0s autopkgtest [00:49:28]: starting date and time: 2024-03-24 00:49:28+0000 0s autopkgtest [00:49:28]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [00:49:28]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0j90iil5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sphinx --apt-upgrade python-h5netcdf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-7.secgroup --name adt-noble-arm64-python-h5netcdf-20240324-004928-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 293s autopkgtest [00:54:21]: testbed dpkg architecture: arm64 294s autopkgtest [00:54:22]: testbed apt version: 2.7.12 294s autopkgtest [00:54:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 296s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 298s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3972 kB] 299s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 299s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 299s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 300s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [707 kB] 300s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 300s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 300s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 300s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4370 kB] 302s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 302s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [69.8 kB] 302s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 327s Fetched 9838 kB in 14s (725 kB/s) 329s Reading package lists... 344s Reading package lists... 347s Building dependency tree... 347s Reading state information... 351s Calculating upgrade... 355s The following packages will be upgraded: 355s fonts-ubuntu-console libbsd0 libc-bin libc6 locales 356s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 356s Need to get 7658 kB of archives. 356s After this operation, 2048 B of additional disk space will be used. 356s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libc6 arm64 2.39-0ubuntu6 [2776 kB] 357s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-bin arm64 2.39-0ubuntu6 [591 kB] 357s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libbsd0 arm64 0.12.1-1 [41.0 kB] 357s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 locales all 2.39-0ubuntu6 [4232 kB] 357s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 360s Preconfiguring packages ... 362s Fetched 7658 kB in 2s (4207 kB/s) 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 365s Preparing to unpack .../libc6_2.39-0ubuntu6_arm64.deb ... 367s Unpacking libc6:arm64 (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 370s Setting up libc6:arm64 (2.39-0ubuntu6) ... 376s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 376s Preparing to unpack .../libc-bin_2.39-0ubuntu6_arm64.deb ... 376s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 376s Setting up libc-bin (2.39-0ubuntu6) ... 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 377s Preparing to unpack .../libbsd0_0.12.1-1_arm64.deb ... 377s Unpacking libbsd0:arm64 (0.12.1-1) over (0.11.8-1) ... 377s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 377s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 382s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 382s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 383s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 383s Setting up locales (2.39-0ubuntu6) ... 388s Generating locales (this might take a while)... 420s en_US.UTF-8... done 420s Generation complete. 420s Setting up libbsd0:arm64 (0.12.1-1) ... 420s Processing triggers for man-db (2.12.0-3) ... 427s Processing triggers for libc-bin (2.39-0ubuntu6) ... 428s Reading package lists... 430s Building dependency tree... 430s Reading state information... 433s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 435s sh: Attempting to set up Debian/Ubuntu apt sources automatically 435s sh: Distribution appears to be Ubuntu 442s Reading package lists... 444s Building dependency tree... 444s Reading state information... 447s eatmydata is already the newest version (131-1). 447s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 447s Reading package lists... 449s Building dependency tree... 449s Reading state information... 453s dbus is already the newest version (1.14.10-4ubuntu1). 453s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 454s Reading package lists... 455s Building dependency tree... 455s Reading state information... 459s rng-tools-debian is already the newest version (2.4). 459s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 459s Reading package lists... 461s Building dependency tree... 461s Reading state information... 