0s autopkgtest [03:41:13]: starting date and time: 2024-03-25 03:41:13+0000 0s autopkgtest [03:41:13]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [03:41:13]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ys7b5qi4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python3-stdlib-extensions,src:gdbm --apt-upgrade python-pauvre --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-stdlib-extensions/3.12.2-3ubuntu1.1 gdbm/1.23-5.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-arm64-8.secgroup --name adt-noble-arm64-python-pauvre-20240325-034113-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 273s autopkgtest [03:45:46]: testbed dpkg architecture: arm64 273s autopkgtest [03:45:46]: testbed apt version: 2.7.12 273s autopkgtest [03:45:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 276s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 279s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 279s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.8 kB] 279s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3997 kB] 281s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 281s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 281s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 281s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 281s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 281s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4366 kB] 283s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 283s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [71.0 kB] 283s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 304s Fetched 9863 kB in 13s (766 kB/s) 305s Reading package lists... 316s Reading package lists... 318s Building dependency tree... 318s Reading state information... 320s Calculating upgrade... 321s The following packages will be REMOVED: 321s libgdbm6 321s The following NEW packages will be installed: 321s libgdbm6t64 321s The following packages will be upgraded: 321s python3-distutils python3-gdbm python3-lib2to3 322s 3 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 322s Need to get 266 kB of archives. 322s After this operation, 3072 B of additional disk space will be used. 322s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-gdbm arm64 3.12.2-3ubuntu1.1 [18.8 kB] 322s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgdbm6t64 arm64 1.23-5.1 [34.3 kB] 322s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-distutils all 3.12.2-3ubuntu1.1 [133 kB] 322s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB] 324s Fetched 266 kB in 1s (480 kB/s) 325s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 325s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_arm64.deb ... 325s Unpacking python3-gdbm:arm64 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 325s dpkg: libgdbm6:arm64: dependency problems, but removing anyway as you requested: 325s man-db depends on libgdbm6 (>= 1.16). 325s libperl5.38:arm64 depends on libgdbm6 (>= 1.21). 325s libgdbm-compat4:arm64 depends on libgdbm6 (>= 1.16). 325s 326s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 326s Removing libgdbm6:arm64 (1.23-5) ... 326s Selecting previously unselected package libgdbm6t64:arm64. 326s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75906 files and directories currently installed.) 326s Preparing to unpack .../libgdbm6t64_1.23-5.1_arm64.deb ... 326s Unpacking libgdbm6t64:arm64 (1.23-5.1) ... 326s Preparing to unpack .../python3-distutils_3.12.2-3ubuntu1.1_all.deb ... 326s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 327s Preparing to unpack .../python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ... 327s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 327s Setting up libgdbm6t64:arm64 (1.23-5.1) ... 327s Setting up python3-gdbm:arm64 (3.12.2-3ubuntu1.1) ... 327s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ... 330s Setting up python3-distutils (3.12.2-3ubuntu1.1) ... 331s python3.12: can't get files for byte-compilation 331s Processing triggers for libc-bin (2.39-0ubuntu6) ... 333s Reading package lists... 335s Building dependency tree... 335s Reading state information... 338s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 341s sh: Attempting to set up Debian/Ubuntu apt sources automatically 341s sh: Distribution appears to be Ubuntu 347s Reading package lists... 349s Building dependency tree... 349s Reading state information... 352s eatmydata is already the newest version (131-1). 352s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 352s Reading package lists... 353s Building dependency tree... 353s Reading state information... 357s dbus is already the newest version (1.14.10-4ubuntu1). 357s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 357s Reading package lists... 359s Building dependency tree... 359s Reading state information... 362s rng-tools-debian is already the newest version (2.4). 362s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 363s Reading package lists... 365s Building dependency tree... 365s Reading state information... 369s The following packages will be REMOVED: 369s cloud-init* python3-configobj* python3-debconf* 371s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 371s After this operation, 3256 kB disk space will be freed. 371s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75912 files and directories currently installed.) 371s Removing cloud-init (24.1.2-0ubuntu1) ... 376s Removing python3-configobj (5.0.8-3) ... 377s Removing python3-debconf (1.5.86) ... 378s Processing triggers for man-db (2.12.0-3) ... 382s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75523 files and directories currently installed.) 382s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 390s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 391s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 391s invoke-rc.d: policy-rc.d denied execution of try-restart. 394s Reading package lists... 394s Building dependency tree... 394s Reading state information... 397s linux-generic is already the newest version (6.8.0-11.11+1). 397s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 398s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 398s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 398s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 422s Reading package lists... 423s Reading package lists... 424s Building dependency tree... 424s Reading state information... 426s Calculating upgrade... 428s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 429s Reading package lists... 431s Building dependency tree... 431s Reading state information... 433s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 434s autopkgtest [03:48:27]: rebooting testbed after setup commands that affected boot 607s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 640s autopkgtest [03:51:53]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 647s autopkgtest [03:52:00]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pauvre 653s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-pauvre 0.2.3-3 (dsc) [2485 B] 653s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-pauvre 0.2.3-3 (tar) [61.9 kB] 653s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-pauvre 0.2.3-3 (diff) [7968 B] 655s gpgv: Signature made Wed Sep 6 20:23:37 2023 UTC 655s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 655s gpgv: issuer "emollier@debian.org" 655s gpgv: Can't check signature: No public key 655s dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-3.dsc: no acceptable signature found 656s autopkgtest [03:52:09]: testing package python-pauvre version 0.2.3-3 656s autopkgtest [03:52:09]: build not needed 657s autopkgtest [03:52:10]: test run-unit-test: preparing testbed 662s Reading package lists... 664s Building dependency tree... 664s Reading state information... 665s Starting pkgProblemResolver with broken count: 0 666s Starting 2 pkgProblemResolver with broken count: 0 666s Done 670s The following additional packages will be installed: 670s blt fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 670s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 670s libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 670s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 670s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 670s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 670s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 670s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-biopython 670s python3-brotli python3-cairo python3-contourpy python3-cycler 670s python3-dateutil python3-decorator python3-fonttools python3-freetype 670s python3-fs python3-joblib python3-kiwisolver python3-lxml python3-lz4 670s python3-matplotlib python3-mpmath python3-nanoget-examples python3-numpy 670s python3-packaging python3-pandas python3-pandas-lib python3-pauvre 670s python3-pil python3-pil.imagetk python3-reportlab python3-rlpycairo 670s python3-scipy python3-sklearn python3-sklearn-lib python3-sympy 670s python3-threadpoolctl python3-tk python3-ufolib2 python3-unicodedata2 670s sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings 670s xfonts-utils xml-core 670s Suggested packages: 670s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 670s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 670s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 670s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 670s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 670s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 670s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 670s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 670s texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran python3-dev 670s python3-pytest python-pandas-doc python3-statsmodels python-pil-doc 670s pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel 670s rl-renderpm python-scipy-doc python3-dap python-sklearn-doc 670s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg sgml-base-doc 670s debhelper 670s Recommended packages: 670s javascript-common python-biopython-doc ncbi-blast+ python3-pytest 670s python3-simplejson python3-psutil python3-bs4 python3-cssselect 670s python3-html5lib python3-bottleneck python3-numexpr python3-odf 670s python3-openpyxl python3-tables python3-olefile g++ | c++-compiler 670s isympy-common 670s The following NEW packages will be installed: 670s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core 670s fonts-dejavu-extra fonts-dejavu-mono fonts-lyx fonts-urw-base35 libblas3 670s libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 libgomp1 670s libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 670s libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 670s libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 670s libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 670s libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 670s python3-appdirs python3-biopython python3-brotli python3-cairo 670s python3-contourpy python3-cycler python3-dateutil python3-decorator 670s python3-fonttools python3-freetype python3-fs python3-joblib 670s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 670s python3-mpmath python3-nanoget-examples python3-numpy python3-packaging 670s python3-pandas python3-pandas-lib python3-pauvre python3-pil 670s python3-pil.imagetk python3-reportlab python3-rlpycairo python3-scipy 670s python3-sklearn python3-sklearn-lib python3-sympy python3-threadpoolctl 670s python3-tk python3-ufolib2 python3-unicodedata2 sgml-base tk8.6-blt2.5 670s unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 671s 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. 