0s autopkgtest [17:12:02]: starting date and time: 2024-03-24 17:12:02+0000 0s autopkgtest [17:12:02]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [17:12:02]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7tmwxgqz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:netcdf4-python,src:curl,src:gnutls28,src:hdf5,src:libpsl,src:netcdf,src:nettle,src:openssl,src:orthanc-python --apt-upgrade python-h5netcdf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=netcdf4-python/1.6.5-1build2 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu3 libpsl/0.21.2-1.1 netcdf/1:4.9.2-5ubuntu3 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-14.secgroup --name adt-noble-arm64-python-h5netcdf-20240324-171201-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 80s autopkgtest [17:13:22]: testbed dpkg architecture: arm64 80s autopkgtest [17:13:22]: testbed apt version: 2.7.12 80s autopkgtest [17:13:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 81s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 81s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 84s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 84s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 84s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 84s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 84s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 84s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 84s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 84s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 85s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 85s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 85s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 86s Fetched 9850 kB in 5s (2166 kB/s) 86s Reading package lists... 89s Reading package lists... 90s Building dependency tree... 90s Reading state information... 91s Calculating upgrade... 91s The following packages will be REMOVED: 91s libssl3 91s The following NEW packages will be installed: 91s libssl3t64 91s The following packages have been kept back: 91s curl 91s The following packages will be upgraded: 91s openssl 92s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 92s Need to get 2777 kB of archives. 92s After this operation, 139 kB of additional disk space will be used. 92s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 92s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 93s Fetched 2777 kB in 1s (3765 kB/s) 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74819 files and directories currently installed.) 93s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 93s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 93s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 93s wget depends on libssl3 (>= 3.0.0). 93s u-boot-tools depends on libssl3 (>= 3.0.0). 93s tnftp depends on libssl3 (>= 3.0.0). 93s tcpdump depends on libssl3 (>= 3.0.0). 93s systemd-resolved depends on libssl3 (>= 3.0.0). 93s systemd depends on libssl3 (>= 3.0.0). 93s sudo depends on libssl3 (>= 3.0.0). 93s sbsigntool depends on libssl3 (>= 3.0.0). 93s rsync depends on libssl3 (>= 3.0.0). 93s python3-cryptography depends on libssl3 (>= 3.0.0). 93s openssh-server depends on libssl3 (>= 3.0.10). 93s openssh-client depends on libssl3 (>= 3.0.10). 93s mtd-utils depends on libssl3 (>= 3.0.0). 93s mokutil depends on libssl3 (>= 3.0.0). 93s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 93s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 93s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 93s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 93s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 93s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 93s libnvme1 depends on libssl3 (>= 3.0.0). 93s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 93s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 93s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 93s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 93s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 93s kmod depends on libssl3 (>= 3.0.0). 93s dhcpcd-base depends on libssl3 (>= 3.0.0). 93s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 93s 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74819 files and directories currently installed.) 93s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 94s Selecting previously unselected package libssl3t64:arm64. 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74808 files and directories currently installed.) 94s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 94s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 94s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 94s Setting up openssl (3.0.13-0ubuntu2) ... 