0s autopkgtest [17:18:16]: starting date and time: 2024-03-16 17:18:16+0000 0s autopkgtest [17:18:16]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:18:16]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ht99cclu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-affy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-25.secgroup --name adt-noble-arm64-r-bioc-affy-20240316-171816-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 79s autopkgtest [17:19:35]: testbed dpkg architecture: arm64 79s autopkgtest [17:19:35]: testbed apt version: 2.7.12 79s autopkgtest [17:19:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 79s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 80s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 80s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 80s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 80s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 80s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 80s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 80s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 80s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 80s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 80s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 80s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 80s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 82s Fetched 9063 kB in 2s (4731 kB/s) 83s Reading package lists... 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Calculating upgrade... 88s The following packages will be REMOVED: 88s libglib2.0-0 libssl3 88s The following NEW packages will be installed: 88s libglib2.0-0t64 libssl3t64 xdg-user-dirs 88s The following packages have been kept back: 88s curl 88s The following packages will be upgraded: 88s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 88s ubuntu-minimal ubuntu-standard 88s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 88s Need to get 4613 kB of archives. 88s After this operation, 211 kB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 89s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 89s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 89s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 89s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 89s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 89s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 89s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 89s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 89s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 90s Fetched 4613 kB in 1s (5658 kB/s) 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 91s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 91s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 91s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 91s udisks2 depends on libglib2.0-0 (>= 2.77.0). 91s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 91s python3-gi depends on libglib2.0-0 (>= 2.77.0). 91s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 91s netplan.io depends on libglib2.0-0 (>= 2.70.0). 91s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 91s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 91s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 91s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 91s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 91s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 91s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 91s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 91s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 91s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 91s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 91s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 91s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 91s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 91s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 91s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 91s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 91s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 91s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 91s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 91s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 91s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 91s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 91s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 91s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 91s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 91s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 91s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 91s fwupd depends on libglib2.0-0 (>= 2.79.0). 91s bolt depends on libglib2.0-0 (>= 2.56.0). 91s 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 91s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 91s Selecting previously unselected package libglib2.0-0t64:arm64. 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 91s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 91s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 91s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 91s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 91s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 91s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 91s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 91s wget depends on libssl3 (>= 3.0.0). 91s u-boot-tools depends on libssl3 (>= 3.0.0). 91s tnftp depends on libssl3 (>= 3.0.0). 91s tcpdump depends on libssl3 (>= 3.0.0). 91s systemd-resolved depends on libssl3 (>= 3.0.0). 91s systemd depends on libssl3 (>= 3.0.0). 91s sudo depends on libssl3 (>= 3.0.0). 91s sbsigntool depends on libssl3 (>= 3.0.0). 91s rsync depends on libssl3 (>= 3.0.0). 91s python3-cryptography depends on libssl3 (>= 3.0.0). 91s openssh-server depends on libssl3 (>= 3.0.10). 91s openssh-client depends on libssl3 (>= 3.0.10). 91s mtd-utils depends on libssl3 (>= 3.0.0). 91s mokutil depends on libssl3 (>= 3.0.0). 91s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 91s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 91s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 91s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 91s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 91s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 91s libnvme1 depends on libssl3 (>= 3.0.0). 