671s Need to get 125 MB/125 MB of archives. 671s After this operation, 481 MB of additional disk space will be used. 671s Get:1 /tmp/autopkgtest.KF3Eiv/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 671s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 sgml-base all 1.31 [11.4 kB] 671s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 672s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 672s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 672s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libfontenc1 arm64 1:1.1.8-1 [13.9 kB] 672s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 672s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 672s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-utils arm64 1:7.7+6build2 [93.6 kB] 672s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 673s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 673s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 673s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 673s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 673s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 673s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB] 673s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [618 kB] 673s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 blt arm64 2.5.3+dfsg-7 [4826 B] 673s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-extra all 2.37-8 [1947 kB] 673s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lyx all 2.4.0~RC3-1 [170 kB] 673s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 673s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 673s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 673s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 673s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 674s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 674s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 674s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 674s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 674s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 674s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libimagequant0 arm64 2.18.0-1 [37.0 kB] 674s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 674s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 674s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 674s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 674s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 674s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB] 674s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 674s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 674s Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB] 674s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1 [14.4 kB] 674s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 674s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 675s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 675s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 675s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB] 675s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB] 675s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libxslt1.1 arm64 1.1.39-0exp1 [166 kB] 675s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 675s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 675s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 676s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 python3-tk arm64 3.11.5-1 [112 kB] 676s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pil.imagetk arm64 10.2.0-1 [9708 B] 676s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 676s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pil arm64 10.2.0-1 [477 kB] 676s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 python3-cairo arm64 1.25.1-2 [153 kB] 676s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-freetype all 2.4.0-1 [83.1 kB] 676s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 676s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-reportlab all 4.1.0-1 [683 kB] 676s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 xml-core all 0.19 [20.3 kB] 676s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 676s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-biopython arm64 1.81+dfsg-3 [1664 kB] 676s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-brotli arm64 1.1.0-2 [345 kB] 676s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-contourpy arm64 1.0.7-1build2 [244 kB] 676s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cycler all 0.11.0-2 [8202 B] 676s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB] 676s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 676s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6 [18.6 MB] 678s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 678s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mpmath all 1.2.1-3 [421 kB] 678s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sympy all 1.12-7 [3966 kB] 678s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fs all 2.4.16-3 [91.1 kB] 678s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lxml arm64 5.1.0-1 [2042 kB] 679s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build2 [28.4 kB] 679s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1 [362 kB] 679s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 681s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fonttools arm64 4.46.0-1 [1625 kB] 681s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-joblib all 1.3.2-1 [207 kB] 681s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-kiwisolver arm64 1.4.4-2 [48.5 kB] 681s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 681s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-matplotlib arm64 3.6.3-1ubuntu3 [7291 kB] 682s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-nanoget-examples all 1.19.3-1 [26.2 MB] 684s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-4ubuntu2 [7669 kB] 685s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 686s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 686s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sklearn-lib arm64 1.4.1.post1+dfsg-1 [6663 kB] 686s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sklearn all 1.4.1.post1+dfsg-1 [2261 kB] 686s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pauvre all 0.2.3-3 [52.6 kB] 690s Fetched 125 MB in 16s (7973 kB/s) 690s Selecting previously unselected package sgml-base. 691s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75468 files and directories currently installed.) 691s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 691s Unpacking sgml-base (1.31) ... 691s Selecting previously unselected package libtcl8.6:arm64. 692s Preparing to unpack .../01-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 692s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 692s Selecting previously unselected package fonts-dejavu-mono. 692s Preparing to unpack .../02-fonts-dejavu-mono_2.37-8_all.deb ... 692s Unpacking fonts-dejavu-mono (2.37-8) ... 692s Selecting previously unselected package fonts-dejavu-core. 692s Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ... 692s Unpacking fonts-dejavu-core (2.37-8) ... 693s Selecting previously unselected package libfontenc1:arm64. 693s Preparing to unpack .../04-libfontenc1_1%3a1.1.8-1_arm64.deb ... 693s Unpacking libfontenc1:arm64 (1:1.1.8-1) ... 693s Selecting previously unselected package x11-common. 693s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu2_all.deb ... 693s Unpacking x11-common (1:7.7+23ubuntu2) ... 693s Selecting previously unselected package xfonts-encodings. 694s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 694s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 694s Selecting previously unselected package xfonts-utils. 694s Preparing to unpack .../07-xfonts-utils_1%3a7.7+6build2_arm64.deb ... 694s Unpacking xfonts-utils (1:7.7+6build2) ... 694s Selecting previously unselected package fonts-urw-base35. 694s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ... 695s Unpacking fonts-urw-base35 (20200910-8) ... 697s Selecting previously unselected package fontconfig-config. 697s Preparing to unpack .../09-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 698s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 699s Selecting previously unselected package libfontconfig1:arm64. 699s Preparing to unpack .../10-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 699s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 699s Selecting previously unselected package libxrender1:arm64. 699s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 699s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 699s Selecting previously unselected package libxft2:arm64. 699s Preparing to unpack .../12-libxft2_2.3.6-1_arm64.deb ... 699s Unpacking libxft2:arm64 (2.3.6-1) ... 699s Selecting previously unselected package libxss1:arm64. 699s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build2_arm64.deb ... 699s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 699s Selecting previously unselected package libtk8.6:arm64. 699s Preparing to unpack .../14-libtk8.6_8.6.14-1_arm64.deb ... 699s Unpacking libtk8.6:arm64 (8.6.14-1) ... 700s Selecting previously unselected package tk8.6-blt2.5. 700s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-7_arm64.deb ... 