0s autopkgtest [17:09:15]: starting date and time: 2024-03-24 17:09:15+0000
  0s autopkgtest [17:09:15]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [17:09:15]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tr8rjdu2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python-pysam,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade python-pyvcf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python-pysam/0.22.0+ds-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-arm64-7.secgroup --name adt-noble-arm64-python-pyvcf-20240324-170914-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/
133s autopkgtest [17:11:28]: testbed dpkg architecture: arm64
134s autopkgtest [17:11:29]: testbed apt version: 2.7.12
134s autopkgtest [17:11:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup
134s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
135s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB]
135s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB]
135s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
135s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB]
135s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB]
135s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
135s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB]
135s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
135s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB]
135s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
135s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB]
135s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
138s Fetched 9850 kB in 2s (5833 kB/s)
138s Reading package lists...
140s Reading package lists...
140s Building dependency tree...
140s Reading state information...
141s Calculating upgrade...
141s The following packages will be REMOVED:
141s   libssl3
141s The following NEW packages will be installed:
141s   libssl3t64
141s The following packages have been kept back:
141s   curl
141s The following packages will be upgraded:
141s   openssl
141s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded.
141s Need to get 2777 kB of archives.
141s After this operation, 139 kB of additional disk space will be used.
141s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB]
142s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB]
142s Fetched 2777 kB in 1s (4133 kB/s)
142s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75911 files and directories currently installed.)
142s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ...
142s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ...
142s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
142s  wget depends on libssl3 (>= 3.0.0).
142s  u-boot-tools depends on libssl3 (>= 3.0.0).
142s  tnftp depends on libssl3 (>= 3.0.0).
142s  tcpdump depends on libssl3 (>= 3.0.0).
142s  systemd-resolved depends on libssl3 (>= 3.0.0).
142s  systemd depends on libssl3 (>= 3.0.0).
142s  sudo depends on libssl3 (>= 3.0.0).
142s  sbsigntool depends on libssl3 (>= 3.0.0).
142s  rsync depends on libssl3 (>= 3.0.0).
142s  python3-cryptography depends on libssl3 (>= 3.0.0).
142s  openssh-server depends on libssl3 (>= 3.0.10).
142s  openssh-client depends on libssl3 (>= 3.0.10).
142s  mtd-utils depends on libssl3 (>= 3.0.0).
142s  mokutil depends on libssl3 (>= 3.0.0).
142s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
142s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
142s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
142s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
142s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
142s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
142s  libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0).
142s  libnvme1 depends on libssl3 (>= 3.0.0).
142s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
142s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
142s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
142s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
142s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
143s  kmod depends on libssl3 (>= 3.0.0).
143s  dhcpcd-base depends on libssl3 (>= 3.0.0).
143s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
143s 
143s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75911 files and directories currently installed.)
143s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
143s Selecting previously unselected package libssl3t64:arm64.
143s (Reading database ... 
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(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75900 files and directories currently installed.)
143s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ...
143s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ...
143s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ...
143s Setting up openssl (3.0.13-0ubuntu2) ...
143s Processing triggers for man-db (2.12.0-3) ...
143s Processing triggers for libc-bin (2.39-0ubuntu6) ...
143s Reading package lists...
144s Building dependency tree...
144s Reading state information...
144s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
145s sh: Attempting to set up Debian/Ubuntu apt sources automatically
145s sh: Distribution appears to be Ubuntu
145s Reading package lists...
146s Building dependency tree...
146s Reading state information...
146s eatmydata is already the newest version (131-1).
146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
146s Reading package lists...
146s Building dependency tree...
146s Reading state information...
147s dbus is already the newest version (1.14.10-4ubuntu1).
147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
147s Reading package lists...
147s Building dependency tree...
147s Reading state information...
148s rng-tools-debian is already the newest version (2.4).
148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
148s Reading package lists...
148s Building dependency tree...
148s Reading state information...
148s The following packages will be REMOVED:
148s   cloud-init* python3-configobj* python3-debconf*
149s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
149s After this operation, 3256 kB disk space will be freed.
149s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75913 files and directories currently installed.)
149s Removing cloud-init (24.1.2-0ubuntu1) ...
149s Removing python3-configobj (5.0.8-3) ...
149s Removing python3-debconf (1.5.86) ...
149s Processing triggers for man-db (2.12.0-3) ...
150s (Reading database ... 
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(Reading database ... 60%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75524 files and directories currently installed.)