94s Processing triggers for man-db (2.12.0-3) ... 94s Processing triggers for libc-bin (2.39-0ubuntu6) ... 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 96s sh: Attempting to set up Debian/Ubuntu apt sources automatically 96s Reading package lists...sh: Distribution appears to be Ubuntu 97s 97s Building dependency tree... 97s Reading state information... 98s eatmydata is already the newest version (131-1). 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s dbus is already the newest version (1.14.10-4ubuntu1). 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s rng-tools-debian is already the newest version (2.4). 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s The following packages will be REMOVED: 101s cloud-init* python3-configobj* python3-debconf* 101s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 101s After this operation, 3256 kB disk space will be freed. 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74821 files and directories currently installed.) 101s Removing cloud-init (24.1.2-0ubuntu1) ... 102s Removing python3-configobj (5.0.8-3) ... 102s Removing python3-debconf (1.5.86) ... 102s Processing triggers for man-db (2.12.0-3) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74432 files and directories currently installed.) 103s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 103s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 103s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 103s invoke-rc.d: policy-rc.d denied execution of try-restart. 103s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s linux-generic is already the newest version (6.8.0-11.11+1). 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 105s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 105s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 107s Reading package lists... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Calculating upgrade... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s autopkgtest [17:13:51]: rebooting testbed after setup commands that affected boot 136s autopkgtest [17:14:18]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 139s autopkgtest [17:14:21]: @@@@@@@@@@@@@@@@@@@@ apt-source python-h5netcdf 143s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-h5netcdf 1.3.0-1 (dsc) [2405 B] 143s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-h5netcdf 1.3.0-1 (tar) [57.8 kB] 143s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-h5netcdf 1.3.0-1 (diff) [4476 B] 143s gpgv: Signature made Thu Nov 30 11:03:50 2023 UTC 143s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 143s gpgv: Can't check signature: No public key 143s dpkg-source: warning: cannot verify inline signature for ./python-h5netcdf_1.3.0-1.dsc: no acceptable signature found 143s autopkgtest [17:14:25]: testing package python-h5netcdf version 1.3.0-1 143s autopkgtest [17:14:25]: build not needed 144s autopkgtest [17:14:26]: test command1: preparing testbed 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Starting pkgProblemResolver with broken count: 0 148s Starting 2 pkgProblemResolver with broken count: 0 148s Done 148s The following additional packages will be installed: 148s libaec0 libblas3 libgfortran5 libhdf5-103-1 libhdf5-hl-100 libjs-jquery 148s libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 libnetcdf19 148s libpython3.11-minimal libpython3.11-stdlib libsz2 python-h5netcdf-doc 148s python3-all python3-cftime python3-distutils python3-h5netcdf python3-h5py 148s python3-h5py-serial python3-iniconfig python3-lib2to3 python3-netcdf4 148s python3-numpy python3-packaging python3-pluggy python3-pytest python3.11 148s python3.11-minimal 148s Suggested packages: 148s python-h5py-doc gcc gfortran python3-dev python3.11-venv python3.11-doc 148s binfmt-support 148s Recommended packages: 148s javascript-common 148s The following NEW packages will be installed: 148s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1 148s libhdf5-hl-100 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 148s liblzf1 libnetcdf19 libpython3.11-minimal libpython3.11-stdlib libsz2 148s python-h5netcdf-doc python3-all python3-cftime python3-distutils 148s python3-h5netcdf python3-h5py python3-h5py-serial python3-iniconfig 148s python3-lib2to3 python3-netcdf4 python3-numpy python3-packaging 148s python3-pluggy python3-pytest python3.11 python3.11-minimal 148s 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. 148s Need to get 19.7 MB/19.7 MB of archives. 