700s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 700s Selecting previously unselected package blt. 700s Preparing to unpack .../16-blt_2.5.3+dfsg-7_arm64.deb ... 700s Unpacking blt (2.5.3+dfsg-7) ... 700s Selecting previously unselected package fonts-dejavu-extra. 700s Preparing to unpack .../17-fonts-dejavu-extra_2.37-8_all.deb ... 700s Unpacking fonts-dejavu-extra (2.37-8) ... 700s Selecting previously unselected package fonts-lyx. 700s Preparing to unpack .../18-fonts-lyx_2.4.0~RC3-1_all.deb ... 700s Unpacking fonts-lyx (2.4.0~RC3-1) ... 701s Selecting previously unselected package libblas3:arm64. 701s Preparing to unpack .../19-libblas3_3.12.0-3_arm64.deb ... 701s Unpacking libblas3:arm64 (3.12.0-3) ... 702s Selecting previously unselected package libpixman-1-0:arm64. 702s Preparing to unpack .../20-libpixman-1-0_0.42.2-1_arm64.deb ... 702s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 702s Selecting previously unselected package libxcb-render0:arm64. 702s Preparing to unpack .../21-libxcb-render0_1.15-1_arm64.deb ... 702s Unpacking libxcb-render0:arm64 (1.15-1) ... 702s Selecting previously unselected package libxcb-shm0:arm64. 702s Preparing to unpack .../22-libxcb-shm0_1.15-1_arm64.deb ... 702s Unpacking libxcb-shm0:arm64 (1.15-1) ... 702s Selecting previously unselected package libcairo2:arm64. 702s Preparing to unpack .../23-libcairo2_1.18.0-1_arm64.deb ... 702s Unpacking libcairo2:arm64 (1.18.0-1) ... 702s Selecting previously unselected package libdeflate0:arm64. 702s Preparing to unpack .../24-libdeflate0_1.19-1_arm64.deb ... 702s Unpacking libdeflate0:arm64 (1.19-1) ... 702s Selecting previously unselected package libgfortran5:arm64. 702s Preparing to unpack .../25-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 702s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 702s Selecting previously unselected package libgomp1:arm64. 702s Preparing to unpack .../26-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 702s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 702s Selecting previously unselected package libgraphite2-3:arm64. 702s Preparing to unpack .../27-libgraphite2-3_1.3.14-2_arm64.deb ... 702s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 702s Selecting previously unselected package libharfbuzz0b:arm64. 702s Preparing to unpack .../28-libharfbuzz0b_8.3.0-2_arm64.deb ... 702s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 702s Selecting previously unselected package libimagequant0:arm64. 702s Preparing to unpack .../29-libimagequant0_2.18.0-1_arm64.deb ... 702s Unpacking libimagequant0:arm64 (2.18.0-1) ... 702s Selecting previously unselected package libjpeg-turbo8:arm64. 702s Preparing to unpack .../30-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 702s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 703s Selecting previously unselected package libjpeg8:arm64. 703s Preparing to unpack .../31-libjpeg8_8c-2ubuntu11_arm64.deb ... 703s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 703s Selecting previously unselected package libjs-jquery. 703s Preparing to unpack .../32-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 703s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 703s Selecting previously unselected package libjs-jquery-ui. 703s Preparing to unpack .../33-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 703s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 704s Selecting previously unselected package liblapack3:arm64. 704s Preparing to unpack .../34-liblapack3_3.12.0-3_arm64.deb ... 704s Unpacking liblapack3:arm64 (3.12.0-3) ... 705s Selecting previously unselected package liblbfgsb0:arm64. 705s Preparing to unpack .../35-liblbfgsb0_3.0+dfsg.4-1_arm64.deb ... 705s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1) ... 705s Selecting previously unselected package liblcms2-2:arm64. 705s Preparing to unpack .../36-liblcms2-2_2.14-2_arm64.deb ... 705s Unpacking liblcms2-2:arm64 (2.14-2) ... 705s Selecting previously unselected package liblerc4:arm64. 705s Preparing to unpack .../37-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 705s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 705s Selecting previously unselected package libqhull-r8.0:arm64. 705s Preparing to unpack .../38-libqhull-r8.0_2020.2-6_arm64.deb ... 705s Unpacking libqhull-r8.0:arm64 (2020.2-6) ... 705s Selecting previously unselected package libraqm0:arm64. 705s Preparing to unpack .../39-libraqm0_0.10.1-1_arm64.deb ... 705s Unpacking libraqm0:arm64 (0.10.1-1) ... 705s Selecting previously unselected package libsharpyuv0:arm64. 706s Preparing to unpack .../40-libsharpyuv0_1.3.2-0.4_arm64.deb ... 706s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 706s Selecting previously unselected package libjbig0:arm64. 706s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 706s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 706s Selecting previously unselected package libwebp7:arm64. 706s Preparing to unpack .../42-libwebp7_1.3.2-0.4_arm64.deb ... 706s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 706s Selecting previously unselected package libtiff6:arm64. 706s Preparing to unpack .../43-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 706s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 706s Selecting previously unselected package libwebpdemux2:arm64. 706s Preparing to unpack .../44-libwebpdemux2_1.3.2-0.4_arm64.deb ... 706s Unpacking libwebpdemux2:arm64 (1.3.2-0.4) ... 706s Selecting previously unselected package libwebpmux3:arm64. 706s Preparing to unpack .../45-libwebpmux3_1.3.2-0.4_arm64.deb ... 706s Unpacking libwebpmux3:arm64 (1.3.2-0.4) ... 706s Selecting previously unselected package libxslt1.1:arm64. 707s Preparing to unpack .../46-libxslt1.1_1.1.39-0exp1_arm64.deb ... 707s Unpacking libxslt1.1:arm64 (1.1.39-0exp1) ... 707s Selecting previously unselected package python-matplotlib-data. 707s Preparing to unpack .../47-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 707s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 709s Selecting previously unselected package python3-appdirs. 709s Preparing to unpack .../48-python3-appdirs_1.4.4-4_all.deb ... 709s Unpacking python3-appdirs (1.4.4-4) ... 710s Selecting previously unselected package python3-numpy. 710s Preparing to unpack .../49-python3-numpy_1%3a1.24.2-2_arm64.deb ... 710s Unpacking python3-numpy (1:1.24.2-2) ... 714s Selecting previously unselected package python3-tk:arm64. 714s Preparing to unpack .../50-python3-tk_3.11.5-1_arm64.deb ... 714s Unpacking python3-tk:arm64 (3.11.5-1) ... 714s Selecting previously unselected package python3-pil.imagetk:arm64. 714s Preparing to unpack .../51-python3-pil.imagetk_10.2.0-1_arm64.deb ... 714s Unpacking python3-pil.imagetk:arm64 (10.2.0-1) ... 714s Selecting previously unselected package libopenjp2-7:arm64. 714s Preparing to unpack .../52-libopenjp2-7_2.5.0-2_arm64.deb ... 714s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 714s Selecting previously unselected package python3-pil:arm64. 714s Preparing to unpack .../53-python3-pil_10.2.0-1_arm64.deb ... 714s Unpacking python3-pil:arm64 (10.2.0-1) ... 715s Selecting previously unselected package python3-cairo. 715s Preparing to unpack .../54-python3-cairo_1.25.1-2_arm64.deb ... 715s Unpacking python3-cairo (1.25.1-2) ... 715s Selecting previously unselected package python3-freetype. 715s Preparing to unpack .../55-python3-freetype_2.4.0-1_all.deb ... 715s Unpacking python3-freetype (2.4.0-1) ... 716s Selecting previously unselected package python3-rlpycairo. 716s Preparing to unpack .../56-python3-rlpycairo_0.3.0-3_all.deb ... 716s Unpacking python3-rlpycairo (0.3.0-3) ... 716s Selecting previously unselected package python3-reportlab. 716s Preparing to unpack .../57-python3-reportlab_4.1.0-1_all.deb ... 716s Unpacking python3-reportlab (4.1.0-1) ... 717s Selecting previously unselected package xml-core. 717s Preparing to unpack .../58-xml-core_0.19_all.deb ... 717s Unpacking xml-core (0.19) ... 717s Selecting previously unselected package w3c-sgml-lib. 717s Preparing to unpack .../59-w3c-sgml-lib_1.3-3_all.deb ... 717s Unpacking w3c-sgml-lib (1.3-3) ... 719s Selecting previously unselected package python3-biopython. 719s Preparing to unpack .../60-python3-biopython_1.81+dfsg-3_arm64.deb ... 719s Unpacking python3-biopython (1.81+dfsg-3) ... 722s Selecting previously unselected package python3-brotli. 722s Preparing to unpack .../61-python3-brotli_1.1.0-2_arm64.deb ... 722s Unpacking python3-brotli (1.1.0-2) ... 722s Selecting previously unselected package python3-contourpy. 722s Preparing to unpack .../62-python3-contourpy_1.0.7-1build2_arm64.deb ... 722s Unpacking python3-contourpy (1.0.7-1build2) ... 723s Selecting previously unselected package python3-cycler. 723s Preparing to unpack .../63-python3-cycler_0.11.0-2_all.deb ... 723s Unpacking python3-cycler (0.11.0-2) ... 723s Selecting previously unselected package python3-dateutil. 723s Preparing to unpack .../64-python3-dateutil_2.8.2-3_all.deb ... 723s Unpacking python3-dateutil (2.8.2-3) ... 723s Selecting previously unselected package python3-decorator. 723s Preparing to unpack .../65-python3-decorator_5.1.1-5_all.deb ... 723s Unpacking python3-decorator (5.1.1-5) ... 724s Selecting previously unselected package python3-scipy. 724s Preparing to unpack .../66-python3-scipy_1.11.4-6_arm64.deb ... 724s Unpacking python3-scipy (1.11.4-6) ... 733s Selecting previously unselected package python3-ufolib2. 733s Preparing to unpack .../67-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 733s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 733s Selecting previously unselected package python3-mpmath. 733s Preparing to unpack .../68-python3-mpmath_1.2.1-3_all.deb ... 733s Unpacking python3-mpmath (1.2.1-3) ... 733s Selecting previously unselected package python3-sympy. 733s Preparing to unpack .../69-python3-sympy_1.12-7_all.deb ... 733s Unpacking python3-sympy (1.12-7) ... 739s Selecting previously unselected package python3-fs. 739s Preparing to unpack .../70-python3-fs_2.4.16-3_all.deb ... 739s Unpacking python3-fs (2.4.16-3) ... 740s Selecting previously unselected package python3-lxml:arm64. 740s Preparing to unpack .../71-python3-lxml_5.1.0-1_arm64.deb ... 740s Unpacking python3-lxml:arm64 (5.1.0-1) ... 740s Selecting previously unselected package python3-lz4. 740s Preparing to unpack .../72-python3-lz4_4.0.2+dfsg-1build2_arm64.deb ... 