91s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 91s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 91s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 91s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 91s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 91s kmod depends on libssl3 (>= 3.0.0). 91s dhcpcd-base depends on libssl3 (>= 3.0.0). 91s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 91s 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 91s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 91s Selecting previously unselected package libssl3t64:arm64. 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 91s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 91s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 91s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 91s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 91s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 91s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 91s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 91s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 91s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 91s Unpacking ubuntu-minimal (1.536) over (1.535) ... 91s Selecting previously unselected package xdg-user-dirs. 91s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 91s Unpacking xdg-user-dirs (0.18-1) ... 91s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 91s Unpacking ubuntu-standard (1.536) over (1.535) ... 91s Setting up ubuntu-minimal (1.536) ... 91s Setting up xdg-user-dirs (0.18-1) ... 92s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 92s Setting up libtirpc-common (1.3.4+ds-1.1) ... 92s Setting up ubuntu-standard (1.536) ... 92s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 92s No schema files found: doing nothing. 92s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 92s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 92s Setting up openssl (3.0.13-0ubuntu1) ... 92s Setting up readline-common (8.2-3.1) ... 92s Processing triggers for man-db (2.12.0-3) ... 92s Processing triggers for install-info (7.1-3) ... 93s Processing triggers for libc-bin (2.39-0ubuntu2) ... 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 95s sh: Attempting to set up Debian/Ubuntu apt sources automatically 95s sh: Distribution appears to be Ubuntu 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 97s eatmydata is already the newest version (131-1). 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 98s dbus is already the newest version (1.14.10-4ubuntu1). 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 99s rng-tools-debian is already the newest version (2.4). 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 100s The following packages will be REMOVED: 100s cloud-init* python3-configobj* python3-debconf* 101s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 101s After this operation, 3252 kB disk space will be freed. 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 101s Removing cloud-init (24.1.1-0ubuntu1) ... 102s Removing python3-configobj (5.0.8-3) ... 102s Removing python3-debconf (1.5.86) ... 102s Processing triggers for man-db (2.12.0-3) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 103s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 104s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 104s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 104s invoke-rc.d: policy-rc.d denied execution of try-restart. 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s linux-generic is already the newest version (6.8.0-11.11+1). 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 107s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 107s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 111s Reading package lists... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 112s Calculating upgrade... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s autopkgtest [17:20:09]: rebooting testbed after setup commands that affected boot 293s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 303s autopkgtest [17:23:19]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 306s autopkgtest [17:23:22]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-affy 309s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-affy 1.80.0-1 (dsc) [2139 B] 309s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-affy 1.80.0-1 (tar) [1223 kB] 309s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-affy 1.80.0-1 (diff) [5028 B] 309s gpgv: Signature made Thu Nov 30 09:13:43 2023 UTC 309s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 309s gpgv: issuer "tille@debian.org" 309s gpgv: Can't check signature: No public key 309s dpkg-source: warning: cannot verify inline signature for ./r-bioc-affy_1.80.0-1.dsc: no acceptable signature found 309s autopkgtest [17:23:25]: testing package r-bioc-affy version 1.80.0-1 309s autopkgtest [17:23:25]: build not needed 311s autopkgtest [17:23:27]: test pkg-r-autopkgtest: preparing testbed 312s Reading package lists... 312s Building dependency tree... 312s Reading state information... 313s Starting pkgProblemResolver with broken count: 0 313s Starting 2 pkgProblemResolver with broken count: 0 313s Done 313s The following additional packages will be installed: 313s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 313s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 313s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 313s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 313s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 313s libasan8 libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev 313s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 313s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 313s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 313s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 313s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 313s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 313s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 313s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 313s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data 313s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 313s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 313s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 313s r-bioc-affy r-bioc-affyio r-bioc-biobase r-bioc-biocgenerics 313s r-bioc-preprocesscore r-bioc-zlibbioc r-cran-biocmanager rpcsvc-proto unzip 313s x11-common xdg-utils zip zlib1g-dev 313s Suggested packages: 313s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 313s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 