348s Unpacking dctrl-tools (2.24-3build2) ...
348s Selecting previously unselected package fonts-dejavu-mono.
348s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
348s Unpacking fonts-dejavu-mono (2.37-8) ...
348s Selecting previously unselected package fonts-dejavu-core.
348s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
348s Unpacking fonts-dejavu-core (2.37-8) ...
348s Selecting previously unselected package fontconfig-config.
348s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
349s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
350s Selecting previously unselected package libfontconfig1:arm64.
350s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
350s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
350s Selecting previously unselected package fontconfig.
350s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
350s Unpacking fontconfig (2.15.0-1ubuntu1) ...
350s Selecting previously unselected package libgfortran5:arm64.
350s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
350s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
350s Selecting previously unselected package libgfortran-13-dev:arm64.
350s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ...
350s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
350s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
350s Preparing to unpack .../042-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
350s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
352s Selecting previously unselected package gfortran-13.
352s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_arm64.deb ...
352s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
352s Selecting previously unselected package gfortran-aarch64-linux-gnu.
352s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
352s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
352s Selecting previously unselected package gfortran.
352s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ...
352s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
352s Selecting previously unselected package icu-devtools.
352s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_arm64.deb ...
352s Unpacking icu-devtools (74.2-1ubuntu1) ...
353s Selecting previously unselected package libblas3:arm64.
353s Preparing to unpack .../047-libblas3_3.12.0-3_arm64.deb ...
353s Unpacking libblas3:arm64 (3.12.0-3) ...
353s Selecting previously unselected package libblas-dev:arm64.
354s Preparing to unpack .../048-libblas-dev_3.12.0-3_arm64.deb ...
354s Unpacking libblas-dev:arm64 (3.12.0-3) ...
354s Selecting previously unselected package libbz2-dev:arm64.
354s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ...
354s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
354s Selecting previously unselected package libpixman-1-0:arm64.
354s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_arm64.deb ...
354s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
354s Selecting previously unselected package libxcb-render0:arm64.
354s Preparing to unpack .../051-libxcb-render0_1.15-1_arm64.deb ...
354s Unpacking libxcb-render0:arm64 (1.15-1) ...
355s Selecting previously unselected package libxcb-shm0:arm64.
355s Preparing to unpack .../052-libxcb-shm0_1.15-1_arm64.deb ...
355s Unpacking libxcb-shm0:arm64 (1.15-1) ...
355s Selecting previously unselected package libxrender1:arm64.
355s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
355s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
355s Selecting previously unselected package libcairo2:arm64.
355s Preparing to unpack .../054-libcairo2_1.18.0-1_arm64.deb ...
355s Unpacking libcairo2:arm64 (1.18.0-1) ...
355s Selecting previously unselected package libdatrie1:arm64.
355s Preparing to unpack .../055-libdatrie1_0.2.13-3_arm64.deb ...
355s Unpacking libdatrie1:arm64 (0.2.13-3) ...
355s Selecting previously unselected package libdeflate0:arm64.
355s Preparing to unpack .../056-libdeflate0_1.19-1_arm64.deb ...
355s Unpacking libdeflate0:arm64 (1.19-1) ...
356s Selecting previously unselected package libgraphite2-3:arm64.
356s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_arm64.deb ...
356s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
356s Selecting previously unselected package libharfbuzz0b:arm64.
356s Preparing to unpack .../058-libharfbuzz0b_8.3.0-2_arm64.deb ...
356s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
356s Selecting previously unselected package x11-common.
356s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu2_all.deb ...
356s Unpacking x11-common (1:7.7+23ubuntu2) ...
357s Selecting previously unselected package libice6:arm64.
357s Preparing to unpack .../060-libice6_2%3a1.0.10-1build2_arm64.deb ...
357s Unpacking libice6:arm64 (2:1.0.10-1build2) ...
357s Selecting previously unselected package libicu-dev:arm64.
357s Preparing to unpack .../061-libicu-dev_74.2-1ubuntu1_arm64.deb ...
357s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ...
358s Selecting previously unselected package libjpeg-turbo8:arm64.
358s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
358s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
359s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
359s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ...
359s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
359s Selecting previously unselected package libjpeg8:arm64.
359s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_arm64.deb ...
359s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
359s Selecting previously unselected package libjpeg8-dev:arm64.