740s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 741s Selecting previously unselected package python3-unicodedata2. 741s Preparing to unpack .../73-python3-unicodedata2_15.1.0+ds-1_arm64.deb ... 741s Unpacking python3-unicodedata2 (15.1.0+ds-1) ... 741s Selecting previously unselected package unicode-data. 741s Preparing to unpack .../74-unicode-data_15.1.0-1_all.deb ... 741s Unpacking unicode-data (15.1.0-1) ... 744s Selecting previously unselected package python3-fonttools. 744s Preparing to unpack .../75-python3-fonttools_4.46.0-1_arm64.deb ... 744s Unpacking python3-fonttools (4.46.0-1) ... 745s Selecting previously unselected package python3-joblib. 745s Preparing to unpack .../76-python3-joblib_1.3.2-1_all.deb ... 745s Unpacking python3-joblib (1.3.2-1) ... 746s Selecting previously unselected package python3-kiwisolver. 746s Preparing to unpack .../77-python3-kiwisolver_1.4.4-2_arm64.deb ... 746s Unpacking python3-kiwisolver (1.4.4-2) ... 746s Selecting previously unselected package python3-packaging. 746s Preparing to unpack .../78-python3-packaging_23.2-1_all.deb ... 746s Unpacking python3-packaging (23.2-1) ... 746s Selecting previously unselected package python3-matplotlib. 746s Preparing to unpack .../79-python3-matplotlib_3.6.3-1ubuntu3_arm64.deb ... 746s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... 748s Selecting previously unselected package python3-nanoget-examples. 748s Preparing to unpack .../80-python3-nanoget-examples_1.19.3-1_all.deb ... 748s Unpacking python3-nanoget-examples (1.19.3-1) ... 752s Selecting previously unselected package python3-pandas-lib:arm64. 752s Preparing to unpack .../81-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_arm64.deb ... 752s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ... 756s Selecting previously unselected package python3-pandas. 756s Preparing to unpack .../82-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 756s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 760s Selecting previously unselected package python3-threadpoolctl. 760s Preparing to unpack .../83-python3-threadpoolctl_3.1.0-1_all.deb ... 760s Unpacking python3-threadpoolctl (3.1.0-1) ... 760s Selecting previously unselected package python3-sklearn-lib:arm64. 760s Preparing to unpack .../84-python3-sklearn-lib_1.4.1.post1+dfsg-1_arm64.deb ... 760s Unpacking python3-sklearn-lib:arm64 (1.4.1.post1+dfsg-1) ... 763s Selecting previously unselected package python3-sklearn. 763s Preparing to unpack .../85-python3-sklearn_1.4.1.post1+dfsg-1_all.deb ... 763s Unpacking python3-sklearn (1.4.1.post1+dfsg-1) ... 765s Selecting previously unselected package python3-pauvre. 765s Preparing to unpack .../86-python3-pauvre_0.2.3-3_all.deb ... 765s Unpacking python3-pauvre (0.2.3-3) ... 765s Selecting previously unselected package autopkgtest-satdep. 765s Preparing to unpack .../87-1-autopkgtest-satdep.deb ... 765s Unpacking autopkgtest-satdep (0) ... 766s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 766s Setting up liblcms2-2:arm64 (2.14-2) ... 766s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 766s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 766s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 766s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 766s Setting up python3-joblib (1.3.2-1) ... 768s Setting up python3-lz4 (4.0.2+dfsg-1build2) ... 771s Setting up libxcb-render0:arm64 (1.15-1) ... 771s Setting up python3-unicodedata2 (15.1.0+ds-1) ... 771s Setting up fonts-lyx (2.4.0~RC3-1) ... 771s Setting up python3-threadpoolctl (3.1.0-1) ... 772s Setting up x11-common (1:7.7+23ubuntu2) ... 775s Setting up libdeflate0:arm64 (1.19-1) ... 775s Setting up libqhull-r8.0:arm64 (2020.2-6) ... 775s Setting up libxcb-shm0:arm64 (1.15-1) ... 775s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 775s Setting up python3-freetype (2.4.0-1) ... 778s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 778s Setting up unicode-data (15.1.0-1) ... 778s Setting up python3-decorator (5.1.1-5) ... 780s Setting up libfontenc1:arm64 (1:1.1.8-1) ... 780s Setting up libblas3:arm64 (3.12.0-3) ... 780s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 780s Setting up python3-packaging (23.2-1) ... 783s Setting up python3-brotli (1.1.0-2) ... 783s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 783s Setting up python3-cycler (0.11.0-2) ... 784s Setting up libimagequant0:arm64 (2.18.0-1) ... 784s Setting up fonts-dejavu-mono (2.37-8) ... 784s Setting up python3-kiwisolver (1.4.4-2) ... 785s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 785s Setting up fonts-dejavu-core (2.37-8) ... 786s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 786s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 786s Setting up libwebp7:arm64 (1.3.2-0.4) ... 786s Setting up fonts-dejavu-extra (2.37-8) ... 786s Setting up libxslt1.1:arm64 (1.1.39-0exp1) ... 786s Setting up python3-nanoget-examples (1.19.3-1) ... 786s Setting up libopenjp2-7:arm64 (2.5.0-2) ... 786s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 786s Setting up python3-dateutil (2.8.2-3) ... 788s Setting up sgml-base (1.31) ... 788s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 788s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 788s Setting up python3-mpmath (1.2.1-3) ... 792s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ... 792s Setting up libwebpmux3:arm64 (1.3.2-0.4) ... 792s Setting up python3-appdirs (1.4.4-4) ... 794s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 794s Setting up python3-sympy (1.12-7) ... 839s Setting up liblapack3:arm64 (3.12.0-3) ... 839s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 839s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 840s Setting up libwebpdemux2:arm64 (1.3.2-0.4) ... 840s Setting up xfonts-utils (1:7.7+6build2) ... 840s Setting up python3-fs (2.4.16-3) ... 842s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 842s Setting up libraqm0:arm64 (0.10.1-1) ... 842s Setting up python3-numpy (1:1.24.2-2) ... 857s Setting up python3-lxml:arm64 (5.1.0-1) ... 858s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 858s Setting up xml-core (0.19) ... 859s Setting up python3-contourpy (1.0.7-1build2) ... 860s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 860s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ... 860s Setting up libxft2:arm64 (2.3.6-1) ... 860s Setting up python3-scipy (1.11.4-6) ... 878s Setting up libtk8.6:arm64 (8.6.14-1) ... 878s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ... 878s Setting up python3-sklearn-lib:arm64 (1.4.1.post1+dfsg-1) ... 878s Setting up fonts-urw-base35 (20200910-8) ... 879s Setting up libcairo2:arm64 (1.18.0-1) ... 879s Setting up python3-pil:arm64 (10.2.0-1) ... 881s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 909s Setting up python3-sklearn (1.4.1.post1+dfsg-1) ... 921s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... 921s Setting up python3-cairo (1.25.1-2) ... 922s Setting up blt (2.5.3+dfsg-7) ... 922s Setting up python3-tk:arm64 (3.11.5-1) ... 923s Setting up python3-pil.imagetk:arm64 (10.2.0-1) ... 924s Setting up python3-rlpycairo (0.3.0-3) ... 925s Setting up python3-reportlab (4.1.0-1) ... 929s Setting up python3-fonttools (4.46.0-1) ... 937s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 938s Setting up python3-matplotlib (3.6.3-1ubuntu3) ... 946s Processing triggers for libc-bin (2.39-0ubuntu6) ... 946s Processing triggers for man-db (2.12.0-3) ... 951s Processing triggers for sgml-base (1.31) ... 951s Setting up w3c-sgml-lib (1.3-3) ... 1150s Setting up python3-biopython (1.81+dfsg-3) ... 1159s Setting up python3-pauvre (0.2.3-3) ... 1160s /usr/lib/python3/dist-packages/pauvre/gfftools.py:178: SyntaxWarning: invalid escape sequence '\ ' 1160s """ plots a lff patch 1160s /usr/lib/python3/dist-packages/pauvre/gfftools.py:259: SyntaxWarning: invalid escape sequence '\ ' 1160s """ plots a rff patch 1161s /usr/lib/python3/dist-packages/pauvre/synplot.py:531: SyntaxWarning: invalid escape sequence '\i' 1161s seq_name = "$\it{{{0}}}$".format(gff.species) 1161s Setting up autopkgtest-satdep (0) ... 1181s (Reading database ... 87181 files and directories currently installed.) 1181s Removing autopkgtest-satdep (0) ... 1183s autopkgtest [04:00:56]: test run-unit-test: [----------------------- 1185s 1185s #git clone https://github.com/wdecoster/nanotest.git 1185s 1185s pauvre -h 1186s usage: pauvre [-h] [-v] 1186s {browser,custommargin,marginplot,redwood,stats,synplot} ... 1186s 1186s options: 1186s -h, --help show this help message and exit 1186s -v, --version Installed pauvre version 1186s 1186s [sub-commands]: 1186s {browser,custommargin,marginplot,redwood,stats,synplot} 1186s browser an adaptable genome browser with various track types 1186s custommargin plot custom marginal histograms of tab-delimited files 1186s marginplot plot a marginal histogram of a fastq file 1186s redwood make a redwood plot from a bam file 1186s stats outputs stats from a fastq file 1186s synplot make a synteny plot from a gff file, protein 1186s alignment, and partition file 1186s 1186s pauvre marginplot -h 1187s usage: pauvre marginplot [-h] [-q] [--dpi dpi] [-f FASTQ] 1187s [--fileform STRING [STRING ...]] 1187s [--filt_maxlen FILT_MAXLEN] 1187s [--filt_maxqual FILT_MAXQUAL] 1187s [--filt_minlen FILT_MINLEN] 1187s [--filt_minqual FILT_MINQUAL] [--kmerdf KMERDF] [-n] 1187s [--no_timestamp] [-o BASENAME] 1187s [--plot_maxlen PLOT_MAXLEN] 1187s [--plot_maxqual PLOT_MAXQUAL] 1187s [--plot_minlen PLOT_MINLEN] 1187s [--plot_minqual PLOT_MINQUAL] [--lengthbin LENGTHBIN] 1187s [--qualbin QUALBIN] [-t TITLE] [-y] 1187s 1187s options: 1187s -h, --help show this help message and exit 1187s -q, --quiet Do not output warnings to stderr 1187s --dpi dpi Change the dpi from the default 600 if you need it 1187s higher 1187s -f FASTQ, --fastq FASTQ 1187s The input FASTQ file. 1187s --fileform STRING [STRING ...] 1187s Which output format would you like? Def.=png 1187s --filt_maxlen FILT_MAXLEN 1187s This sets the max read length filter reads. 1187s --filt_maxqual FILT_MAXQUAL 1187s This sets the max mean read quality to filter reads. 1187s --filt_minlen FILT_MINLEN 1187s This sets the min read length to filter reads. 1187s --filt_minqual FILT_MINQUAL 1187s This sets the min mean read quality to filter reads. 