313s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 313s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 313s libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib 313s r-base-html texlive-base texlive-latex-base texlive-plain-generic 313s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 313s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all 313s r-cran-runit r-bioc-biocstyle r-cran-knitr r-bioc-s4vectors r-bioc-iranges 313s r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools 313s r-bioc-annotationdbi r-bioc-deseq2 r-bioc-annotate 313s Recommended packages: 313s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended 313s r-doc-html r-bioc-biocversion r-cran-remotes r-cran-rmarkdown 313s r-cran-testthat r-cran-withr r-cran-curl r-cran-knitr libfile-mimeinfo-perl 313s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 313s The following NEW packages will be installed: 313s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 313s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 313s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 313s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 313s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 313s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 313s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 313s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 313s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 313s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 313s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 313s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 313s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 313s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 313s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 313s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 313s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 313s linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 313s r-base-dev r-bioc-affy r-bioc-affyio r-bioc-biobase r-bioc-biocgenerics 313s r-bioc-preprocesscore r-bioc-zlibbioc r-cran-biocmanager rpcsvc-proto unzip 313s x11-common xdg-utils zip zlib1g-dev 313s 0 upgraded, 113 newly installed, 0 to remove and 0 not upgraded. 313s Need to get 134 MB/134 MB of archives. 313s After this operation, 426 MB of additional disk space will be used. 313s Get:1 /tmp/autopkgtest.EEqDQj/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 314s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 314s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 314s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 314s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 314s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 314s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 314s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 314s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 314s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 314s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 314s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 314s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 314s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 314s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 314s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 314s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 314s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 314s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 314s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 314s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 315s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 315s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 315s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 315s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 315s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 315s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 315s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 315s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 316s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 316s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 316s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 316s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 316s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 316s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 316s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 316s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 316s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 316s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 316s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 316s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 316s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 316s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 316s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 316s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 316s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 316s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 316s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 316s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 316s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 316s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 316s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 316s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 316s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 316s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 316s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 316s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 316s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 316s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 316s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 316s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 316s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 317s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 317s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 317s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 317s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 317s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 317s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 317s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 317s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 317s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 317s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 