148s After this operation, 85.0 MB of additional disk space will be used. 148s Get:1 /tmp/autopkgtest.N1IolF/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [736 B] 148s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB] 149s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB] 149s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB] 149s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB] 149s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 149s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 149s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 149s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 149s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 149s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 149s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 149s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 149s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-4 [149 kB] 149s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 149s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 149s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 149s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 python-h5netcdf-doc all 1.3.0-1 [1343 kB] 149s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB] 149s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB] 149s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B] 149s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 149s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cftime arm64 1.6.3-1build1 [323 kB] 149s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu1 [1462 kB] 149s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5py all 3.10.0-1ubuntu1 [7970 B] 149s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 149s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5netcdf all 1.3.0-1 [41.4 kB] 149s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 149s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-netcdf4 arm64 1.6.5-1build1 [803 kB] 149s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB] 149s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB] 150s Fetched 19.7 MB in 1s (18.0 MB/s) 150s Selecting previously unselected package libpython3.11-minimal:arm64. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74377 files and directories currently installed.) 150s Preparing to unpack .../00-libpython3.11-minimal_3.11.8-1_arm64.deb ... 150s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... 150s Selecting previously unselected package python3.11-minimal. 150s Preparing to unpack .../01-python3.11-minimal_3.11.8-1_arm64.deb ... 150s Unpacking python3.11-minimal (3.11.8-1) ... 150s Selecting previously unselected package libpython3.11-stdlib:arm64. 150s Preparing to unpack .../02-libpython3.11-stdlib_3.11.8-1_arm64.deb ... 150s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ... 151s Selecting previously unselected package python3.11. 151s Preparing to unpack .../03-python3.11_3.11.8-1_arm64.deb ... 151s Unpacking python3.11 (3.11.8-1) ... 151s Selecting previously unselected package libaec0:arm64. 151s Preparing to unpack .../04-libaec0_1.1.2-1_arm64.deb ... 151s Unpacking libaec0:arm64 (1.1.2-1) ... 151s Selecting previously unselected package libblas3:arm64. 151s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ... 151s Unpacking libblas3:arm64 (3.12.0-3) ... 151s Selecting previously unselected package libgfortran5:arm64. 151s Preparing to unpack .../06-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 151s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 151s Selecting previously unselected package libsz2:arm64. 151s Preparing to unpack .../07-libsz2_1.1.2-1_arm64.deb ... 151s Unpacking libsz2:arm64 (1.1.2-1) ... 151s Selecting previously unselected package libhdf5-103-1:arm64. 151s Preparing to unpack .../08-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 151s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 151s Selecting previously unselected package libhdf5-hl-100:arm64. 151s Preparing to unpack .../09-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 151s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 151s Selecting previously unselected package libjs-jquery. 151s Preparing to unpack .../10-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 151s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 151s Selecting previously unselected package libjs-underscore. 151s Preparing to unpack .../11-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 151s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 151s Selecting previously unselected package libjs-sphinxdoc. 151s Preparing to unpack .../12-libjs-sphinxdoc_7.2.6-4_all.deb ... 151s Unpacking libjs-sphinxdoc (7.2.6-4) ... 151s Selecting previously unselected package liblapack3:arm64. 151s Preparing to unpack .../13-liblapack3_3.12.0-3_arm64.deb ... 151s Unpacking liblapack3:arm64 (3.12.0-3) ... 