465s The following packages will be REMOVED: 465s cloud-init* python3-configobj* python3-debconf* 468s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 468s After this operation, 3256 kB disk space will be freed. 468s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 468s Removing cloud-init (24.1.2-0ubuntu1) ... 472s Removing python3-configobj (5.0.8-3) ... 473s Removing python3-debconf (1.5.86) ... 474s Processing triggers for man-db (2.12.0-3) ... 475s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75522 files and directories currently installed.) 475s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 482s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 482s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 483s invoke-rc.d: policy-rc.d denied execution of try-restart. 484s Reading package lists... 485s Building dependency tree... 485s Reading state information... 488s linux-generic is already the newest version (6.8.0-11.11+1). 488s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 489s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 489s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 489s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 507s Reading package lists... 508s Reading package lists... 509s Building dependency tree... 509s Reading state information... 512s Calculating upgrade... 514s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 514s Reading package lists... 515s Building dependency tree... 515s Reading state information... 518s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 519s autopkgtest [00:58:07]: rebooting testbed after setup commands that affected boot 693s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 726s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 742s autopkgtest [01:01:50]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 752s autopkgtest [01:02:00]: @@@@@@@@@@@@@@@@@@@@ apt-source python-h5netcdf 765s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-h5netcdf 1.3.0-1 (dsc) [2405 B] 765s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-h5netcdf 1.3.0-1 (tar) [57.8 kB] 765s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-h5netcdf 1.3.0-1 (diff) [4476 B] 770s gpgv: Signature made Thu Nov 30 11:03:50 2023 UTC 770s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 770s gpgv: Can't check signature: No public key 770s dpkg-source: warning: cannot verify inline signature for ./python-h5netcdf_1.3.0-1.dsc: no acceptable signature found 772s autopkgtest [01:02:20]: testing package python-h5netcdf version 1.3.0-1 773s autopkgtest [01:02:21]: build not needed 774s autopkgtest [01:02:22]: test command1: preparing testbed 786s Reading package lists... 788s Building dependency tree... 788s Reading state information... 791s Starting pkgProblemResolver with broken count: 0 792s Starting 2 pkgProblemResolver with broken count: 0 792s Done 798s The following additional packages will be installed: 798s libaec0 libblas3 libgfortran5 libhdf5-103-1 libhdf5-hl-100 libjs-jquery 798s libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 libnetcdf19 libsz2 798s python-h5netcdf-doc python3-all python3-cftime python3-h5netcdf python3-h5py 798s python3-h5py-serial python3-iniconfig python3-netcdf4 python3-numpy 798s python3-packaging python3-pluggy python3-pytest 798s Suggested packages: 798s python-h5py-doc gcc gfortran python3-dev 798s Recommended packages: 798s javascript-common 798s The following NEW packages will be installed: 798s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1 798s libhdf5-hl-100 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 798s liblzf1 libnetcdf19 libsz2 python-h5netcdf-doc python3-all python3-cftime 798s python3-h5netcdf python3-h5py python3-h5py-serial python3-iniconfig 798s python3-netcdf4 python3-numpy python3-packaging python3-pluggy 798s python3-pytest 799s 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. 799s Need to get 14.0 MB/14.1 MB of archives. 799s After this operation, 60.8 MB of additional disk space will be used. 799s Get:1 /tmp/autopkgtest.6h6eY7/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [736 B] 799s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 799s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 800s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 800s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 800s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 800s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 800s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 800s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 800s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-4 [149 kB] 800s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 801s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 801s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 801s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 