317s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 317s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 317s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 317s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 317s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 317s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 317s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 317s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 317s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 317s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 317s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 317s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 317s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 317s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 317s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 317s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 317s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 317s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 317s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 317s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 317s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 317s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 317s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 317s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 317s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 317s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 317s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 317s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 317s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 317s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 317s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 319s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 319s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 319s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 319s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 319s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 319s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 319s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affyio arm64 1.72.0-1 [87.1 kB] 319s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 319s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-preprocesscore arm64 1.64.0+ds-1 [147 kB] 319s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affy arm64 1.80.0-1 [1350 kB] 321s Preconfiguring packages ... 321s Fetched 134 MB in 6s (24.3 MB/s) 321s Selecting previously unselected package libc-dev-bin. 321s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 321s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 321s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 322s Selecting previously unselected package linux-libc-dev:arm64. 322s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 322s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 322s Selecting previously unselected package libcrypt-dev:arm64. 322s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 322s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 322s Selecting previously unselected package libtirpc-dev:arm64. 322s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 322s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 322s Selecting previously unselected package libnsl-dev:arm64. 322s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 322s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 322s Selecting previously unselected package rpcsvc-proto. 322s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 322s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 322s Selecting previously unselected package libc6-dev:arm64. 322s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 322s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 322s Selecting previously unselected package libisl23:arm64. 322s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 322s Unpacking libisl23:arm64 (0.26-3) ... 322s Selecting previously unselected package libmpc3:arm64. 322s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 322s Unpacking libmpc3:arm64 (1.3.1-1) ... 322s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 322s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 322s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 322s Selecting previously unselected package cpp-13. 322s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 322s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 322s Selecting previously unselected package cpp-aarch64-linux-gnu. 322s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 322s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 322s Selecting previously unselected package cpp. 322s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 322s Unpacking cpp (4:13.2.0-7ubuntu1) ... 322s Selecting previously unselected package libcc1-0:arm64. 322s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 322s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 322s Selecting previously unselected package libgomp1:arm64. 323s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 323s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 323s Selecting previously unselected package libitm1:arm64. 323s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 323s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 323s Selecting previously unselected package libatomic1:arm64. 323s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 323s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 323s Selecting previously unselected package libasan8:arm64. 323s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 323s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 323s Selecting previously unselected package liblsan0:arm64. 323s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 323s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 323s Selecting previously unselected package libtsan2:arm64. 323s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 323s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 323s Selecting previously unselected package libubsan1:arm64. 323s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 323s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 323s Selecting previously unselected package libhwasan0:arm64. 323s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 323s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 323s Selecting previously unselected package libgcc-13-dev:arm64. 