151s Selecting previously unselected package liblzf1:arm64. 151s Preparing to unpack .../14-liblzf1_3.6-4_arm64.deb ... 151s Unpacking liblzf1:arm64 (3.6-4) ... 151s Selecting previously unselected package libnetcdf19:arm64. 151s Preparing to unpack .../15-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 151s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 151s Selecting previously unselected package python-h5netcdf-doc. 152s Preparing to unpack .../16-python-h5netcdf-doc_1.3.0-1_all.deb ... 152s Unpacking python-h5netcdf-doc (1.3.0-1) ... 152s Selecting previously unselected package python3-lib2to3. 152s Preparing to unpack .../17-python3-lib2to3_3.11.5-1_all.deb ... 152s Unpacking python3-lib2to3 (3.11.5-1) ... 152s Selecting previously unselected package python3-distutils. 152s Preparing to unpack .../18-python3-distutils_3.11.5-1_all.deb ... 152s Unpacking python3-distutils (3.11.5-1) ... 152s Selecting previously unselected package python3-all. 152s Preparing to unpack .../19-python3-all_3.12.1-0ubuntu2_arm64.deb ... 152s Unpacking python3-all (3.12.1-0ubuntu2) ... 152s Selecting previously unselected package python3-numpy. 152s Preparing to unpack .../20-python3-numpy_1%3a1.24.2-2_arm64.deb ... 152s Unpacking python3-numpy (1:1.24.2-2) ... 152s Selecting previously unselected package python3-cftime. 152s Preparing to unpack .../21-python3-cftime_1.6.3-1build1_arm64.deb ... 152s Unpacking python3-cftime (1.6.3-1build1) ... 152s Selecting previously unselected package python3-h5py-serial. 152s Preparing to unpack .../22-python3-h5py-serial_3.10.0-1ubuntu1_arm64.deb ... 152s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ... 152s Selecting previously unselected package python3-h5py. 152s Preparing to unpack .../23-python3-h5py_3.10.0-1ubuntu1_all.deb ... 152s Unpacking python3-h5py (3.10.0-1ubuntu1) ... 152s Selecting previously unselected package python3-packaging. 152s Preparing to unpack .../24-python3-packaging_23.2-1_all.deb ... 152s Unpacking python3-packaging (23.2-1) ... 152s Selecting previously unselected package python3-h5netcdf. 152s Preparing to unpack .../25-python3-h5netcdf_1.3.0-1_all.deb ... 152s Unpacking python3-h5netcdf (1.3.0-1) ... 152s Selecting previously unselected package python3-iniconfig. 152s Preparing to unpack .../26-python3-iniconfig_1.1.1-2_all.deb ... 152s Unpacking python3-iniconfig (1.1.1-2) ... 152s Selecting previously unselected package python3-netcdf4. 152s Preparing to unpack .../27-python3-netcdf4_1.6.5-1build1_arm64.deb ... 152s Unpacking python3-netcdf4 (1.6.5-1build1) ... 153s Selecting previously unselected package python3-pluggy. 153s Preparing to unpack .../28-python3-pluggy_1.4.0-1_all.deb ... 153s Unpacking python3-pluggy (1.4.0-1) ... 153s Selecting previously unselected package python3-pytest. 153s Preparing to unpack .../29-python3-pytest_7.4.4-1_all.deb ... 153s Unpacking python3-pytest (7.4.4-1) ... 153s Selecting previously unselected package autopkgtest-satdep. 153s Preparing to unpack .../30-1-autopkgtest-satdep.deb ... 153s Unpacking autopkgtest-satdep (0) ... 153s Setting up python3-iniconfig (1.1.1-2) ... 153s Setting up libaec0:arm64 (1.1.2-1) ... 153s Setting up libblas3:arm64 (3.12.0-3) ... 153s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 153s Setting up python3-packaging (23.2-1) ... 153s Setting up liblzf1:arm64 (3.6-4) ... 153s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 153s Setting up python3-pluggy (1.4.0-1) ... 153s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... 153s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 153s Setting up python3-lib2to3 (3.11.5-1) ... 154s Setting up libsz2:arm64 (1.1.2-1) ... 154s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 154s Setting up python3-distutils (3.11.5-1) ... 154s python3.12: can't get files for byte-compilation 154s Setting up python3.11-minimal (3.11.8-1) ... 155s Setting up liblapack3:arm64 (3.12.0-3) ... 155s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 155s Setting up python3-pytest (7.4.4-1) ... 155s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... 155s Setting up python3-all (3.12.1-0ubuntu2) ... 155s Setting up libjs-sphinxdoc (7.2.6-4) ... 155s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 155s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 155s Setting up python3.11 (3.11.8-1) ... 156s Setting up python-h5netcdf-doc (1.3.0-1) ... 156s Setting up python3-numpy (1:1.24.2-2) ... 159s Setting up libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 159s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ... 159s Setting up python3-h5py (3.10.0-1ubuntu1) ... 160s Setting up python3-cftime (1.6.3-1build1) ... 