python-h5netcdf-doc all 1.3.0-1 [1343 kB] 801s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B] 801s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 805s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cftime arm64 1.6.3-1build1 [323 kB] 805s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu1 [1462 kB] 805s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5py all 3.10.0-1ubuntu1 [7970 B] 805s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 805s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5netcdf all 1.3.0-1 [41.4 kB] 805s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 805s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-netcdf4 arm64 1.6.5-1build1 [803 kB] 805s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB] 805s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB] 811s Fetched 14.0 MB in 7s (2037 kB/s) 811s Selecting previously unselected package libaec0:arm64. 813s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75467 files and directories currently installed.) 813s Preparing to unpack .../00-libaec0_1.1.2-1_arm64.deb ... 813s Unpacking libaec0:arm64 (1.1.2-1) ... 814s Selecting previously unselected package libblas3:arm64. 814s Preparing to unpack .../01-libblas3_3.12.0-3_arm64.deb ... 814s Unpacking libblas3:arm64 (3.12.0-3) ... 814s Selecting previously unselected package libgfortran5:arm64. 814s Preparing to unpack .../02-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 814s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 816s Selecting previously unselected package libsz2:arm64. 816s Preparing to unpack .../03-libsz2_1.1.2-1_arm64.deb ... 816s Unpacking libsz2:arm64 (1.1.2-1) ... 816s Selecting previously unselected package libhdf5-103-1:arm64. 816s Preparing to unpack .../04-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 816s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 816s Selecting previously unselected package libhdf5-hl-100:arm64. 816s Preparing to unpack .../05-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 816s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 816s Selecting previously unselected package libjs-jquery. 816s Preparing to unpack .../06-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 816s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 816s Selecting previously unselected package libjs-underscore. 816s Preparing to unpack .../07-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 816s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 817s Selecting previously unselected package libjs-sphinxdoc. 817s Preparing to unpack .../08-libjs-sphinxdoc_7.2.6-4_all.deb ... 817s Unpacking libjs-sphinxdoc (7.2.6-4) ... 817s Selecting previously unselected package liblapack3:arm64. 817s Preparing to unpack .../09-liblapack3_3.12.0-3_arm64.deb ... 817s Unpacking liblapack3:arm64 (3.12.0-3) ... 817s Selecting previously unselected package liblzf1:arm64. 817s Preparing to unpack .../10-liblzf1_3.6-4_arm64.deb ... 817s Unpacking liblzf1:arm64 (3.6-4) ... 817s Selecting previously unselected package libnetcdf19:arm64. 818s Preparing to unpack .../11-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 818s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 818s Selecting previously unselected package python-h5netcdf-doc. 818s Preparing to unpack .../12-python-h5netcdf-doc_1.3.0-1_all.deb ... 818s Unpacking python-h5netcdf-doc (1.3.0-1) ... 818s Selecting previously unselected package python3-all. 818s Preparing to unpack .../13-python3-all_3.12.1-0ubuntu2_arm64.deb ... 818s Unpacking python3-all (3.12.1-0ubuntu2) ... 819s Selecting previously unselected package python3-numpy. 819s Preparing to unpack .../14-python3-numpy_1%3a1.24.2-2_arm64.deb ... 819s Unpacking python3-numpy (1:1.24.2-2) ... 823s Selecting previously unselected package python3-cftime. 823s Preparing to unpack .../15-python3-cftime_1.6.3-1build1_arm64.deb ... 823s Unpacking python3-cftime (1.6.3-1build1) ... 823s Selecting previously unselected package python3-h5py-serial. 823s Preparing to unpack .../16-python3-h5py-serial_3.10.0-1ubuntu1_arm64.deb ... 823s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ... 825s Selecting previously unselected package python3-h5py. 825s Preparing to unpack .../17-python3-h5py_3.10.0-1ubuntu1_all.deb ... 825s Unpacking python3-h5py (3.10.0-1ubuntu1) ... 825s Selecting previously unselected package python3-packaging. 825s Preparing to unpack .../18-python3-packaging_23.2-1_all.deb ... 825s Unpacking python3-packaging (23.2-1) ... 825s Selecting previously unselected package python3-h5netcdf. 825s Preparing to unpack .../19-python3-h5netcdf_1.3.0-1_all.deb ... 825s Unpacking python3-h5netcdf (1.3.0-1) ... 825s Selecting previously unselected package python3-iniconfig. 