323s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 323s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 323s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 323s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 323s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 324s Selecting previously unselected package gcc-13. 324s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 324s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 324s Selecting previously unselected package gcc-aarch64-linux-gnu. 324s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 324s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 324s Selecting previously unselected package gcc. 324s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 324s Unpacking gcc (4:13.2.0-7ubuntu1) ... 324s Selecting previously unselected package libstdc++-13-dev:arm64. 324s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 324s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 324s Selecting previously unselected package g++-13-aarch64-linux-gnu. 324s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 324s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 325s Selecting previously unselected package g++-13. 325s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 325s Unpacking g++-13 (13.2.0-17ubuntu2) ... 325s Selecting previously unselected package g++-aarch64-linux-gnu. 325s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 325s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 325s Selecting previously unselected package g++. 325s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 325s Unpacking g++ (4:13.2.0-7ubuntu1) ... 325s Selecting previously unselected package build-essential. 325s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 325s Unpacking build-essential (12.10ubuntu1) ... 325s Selecting previously unselected package dctrl-tools. 325s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 325s Unpacking dctrl-tools (2.24-3build2) ... 325s Selecting previously unselected package fonts-dejavu-mono. 325s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 325s Unpacking fonts-dejavu-mono (2.37-8) ... 325s Selecting previously unselected package fonts-dejavu-core. 325s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 325s Unpacking fonts-dejavu-core (2.37-8) ... 325s Selecting previously unselected package fontconfig-config. 325s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 326s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 326s Selecting previously unselected package libfontconfig1:arm64. 326s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 326s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 326s Selecting previously unselected package fontconfig. 326s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 326s Unpacking fontconfig (2.15.0-1ubuntu1) ... 326s Selecting previously unselected package libgfortran5:arm64. 326s Preparing to unpack .../039-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 326s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 326s Selecting previously unselected package libgfortran-13-dev:arm64. 326s Preparing to unpack .../040-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 326s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 326s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 326s Preparing to unpack .../041-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 326s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 327s Selecting previously unselected package gfortran-13. 327s Preparing to unpack .../042-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 327s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 327s Selecting previously unselected package gfortran-aarch64-linux-gnu. 327s Preparing to unpack .../043-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 327s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 327s Selecting previously unselected package gfortran. 327s Preparing to unpack .../044-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 327s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 327s Selecting previously unselected package icu-devtools. 327s Preparing to unpack .../045-icu-devtools_74.2-1ubuntu1_arm64.deb ... 327s Unpacking icu-devtools (74.2-1ubuntu1) ... 327s Selecting previously unselected package libblas3:arm64. 327s Preparing to unpack .../046-libblas3_3.12.0-3_arm64.deb ... 327s Unpacking libblas3:arm64 (3.12.0-3) ... 327s Selecting previously unselected package libblas-dev:arm64. 327s Preparing to unpack .../047-libblas-dev_3.12.0-3_arm64.deb ... 327s Unpacking libblas-dev:arm64 (3.12.0-3) ... 327s Selecting previously unselected package libbz2-dev:arm64. 327s Preparing to unpack .../048-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 327s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 327s Selecting previously unselected package libpixman-1-0:arm64. 327s Preparing to unpack .../049-libpixman-1-0_0.42.2-1_arm64.deb ... 327s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 327s Selecting previously unselected package libxcb-render0:arm64. 327s Preparing to unpack .../050-libxcb-render0_1.15-1_arm64.deb ... 327s Unpacking libxcb-render0:arm64 (1.15-1) ... 327s Selecting previously unselected package libxcb-shm0:arm64. 327s Preparing to unpack .../051-libxcb-shm0_1.15-1_arm64.deb ... 327s Unpacking libxcb-shm0:arm64 (1.15-1) ... 328s Selecting previously unselected package libxrender1:arm64. 328s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 328s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 328s Selecting previously unselected package libcairo2:arm64. 328s Preparing to unpack .../053-libcairo2_1.18.0-1_arm64.deb ... 328s Unpacking libcairo2:arm64 (1.18.0-1) ... 328s Selecting previously unselected package libdatrie1:arm64. 328s Preparing to unpack .../054-libdatrie1_0.2.13-3_arm64.deb ... 328s Unpacking libdatrie1:arm64 (0.2.13-3) ... 328s Selecting previously unselected package libdeflate0:arm64. 328s Preparing to unpack .../055-libdeflate0_1.19-1_arm64.deb ... 328s Unpacking libdeflate0:arm64 (1.19-1) ... 328s Selecting previously unselected package libgraphite2-3:arm64. 328s Preparing to unpack .../056-libgraphite2-3_1.3.14-2_arm64.deb ... 328s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 328s Selecting previously unselected package libharfbuzz0b:arm64. 328s Preparing to unpack .../057-libharfbuzz0b_8.3.0-2_arm64.deb ... 328s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 328s Selecting previously unselected package x11-common. 