0s autopkgtest [17:09:09]: starting date and time: 2024-03-24 17:09:09+0000 0s autopkgtest [17:09:09]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [17:09:09]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.obt1ise4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python-pysam,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade python-nanoget --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python-pysam/0.22.0+ds-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-8.secgroup --name adt-noble-arm64-python-nanoget-20240324-170909-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 73s autopkgtest [17:10:22]: testbed dpkg architecture: arm64 73s autopkgtest [17:10:22]: testbed apt version: 2.7.12 73s autopkgtest [17:10:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 73s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 74s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 75s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 75s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 75s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 75s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 76s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 76s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 76s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 76s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 76s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 76s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 76s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 78s Fetched 9850 kB in 3s (2868 kB/s) 78s Reading package lists... 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 82s Calculating upgrade... 82s The following packages will be REMOVED: 82s libssl3 82s The following NEW packages will be installed: 82s libssl3t64 82s The following packages have been kept back: 82s curl 82s The following packages will be upgraded: 82s openssl 82s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 82s Need to get 2777 kB of archives. 82s After this operation, 139 kB of additional disk space will be used. 82s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 83s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 83s Fetched 2777 kB in 1s (3555 kB/s) 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74819 files and directories currently installed.) 84s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 84s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 84s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 84s wget depends on libssl3 (>= 3.0.0). 84s u-boot-tools depends on libssl3 (>= 3.0.0). 84s tnftp depends on libssl3 (>= 3.0.0). 84s tcpdump depends on libssl3 (>= 3.0.0). 84s systemd-resolved depends on libssl3 (>= 3.0.0). 84s systemd depends on libssl3 (>= 3.0.0). 84s sudo depends on libssl3 (>= 3.0.0). 84s sbsigntool depends on libssl3 (>= 3.0.0). 84s rsync depends on libssl3 (>= 3.0.0). 84s python3-cryptography depends on libssl3 (>= 3.0.0). 84s openssh-server depends on libssl3 (>= 3.0.10). 84s openssh-client depends on libssl3 (>= 3.0.10). 84s mtd-utils depends on libssl3 (>= 3.0.0). 84s mokutil depends on libssl3 (>= 3.0.0). 84s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 84s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 84s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 84s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 84s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 84s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 84s libnvme1 depends on libssl3 (>= 3.0.0). 84s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 84s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 84s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 84s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 84s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 84s kmod depends on libssl3 (>= 3.0.0). 84s dhcpcd-base depends on libssl3 (>= 3.0.0). 84s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 84s 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74819 files and directories currently installed.) 84s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 84s Selecting previously unselected package libssl3t64:arm64. 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74808 files and directories currently installed.) 84s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 84s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 84s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 84s Setting up openssl (3.0.13-0ubuntu2) ... 84s Processing triggers for man-db (2.12.0-3) ... 85s Processing triggers for libc-bin (2.39-0ubuntu6) ... 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 86s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 87s sh: Attempting to set up Debian/Ubuntu apt sources automatically 87s sh: Distribution appears to be Ubuntu 87s Reading package lists... 88s Building dependency tree... 88s Reading state information... 88s eatmydata is already the newest version (131-1). 88s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 89s dbus is already the newest version (1.14.10-4ubuntu1). 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 90s rng-tools-debian is already the newest version (2.4). 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s The following packages will be REMOVED: 90s cloud-init* python3-configobj* python3-debconf* 91s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 91s After this operation, 3256 kB disk space will be freed. 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74821 files and directories currently installed.) 91s Removing cloud-init (24.1.2-0ubuntu1) ... 91s Removing python3-configobj (5.0.8-3) ... 91s Removing python3-debconf (1.5.86) ... 91s Processing triggers for man-db (2.12.0-3) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74432 files and directories currently installed.) 92s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 92s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 92s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 92s invoke-rc.d: policy-rc.d denied execution of try-restart. 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s linux-generic is already the newest version (6.8.0-11.11+1). 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 94s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 94s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 96s Reading package lists... 