359s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
359s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
359s Selecting previously unselected package libjpeg-dev:arm64.
359s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
359s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
359s Selecting previously unselected package liblapack3:arm64.
359s Preparing to unpack .../067-liblapack3_3.12.0-3_arm64.deb ...
359s Unpacking liblapack3:arm64 (3.12.0-3) ...
359s Selecting previously unselected package liblapack-dev:arm64.
359s Preparing to unpack .../068-liblapack-dev_3.12.0-3_arm64.deb ...
359s Unpacking liblapack-dev:arm64 (3.12.0-3) ...
360s Selecting previously unselected package liblerc4:arm64.
360s Preparing to unpack .../069-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
360s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
360s Selecting previously unselected package libncurses-dev:arm64.
360s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ...
360s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
360s Selecting previously unselected package libthai-data.
361s Preparing to unpack .../071-libthai-data_0.1.29-2_all.deb ...
361s Unpacking libthai-data (0.1.29-2) ...
361s Selecting previously unselected package libthai0:arm64.
361s Preparing to unpack .../072-libthai0_0.1.29-2_arm64.deb ...
361s Unpacking libthai0:arm64 (0.1.29-2) ...
361s Selecting previously unselected package libpango-1.0-0:arm64.
361s Preparing to unpack .../073-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
361s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ...
361s Selecting previously unselected package libpangoft2-1.0-0:arm64.
361s Preparing to unpack .../074-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
361s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
361s Selecting previously unselected package libpangocairo-1.0-0:arm64.
361s Preparing to unpack .../075-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
361s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
361s Selecting previously unselected package libpaper1:arm64.
361s Preparing to unpack .../076-libpaper1_1.1.29_arm64.deb ...
361s Unpacking libpaper1:arm64 (1.1.29) ...
361s Selecting previously unselected package libpaper-utils.
361s Preparing to unpack .../077-libpaper-utils_1.1.29_arm64.deb ...
361s Unpacking libpaper-utils (1.1.29) ...
361s Selecting previously unselected package libpcre2-16-0:arm64.
361s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ...
361s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
362s Selecting previously unselected package libpcre2-32-0:arm64.
362s Preparing to unpack .../079-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ...
362s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
362s Selecting previously unselected package libpcre2-posix3:arm64.
362s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ...
362s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
362s Selecting previously unselected package libpcre2-dev:arm64.
362s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_arm64.deb ...
362s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ...
362s Selecting previously unselected package libpkgconf3:arm64.
362s Preparing to unpack .../082-libpkgconf3_1.8.1-2_arm64.deb ...
362s Unpacking libpkgconf3:arm64 (1.8.1-2) ...
362s Selecting previously unselected package zlib1g-dev:arm64.
362s Preparing to unpack .../083-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ...
362s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
363s Selecting previously unselected package libpng-dev:arm64.
363s Preparing to unpack .../084-libpng-dev_1.6.43-3_arm64.deb ...
363s Unpacking libpng-dev:arm64 (1.6.43-3) ...
363s Selecting previously unselected package libreadline-dev:arm64.
363s Preparing to unpack .../085-libreadline-dev_8.2-3.1_arm64.deb ...
363s Unpacking libreadline-dev:arm64 (8.2-3.1) ...
363s Selecting previously unselected package libsharpyuv0:arm64.
363s Preparing to unpack .../086-libsharpyuv0_1.3.2-0.4_arm64.deb ...
363s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
363s Selecting previously unselected package libsm6:arm64.
363s Preparing to unpack .../087-libsm6_2%3a1.2.3-1build2_arm64.deb ...
363s Unpacking libsm6:arm64 (2:1.2.3-1build2) ...
363s Selecting previously unselected package libtcl8.6:arm64.
363s Preparing to unpack .../088-libtcl8.6_8.6.13+dfsg-2_arm64.deb ...
363s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ...
364s Selecting previously unselected package libjbig0:arm64.
364s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
364s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
364s Selecting previously unselected package libwebp7:arm64.
364s Preparing to unpack .../090-libwebp7_1.3.2-0.4_arm64.deb ...
364s Unpacking libwebp7:arm64 (1.3.2-0.4) ...
364s Selecting previously unselected package libtiff6:arm64.
364s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
364s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
364s Selecting previously unselected package libxft2:arm64.
364s Preparing to unpack .../092-libxft2_2.3.6-1_arm64.deb ...