328s Preparing to unpack .../058-x11-common_1%3a7.7+23ubuntu2_all.deb ... 328s Unpacking x11-common (1:7.7+23ubuntu2) ... 328s Selecting previously unselected package libice6:arm64. 329s Preparing to unpack .../059-libice6_2%3a1.0.10-1build2_arm64.deb ... 329s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 329s Selecting previously unselected package libicu-dev:arm64. 329s Preparing to unpack .../060-libicu-dev_74.2-1ubuntu1_arm64.deb ... 329s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 329s Selecting previously unselected package libjpeg-turbo8:arm64. 329s Preparing to unpack .../061-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 329s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 329s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 329s Preparing to unpack .../062-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 329s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 329s Selecting previously unselected package libjpeg8:arm64. 329s Preparing to unpack .../063-libjpeg8_8c-2ubuntu11_arm64.deb ... 329s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 329s Selecting previously unselected package libjpeg8-dev:arm64. 329s Preparing to unpack .../064-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 329s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 329s Selecting previously unselected package libjpeg-dev:arm64. 329s Preparing to unpack .../065-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 329s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 329s Selecting previously unselected package liblapack3:arm64. 329s Preparing to unpack .../066-liblapack3_3.12.0-3_arm64.deb ... 329s Unpacking liblapack3:arm64 (3.12.0-3) ... 329s Selecting previously unselected package liblapack-dev:arm64. 329s Preparing to unpack .../067-liblapack-dev_3.12.0-3_arm64.deb ... 329s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 329s Selecting previously unselected package liblerc4:arm64. 330s Preparing to unpack .../068-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 330s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 330s Selecting previously unselected package libncurses-dev:arm64. 330s Preparing to unpack .../069-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 330s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 330s Selecting previously unselected package libthai-data. 330s Preparing to unpack .../070-libthai-data_0.1.29-2_all.deb ... 330s Unpacking libthai-data (0.1.29-2) ... 330s Selecting previously unselected package libthai0:arm64. 330s Preparing to unpack .../071-libthai0_0.1.29-2_arm64.deb ... 330s Unpacking libthai0:arm64 (0.1.29-2) ... 330s Selecting previously unselected package libpango-1.0-0:arm64. 330s Preparing to unpack .../072-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 330s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 330s Selecting previously unselected package libpangoft2-1.0-0:arm64. 330s Preparing to unpack .../073-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 330s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 330s Selecting previously unselected package libpangocairo-1.0-0:arm64. 330s Preparing to unpack .../074-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 330s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 330s Selecting previously unselected package libpaper1:arm64. 330s Preparing to unpack .../075-libpaper1_1.1.29_arm64.deb ... 330s Unpacking libpaper1:arm64 (1.1.29) ... 330s Selecting previously unselected package libpaper-utils. 330s Preparing to unpack .../076-libpaper-utils_1.1.29_arm64.deb ... 330s Unpacking libpaper-utils (1.1.29) ... 330s Selecting previously unselected package libpcre2-16-0:arm64. 330s Preparing to unpack .../077-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 330s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 330s Selecting previously unselected package libpcre2-32-0:arm64. 330s Preparing to unpack .../078-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 330s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 330s Selecting previously unselected package libpcre2-posix3:arm64. 330s Preparing to unpack .../079-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 330s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 330s Selecting previously unselected package libpcre2-dev:arm64. 330s Preparing to unpack .../080-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 330s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 330s Selecting previously unselected package libpkgconf3:arm64. 330s Preparing to unpack .../081-libpkgconf3_1.8.1-2_arm64.deb ... 330s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 330s Selecting previously unselected package zlib1g-dev:arm64. 331s Preparing to unpack .../082-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 331s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 331s Selecting previously unselected package libpng-dev:arm64. 331s Preparing to unpack .../083-libpng-dev_1.6.43-1_arm64.deb ... 331s Unpacking libpng-dev:arm64 (1.6.43-1) ... 331s Selecting previously unselected package libreadline-dev:arm64. 331s Preparing to unpack .../084-libreadline-dev_8.2-3_arm64.deb ... 331s Unpacking libreadline-dev:arm64 (8.2-3) ... 331s Selecting previously unselected package libsharpyuv0:arm64. 331s Preparing to unpack .../085-libsharpyuv0_1.3.2-0.4_arm64.deb ... 331s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 331s Selecting previously unselected package libsm6:arm64. 331s Preparing to unpack .../086-libsm6_2%3a1.2.3-1build2_arm64.deb ... 331s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 331s Selecting previously unselected package libtcl8.6:arm64. 331s Preparing to unpack .../087-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 331s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 331s Selecting previously unselected package libjbig0:arm64. 331s Preparing to unpack .../088-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 331s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 331s Selecting previously unselected package libwebp7:arm64. 331s Preparing to unpack .../089-libwebp7_1.3.2-0.4_arm64.deb ... 331s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 331s Selecting previously unselected package libtiff6:arm64. 331s Preparing to unpack .../090-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 331s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 331s Selecting previously unselected package libxft2:arm64. 331s Preparing to unpack .../091-libxft2_2.3.6-1_arm64.deb ... 331s Unpacking libxft2:arm64 (2.3.6-1) ... 