150s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
150s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
150s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
150s invoke-rc.d: policy-rc.d denied execution of try-restart.
150s Reading package lists...
150s Building dependency tree...
150s Reading state information...
151s linux-generic is already the newest version (6.8.0-11.11+1).
151s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
151s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
151s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
151s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
154s Reading package lists...
154s Reading package lists...
154s Building dependency tree...
154s Reading state information...
154s Calculating upgrade...
155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
155s Reading package lists...
155s Building dependency tree...
155s Reading state information...
155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
156s autopkgtest [17:11:51]: rebooting testbed after setup commands that affected boot
324s autopkgtest [17:14:39]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
327s autopkgtest [17:14:42]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyvcf
329s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-pyvcf 0.6.8+git20170215.476169c-10 (dsc) [2408 B]
329s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-pyvcf 0.6.8+git20170215.476169c-10 (tar) [936 kB]
329s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-pyvcf 0.6.8+git20170215.476169c-10 (diff) [9948 B]
329s gpgv: Signature made Tue Dec  5 15:26:56 2023 UTC
329s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
329s gpgv:                issuer "emollier@emlwks999.eu"
329s gpgv: Can't check signature: No public key
329s dpkg-source: warning: cannot verify inline signature for ./python-pyvcf_0.6.8+git20170215.476169c-10.dsc: no acceptable signature found
329s autopkgtest [17:14:44]: testing package python-pyvcf version 0.6.8+git20170215.476169c-10
330s autopkgtest [17:14:45]: build not needed
330s autopkgtest [17:14:45]: test pybuild-autopkgtest: preparing testbed
334s Reading package lists...
334s Building dependency tree...
334s Reading state information...
335s Starting pkgProblemResolver with broken count: 0
335s Starting 2 pkgProblemResolver with broken count: 0
335s Done
335s The following additional packages will be installed:
335s   autoconf automake autopoint autotools-dev build-essential cpp cpp-13
335s   cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit
335s   dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-13
335s   g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
335s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian
335s   libarchive-zip-perl libasan8 libatomic1 libc-dev-bin libc6-dev libcc1-0
335s   libcrypt-dev libdebhelper-perl libdeflate0 libdw1 libexpat1-dev
335s   libfile-stripnondeterminism-perl libgcc-13-dev libgomp1 libhts3
335s   libhtscodecs2 libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc
335s   libjs-underscore liblsan0 libmpc3 libpython3-all-dev libpython3-dev
335s   libpython3.12 libpython3.12-dev libstdc++-13-dev libsub-override-perl
335s   libtool libtsan2 libubsan1 linux-libc-dev m4 po-debconf
335s   pybuild-plugin-autopkgtest python-pyvcf-examples python3-all python3-all-dev
335s   python3-dev python3-iniconfig python3-packaging python3-pluggy python3-pysam
335s   python3-pytest python3-vcf python3.12-dev pyvcf rpcsvc-proto zlib1g-dev
335s Suggested packages:
335s   autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-13-locales
335s   cpp-13-doc cython-doc dh-make flit python3-build python3-installer
335s   python3-wheel gcc-13-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
335s   gdb-aarch64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev glibc-doc
335s   libstdc++-13-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
335s   libmail-box-perl
335s Recommended packages:
335s   manpages manpages-dev libc-devtools libarchive-cpio-perl javascript-common
335s   libltdl-dev libmail-sendmail-perl
335s The following NEW packages will be installed:
335s   autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential
335s   cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
335s   debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-13
335s   g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
335s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian
335s   libarchive-zip-perl libasan8 libatomic1 libc-dev-bin libc6-dev libcc1-0
335s   libcrypt-dev libdebhelper-perl libdeflate0 libdw1 libexpat1-dev
335s   libfile-stripnondeterminism-perl libgcc-13-dev libgomp1 libhts3
335s   libhtscodecs2 libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc
335s   libjs-underscore liblsan0 libmpc3 libpython3-all-dev libpython3-dev
335s   libpython3.12 libpython3.12-dev libstdc++-13-dev libsub-override-perl
335s   libtool libtsan2 libubsan1 linux-libc-dev m4 po-debconf
335s   pybuild-plugin-autopkgtest python-pyvcf-examples python3-all python3-all-dev
335s   python3-dev python3-iniconfig python3-packaging python3-pluggy python3-pysam
335s   python3-pytest python3-vcf python3.12-dev pyvcf rpcsvc-proto zlib1g-dev
335s 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded.