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s Calculating upgrade... 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s autopkgtest [17:10:47]: rebooting testbed after setup commands that affected boot 126s autopkgtest [17:11:15]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 128s autopkgtest [17:11:17]: @@@@@@@@@@@@@@@@@@@@ apt-source python-nanoget 137s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-nanoget 1.19.3-1 (dsc) [1637 B] 137s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-nanoget 1.19.3-1 (tar) [21.5 kB] 137s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-nanoget 1.19.3-1 (diff) [26.2 MB] 137s gpgv: Signature made Sun Feb 4 12:05:57 2024 UTC 137s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 137s gpgv: Can't check signature: No public key 137s dpkg-source: warning: cannot verify inline signature for ./python-nanoget_1.19.3-1.dsc: no acceptable signature found 137s autopkgtest [17:11:22]: testing package python-nanoget version 1.19.3-1 138s autopkgtest [17:11:27]: build not needed 139s autopkgtest [17:11:28]: test run-unit-test: preparing testbed 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Starting pkgProblemResolver with broken count: 0 147s Starting 2 pkgProblemResolver with broken count: 0 147s Done 148s The following additional packages will be installed: 148s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 148s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 148s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 148s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 148s liblerc4 libopenjp2-7 libpixman-1-0 libpython3.11-minimal 148s libpython3.11-stdlib libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 148s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 python3-biopython 148s python3-cairo python3-dateutil python3-deprecated python3-freetype 148s python3-nanoget python3-nanoget-examples python3-nanomath python3-numpy 148s python3-pandas python3-pandas-lib python3-pil python3-pysam 148s python3-reportlab python3-rlpycairo python3-wrapt python3.11 148s python3.11-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings 148s xfonts-utils xml-core 148s Suggested packages: 148s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 148s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 148s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 148s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 148s gcc gfortran python3-dev python3-pytest python-pandas-doc 148s python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools 148s python-reportlab-doc rl-accel rl-renderpm python3.11-venv python3.11-doc 148s binfmt-support sgml-base-doc debhelper 148s Recommended packages: 148s python-biopython-doc ncbi-blast+ python3-scipy python3-matplotlib 148s python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 148s python3-html5lib python3-lxml python3-tables python3-olefile 148s The following NEW packages will be installed: 148s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-extra 148s fonts-dejavu-mono fonts-urw-base35 libblas3 libcairo2 libdeflate0 148s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 148s libharfbuzz0b libhts3 libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 148s libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 148s libpython3.11-minimal libpython3.11-stdlib libraqm0 libsharpyuv0 libtiff6 148s libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 148s python3-biopython python3-cairo python3-dateutil python3-deprecated 148s python3-freetype python3-nanoget python3-nanoget-examples python3-nanomath 148s python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pysam 148s python3-reportlab python3-rlpycairo python3-wrapt python3.11 148s python3.11-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings 148s xfonts-utils xml-core 148s 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded. 148s Need to get 76.0 MB/76.0 MB of archives. 148s After this operation, 249 MB of additional disk space will be used. 148s Get:1 /tmp/autopkgtest.a1QyTV/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 148s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB] 149s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB] 149s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 sgml-base all 1.31 [11.4 kB] 149s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB] 149s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB] 149s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 149s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 149s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libfontenc1 arm64 1:1.1.8-1 [13.9 kB] 149s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 149s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 149s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-utils arm64 1:7.7+6build2 [93.6 kB] 149s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 149s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 149s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-extra all 2.37-8 [1947 kB] 149s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 149s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 149s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 149s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 149s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 149s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 149s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 149s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 149s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 149s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 149s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 149s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 149s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 149s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 149s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libimagequant0 arm64 2.18.0-1 [37.0 kB] 149s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 149s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 150s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 150s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 150s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 150s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1 [14.4 kB] 150s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 150s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 150s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 150s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 150s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB] 150s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB] 150s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 150s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 150s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pil arm64 10.2.0-1 [477 kB] 150s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 python3-cairo arm64 1.25.1-2 [153 kB] 150s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-freetype all 2.4.0-1 [83.1 kB] 150s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 150s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-reportlab all 4.1.0-1 [683 kB] 150s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 xml-core all 0.19 [20.3 kB] 150s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 150s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-biopython arm64 1.81+dfsg-3 [1664 kB] 150s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB] 150s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 python3-wrapt arm64 1.15.0-2build1 [39.5 kB] 150s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-deprecated all 1.2.14-1 [10.5 kB] 150s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-4ubuntu2 [7669 kB] 150s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 150s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pysam arm64 0.22.0+ds-1 [4399 kB] 150s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-nanomath all 1.2.1+ds-1 [8208 B] 150s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-nanoget all 1.19.3-1 [11.9 kB] 150s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-nanoget-examples all 1.19.3-1 [26.2 MB] 153s Fetched 76.0 MB in 3s (28.9 MB/s) 153s Selecting previously unselected package libpython3.11-minimal:arm64. 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74377 files and directories currently installed.) 153s Preparing to unpack .../00-libpython3.11-minimal_3.11.8-1_arm64.deb ... 153s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... 153s Selecting previously unselected package python3.11-minimal. 153s Preparing to unpack .../01-python3.11-minimal_3.11.8-1_arm64.deb ... 153s Unpacking python3.11-minimal (3.11.8-1) ... 153s Selecting previously unselected package sgml-base. 153s Preparing to unpack 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157s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 157s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 157s Setting up libxcb-render0:arm64 (1.15-1) ... 157s Setting up x11-common (1:7.7+23ubuntu2) ... 158s Setting up libdeflate0:arm64 (1.19-1) ... 158s Setting up libxcb-shm0:arm64 (1.15-1) ... 158s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 158s Setting up python3-freetype (2.4.0-1) ... 158s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 158s Setting up libfontenc1:arm64 (1:1.1.8-1) ... 158s Setting up libblas3:arm64 (3.12.0-3) ... 158s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 158s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 158s Setting up libimagequant0:arm64 (2.18.0-1) ... 158s Setting up fonts-dejavu-mono (2.37-8) ... 158s Setting up python3-wrapt (1.15.0-2build1) ... 158s Setting up fonts-dejavu-core (2.37-8) ... 158s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 158s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 158s Setting up libwebp7:arm64 (1.3.2-0.4) ... 158s Setting up fonts-dejavu-extra (2.37-8) ... 158s Setting up python3-nanoget-examples (1.19.3-1) ... 158s Setting up libopenjp2-7:arm64 (2.5.0-2) ... 158s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 158s Setting up python3-dateutil (2.8.2-3) ... 158s Setting up sgml-base (1.31) ... 158s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... 158s Setting up libwebpmux3:arm64 (1.3.2-0.4) ... 158s Setting up python3-deprecated (1.2.14-1) ... 158s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 158s Setting up python3.11-minimal (3.11.8-1) ... 159s Setting up liblapack3:arm64 (3.12.0-3) ... 159s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 159s Setting up libhts3:arm64 (1.18+ds-1) ... 159s Setting up python3-pysam (0.22.0+ds-1) ... 159s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 159s Setting up libwebpdemux2:arm64 (1.3.2-0.4) ... 159s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... 159s Setting up xfonts-utils (1:7.7+6build2) ... 159s Setting up libraqm0:arm64 (0.10.1-1) ... 159s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 159s Setting up xml-core (0.19) ... 159s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 159s Setting up python3.11 (3.11.8-1) ... 160s Setting up fonts-urw-base35 (20200910-8) ... 160s Setting up libcairo2:arm64 (1.18.0-1) ... 160s Setting up python3-pil:arm64 (10.2.0-1) ... 161s Setting up python3-numpy (1:1.24.2-2) ... 163s Setting up python3-cairo (1.25.1-2) ... 163s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ... 163s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 167s Setting up python3-rlpycairo (0.3.0-3) ... 167s Setting up python3-nanomath (1.2.1+ds-1) ... 167s Setting up python3-reportlab (4.1.0-1) ... 167s Processing triggers for libc-bin (2.39-0ubuntu6) ... 167s Processing triggers for systemd (255.2-3ubuntu2) ... 168s Processing triggers for man-db (2.12.0-3) ... 169s Processing triggers for sgml-base (1.31) ... 169s Setting up w3c-sgml-lib (1.3-3) ... 193s Setting up python3-biopython (1.81+dfsg-3) ... 194s Setting up python3-nanoget (1.19.3-1) ... 194s Setting up autopkgtest-satdep (0) ... 198s (Reading database ... 80563 files and directories currently installed.) 198s Removing autopkgtest-satdep (0) ... 199s autopkgtest [17:12:28]: test run-unit-test: [----------------------- 206s Pass 206s autopkgtest [17:12:35]: test run-unit-test: -----------------------] 207s autopkgtest [17:12:36]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 207s run-unit-test PASS 207s autopkgtest [17:12:36]: @@@@@@@@@@@@@@@@@@@@ summary 207s run-unit-test PASS 218s Creating nova instance adt-noble-arm64-python-nanoget-20240324-170909-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 943dd583-2042-4622-b4ce-bdf10ad153ac)...