1187s --kmerdf KMERDF Pass the filename of a data matrix if you would like 1187s to plot read length versus number of kmers in that 1187s read. The data matrix is a tab-separated text file 1187s with columns "id length numks and kmers", where: 1187s = read id = the length of the read = 1187s the number of canonical kmers in the read = a 1187s list representation of kmers ie ['GAT', 'GTA'] 1187s -n, --no_transparent Specify this option if you don't want a transparent 1187s background. Default is on. 1187s --no_timestamp Turn off time stamps in the filename output. 1187s -o BASENAME, --output_base_name BASENAME 1187s Specify a base name for the output file(s). The input 1187s file base name is the default. 1187s --plot_maxlen PLOT_MAXLEN 1187s Sets the maximum viewing area in the length dimension. 1187s --plot_maxqual PLOT_MAXQUAL 1187s Sets the maximum viewing area in the quality 1187s dimension. 1187s --plot_minlen PLOT_MINLEN 1187s Sets the minimum viewing area in the length dimension. 1187s --plot_minqual PLOT_MINQUAL 1187s Sets the minimum viewing area in the quality 1187s dimension. 1187s --lengthbin LENGTHBIN 1187s This sets the bin size to use for length. 1187s --qualbin QUALBIN This sets the bin size to use for quality 1187s -t TITLE, --title TITLE 1187s This sets the title for the whole plot. Use --title 1187s "Crustacean's DNA read quality" if you need single 1187s quote or apostrophe inside title. 1187s -y, --add-yaxes Add Y-axes to both marginal histograms. 1187s pauvre marginplot -f nanotest/reads.fastq.gz 1203s Keeping reads that satisfy: length >= 0 and meanQual >= 0 1207s # Fastq stats for reads.fastq.gz, reads >= 0bp 1207s numReads: 371 1207s %totalNumReads: 100.00 1207s numBasepairs: 8611871 1207s %totalBasepairs: 100.00 1207s meanLen: 23212.590296495957 1207s medianLen: 9390.0 1207s minLen: 212 1207s maxLen: 393431 1207s N50: 60395 1207s L50: 36 1207s 1207s # Fastq stats for reads.fastq.gz, reads >= 1000bp 1207s numReads: 349 1207s %totalNumReads: 94.07 1207s numBasepairs: 8599196 1207s %totalBasepairs: 99.85 1207s meanLen: 24639.530085959886 1207s medianLen: 10585.0 1207s minLen: 1009 1207s maxLen: 393431 1207s N50: 60395 1207s L50: 36 1207s 1207s # Fastq stats for reads.fastq.gz, reads >= 5000bp 1207s numReads: 246 1207s %totalNumReads: 66.31 1207s numBasepairs: 8296771 1207s %totalBasepairs: 96.34 1207s meanLen: 33726.71138211382 1207s medianLen: 17146.0 1207s minLen: 5082 1207s maxLen: 393431 1207s N50: 61111 1207s L50: 33 1207s 1207s # Fastq stats for reads.fastq.gz, reads >= 10000bp 1207s numReads: 178 1207s %totalNumReads: 47.98 1207s numBasepairs: 7817574 1207s %totalBasepairs: 90.78 1207s meanLen: 43918.95505617977 1207s medianLen: 25216.5 1207s minLen: 10192 1207s maxLen: 393431 1207s N50: 67193 1207s L50: 30 1207s 1207s 1207s Basepairs >= bin by mean PHRED and length 1207s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 1207s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 1207s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 1207s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 1207s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 1207s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 1207s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 1207s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 1207s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 1207s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 1207s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 1207s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 1207s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 1207s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 1207s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 1207s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 1207s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 1207s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 1207s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 1207s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 1207s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 1207s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 1207s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 1207s 10000 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471648 0 0 1207s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 1207s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 1207s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 1207s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 1207s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 1207s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 1207s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 1207s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 1207s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 1207s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 1207s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 1207s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 1207s 140000 1699582 1699582 1378920 930176 341725 0 0 0 1207s 160000 1699582 1699582 1378920 930176 341725 0 0 0 1207s 180000 1699582 1699582 1378920 930176 341725 0 0 0 1207s 200000 1504562 1504562 1183900 735156 341725 0 0 0 1207s 220000 1504562 1504562 1183900 735156 341725 0 0 0 1207s 240000 1055818 1055818 735156 735156 341725 0 0 0 1207s 260000 1055818 1055818 735156 735156 341725 0 0 0 1207s 280000 1055818 1055818 735156 735156 341725 0 0 0 1207s 300000 1055818 1055818 735156 735156 341725 0 0 0 1207s 320000 1055818 1055818 735156 735156 341725 0 0 0 1207s 340000 735156 735156 735156 735156 341725 0 0 0 1207s 360000 393431 393431 393431 393431 0 0 0 0 1207s 380000 393431 393431 393431 393431 0 0 0 0 1207s 400000 0 0 0 0 0 0 0 0 1207s 1207s Number of reads >= bin by mean Phred+Len 1207s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 1207s 0 371 321 277 207 114 49 2 0 1207s 250 369 320 276 206 113 48 2 0 1207s 500 363 315 273 203 112 47 2 0 1207s 750 355 311 270 201 111 46 2 0 1207s 1000 349 307 266 197 108 44 2 0 1207s 1500 341 302 263 194 106 44 2 0 1207s 2000 322 284 245 179 98 42 2 0 1207s 2500 308 271 233 172 94 40 2 0 1207s 3000 296 264 227 167 93 40 2 0 1207s 3500 282 251 215 156 84 36 2 0 1207s 4000 268 237 201 144 79 36 2 0 1207s 4500 256 226 192 140 77 34 2 0 1207s 5000 246 216 184 134 73 33 2 0 1207s 5500 236 208 176 130 72 32 1 0 1207s 6000 226 199 167 121 68 30 1 0 1207s 6500 215 190 160 115 65 28 0 0 1207s 7000 209 185 156 113 64 28 0 0 1207s 7500 203 179 151 110 62 26 0 0 1207s 8000 197 174 146 106 59 25 0 0 1207s 8500 191 170 142 103 57 25 0 0 1207s 9000 188 167 140 101 56 24 0 0 1207s 9500 182 161 137 100 55 24 0 0 1207s 10000 178 157 135 99 54 24 0 0 1207s 11000 169 150 129 94 51 24 0 0 1207s 12000 160 142 122 90 48 22 0 0 1207s 13000 144 128 111 84 46 21 0 0 1207s 14000 138 123 107 80 44 19 0 0 1207s 15000 134 119 103 76 41 18 0 0 1207s 16000 130 116 100 74 41 18 0 0 1207s 17000 123 109 94 69 38 17 0 0 1207s 18000 119 105 90 65 34 16 0 0 1207s 19000 115 102 87 63 33 15 0 0 1207s 20000 111 98 84 61 33 15 0 0 1207s 21000 105 93 80 58 30 13 0 0 1207s 22000 100 90 77 56 28 12 0 0 1207s 23000 96 86 73 53 26 11 0 0 1207s 24000 94 84 71 51 26 11 0 0 1207s 25000 90 80 68 49 25 11 0 0 1207s 26000 88 78 67 49 25 11 0 0 1207s 27000 84 74 64 47 23 10 0 0 1207s 28000 81 71 61 46 22 9 0 0 1207s 29000 76 66 57 42 21 8 0 0 1207s 30000 71 61 52 38 20 8 0 0 1207s 31000 69 59 50 36 19 7 0 0 1207s 32000 67 57 48 34 18 7 0 0 1207s 33000 66 56 47 33 18 7 0 0 1207s 34000 66 56 47 33 18 7 0 0 1207s 35000 64 55 46 32 18 7 0 0 1207s 36000 61 52 45 31 18 7 0 0 1207s 37000 58 49 44 30 17 7 0 0 1207s 38000 58 49 44 30 17 7 0 0 1207s 39000 57 49 44 30 17 7 0 0 1207s 40000 57 49 44 30 17 7 0 0 1207s 45000 52 46 42 29 17 7 0 0 1207s 50000 47 42 38 25 16 6 0 0 1207s 55000 43 38 34 21 13 4 0 0 1207s 60000 36 31 28 18 10 3 0 0 1207s 65000 32 28 25 16 9 2 0 0 1207s 70000 28 25 23 14 9 2 0 0 1207s 75000 23 21 19 12 7 2 0 0 1207s 80000 21 19 18 11 7 2 0 0 1207s 85000 20 18 17 11 7 2 0 0 1207s 90000 17 16 15 10 6 2 0 0 1207s 95000 17 16 15 10 6 2 0 0 1207s 100000 14 13 12 8 4 1 0 0 1207s 120000 10 9 8 5 2 0 0 0 1207s 140000 6 6 5 3 1 0 0 0 1207s 160000 6 6 5 3 1 0 0 0 1207s 180000 6 6 5 3 1 0 0 0 1207s 200000 5 5 4 2 1 0 0 0 1207s 220000 5 5 4 2 1 0 0 0 1207s 240000 3 3 2 2 1 0 0 0 1207s 260000 3 3 2 2 1 0 0 0 1207s 280000 3 3 2 2 1 0 0 0 1207s 300000 3 3 2 2 1 0 0 0 1207s 320000 3 3 2 2 1 0 0 0 1207s 340000 2 2 2 2 1 0 0 0 1207s 360000 1 1 1 1 0 0 0 0 1207s 380000 1 1 1 1 0 0 0 0 1207s 400000 0 0 0 0 0 0 0 0 1217s plotting in the following window: 1217s 0 <= Q-score (x-axis) <= 14.0 1217s 0 <= length (y-axis) <= 223383 1224s 1226s pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000 1237s Keeping reads that satisfy: length >= 0 and meanQual >= 0 and length <= 30000 1252s plotting in the following window: 1252s 0 <= Q-score (x-axis) <= 14.0 1252s 0 <= length (y-axis) <= 29294 1260s # Fastq stats for reads.fastq.gz, reads >= 0bp 1260s numReads: 300 1260s %totalNumReads: 100.00 1260s numBasepairs: 2729844 1260s %totalBasepairs: 100.00 1260s meanLen: 9099.48 1260s medianLen: 6204.5 1260s minLen: 212 1260s maxLen: 29590 1260s N50: 15222 1260s L50: 61 1260s 1260s # Fastq stats for reads.fastq.gz, reads >= 1000bp 1260s numReads: 278 1260s %totalNumReads: 92.67 1260s numBasepairs: 2717169 1260s %totalBasepairs: 99.54 1260s meanLen: 9773.989208633093 1260s medianLen: 6910.0 1260s minLen: 1009 1260s maxLen: 29590 1260s N50: 15222 1260s L50: 61 1260s 1260s # Fastq stats for reads.fastq.gz, reads >= 5000bp 1260s numReads: 175 1260s %totalNumReads: 58.33 1260s numBasepairs: 2414744 1260s %totalBasepairs: 88.46 1260s meanLen: 13798.537142857143 1260s medianLen: 12063.0 1260s minLen: 5082 1260s maxLen: 29590 1260s N50: 17307 1260s L50: 52 1260s 1260s # Fastq stats for reads.fastq.gz, reads >= 10000bp 1260s numReads: 107 1260s %totalNumReads: 35.67 1260s numBasepairs: 1935547 1260s %totalBasepairs: 70.90 1260s meanLen: 18089.22429906542 1260s medianLen: 16881.0 1260s minLen: 10192 1260s maxLen: 29590 1260s N50: 20295 1260s L50: 39 1260s 1260s 1260s Basepairs >= bin by mean PHRED and length 1260s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 1260s 0 2729844 2468957 2119643 1556484 858972 393665 11781 0 1260s 250 2729407 2468745 2119431 1556272 858760 393453 11781 0 1260s 500 2726928 2466658 2118130 1554971 858291 392984 11781 0 1260s 750 2721984 2464209 2116192 1553563 857617 392310 11781 0 1260s 1000 2717169 2460965 2112948 1550319 855138 390635 11781 0 1260s 1500 2707362 2454822 2109268 1546639 852794 390635 11781 0 1260s 2000 2672887 2422266 2076712 1519238 838240 387346 11781 0 1260s 2500 2641814 2393384 2050243 1503478 829208 382949 11781 