335s Need to get 88.3 MB/88.3 MB of archives.
335s After this operation, 345 MB of additional disk space will be used.
335s Get:1 /tmp/autopkgtest.9ztjCh/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [812 B]
336s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 m4 arm64 1.4.19-4 [240 kB]
336s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB]
336s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB]
336s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
336s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 autopoint all 0.21-14ubuntu1 [422 kB]
336s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu6 [19.7 kB]
336s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
336s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
336s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
336s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu6 [1596 kB]
336s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
336s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
336s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
337s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
337s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
337s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
337s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
337s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
337s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
337s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
337s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
337s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
337s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
337s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
337s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
337s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
337s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
338s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
338s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
338s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
338s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
338s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
338s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
338s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
338s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
338s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
338s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 cython3 arm64 3.0.8-1ubuntu1 [6240 kB]
338s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libdebhelper-perl all 13.14.1ubuntu1 [89.5 kB]
338s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtool all 2.4.7-7 [166 kB]
338s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dh-autoreconf all 20 [16.1 kB]
338s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB]
338s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-override-perl all 0.10-1 [10.0 kB]
338s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB]
338s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 dh-strip-nondeterminism all 1.13.1-1 [5362 B]
338s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libdw1 arm64 0.190-1 [254 kB]
338s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 debugedit arm64 1:5.0-5 [45.9 kB]
338s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 dwz arm64 0.15-1 [110 kB]
338s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gettext arm64 0.21-14ubuntu1 [846 kB]
338s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
338s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 po-debconf all 1.0.21+nmu1 [233 kB]
338s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 debhelper all 13.14.1ubuntu1 [869 kB]
338s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 dh-python all 6.20231223ubuntu2 [111 kB]
338s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
338s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libexpat1-dev arm64 2.6.0-1 [128 kB]
338s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB]
338s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB]
339s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
339s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
339s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-4 [149 kB]
339s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB]
339s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
339s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-dev arm64 3.12.2-1 [5408 kB]
339s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3-dev arm64 3.12.1-0ubuntu2 [9998 B]
339s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3-all-dev arm64 3.12.1-0ubuntu2 [908 B]
339s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 pybuild-plugin-autopkgtest all 6.20231223ubuntu2 [1760 B]
339s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 python-pyvcf-examples all 0.6.8+git20170215.476169c-10 [935 kB]
339s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B]
339s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12-dev arm64 3.12.2-1 [505 kB]
339s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dev arm64 3.12.1-0ubuntu2 [26.7 kB]
339s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all-dev arm64 3.12.1-0ubuntu2 [906 B]
339s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
339s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB]
339s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB]
339s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pysam arm64 0.22.0+ds-1 [4399 kB]
339s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB]
339s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-vcf arm64 0.6.8+git20170215.476169c-10 [53.8 kB]
339s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 pyvcf all 0.6.8+git20170215.476169c-10 [7740 B]
339s Fetched 88.3 MB in 4s (24.8 MB/s)
339s Selecting previously unselected package m4.
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339s Preparing to unpack .../00-m4_1.4.19-4_arm64.deb ...
339s Unpacking m4 (1.4.19-4) ...
340s Selecting previously unselected package autoconf.
340s Preparing to unpack .../01-autoconf_2.71-3_all.deb ...
340s Unpacking autoconf (2.71-3) ...
340s Selecting previously unselected package autotools-dev.
340s Preparing to unpack .../02-autotools-dev_20220109.1_all.deb ...
340s Unpacking autotools-dev (20220109.1) ...
340s Selecting previously unselected package automake.
340s Preparing to unpack .../03-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
340s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
340s Selecting previously unselected package autopoint.
340s Preparing to unpack .../04-autopoint_0.21-14ubuntu1_all.deb ...
340s Unpacking autopoint (0.21-14ubuntu1) ...
340s Selecting previously unselected package libc-dev-bin.
340s Preparing to unpack .../05-libc-dev-bin_2.39-0ubuntu6_arm64.deb ...
340s Unpacking libc-dev-bin (2.39-0ubuntu6) ...
340s Selecting previously unselected package linux-libc-dev:arm64.
340s Preparing to unpack .../06-linux-libc-dev_6.8.0-11.11_arm64.deb ...
340s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
340s Selecting previously unselected package libcrypt-dev:arm64.