331s Selecting previously unselected package libxss1:arm64. 331s Preparing to unpack .../092-libxss1_1%3a1.2.3-1build2_arm64.deb ... 331s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 331s Selecting previously unselected package libtk8.6:arm64. 331s Preparing to unpack .../093-libtk8.6_8.6.13-2_arm64.deb ... 331s Unpacking libtk8.6:arm64 (8.6.13-2) ... 332s Selecting previously unselected package libxt6:arm64. 332s Preparing to unpack .../094-libxt6_1%3a1.2.1-1.1_arm64.deb ... 332s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 332s Selecting previously unselected package pkgconf-bin. 332s Preparing to unpack .../095-pkgconf-bin_1.8.1-2_arm64.deb ... 332s Unpacking pkgconf-bin (1.8.1-2) ... 332s Selecting previously unselected package pkgconf:arm64. 332s Preparing to unpack .../096-pkgconf_1.8.1-2_arm64.deb ... 332s Unpacking pkgconf:arm64 (1.8.1-2) ... 332s Selecting previously unselected package pkg-config:arm64. 332s Preparing to unpack .../097-pkg-config_1.8.1-2_arm64.deb ... 332s Unpacking pkg-config:arm64 (1.8.1-2) ... 332s Selecting previously unselected package zip. 332s Preparing to unpack .../098-zip_3.0-13_arm64.deb ... 332s Unpacking zip (3.0-13) ... 332s Selecting previously unselected package unzip. 332s Preparing to unpack .../099-unzip_6.0-28ubuntu3_arm64.deb ... 332s Unpacking unzip (6.0-28ubuntu3) ... 332s Selecting previously unselected package xdg-utils. 332s Preparing to unpack .../100-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 332s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 332s Selecting previously unselected package r-base-core. 332s Preparing to unpack .../101-r-base-core_4.3.2-1build1_arm64.deb ... 332s Unpacking r-base-core (4.3.2-1build1) ... 332s Selecting previously unselected package liblzma-dev:arm64. 332s Preparing to unpack .../102-liblzma-dev_5.4.5-0.3_arm64.deb ... 332s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 332s Selecting previously unselected package r-base-dev. 332s Preparing to unpack .../103-r-base-dev_4.3.2-1build1_all.deb ... 332s Unpacking r-base-dev (4.3.2-1build1) ... 332s Selecting previously unselected package pkg-r-autopkgtest. 332s Preparing to unpack .../104-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 332s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 333s Selecting previously unselected package r-bioc-biocgenerics. 333s Preparing to unpack .../105-r-bioc-biocgenerics_0.48.1-2_all.deb ... 333s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 333s Selecting previously unselected package r-bioc-biobase. 333s Preparing to unpack .../106-r-bioc-biobase_2.62.0-1_arm64.deb ... 333s Unpacking r-bioc-biobase (2.62.0-1) ... 333s Selecting previously unselected package r-bioc-zlibbioc. 333s Preparing to unpack .../107-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 333s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 333s Selecting previously unselected package r-bioc-affyio. 333s Preparing to unpack .../108-r-bioc-affyio_1.72.0-1_arm64.deb ... 333s Unpacking r-bioc-affyio (1.72.0-1) ... 333s Selecting previously unselected package r-cran-biocmanager. 333s Preparing to unpack .../109-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 333s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 333s Selecting previously unselected package r-bioc-preprocesscore. 333s Preparing to unpack .../110-r-bioc-preprocesscore_1.64.0+ds-1_arm64.deb ... 333s Unpacking r-bioc-preprocesscore (1.64.0+ds-1) ... 333s Selecting previously unselected package r-bioc-affy. 333s Preparing to unpack .../111-r-bioc-affy_1.80.0-1_arm64.deb ... 333s Unpacking r-bioc-affy (1.80.0-1) ... 333s Selecting previously unselected package autopkgtest-satdep. 333s Preparing to unpack .../112-1-autopkgtest-satdep.deb ... 333s Unpacking autopkgtest-satdep (0) ... 333s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 333s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 333s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 333s Setting up libpaper1:arm64 (1.1.29) ... 334s 334s Creating config file /etc/papersize with new version 334s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 334s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 334s Setting up libdatrie1:arm64 (0.2.13-3) ... 334s Setting up libxcb-render0:arm64 (1.15-1) ... 334s Setting up unzip (6.0-28ubuntu3) ... 334s Setting up x11-common (1:7.7+23ubuntu2) ... 335s Setting up libdeflate0:arm64 (1.19-1) ... 335s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 335s Setting up libxcb-shm0:arm64 (1.15-1) ... 335s Setting up libpaper-utils (1.1.29) ... 335s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 335s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 335s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 335s Setting up zip (3.0-13) ... 335s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 335s Setting up libblas3:arm64 (3.12.0-3) ... 335s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 335s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 335s Setting up libpkgconf3:arm64 (1.8.1-2) ... 335s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 335s Setting up fonts-dejavu-mono (2.37-8) ... 335s Setting up libmpc3:arm64 (1.3.1-1) ... 335s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 335s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 335s Setting up icu-devtools (74.2-1ubuntu1) ... 335s Setting up fonts-dejavu-core (2.37-8) ... 335s Setting up pkgconf-bin (1.8.1-2) ... 335s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 335s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 335s Setting up libwebp7:arm64 (1.3.2-0.4) ... 335s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 335s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 335s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 335s Setting up libnsl-dev:arm64 (1.3.0-3) ... 335s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 335s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 335s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 335s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 335s Setting up libthai-data (0.1.29-2) ... 335s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 335s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 335s Setting up libisl23:arm64 (0.26-3) ... 335s Setting up libc-dev-bin (2.39-0ubuntu2) ... 335s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 335s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 335s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 335s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 335s Setting up libblas-dev:arm64 (3.12.0-3) ... 