364s Unpacking libxft2:arm64 (2.3.6-1) ...
364s Selecting previously unselected package libxss1:arm64.
364s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_arm64.deb ...
364s Unpacking libxss1:arm64 (1:1.2.3-1build2) ...
365s Selecting previously unselected package libtk8.6:arm64.
365s Preparing to unpack .../094-libtk8.6_8.6.13-2_arm64.deb ...
365s Unpacking libtk8.6:arm64 (8.6.13-2) ...
365s Selecting previously unselected package libxt6t64:arm64.
365s Preparing to unpack .../095-libxt6t64_1%3a1.2.1-1.2_arm64.deb ...
365s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ...
365s Selecting previously unselected package pkgconf-bin.
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365s Unpacking pkgconf-bin (1.8.1-2) ...
365s Selecting previously unselected package pkgconf:arm64.
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365s Unpacking pkgconf:arm64 (1.8.1-2) ...
366s Selecting previously unselected package pkg-config:arm64.
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366s Unpacking pkg-config:arm64 (1.8.1-2) ...
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374s Unpacking autopkgtest-satdep (0) ...
374s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
374s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
374s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
374s Setting up libpaper1:arm64 (1.1.29) ...
375s 
375s Creating config file /etc/papersize with new version
375s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
375s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
375s Setting up libdatrie1:arm64 (0.2.13-3) ...
375s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
375s Setting up libxcb-render0:arm64 (1.15-1) ...
375s Setting up unzip (6.0-28ubuntu3) ...
375s Setting up x11-common (1:7.7+23ubuntu2) ...
378s Setting up libpsl5t64:arm64 (0.21.2-1.1) ...
378s Setting up libdeflate0:arm64 (1.19-1) ...
378s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ...
378s Setting up libxcb-shm0:arm64 (1.15-1) ...
378s Setting up libpaper-utils (1.1.29) ...
378s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
378s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
378s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
378s Setting up zip (3.0-13) ...
378s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
378s Setting up libblas3:arm64 (3.12.0-3) ...
378s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
379s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
379s Setting up libpkgconf3:arm64 (1.8.1-2) ...
379s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
379s Setting up fonts-dejavu-mono (2.37-8) ...
379s Setting up libpng16-16t64:arm64 (1.6.43-3) ...
379s Setting up libmpc3:arm64 (1.3.1-1) ...
379s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ...
379s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ...
379s Setting up icu-devtools (74.2-1ubuntu1) ...
379s Setting up fonts-dejavu-core (2.37-8) ...
379s Setting up pkgconf-bin (1.8.1-2) ...
379s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
379s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
379s Setting up libwebp7:arm64 (1.3.2-0.4) ...
379s Setting up libreadline8t64:arm64 (8.2-3.1) ...
379s Setting up liblzma-dev:arm64 (5.4.5-0.3) ...
379s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ...
379s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
379s Setting up libnsl-dev:arm64 (1.3.0-3) ...
379s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ...
379s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ...
379s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ...
379s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
379s Setting up libthai-data (0.1.29-2) ...
379s Setting up libxss1:arm64 (1:1.2.3-1build2) ...
379s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ...
379s Setting up libisl23:arm64 (0.26-3) ...
379s Setting up libc-dev-bin (2.39-0ubuntu2) ...
379s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
379s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
379s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ...
379s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ...
379s Setting up libblas-dev:arm64 (3.12.0-3) ...
379s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
379s Setting up dctrl-tools (2.24-3build2) ...
379s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ...
379s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
379s Setting up libice6:arm64 (2:1.0.10-1build2) ...
379s Setting up liblapack3:arm64 (3.12.0-3) ...
379s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
379s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
379s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
379s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
380s Setting up pkgconf:arm64 (1.8.1-2) ...
380s Setting up libthai0:arm64 (0.1.29-2) ...
380s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
380s Setting up liblapack-dev:arm64 (3.12.0-3) ...
380s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
380s Setting up pkg-config:arm64 (1.8.1-2) ...
380s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
380s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
380s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ...
380s Setting up curl (8.5.0-2ubuntu7) ...
380s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
380s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
380s Setting up libsm6:arm64 (2:1.2.3-1build2) ...
380s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ...
380s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
380s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
380s Setting up fontconfig (2.15.0-1ubuntu1) ...