340s Preparing to unpack .../07-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
340s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
340s Selecting previously unselected package rpcsvc-proto.
340s Preparing to unpack .../08-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
340s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
340s Selecting previously unselected package libc6-dev:arm64.
340s Preparing to unpack .../09-libc6-dev_2.39-0ubuntu6_arm64.deb ...
340s Unpacking libc6-dev:arm64 (2.39-0ubuntu6) ...
340s Selecting previously unselected package libisl23:arm64.
340s Preparing to unpack .../10-libisl23_0.26-3_arm64.deb ...
340s Unpacking libisl23:arm64 (0.26-3) ...
340s Selecting previously unselected package libmpc3:arm64.
340s Preparing to unpack .../11-libmpc3_1.3.1-1_arm64.deb ...
340s Unpacking libmpc3:arm64 (1.3.1-1) ...
340s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
340s Preparing to unpack .../12-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
340s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
340s Selecting previously unselected package cpp-13.
340s Preparing to unpack .../13-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
340s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
340s Selecting previously unselected package cpp-aarch64-linux-gnu.
340s Preparing to unpack .../14-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
340s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
340s Selecting previously unselected package cpp.
340s Preparing to unpack .../15-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
340s Unpacking cpp (4:13.2.0-7ubuntu1) ...
340s Selecting previously unselected package libcc1-0:arm64.
340s Preparing to unpack .../16-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
340s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
340s Selecting previously unselected package libgomp1:arm64.
340s Preparing to unpack .../17-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
340s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
340s Selecting previously unselected package libitm1:arm64.
340s Preparing to unpack .../18-libitm1_14-20240303-1ubuntu1_arm64.deb ...
340s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
340s Selecting previously unselected package libatomic1:arm64.
340s Preparing to unpack .../19-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
340s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
340s Selecting previously unselected package libasan8:arm64.
340s Preparing to unpack .../20-libasan8_14-20240303-1ubuntu1_arm64.deb ...
340s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
340s Selecting previously unselected package liblsan0:arm64.
340s Preparing to unpack .../21-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
340s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
341s Selecting previously unselected package libtsan2:arm64.
341s Preparing to unpack .../22-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
341s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
341s Selecting previously unselected package libubsan1:arm64.
341s Preparing to unpack .../23-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
341s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
341s Selecting previously unselected package libhwasan0:arm64.
341s Preparing to unpack .../24-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
341s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
341s Selecting previously unselected package libgcc-13-dev:arm64.
341s Preparing to unpack .../25-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
341s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
341s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
341s Preparing to unpack .../26-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
341s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
341s Selecting previously unselected package gcc-13.
341s Preparing to unpack .../27-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
341s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
341s Selecting previously unselected package gcc-aarch64-linux-gnu.
341s Preparing to unpack .../28-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
341s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
341s Selecting previously unselected package gcc.
341s Preparing to unpack .../29-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
341s Unpacking gcc (4:13.2.0-7ubuntu1) ...
341s Selecting previously unselected package libstdc++-13-dev:arm64.
341s Preparing to unpack .../30-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
341s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
341s Selecting previously unselected package g++-13-aarch64-linux-gnu.
341s Preparing to unpack .../31-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
341s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
342s Selecting previously unselected package g++-13.
342s Preparing to unpack .../32-g++-13_13.2.0-17ubuntu2_arm64.deb ...
342s Unpacking g++-13 (13.2.0-17ubuntu2) ...
342s Selecting previously unselected package g++-aarch64-linux-gnu.
342s Preparing to unpack .../33-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
342s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
342s Selecting previously unselected package g++.
342s Preparing to unpack .../34-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
342s Unpacking g++ (4:13.2.0-7ubuntu1) ...
342s Selecting previously unselected package build-essential.
342s Preparing to unpack .../35-build-essential_12.10ubuntu1_arm64.deb ...
342s Unpacking build-essential (12.10ubuntu1) ...
342s Selecting previously unselected package cython3.
342s Preparing to unpack .../36-cython3_3.0.8-1ubuntu1_arm64.deb ...
342s Unpacking cython3 (3.0.8-1ubuntu1) ...
342s Selecting previously unselected package libdebhelper-perl.
342s Preparing to unpack .../37-libdebhelper-perl_13.14.1ubuntu1_all.deb ...
342s Unpacking libdebhelper-perl (13.14.1ubuntu1) ...