335s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 335s Setting up dctrl-tools (2.24-3build2) ... 335s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 335s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 335s Setting up libice6:arm64 (2:1.0.10-1build2) ... 335s Setting up liblapack3:arm64 (3.12.0-3) ... 335s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 335s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 335s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 335s Setting up pkgconf:arm64 (1.8.1-2) ... 335s Setting up libthai0:arm64 (0.1.29-2) ... 335s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 335s Setting up liblapack-dev:arm64 (3.12.0-3) ... 335s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 335s Setting up pkg-config:arm64 (1.8.1-2) ... 335s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 335s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 335s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 335s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 335s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 335s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 335s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 335s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 335s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 335s Setting up fontconfig (2.15.0-1ubuntu1) ... 337s Regenerating fonts cache... done. 337s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 337s Setting up libxft2:arm64 (2.3.6-1) ... 337s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 337s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 337s Setting up cpp-13 (13.2.0-17ubuntu2) ... 337s Setting up libtk8.6:arm64 (8.6.13-2) ... 337s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 337s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 337s Setting up libreadline-dev:arm64 (8.2-3) ... 337s Setting up libcairo2:arm64 (1.18.0-1) ... 337s Setting up gcc-13 (13.2.0-17ubuntu2) ... 337s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 337s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 337s Setting up cpp (4:13.2.0-7ubuntu1) ... 337s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 337s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 337s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 337s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 337s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 337s Setting up g++-13 (13.2.0-17ubuntu2) ... 337s Setting up libpng-dev:arm64 (1.6.43-1) ... 337s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 337s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 337s Setting up gcc (4:13.2.0-7ubuntu1) ... 337s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 337s Setting up r-base-core (4.3.2-1build1) ... 337s 337s Creating config file /etc/R/Renviron with new version 337s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 337s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 337s Setting up r-bioc-biocgenerics (0.48.1-2) ... 337s Setting up gfortran (4:13.2.0-7ubuntu1) ... 337s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 337s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 337s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 337s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 337s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 337s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 337s Setting up r-bioc-biobase (2.62.0-1) ... 337s Setting up g++ (4:13.2.0-7ubuntu1) ... 337s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 337s Setting up build-essential (12.10ubuntu1) ... 337s Setting up r-bioc-preprocesscore (1.64.0+ds-1) ... 337s Setting up r-bioc-affyio (1.72.0-1) ... 337s Setting up r-base-dev (4.3.2-1build1) ... 337s Setting up r-bioc-affy (1.80.0-1) ... 337s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 337s Setting up autopkgtest-satdep (0) ... 337s Processing triggers for man-db (2.12.0-3) ... 338s Processing triggers for install-info (7.1-3) ... 339s Processing triggers for libc-bin (2.39-0ubuntu2) ... 344s (Reading database ... 80270 files and directories currently installed.) 344s Removing autopkgtest-satdep (0) ... 345s autopkgtest [17:24:01]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 345s autopkgtest [17:24:01]: test pkg-r-autopkgtest: [----------------------- 346s Test: Try to load the R library affy 349s 349s R version 4.3.2 (2023-10-31) -- "Eye Holes" 349s Copyright (C) 2023 The R Foundation for Statistical Computing 349s Platform: aarch64-unknown-linux-gnu (64-bit) 349s 349s R is free software and comes with ABSOLUTELY NO WARRANTY. 349s You are welcome to redistribute it under certain conditions. 349s Type 'license()' or 'licence()' for distribution details. 349s 349s R is a collaborative project with many contributors. 349s Type 'contributors()' for more information and 349s 'citation()' on how to cite R or R packages in publications. 349s 349s Type 'demo()' for some demos, 'help()' for on-line help, or 349s 'help.start()' for an HTML browser interface to help. 349s Type 'q()' to quit R. 349s 350s > library('affy') 350s Loading required package: BiocGenerics 350s 350s Attaching package: ‘BiocGenerics’ 350s 350s The following objects are masked from ‘package:stats’: 350s 350s IQR, mad, sd, var, xtabs 350s 350s The following objects are masked from ‘package:base’: 350s 350s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 350s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 350s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 350s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 350s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 350s table, tapply, union, unique, unsplit, which.max, which.min 350s 350s Loading required package: Biobase 350s Welcome to Bioconductor 350s 350s Vignettes contain introductory material; view with 350s 'browseVignettes()'. To cite Bioconductor, see 350s 'citation("Biobase")', and for packages 'citation("pkgname")'. 350s 351s > 351s > 351s Other tests are currently unsupported! 351s They will be progressively added. 351s autopkgtest [17:24:07]: test pkg-r-autopkgtest: -----------------------] 352s pkg-r-autopkgtest PASS 352s autopkgtest [17:24:08]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 353s autopkgtest [17:24:09]: @@@@@@@@@@@@@@@@@@@@ summary 353s pkg-r-autopkgtest PASS 363s Creating nova instance adt-noble-arm64-r-bioc-affy-20240316-171816-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...