0 1260s 3000 2609116 2374168 2033904 1489726 826376 382949 11781 0 1260s 3500 2564269 2332442 1995335 1454265 797280 370584 11781 0 1260s 4000 2512068 2280241 1943134 1409238 778266 370584 11781 0 1260s 4500 2462190 2234445 1905756 1392691 769886 362204 11781 0 1260s 5000 2414744 2186999 1867774 1364464 750909 357457 11781 0 1260s 5500 2362072 2144943 1825718 1343414 745461 352009 6333 0 1260s 6000 2305333 2093889 1774664 1292360 722519 340437 6333 0 1260s 6500 2236325 2037511 1730586 1254474 703348 327653 0 0 1260s 7000 2195737 2003551 1703356 1240708 696434 327653 0 0 1260s 7500 2152591 1960405 1667528 1219336 682352 313571 0 0 1260s 8000 2106380 1921709 1628832 1188281 658986 305742 0 0 1260s 8500 2056889 1888763 1595886 1163795 642742 305742 0 0 1260s 9000 2030952 1862826 1578483 1146392 633884 296884 0 0 1260s 9500 1974999 1806873 1550171 1136895 624387 296884 0 0 1260s 10000 1935547 1767421 1530498 1126915 614407 296884 0 0 1260s 11000 1840006 1693127 1467100 1074138 582873 296884 0 0 1260s 12000 1736297 1600554 1386518 1027634 547567 273563 0 0 1260s 13000 1534978 1424405 1249051 952931 523214 261500 0 0 1260s 14000 1453681 1356704 1195131 899011 495787 234073 0 0 1260s 15000 1395434 1298457 1136884 840764 451857 219542 0 0 1260s 16000 1334255 1252372 1090799 809901 451857 219542 0 0 1260s 17000 1217331 1135448 990860 726799 401685 202825 0 0 1260s 18000 1146730 1064847 920259 656198 331084 185250 0 0 1260s 19000 1072466 1008770 864182 618776 312433 166599 0 0 1260s 20000 993686 929990 805391 579331 312433 166599 0 0 1260s 21000 870897 827698 723394 518156 251258 126075 0 0 1260s 22000 763379 763379 659075 475682 208784 104960 0 0 1260s 23000 673728 673728 569424 408210 163731 82719 0 0 1260s 24000 627024 627024 522720 361506 163731 82719 0 0 1260s 25000 528646 528646 448453 312153 138944 82719 0 0 1260s 26000 478213 478213 423121 312153 138944 82719 0 0 1260s 27000 372570 372570 343949 259378 86169 56621 0 0 1260s 28000 289458 289458 260837 231544 58335 28787 0 0 1260s 29000 147115 147115 147115 117822 29548 0 0 0 1260s 30000 0 0 0 0 0 0 0 0 1260s 1260s Number of reads >= bin by mean Phred+Len 1260s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 1260s 0 300 260 225 169 94 41 2 0 1260s 250 298 259 224 168 93 40 2 0 1260s 500 292 254 221 165 92 39 2 0 1260s 750 284 250 218 163 91 38 2 0 1260s 1000 278 246 214 159 88 36 2 0 1260s 1500 270 241 211 156 86 36 2 0 1260s 2000 251 223 193 141 78 34 2 0 1260s 2500 237 210 181 134 74 32 2 0 1260s 3000 225 203 175 129 73 32 2 0 1260s 3500 211 190 163 118 64 28 2 0 1260s 4000 197 176 149 106 59 28 2 0 1260s 4500 185 165 140 102 57 26 2 0 1260s 5000 175 155 132 96 53 25 2 0 1260s 5500 165 147 124 92 52 24 1 0 1260s 6000 155 138 115 83 48 22 1 0 1260s 6500 144 129 108 77 45 20 0 0 1260s 7000 138 124 104 75 44 20 0 0 1260s 7500 132 118 99 72 42 18 0 0 1260s 8000 126 113 94 68 39 17 0 0 1260s 8500 120 109 90 65 37 17 0 0 1260s 9000 117 106 88 63 36 16 0 0 1260s 9500 111 100 85 62 35 16 0 0 1260s 10000 107 96 83 61 34 16 0 0 1260s 11000 98 89 77 56 31 16 0 0 1260s 12000 89 81 70 52 28 14 0 0 1260s 13000 73 67 59 46 26 13 0 0 1260s 14000 67 62 55 42 24 11 0 0 1260s 15000 63 58 51 38 21 10 0 0 1260s 16000 59 55 48 36 21 10 0 0 1260s 17000 52 48 42 31 18 9 0 0 1260s 18000 48 44 38 27 14 8 0 0 1260s 19000 44 41 35 25 13 7 0 0 1260s 20000 40 37 32 23 13 7 0 0 1260s 21000 34 32 28 20 10 5 0 0 1260s 22000 29 29 25 18 8 4 0 0 1260s 23000 25 25 21 15 6 3 0 0 1260s 24000 23 23 19 13 6 3 0 0 1260s 25000 19 19 16 11 5 3 0 0 1260s 26000 17 17 15 11 5 3 0 0 1260s 27000 13 13 12 9 3 2 0 0 1260s 28000 10 10 9 8 2 1 0 0 1260s 29000 5 5 5 4 1 0 0 0 1260s 30000 0 0 0 0 0 0 0 0 1260s 1261s pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg 1275s Keeping reads that satisfy: length >= 0 and meanQual >= 7.0 1280s # Fastq stats for reads.fastq.gz, reads >= 0bp 1280s numReads: 371 1280s %totalNumReads: 100.00 1280s numBasepairs: 8611871 1280s %totalBasepairs: 100.00 1280s meanLen: 23212.590296495957 1280s medianLen: 9390.0 1280s minLen: 212 1280s maxLen: 393431 1280s N50: 60395 1280s L50: 36 1280s 1280s # Fastq stats for reads.fastq.gz, reads >= 1000bp 1280s numReads: 349 1280s %totalNumReads: 94.07 1280s numBasepairs: 8599196 1280s %totalBasepairs: 99.85 1280s meanLen: 24639.530085959886 1280s medianLen: 10585.0 1280s minLen: 1009 1280s maxLen: 393431 1280s N50: 60395 1280s L50: 36 1280s 1280s # Fastq stats for reads.fastq.gz, reads >= 5000bp 1280s numReads: 246 1280s %totalNumReads: 66.31 1280s numBasepairs: 8296771 1280s %totalBasepairs: 96.34 1280s meanLen: 33726.71138211382 1280s medianLen: 17146.0 1280s minLen: 5082 1280s maxLen: 393431 1280s N50: 61111 1280s L50: 33 1280s 1280s # Fastq stats for reads.fastq.gz, reads >= 10000bp 1280s numReads: 178 1280s %totalNumReads: 47.98 1280s numBasepairs: 7817574 1280s %totalBasepairs: 90.78 1280s meanLen: 43918.95505617977 1280s medianLen: 25216.5 1280s minLen: 10192 1280s maxLen: 393431 1280s N50: 67193 1280s L50: 30 1280s 1280s 1280s Basepairs >= bin by mean PHRED and length 1280s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 1280s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 1280s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 1280s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 1280s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 1280s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 1280s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 1280s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 1280s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 1280s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 1280s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 1280s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 1280s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 1280s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 1280s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 1280s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 1280s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 1280s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 1280s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 1280s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 1280s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 1280s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 1280s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 1280s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 1280s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 1280s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 1280s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 1280s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 1280s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 1280s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 1280s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 1280s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 1280s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 1280s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 1280s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 1280s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 1280s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 1280s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 1280s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 1280s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 1280s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 1280s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 1280s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 1280s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 1280s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 1280s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 1280s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 1280s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 1280s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 1280s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 1280s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 1280s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 1280s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 1280s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 1280s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 1280s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 1280s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 1280s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 1280s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 1280s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 1280s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 1280s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 1280s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 1280s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 1280s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 1280s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 1280s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 1280s 140000 1699582 1699582 1378920 930176 341725 0 0 0 1280s 160000 1699582 1699582 1378920 930176 341725 0 0 0 1280s 180000 1699582 1699582 1378920 930176 341725 0 0 0 1280s 200000 1504562 1504562 1183900 735156 341725 0 0 0 1280s 220000 1504562 1504562 1183900 735156 341725 0 0 0 1280s 240000 1055818 1055818 735156 735156 341725 0 0 0 1280s 260000 1055818 1055818 735156 735156 341725 0 0 0 1280s 280000 1055818 1055818 735156 735156 341725 0 0 0 1280s 300000 1055818 1055818 735156 735156 341725 0 0 0 1280s 320000 1055818 1055818 735156 735156 341725 0 0 0 1280s 340000 735156 735156 735156 735156 341725 0 0 0 1280s 360000 393431 393431 393431 393431 0 0 0 0 1280s 380000 393431 393431 393431 393431 0 0 0 0 1280s 400000 0 0 0 0 0 0 0 0 1280s 1280s Number of reads >= bin by mean Phred+Len 1280s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 1280s 0 371 321 277 207 114 49 2 0 1280s 250 369 320 276 206 113 48 2 0 1280s 500 363 315 273 203 112 47 2 0 1280s 750 355 311 270 201 111 46 2 0 1280s 1000 349 307 266 197 108 44 2 0 1280s 1500 341 302 263 194 106 44 2 0 1280s 2000 322 284 245 179 98 42 2 0 1280s 2500 308 271 233 172 94 40 2 0 1280s 3000 296 264 227 167 93 40 2 0 1280s 3500 282 251 215 156 84 36 2 0 1280s 4000 268 237 201 144 79 36 2 0 1280s 4500 256 226 192 140 77 34 2 0 1280s 5000 246 216 184 134 73 33 2 0 1280s 5500 236 208 176 130 72 32 1 0 1280s 6000 226 199 167 121 68 30 1 0 1280s 6500 215 190 160 115 65 28 0 0 1280s 7000 209 185 156 113 64 28 0 0 1280s 7500 203 179 151 110 62 