342s Selecting previously unselected package libtool.
342s Preparing to unpack .../38-libtool_2.4.7-7_all.deb ...
342s Unpacking libtool (2.4.7-7) ...
342s Selecting previously unselected package dh-autoreconf.
342s Preparing to unpack .../39-dh-autoreconf_20_all.deb ...
342s Unpacking dh-autoreconf (20) ...
342s Selecting previously unselected package libarchive-zip-perl.
342s Preparing to unpack .../40-libarchive-zip-perl_1.68-1_all.deb ...
342s Unpacking libarchive-zip-perl (1.68-1) ...
342s Selecting previously unselected package libsub-override-perl.
342s Preparing to unpack .../41-libsub-override-perl_0.10-1_all.deb ...
342s Unpacking libsub-override-perl (0.10-1) ...
342s Selecting previously unselected package libfile-stripnondeterminism-perl.
342s Preparing to unpack .../42-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
342s Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
342s Selecting previously unselected package dh-strip-nondeterminism.
342s Preparing to unpack .../43-dh-strip-nondeterminism_1.13.1-1_all.deb ...
342s Unpacking dh-strip-nondeterminism (1.13.1-1) ...
342s Selecting previously unselected package libdw1:arm64.
342s Preparing to unpack .../44-libdw1_0.190-1_arm64.deb ...
342s Unpacking libdw1:arm64 (0.190-1) ...
342s Selecting previously unselected package debugedit.
342s Preparing to unpack .../45-debugedit_1%3a5.0-5_arm64.deb ...
342s Unpacking debugedit (1:5.0-5) ...
342s Selecting previously unselected package dwz.
342s Preparing to unpack .../46-dwz_0.15-1_arm64.deb ...
342s Unpacking dwz (0.15-1) ...
342s Selecting previously unselected package gettext.
342s Preparing to unpack .../47-gettext_0.21-14ubuntu1_arm64.deb ...
342s Unpacking gettext (0.21-14ubuntu1) ...
342s Selecting previously unselected package intltool-debian.
342s Preparing to unpack .../48-intltool-debian_0.35.0+20060710.6_all.deb ...
342s Unpacking intltool-debian (0.35.0+20060710.6) ...
342s Selecting previously unselected package po-debconf.
342s Preparing to unpack .../49-po-debconf_1.0.21+nmu1_all.deb ...
342s Unpacking po-debconf (1.0.21+nmu1) ...
342s Selecting previously unselected package debhelper.
342s Preparing to unpack .../50-debhelper_13.14.1ubuntu1_all.deb ...
342s Unpacking debhelper (13.14.1ubuntu1) ...
342s Selecting previously unselected package dh-python.
342s Preparing to unpack .../51-dh-python_6.20231223ubuntu2_all.deb ...
342s Unpacking dh-python (6.20231223ubuntu2) ...
342s Selecting previously unselected package libdeflate0:arm64.
342s Preparing to unpack .../52-libdeflate0_1.19-1_arm64.deb ...
342s Unpacking libdeflate0:arm64 (1.19-1) ...
343s Selecting previously unselected package libexpat1-dev:arm64.
343s Preparing to unpack .../53-libexpat1-dev_2.6.0-1_arm64.deb ...
343s Unpacking libexpat1-dev:arm64 (2.6.0-1) ...
343s Selecting previously unselected package libhtscodecs2:arm64.
343s Preparing to unpack .../54-libhtscodecs2_1.6.0-1_arm64.deb ...
343s Unpacking libhtscodecs2:arm64 (1.6.0-1) ...
343s Selecting previously unselected package libhts3:arm64.
343s Preparing to unpack .../55-libhts3_1.18+ds-1_arm64.deb ...
343s Unpacking libhts3:arm64 (1.18+ds-1) ...
343s Selecting previously unselected package libjs-jquery.
343s Preparing to unpack .../56-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
343s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
343s Selecting previously unselected package libjs-underscore.
343s Preparing to unpack .../57-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
343s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
343s Selecting previously unselected package libjs-sphinxdoc.
343s Preparing to unpack .../58-libjs-sphinxdoc_7.2.6-4_all.deb ...
343s Unpacking libjs-sphinxdoc (7.2.6-4) ...
343s Selecting previously unselected package libpython3.12:arm64.
343s Preparing to unpack .../59-libpython3.12_3.12.2-1_arm64.deb ...
343s Unpacking libpython3.12:arm64 (3.12.2-1) ...