160s Setting up python3-netcdf4 (1.6.5-1build1) ... 160s Setting up python3-h5netcdf (1.3.0-1) ... 160s Setting up autopkgtest-satdep (0) ... 160s Processing triggers for systemd (255.2-3ubuntu2) ... 160s Processing triggers for man-db (2.12.0-3) ... 162s Processing triggers for libc-bin (2.39-0ubuntu6) ... 166s (Reading database ... 76868 files and directories currently installed.) 166s Removing autopkgtest-satdep (0) ... 166s autopkgtest [17:14:48]: test command1: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests ; done 166s autopkgtest [17:14:48]: test command1: [----------------------- 167s Testing with python3.12: 167s ============================= test session starts ============================== 167s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3.12 167s cachedir: .pytest_cache 167s rootdir: /tmp/autopkgtest.N1IolF/autopkgtest_tmp/tests 167s configfile: pytest.ini 168s collecting ... collected 101 items 168s 168s tests/test_h5netcdf.py::test_write_legacyapi_read_netCDF4 PASSED [ 0%] 168s tests/test_h5netcdf.py::test_roundtrip_h5netcdf_legacyapi PASSED [ 1%] 169s tests/test_h5netcdf.py::test_write_netCDF4_read_legacyapi PASSED [ 2%] 169s tests/test_h5netcdf.py::test_write_h5netcdf_read_legacyapi PASSED [ 3%] 169s tests/test_h5netcdf.py::test_write_h5netcdf_read_netCDF4 PASSED [ 4%] 169s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-True] PASSED [ 5%] 169s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-False] PASSED [ 6%] 169s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5:/testfile-True] SKIPPED [ 7%] 169s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5:/testfile-False] SKIPPED [ 8%] 169s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[True] PASSED [ 9%] 169s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[False] PASSED [ 10%] 169s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[True] PASSED [ 11%] 169s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[False] PASSED [ 12%] 169s tests/test_h5netcdf.py::test_fileobj[True] PASSED [ 13%] 169s tests/test_h5netcdf.py::test_fileobj[False] PASSED [ 14%] 169s tests/test_h5netcdf.py::test_repr[testfile.nc] PASSED [ 15%] 169s tests/test_h5netcdf.py::test_repr[hdf5:/testfile] SKIPPED (h5pyd pac...) [ 16%] 169s tests/test_h5netcdf.py::test_attrs_api[testfile.nc] PASSED [ 17%] 169s tests/test_h5netcdf.py::test_attrs_api[hdf5:/testfile] SKIPPED (h5py...) [ 18%] 169s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[testfile.nc] PASSED [ 19%] 169s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[hdf5:/testfile] SKIPPED [ 20%] 169s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[testfile.nc] PASSED [ 21%] 169s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[hdf5:/testfile] SKIPPED [ 22%] 169s tests/test_h5netcdf.py::test_error_handling[testfile.nc] PASSED [ 23%] 169s tests/test_h5netcdf.py::test_error_handling[hdf5:/testfile] SKIPPED [ 24%] 170s tests/test_h5netcdf.py::test_decode_string_error[testfile.nc] PASSED [ 25%] 170s tests/test_h5netcdf.py::test_decode_string_error[hdf5:/testfile] SKIPPED [ 26%] 170s tests/test_h5netcdf.py::test_invalid_netcdf4[testfile.nc] PASSED [ 27%] 170s tests/test_h5netcdf.py::test_invalid_netcdf4[hdf5:/testfile] SKIPPED [ 28%] 170s tests/test_h5netcdf.py::test_fake_phony_dims[testfile.nc] PASSED [ 29%] 170s tests/test_h5netcdf.py::test_fake_phony_dims[hdf5:/testfile] SKIPPED [ 30%] 170s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[testfile.nc] PASSED [ 31%] 170s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[hdf5:/testfile] SKIPPED [ 32%] 170s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[testfile.nc] PASSED [ 33%] 170s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[hdf5:/testfile] SKIPPED [ 34%] 170s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[testfile.nc] PASSED [ 35%] 170s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[hdf5:/testfile] SKIPPED [ 36%] 170s tests/test_h5netcdf.py::test_Netcdf4Dimid PASSED [ 37%] 170s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[True] PASSED [ 38%] 170s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[False] PASSED [ 39%] 170s tests/test_h5netcdf.py::test_nc_properties_new[testfile.nc] PASSED [ 40%] 170s tests/test_h5netcdf.py::test_nc_properties_new[hdf5:/testfile] SKIPPED [ 41%] 170s tests/test_h5netcdf.py::test_failed_read_open_and_clean_delete PASSED [ 42%] 170s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[testfile.nc] PASSED [ 43%] 170s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[hdf5:/testfile] SKIPPED [ 44%] 170s tests/test_h5netcdf.py::test_invalid_netcdf_error[testfile.nc] PASSED [ 45%] 170s tests/test_h5netcdf.py::test_invalid_netcdf_error[hdf5:/testfile] SKIPPED [ 