26 0 0 1280s 8000 197 174 146 106 59 25 0 0 1280s 8500 191 170 142 103 57 25 0 0 1280s 9000 188 167 140 101 56 24 0 0 1280s 9500 182 161 137 100 55 24 0 0 1280s 10000 178 157 135 99 54 24 0 0 1280s 11000 169 150 129 94 51 24 0 0 1280s 12000 160 142 122 90 48 22 0 0 1280s 13000 144 128 111 84 46 21 0 0 1280s 14000 138 123 107 80 44 19 0 0 1280s 15000 134 119 103 76 41 18 0 0 1280s 16000 130 116 100 74 41 18 0 0 1280s 17000 123 109 94 69 38 17 0 0 1280s 18000 119 105 90 65 34 16 0 0 1280s 19000 115 102 87 63 33 15 0 0 1280s 20000 111 98 84 61 33 15 0 0 1280s 21000 105 93 80 58 30 13 0 0 1280s 22000 100 90 77 56 28 12 0 0 1280s 23000 96 86 73 53 26 11 0 0 1280s 24000 94 84 71 51 26 11 0 0 1280s 25000 90 80 68 49 25 11 0 0 1280s 26000 88 78 67 49 25 11 0 0 1280s 27000 84 74 64 47 23 10 0 0 1280s 28000 81 71 61 46 22 9 0 0 1280s 29000 76 66 57 42 21 8 0 0 1280s 30000 71 61 52 38 20 8 0 0 1280s 31000 69 59 50 36 19 7 0 0 1280s 32000 67 57 48 34 18 7 0 0 1280s 33000 66 56 47 33 18 7 0 0 1280s 34000 66 56 47 33 18 7 0 0 1280s 35000 64 55 46 32 18 7 0 0 1280s 36000 61 52 45 31 18 7 0 0 1280s 37000 58 49 44 30 17 7 0 0 1280s 38000 58 49 44 30 17 7 0 0 1280s 39000 57 49 44 30 17 7 0 0 1280s 40000 57 49 44 30 17 7 0 0 1280s 45000 52 46 42 29 17 7 0 0 1280s 50000 47 42 38 25 16 6 0 0 1280s 55000 43 38 34 21 13 4 0 0 1280s 60000 36 31 28 18 10 3 0 0 1280s 65000 32 28 25 16 9 2 0 0 1280s 70000 28 25 23 14 9 2 0 0 1280s 75000 23 21 19 12 7 2 0 0 1280s 80000 21 19 18 11 7 2 0 0 1280s 85000 20 18 17 11 7 2 0 0 1280s 90000 17 16 15 10 6 2 0 0 1280s 95000 17 16 15 10 6 2 0 0 1280s 100000 14 13 12 8 4 1 0 0 1280s 120000 10 9 8 5 2 0 0 0 1280s 140000 6 6 5 3 1 0 0 0 1280s 160000 6 6 5 3 1 0 0 0 1280s 180000 6 6 5 3 1 0 0 0 1280s 200000 5 5 4 2 1 0 0 0 1280s 220000 5 5 4 2 1 0 0 0 1280s 240000 3 3 2 2 1 0 0 0 1280s 260000 3 3 2 2 1 0 0 0 1280s 280000 3 3 2 2 1 0 0 0 1280s 300000 3 3 2 2 1 0 0 0 1280s 320000 3 3 2 2 1 0 0 0 1280s 340000 2 2 2 2 1 0 0 0 1280s 360000 1 1 1 1 0 0 0 0 1280s 380000 1 1 1 1 0 0 0 0 1280s 400000 0 0 0 0 0 0 0 0 1291s plotting in the following window: 1291s 0 <= Q-score (x-axis) <= 14.0 1291s 0 <= length (y-axis) <= 223383 1298s 1300s 1300s pauvre stats -h 1300s usage: pauvre stats [-h] [-q] [-f FASTQ] [-H] [--filt_maxlen FILT_MAXLEN] 1300s [--filt_maxqual FILT_MAXQUAL] [--filt_minlen FILT_MINLEN] 1300s [--filt_minqual FILT_MINQUAL] 1300s 1300s options: 1300s -h, --help show this help message and exit 1300s -q, --quiet Do not output warnings to stderr 1300s -f FASTQ, --fastq FASTQ 1300s The input FASTQ file. 1300s -H, --histogram Make a histogram of the read lengths and saves it to a 1300s new file 1300s --filt_maxlen FILT_MAXLEN 1300s This sets the max read length filter reads. 1300s --filt_maxqual FILT_MAXQUAL 1300s This sets the max mean read quality to filter reads. 1300s --filt_minlen FILT_MINLEN 1300s This sets the min read length to filter reads. 1300s --filt_minqual FILT_MINQUAL 1300s This sets the min mean read quality to filter reads. 1300s pauvre stats -f nanotest/reads.fastq.gz 1318s # Fastq stats for reads.fastq.gz, reads >= 0bp 1318s numReads: 371 1318s %totalNumReads: 100.00 1318s numBasepairs: 8611871 1318s %totalBasepairs: 100.00 1318s meanLen: 23212.590296495957 1318s medianLen: 9390.0 1318s minLen: 212 1318s maxLen: 393431 1318s N50: 60395 1318s L50: 36 1318s 1318s # Fastq stats for reads.fastq.gz, reads >= 1000bp 1318s numReads: 349 1318s %totalNumReads: 94.07 1318s numBasepairs: 8599196 1318s %totalBasepairs: 99.85 1318s meanLen: 24639.530085959886 1318s medianLen: 10585.0 1318s minLen: 1009 1318s maxLen: 393431 1318s N50: 60395 1318s L50: 36 1318s 1318s # Fastq stats for reads.fastq.gz, reads >= 5000bp 1318s numReads: 246 1318s %totalNumReads: 66.31 1318s numBasepairs: 8296771 1318s %totalBasepairs: 96.34 1318s meanLen: 33726.71138211382 1318s medianLen: 17146.0 1318s minLen: 5082 1318s maxLen: 393431 1318s N50: 61111 1318s L50: 33 1318s 1318s # Fastq stats for reads.fastq.gz, reads >= 10000bp 1318s numReads: 178 1318s %totalNumReads: 47.98 1318s numBasepairs: 7817574 1318s %totalBasepairs: 90.78 1318s meanLen: 43918.95505617977 1318s medianLen: 25216.5 1318s minLen: 10192 1318s maxLen: 393431 1318s N50: 67193 1318s L50: 30 1318s 1318s 1318s Basepairs >= bin by mean PHRED and length 1318s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 1318s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 1318s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 1318s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 1318s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 1318s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 1318s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 1318s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 1318s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 1318s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 1318s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 1318s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 1318s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 1318s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 1318s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 1318s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 1318s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 1318s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 1318s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 1318s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 1318s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 1318s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 1318s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 1318s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 1318s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 1318s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 1318s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 1318s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 1318s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 1318s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 1318s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 1318s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 1318s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 1318s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 1318s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 1318s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 1318s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 1318s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 1318s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 1318s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 1318s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 1318s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 1318s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 1318s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 1318s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 1318s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 1318s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 1318s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 1318s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 1318s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 1318s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 1318s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 1318s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 1318s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 1318s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 1318s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 1318s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 1318s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 1318s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 1318s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 1318s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 1318s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 1318s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 1318s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 1318s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 1318s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 1318s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 1318s 140000 1699582 1699582 1378920 930176 341725 0 0 0 1318s 160000 1699582 1699582 1378920 930176 341725 0 0 0 1318s 180000 1699582 1699582 1378920 930176 341725 0 0 0 1318s 200000 1504562 1504562 1183900 735156 341725 0 0 0 1318s 220000 1504562 1504562 1183900 735156 341725 0 0 0 1318s 240000 1055818 1055818 735156 735156 341725 0 0 0 1318s 260000 1055818 1055818 735156 735156 341725 0 0 0 1318s 280000 1055818 1055818 735156 735156 341725 0 0 0 1318s 300000 1055818 1055818 735156 735156 341725 0 0 0 1318s 320000 1055818 1055818 735156 735156 341725 0 0 0 1318s 340000 735156 735156 735156 735156 341725 0 0 0 1318s 360000 393431 393431 393431 393431 0 0 0 0 1318s 380000 393431 393431 393431 393431 0 0 0 0 1318s 400000 0 0 0 0 0 0 0 0 1318s 1318s Number of reads >= bin by mean Phred+Len 1318s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 1318s 0 371 321 277 207 114 49 2 0 1318s 250 369 320 276 206 113 48 2 0 1318s 500 363 315 273 203 112 47 2 0 1318s 750 355 311 270 201 111 46 2 0 1318s 1000 349 307 266 197 108 44 2 0 1318s 1500 341 302 263 194 106 44 2 0 1318s 2000 322 284 245 179 98 42 2 0 1318s 2500 308 271 233 172 94 40 2 0 1318s 3000 296 264 227 167 93 40 2 0 1318s 3500 282 251 215 156 84 36 2 0 1318s 4000 268 237 201 144 79 36 2 0 1318s 4500 256 226 192 140 77 34 2 0 1318s 5000 246 216 184 134 73 33 2 0 1318s 5500 236 208 176 130 72 32 1 0 1318s 6000 226 199 167 121 68 30 1 0 1318s 6500 215 190 160 115 65 28 0 0 1318s 7000 209 185 156 113 64 28 0 0 1318s 7500 203 179 151 110 62 26 0 0 1318s 8000 197 174 146 106 59 25 0 0 1318s 8500 191 170 142 103 57 25 0 0 1318s 9000 188 167 140 101 56 24 0 0 1318s 9500 182 161 137 100 55 24 0 0 1318s 10000 178 157 135 99 54 24 0 0 1318s 11000 169 150 129 94 51 24 0 0 1318s 12000 160 142 122 90 48 22 0 0 1318s 13000 144 128 111 84 46 21 0 0 1318s 14000 138 123 107 80 44 19 0 0 1318s 15000 134 119 103 76 41 18 0 0 1318s 16000 130 116 100 74 41 18 0 0 1318s 17000 123 109 94 69 38 17 0 0 1318s 18000 119 105 90 65 34 16 0 0 1318s 19000 115 102 87 63 33 15 0 0 1318s 20000 111 98 84 61 33 15 0 0 1318s 21000 105 93 80 58 30 13 0 0 1318s 22000 100 90 77 56 28 12 0 0 1318s 23000 96 86 73 53 26 11 0 0 1318s 24000 94 84 71 51 26 11 0 0 1318s 25000 90 80 68 49 25 11 0 0 1318s 26000 88 78 67 49 25 11 0 0 