343s Selecting previously unselected package zlib1g-dev:arm64.
343s Preparing to unpack .../60-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ...
343s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
343s Selecting previously unselected package libpython3.12-dev:arm64.
343s Preparing to unpack .../61-libpython3.12-dev_3.12.2-1_arm64.deb ...
343s Unpacking libpython3.12-dev:arm64 (3.12.2-1) ...
343s Selecting previously unselected package libpython3-dev:arm64.
343s Preparing to unpack .../62-libpython3-dev_3.12.1-0ubuntu2_arm64.deb ...
343s Unpacking libpython3-dev:arm64 (3.12.1-0ubuntu2) ...
343s Selecting previously unselected package libpython3-all-dev:arm64.
343s Preparing to unpack .../63-libpython3-all-dev_3.12.1-0ubuntu2_arm64.deb ...
343s Unpacking libpython3-all-dev:arm64 (3.12.1-0ubuntu2) ...
343s Selecting previously unselected package pybuild-plugin-autopkgtest.
343s Preparing to unpack .../64-pybuild-plugin-autopkgtest_6.20231223ubuntu2_all.deb ...
343s Unpacking pybuild-plugin-autopkgtest (6.20231223ubuntu2) ...
343s Selecting previously unselected package python-pyvcf-examples.
343s Preparing to unpack .../65-python-pyvcf-examples_0.6.8+git20170215.476169c-10_all.deb ...
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343s Selecting previously unselected package python3-all.
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343s Unpacking python3-all (3.12.1-0ubuntu2) ...
343s Selecting previously unselected package python3.12-dev.
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343s Selecting previously unselected package python3-dev.
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343s Selecting previously unselected package python3-all-dev.
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343s Selecting previously unselected package python3-iniconfig.
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343s Selecting previously unselected package python3-packaging.
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343s Unpacking python3-packaging (23.2-1) ...
343s Selecting previously unselected package python3-pluggy.
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343s Selecting previously unselected package python3-pysam.
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343s Unpacking python3-pysam (0.22.0+ds-1) ...
343s Selecting previously unselected package python3-pytest.
343s Preparing to unpack .../74-python3-pytest_7.4.4-1_all.deb ...
343s Unpacking python3-pytest (7.4.4-1) ...
343s Selecting previously unselected package python3-vcf.
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343s Selecting previously unselected package pyvcf.
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344s Selecting previously unselected package autopkgtest-satdep.
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344s Unpacking autopkgtest-satdep (0) ...
344s Setting up libhtscodecs2:arm64 (1.6.0-1) ...
344s Setting up dh-python (6.20231223ubuntu2) ...
344s Setting up python3-iniconfig (1.1.1-2) ...
344s Setting up python-pyvcf-examples (0.6.8+git20170215.476169c-10) ...
344s Setting up libdw1:arm64 (0.190-1) ...
344s Setting up libarchive-zip-perl (1.68-1) ...
344s Setting up libdebhelper-perl (13.14.1ubuntu1) ...
344s Setting up libdeflate0:arm64 (1.19-1) ...
344s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ...
344s Setting up m4 (1.4.19-4) ...
344s Setting up python3-all (3.12.1-0ubuntu2) ...
344s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
344s Setting up autotools-dev (20220109.1) ...
344s Setting up python3-packaging (23.2-1) ...
344s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
344s Setting up libmpc3:arm64 (1.3.1-1) ...
344s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ...
344s Setting up cython3 (3.0.8-1ubuntu1) ...
345s Setting up autopoint (0.21-14ubuntu1) ...
345s Setting up autoconf (2.71-3) ...
345s Setting up python3-pluggy (1.4.0-1) ...
345s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ...
345s Setting up dwz (0.15-1) ...
345s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ...
345s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ...
345s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ...
345s Setting up debugedit (1:5.0-5) ...
345s Setting up libsub-override-perl (0.10-1) ...
345s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ...
345s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
345s Setting up libisl23:arm64 (0.26-3) ...
345s Setting up libc-dev-bin (2.39-0ubuntu6) ...
345s Setting up libpython3.12:arm64 (3.12.2-1) ...
345s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ...
345s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ...
345s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ...
345s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
345s Setting up automake (1:1.16.5-1.3ubuntu1) ...
345s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
345s Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
345s Setting up libhts3:arm64 (1.18+ds-1) ...
345s Setting up gettext (0.21-14ubuntu1) ...