382s Regenerating fonts cache... done.
382s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
382s Setting up libxft2:arm64 (2.3.6-1) ...
383s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
383s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ...
383s Setting up cpp-13 (13.2.0-17ubuntu2) ...
383s Setting up libtk8.6:arm64 (8.6.13-2) ...
383s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
383s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
383s Setting up libreadline-dev:arm64 (8.2-3.1) ...
383s Setting up libcairo2:arm64 (1.18.0-1) ...
383s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ...
383s Setting up gcc-13 (13.2.0-17ubuntu2) ...
383s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
383s Setting up cpp (4:13.2.0-7ubuntu1) ...
383s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
383s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
383s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
383s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
383s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
383s Setting up g++-13 (13.2.0-17ubuntu2) ...
383s Setting up libpng-dev:arm64 (1.6.43-3) ...
383s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
383s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
383s Setting up gcc (4:13.2.0-7ubuntu1) ...
383s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
383s Setting up r-base-core (4.3.3-2build1) ...
384s 
384s Creating config file /etc/R/Renviron with new version
385s Setting up r-cran-lattice (0.22-5-1) ...
385s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
385s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
385s Setting up r-bioc-biocgenerics (0.48.1-2) ...
385s Setting up gfortran (4:13.2.0-7ubuntu1) ...
385s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
385s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
385s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
385s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
385s Setting up r-bioc-biobase (2.62.0-1) ...
385s Setting up r-cran-matrix (1.6-5-1) ...
385s Setting up g++ (4:13.2.0-7ubuntu1) ...
385s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
385s Setting up build-essential (12.10ubuntu1) ...
385s Setting up r-base-dev (4.3.3-2build1) ...
385s Setting up r-bioc-all (1.44.0-1) ...
385s Setting up r-cran-survival (3.5-8-1) ...
385s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
385s Setting up r-cran-rpart (4.1.23-1) ...
385s Setting up autopkgtest-satdep (0) ...
385s Processing triggers for man-db (2.12.0-3) ...
389s Processing triggers for install-info (7.1-3) ...
389s Processing triggers for libc-bin (2.39-0ubuntu2) ...
412s (Reading database ... 81999 files and directories currently installed.)
412s Removing autopkgtest-satdep (0) ...
413s autopkgtest [17:25:23]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
413s autopkgtest [17:25:23]: test pkg-r-autopkgtest: [-----------------------
414s Test: Try to load the R library ALL
414s 
414s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
414s Copyright (C) 2024 The R Foundation for Statistical Computing
414s Platform: aarch64-unknown-linux-gnu (64-bit)
414s 
414s R is free software and comes with ABSOLUTELY NO WARRANTY.
414s You are welcome to redistribute it under certain conditions.
414s Type 'license()' or 'licence()' for distribution details.
414s 
414s R is a collaborative project with many contributors.
414s Type 'contributors()' for more information and
414s 'citation()' on how to cite R or R packages in publications.
414s 
414s Type 'demo()' for some demos, 'help()' for on-line help, or
414s 'help.start()' for an HTML browser interface to help.
414s Type 'q()' to quit R.
414s 
415s > library('ALL')
415s Loading required package: Biobase
415s Loading required package: BiocGenerics
415s 
415s Attaching package: ‘BiocGenerics’
415s 
415s The following objects are masked from ‘package:stats’:
415s 
415s     IQR, mad, sd, var, xtabs
415s 
415s The following objects are masked from ‘package:base’:
415s 
415s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
415s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
415s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
415s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
415s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
415s     table, tapply, union, unique, unsplit, which.max, which.min
415s 
416s Welcome to Bioconductor
416s 
416s     Vignettes contain introductory material; view with
416s     'browseVignettes()'. To cite Bioconductor, see
416s     'citation("Biobase")', and for packages 'citation("pkgname")'.
416s 
416s > 
416s > 
416s Other tests are currently unsupported!
416s They will be progressively added.
416s autopkgtest [17:25:26]: test pkg-r-autopkgtest: -----------------------]
417s pkg-r-autopkgtest    PASS
417s autopkgtest [17:25:27]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
418s autopkgtest [17:25:28]: @@@@@@@@@@@@@@@@@@@@ summary
418s pkg-r-autopkgtest    PASS
428s Creating nova instance adt-noble-arm64-r-bioc-all-20240316-171829-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...