1318s 27000 84 74 64 47 23 10 0 0 1318s 28000 81 71 61 46 22 9 0 0 1318s 29000 76 66 57 42 21 8 0 0 1318s 30000 71 61 52 38 20 8 0 0 1318s 31000 69 59 50 36 19 7 0 0 1318s 32000 67 57 48 34 18 7 0 0 1318s 33000 66 56 47 33 18 7 0 0 1318s 34000 66 56 47 33 18 7 0 0 1318s 35000 64 55 46 32 18 7 0 0 1318s 36000 61 52 45 31 18 7 0 0 1318s 37000 58 49 44 30 17 7 0 0 1318s 38000 58 49 44 30 17 7 0 0 1318s 39000 57 49 44 30 17 7 0 0 1318s 40000 57 49 44 30 17 7 0 0 1318s 45000 52 46 42 29 17 7 0 0 1318s 50000 47 42 38 25 16 6 0 0 1318s 55000 43 38 34 21 13 4 0 0 1318s 60000 36 31 28 18 10 3 0 0 1318s 65000 32 28 25 16 9 2 0 0 1318s 70000 28 25 23 14 9 2 0 0 1318s 75000 23 21 19 12 7 2 0 0 1318s 80000 21 19 18 11 7 2 0 0 1318s 85000 20 18 17 11 7 2 0 0 1318s 90000 17 16 15 10 6 2 0 0 1318s 95000 17 16 15 10 6 2 0 0 1318s 100000 14 13 12 8 4 1 0 0 1318s 120000 10 9 8 5 2 0 0 0 1318s 140000 6 6 5 3 1 0 0 0 1318s 160000 6 6 5 3 1 0 0 0 1318s 180000 6 6 5 3 1 0 0 0 1318s 200000 5 5 4 2 1 0 0 0 1318s 220000 5 5 4 2 1 0 0 0 1318s 240000 3 3 2 2 1 0 0 0 1318s 260000 3 3 2 2 1 0 0 0 1318s 280000 3 3 2 2 1 0 0 0 1318s 300000 3 3 2 2 1 0 0 0 1318s 320000 3 3 2 2 1 0 0 0 1318s 340000 2 2 2 2 1 0 0 0 1318s 360000 1 1 1 1 0 0 0 0 1318s 380000 1 1 1 1 0 0 0 0 1318s 400000 0 0 0 0 0 0 0 0 1318s 1320s pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12 1338s # Fastq stats for reads.fastq.gz, reads >= 0bp 1338s numReads: 371 1338s %totalNumReads: 100.00 1338s numBasepairs: 8611871 1338s %totalBasepairs: 100.00 1338s meanLen: 23212.590296495957 1338s medianLen: 9390.0 1338s minLen: 212 1338s maxLen: 393431 1338s N50: 60395 1338s L50: 36 1338s 1338s # Fastq stats for reads.fastq.gz, reads >= 1000bp 1338s numReads: 349 1338s %totalNumReads: 94.07 1338s numBasepairs: 8599196 1338s %totalBasepairs: 99.85 1338s meanLen: 24639.530085959886 1338s medianLen: 10585.0 1338s minLen: 1009 1338s maxLen: 393431 1338s N50: 60395 1338s L50: 36 1338s 1338s # Fastq stats for reads.fastq.gz, reads >= 5000bp 1338s numReads: 246 1338s %totalNumReads: 66.31 1338s numBasepairs: 8296771 1338s %totalBasepairs: 96.34 1338s meanLen: 33726.71138211382 1338s medianLen: 17146.0 1338s minLen: 5082 1338s maxLen: 393431 1338s N50: 61111 1338s L50: 33 1338s 1338s # Fastq stats for reads.fastq.gz, reads >= 10000bp 1338s numReads: 178 1338s %totalNumReads: 47.98 1338s numBasepairs: 7817574 1338s %totalBasepairs: 90.78 1338s meanLen: 43918.95505617977 1338s medianLen: 25216.5 1338s minLen: 10192 1338s maxLen: 393431 1338s N50: 67193 1338s L50: 30 1338s 1338s 1338s Basepairs >= bin by mean PHRED and length 1338s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 1338s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 1338s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 1338s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 1338s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 1338s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 1338s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 1338s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 1338s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 1338s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 1338s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 1338s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 1338s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 1338s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 1338s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 1338s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 1338s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 1338s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 1338s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 1338s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 1338s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 1338s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 1338s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 1338s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 1338s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 1338s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 1338s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 1338s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 1338s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 1338s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 1338s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 1338s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 1338s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 1338s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 1338s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 1338s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 1338s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 1338s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 1338s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 1338s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 1338s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 1338s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 1338s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 1338s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 1338s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 1338s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 1338s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 1338s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 1338s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 1338s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 1338s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 1338s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 1338s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 1338s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 1338s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 1338s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 1338s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 1338s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 1338s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 1338s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 1338s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 1338s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 1338s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 1338s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 1338s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 1338s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 1338s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 1338s 140000 1699582 1699582 1378920 930176 341725 0 0 0 1338s 160000 1699582 1699582 1378920 930176 341725 0 0 0 1338s 180000 1699582 1699582 1378920 930176 341725 0 0 0 1338s 200000 1504562 1504562 1183900 735156 341725 0 0 0 1338s 220000 1504562 1504562 1183900 735156 341725 0 0 0 1338s 240000 1055818 1055818 735156 735156 341725 0 0 0 1338s 260000 1055818 1055818 735156 735156 341725 0 0 0 1338s 280000 1055818 1055818 735156 735156 341725 0 0 0 1338s 300000 1055818 1055818 735156 735156 341725 0 0 0 1338s 320000 1055818 1055818 735156 735156 341725 0 0 0 1338s 340000 735156 735156 735156 735156 341725 0 0 0 1338s 360000 393431 393431 393431 393431 0 0 0 0 1338s 380000 393431 393431 393431 393431 0 0 0 0 1338s 400000 0 0 0 0 0 0 0 0 1338s 1338s Number of reads >= bin by mean Phred+Len 1338s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 1338s 0 371 321 277 207 114 49 2 0 1338s 250 369 320 276 206 113 48 2 0 1338s 500 363 315 273 203 112 47 2 0 1338s 750 355 311 270 201 111 46 2 0 1338s 1000 349 307 266 197 108 44 2 0 1338s 1500 341 302 263 194 106 44 2 0 1338s 2000 322 284 245 179 98 42 2 0 1338s 2500 308 271 233 172 94 40 2 0 1338s 3000 296 264 227 167 93 40 2 0 1338s 3500 282 251 215 156 84 36 2 0 1338s 4000 268 237 201 144 79 36 2 0 1338s 4500 256 226 192 140 77 34 2 0 1338s 5000 246 216 184 134 73 33 2 0 1338s 5500 236 208 176 130 72 32 1 0 1338s 6000 226 199 167 121 68 30 1 0 1338s 6500 215 190 160 115 65 28 0 0 1338s 7000 209 185 156 113 64 28 0 0 1338s 7500 203 179 151 110 62 26 0 0 1338s 8000 197 174 146 106 59 25 0 0 1338s 8500 191 170 142 103 57 25 0 0 1338s 9000 188 167 140 101 56 24 0 0 1338s 9500 182 161 137 100 55 24 0 0 1338s 10000 178 157 135 99 54 24 0 0 1338s 11000 169 150 129 94 51 24 0 0 1338s 12000 160 142 122 90 48 22 0 0 1338s 13000 144 128 111 84 46 21 0 0 1338s 14000 138 123 107 80 44 19 0 0 1338s 15000 134 119 103 76 41 18 0 0 1338s 16000 130 116 100 74 41 18 0 0 1338s 17000 123 109 94 69 38 17 0 0 1338s 18000 119 105 90 65 34 16 0 0 1338s 19000 115 102 87 63 33 15 0 0 1338s 20000 111 98 84 61 33 15 0 0 1338s 21000 105 93 80 58 30 13 0 0 1338s 22000 100 90 77 56 28 12 0 0 1338s 23000 96 86 73 53 26 11 0 0 1338s 24000 94 84 71 51 26 11 0 0 1338s 25000 90 80 68 49 25 11 0 0 1338s 26000 88 78 67 49 25 11 0 0 1338s 27000 84 74 64 47 23 10 0 0 1338s 28000 81 71 61 46 22 9 0 0 1338s 29000 76 66 57 42 21 8 0 0 1338s 30000 71 61 52 38 20 8 0 0 1338s 31000 69 59 50 36 19 7 0 0 1338s 32000 67 57 48 34 18 7 0 0 1338s 33000 66 56 47 33 18 7 0 0 1338s 34000 66 56 47 33 18 7 0 0 1338s 35000 64 55 46 32 18 7 0 0 1338s 36000 61 52 45 31 18 7 0 0 1338s 37000 58 49 44 30 17 7 0 0 1338s 38000 58 49 44 30 17 7 0 0 1338s 39000 57 49 44 30 17 7 0 0 1338s 40000 57 49 44 30 17 7 0 0 1338s 45000 52 46 42 29 17 7 0 0 1338s 50000 47 42 38 25 16 6 0 0 1338s 55000 43 38 34 21 13 4 0 0 1338s 60000 36 31 28 18 10 3 0 0 1338s 65000 32 28 25 16 9 2 0 0 1338s 70000 28 25 23 14 9 2 0 0 1338s 75000 23 21 19 12 7 2 0 0 1338s 80000 21 19 18 11 7 2 0 0 1338s 85000 20 18 17 11 7 2 0 0 1338s 90000 17 16 15 10 6 2 0 0 1338s 95000 17 16 15 10 6 2 0 0 1338s 100000 14 13 12 8 4 1 0 0 1338s 120000 10 9 8 5 2 0 0 0 1338s 140000 6 6 5 3 1 0 0 0 1338s 160000 6 6 5 3 1 0 0 0 1338s 180000 6 6 5 3 1 0 0 0 1338s 200000 5 5 4 2 1 0 0 0 1338s 220000 5 5 4 2 1 0 0 0 1338s 240000 3 3 2 2 1 0 0 0 1338s 260000 3 3 2 2 1 0 0 0 1338s 280000 3 3 2 2 1 0 0 0 1338s 300000 3 3 2 2 1 0 0 0 1338s 320000 3 3 2 2 1 0 0 0 1338s 340000 2 2 2 2 1 0 0 0 1338s 360000 1 1 1 1 0 0 0 0 1338s 380000 1 1 1 1 0 0 0 0 1338s 400000 0 0 0 0 0 0 0 0 1338s 1340s autopkgtest [04:03:33]: test run-unit-test: -----------------------] 1341s autopkgtest [04:03:34]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1341s run-unit-test PASS 1342s autopkgtest [04:03:35]: @@@@@@@@@@@@@@@@@@@@ summary 1342s run-unit-test PASS 1380s Creating nova instance adt-noble-arm64-python-pauvre-20240325-034113-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)...