345s Setting up python3-pysam (0.22.0+ds-1) ...
345s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
345s Setting up python3-pytest (7.4.4-1) ...
345s Setting up python3-vcf (0.6.8+git20170215.476169c-10) ...
345s /usr/lib/python3/dist-packages/vcf/parser.py:278: SyntaxWarning: invalid escape sequence '\['
345s   self._alt_pattern = re.compile('[\[\]]')
345s /usr/lib/python3/dist-packages/vcf/parser.py:536: SyntaxWarning: invalid escape sequence '\['
345s   remoteOrientation = (re.search('\[', str) is not None)
345s Setting up intltool-debian (0.35.0+20060710.6) ...
345s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
345s Setting up libjs-sphinxdoc (7.2.6-4) ...
345s Setting up dh-strip-nondeterminism (1.13.1-1) ...
345s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
345s Setting up libc6-dev:arm64 (2.39-0ubuntu6) ...
345s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
345s Setting up cpp-13 (13.2.0-17ubuntu2) ...
345s Setting up pyvcf (0.6.8+git20170215.476169c-10) ...
345s Setting up po-debconf (1.0.21+nmu1) ...
345s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
345s Setting up libexpat1-dev:arm64 (2.6.0-1) ...
345s Setting up gcc-13 (13.2.0-17ubuntu2) ...
345s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
345s Setting up cpp (4:13.2.0-7ubuntu1) ...
345s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
345s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
345s Setting up g++-13 (13.2.0-17ubuntu2) ...
345s Setting up libtool (2.4.7-7) ...
345s Setting up libpython3.12-dev:arm64 (3.12.2-1) ...
345s Setting up gcc (4:13.2.0-7ubuntu1) ...
345s Setting up dh-autoreconf (20) ...
345s Setting up python3.12-dev (3.12.2-1) ...
345s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
345s Setting up libpython3-dev:arm64 (3.12.1-0ubuntu2) ...
345s Setting up debhelper (13.14.1ubuntu1) ...
345s Setting up libpython3-all-dev:arm64 (3.12.1-0ubuntu2) ...
345s Setting up python3-dev (3.12.1-0ubuntu2) ...
345s Setting up g++ (4:13.2.0-7ubuntu1) ...
345s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
345s Setting up build-essential (12.10ubuntu1) ...
345s Setting up python3-all-dev (3.12.1-0ubuntu2) ...
345s Setting up pybuild-plugin-autopkgtest (6.20231223ubuntu2) ...
345s Setting up autopkgtest-satdep (0) ...
345s Processing triggers for man-db (2.12.0-3) ...
346s Processing triggers for install-info (7.1-3) ...
346s Processing triggers for libc-bin (2.39-0ubuntu6) ...
350s (Reading database ... 80781 files and directories currently installed.)
350s Removing autopkgtest-satdep (0) ...
351s autopkgtest [17:15:06]: test pybuild-autopkgtest: pybuild-autopkgtest
351s autopkgtest [17:15:06]: test pybuild-autopkgtest: [-----------------------
351s pybuild-autopkgtest
351s I: pybuild pybuild:310: mkdir /tmp/autopkgtest.9ztjCh/autopkgtest_tmp/build/vcf; cp -r /tmp/autopkgtest.9ztjCh/build.IdX/src/vcf/test /tmp/autopkgtest.9ztjCh/autopkgtest_tmp/build/vcf/
351s I: pybuild base:305: cd /tmp/autopkgtest.9ztjCh/autopkgtest_tmp/build; python3.12 -m pytest 
351s ============================= test session starts ==============================
351s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0
351s rootdir: /tmp/autopkgtest.9ztjCh/autopkgtest_tmp/build
351s collected 104 items
351s 
353s vcf/test/test_vcf.py ................................................... [ 49%]
353s ........................................ss.ss........                    [100%]
353s 
353s ======================== 100 passed, 4 skipped in 2.17s ========================
354s autopkgtest [17:15:09]: test pybuild-autopkgtest: -----------------------]
354s autopkgtest [17:15:09]: test pybuild-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
354s pybuild-autopkgtest  PASS
355s autopkgtest [17:15:10]: @@@@@@@@@@@@@@@@@@@@ summary
355s pybuild-autopkgtest  PASS
372s Creating nova instance adt-noble-arm64-python-pyvcf-20240324-170914-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 2df78aec-1bf7-4c70-8bf1-31fba04b7d21)...