46%] 170s tests/test_h5netcdf.py::test_invalid_netcdf_okay[testfile.nc] PASSED [ 47%] 170s tests/test_h5netcdf.py::test_invalid_netcdf_okay[hdf5:/testfile] SKIPPED [ 48%] 170s tests/test_h5netcdf.py::test_invalid_netcdf_overwrite_valid PASSED [ 49%] 170s tests/test_h5netcdf.py::test_reopen_file_different_dimension_sizes PASSED [ 50%] 170s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[testfile.nc] PASSED [ 51%] 170s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[hdf5:/testfile] SKIPPED [ 52%] 170s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[testfile.nc] PASSED [ 53%] 170s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[hdf5:/testfile] SKIPPED [ 54%] 170s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[testfile.nc] PASSED [ 55%] 170s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[hdf5:/testfile] SKIPPED [ 56%] 170s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[testfile.nc] PASSED [ 57%] 170s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[hdf5:/testfile] SKIPPED [ 58%] 170s tests/test_h5netcdf.py::test_c_api_can_read_unlimited_dimensions PASSED [ 59%] 170s tests/test_h5netcdf.py::test_reading_unlimited_dimensions_created_with_c_api PASSED [ 60%] 170s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[testfile.nc] PASSED [ 61%] 170s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[hdf5:/testfile] SKIPPED [ 62%] 170s tests/test_h5netcdf.py::test_reading_special_datatype_created_with_c_api PASSED [ 63%] 170s tests/test_h5netcdf.py::test_nc4_non_coord PASSED [ 64%] 170s tests/test_h5netcdf.py::test_overwrite_existing_file PASSED [ 65%] 170s tests/test_h5netcdf.py::test_scales_on_append PASSED [ 66%] 170s tests/test_h5netcdf.py::test_create_attach_scales_netcdf4 PASSED [ 67%] 170s tests/test_h5netcdf.py::test_create_attach_scales_legacyapi PASSED [ 68%] 170s tests/test_h5netcdf.py::test_detach_scale PASSED [ 69%] 170s tests/test_h5netcdf.py::test_is_scale PASSED [ 70%] 170s tests/test_h5netcdf.py::test_get_dim_scale_refs PASSED [ 71%] 170s tests/test_h5netcdf.py::test_dimensions[read_write_matrix0] PASSED [ 72%] 170s tests/test_h5netcdf.py::test_dimensions[read_write_matrix1] PASSED [ 73%] 170s tests/test_h5netcdf.py::test_dimensions[read_write_matrix2] PASSED [ 74%] 170s tests/test_h5netcdf.py::test_dimensions[read_write_matrix3] PASSED [ 75%] 170s tests/test_h5netcdf.py::test_dimensions[read_write_matrix4] PASSED [ 76%] 170s tests/test_h5netcdf.py::test_dimensions[read_write_matrix5] PASSED [ 77%] 171s tests/test_h5netcdf.py::test_dimensions[read_write_matrix6] PASSED [ 78%] 171s tests/test_h5netcdf.py::test_dimensions[read_write_matrix7] PASSED [ 79%] 171s tests/test_h5netcdf.py::test_dimensions[read_write_matrix8] PASSED [ 80%] 171s tests/test_h5netcdf.py::test_no_circular_references PASSED [ 81%] 171s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[netCDF4] PASSED [ 82%] 171s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[h5netcdf.legacyapi] PASSED [ 83%] 171s tests/test_h5netcdf.py::test_creation_with_h5netcdf_edit_with_netcdf4 PASSED [ 84%] 171s tests/test_h5netcdf.py::test_track_order_specification PASSED [ 85%] 171s tests/test_h5netcdf.py::test_more_than_7_attr_creation PASSED [ 86%] 171s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[False] PASSED [ 87%] 171s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[True] PASSED [ 88%] 171s tests/test_h5netcdf.py::test_group_names PASSED [ 89%] 171s tests/test_h5netcdf.py::test_legacyapi_endianess PASSED [ 90%] 171s tests/test_h5netcdf.py::test_bool_slicing_length_one_dim PASSED [ 91%] 171s tests/test_h5netcdf.py::test_fancy_indexing PASSED [ 92%] 171s tests/test_h5netcdf.py::test_h5py_chunking PASSED [ 93%] 171s tests/test_h5netcdf.py::test_h5netcdf_chunking PASSED [ 94%] 171s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error PASSED [ 95%] 171s tests/test_h5netcdf.py::test_dimensions_in_parent_groups PASSED [ 96%] 171s tests/test_h5netcdf.py::test_array_attributes PASSED [ 97%] 171s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[True] PASSED [ 98%] 171s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[False] PASSED [ 99%] 208s tests/test_h5netcdf.py::test_ros3 PASSED [100%] 208s 208s ======================= 79 passed, 22 skipped in 40.27s ======================== 208s autopkgtest [17:15:30]: test command1: -----------------------] 209s command1 PASS 209s autopkgtest [17:15:31]: test command1: - - - - - - - - - - results - - - - - - - - - - 209s autopkgtest [17:15:31]: @@@@@@@@@@@@@@@@@@@@ summary 209s command1 PASS 222s Creating nova instance adt-noble-arm64-python-h5netcdf-20240324-171201-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 943dd583-2042-4622-b4ce-bdf10ad153ac)...