825s Preparing to unpack .../20-python3-iniconfig_1.1.1-2_all.deb ... 825s Unpacking python3-iniconfig (1.1.1-2) ... 826s Selecting previously unselected package python3-netcdf4. 826s Preparing to unpack .../21-python3-netcdf4_1.6.5-1build1_arm64.deb ... 826s Unpacking python3-netcdf4 (1.6.5-1build1) ... 826s Selecting previously unselected package python3-pluggy. 826s Preparing to unpack .../22-python3-pluggy_1.4.0-1_all.deb ... 826s Unpacking python3-pluggy (1.4.0-1) ... 827s Selecting previously unselected package python3-pytest. 827s Preparing to unpack .../23-python3-pytest_7.4.4-1_all.deb ... 827s Unpacking python3-pytest (7.4.4-1) ... 827s Selecting previously unselected package autopkgtest-satdep. 827s Preparing to unpack .../24-1-autopkgtest-satdep.deb ... 827s Unpacking autopkgtest-satdep (0) ... 827s Setting up python3-iniconfig (1.1.1-2) ... 829s Setting up python3-all (3.12.1-0ubuntu2) ... 829s Setting up libaec0:arm64 (1.1.2-1) ... 829s Setting up libblas3:arm64 (3.12.0-3) ... 829s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 829s Setting up python3-packaging (23.2-1) ... 831s Setting up liblzf1:arm64 (3.6-4) ... 831s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 831s Setting up python3-pluggy (1.4.0-1) ... 832s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 832s Setting up libsz2:arm64 (1.1.2-1) ... 832s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 832s Setting up liblapack3:arm64 (3.12.0-3) ... 832s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 832s Setting up python3-pytest (7.4.4-1) ... 834s Setting up python3-numpy (1:1.24.2-2) ... 855s Setting up libjs-sphinxdoc (7.2.6-4) ... 855s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 855s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 855s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ... 857s Setting up python-h5netcdf-doc (1.3.0-1) ... 857s Setting up python3-h5py (3.10.0-1ubuntu1) ... 859s Setting up python3-cftime (1.6.3-1build1) ... 860s Setting up libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 860s Setting up python3-netcdf4 (1.6.5-1build1) ... 861s Setting up python3-h5netcdf (1.3.0-1) ... 863s Setting up autopkgtest-satdep (0) ... 863s Processing triggers for man-db (2.12.0-3) ... 866s Processing triggers for libc-bin (2.39-0ubuntu6) ... 886s (Reading database ... 77047 files and directories currently installed.) 886s Removing autopkgtest-satdep (0) ... 889s autopkgtest [01:04:17]: test command1: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests ; done 889s autopkgtest [01:04:17]: test command1: [----------------------- 890s Testing with python3.12: 893s ============================= test session starts ============================== 893s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3.12 893s cachedir: .pytest_cache 893s rootdir: /tmp/autopkgtest.6h6eY7/autopkgtest_tmp/tests 893s configfile: pytest.ini 898s collecting ... collected 101 items 898s 899s tests/test_h5netcdf.py::test_write_legacyapi_read_netCDF4 PASSED [ 0%] 900s tests/test_h5netcdf.py::test_roundtrip_h5netcdf_legacyapi PASSED [ 1%] 900s tests/test_h5netcdf.py::test_write_netCDF4_read_legacyapi PASSED [ 2%] 900s tests/test_h5netcdf.py::test_write_h5netcdf_read_legacyapi PASSED [ 3%] 901s tests/test_h5netcdf.py::test_write_h5netcdf_read_netCDF4 PASSED [ 4%] 901s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-True] PASSED [ 5%] 902s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-False] PASSED [ 6%] 902s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5:/testfile-True] SKIPPED [ 7%] 902s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5:/testfile-False] SKIPPED [ 8%] 902s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[True] PASSED [ 9%] 903s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[False] PASSED [ 10%] 903s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[True] PASSED [ 11%] 904s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[False] PASSED [ 12%] 906s tests/test_h5netcdf.py::test_fileobj[True] PASSED [ 13%] 907s tests/test_h5netcdf.py::test_fileobj[False] PASSED [ 14%] 908s tests/test_h5netcdf.py::test_repr[testfile.nc] PASSED [ 15%] 908s tests/test_h5netcdf.py::test_repr[hdf5:/testfile] SKIPPED (h5pyd pac...) [ 16%] 908s tests/test_h5netcdf.py::test_attrs_api[testfile.nc] PASSED [ 17%] 908s tests/test_h5netcdf.py::test_attrs_api[hdf5:/testfile] SKIPPED (h5py...) [ 18%] 908s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[testfile.nc] PASSED [ 19%] 908s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[hdf5:/testfile] SKIPPED [ 20%] 909s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[testfile.nc] PASSED [ 21%] 909s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[hdf5:/testfile] SKIPPED [ 22%] 909s tests/test_h5netcdf.py::test_error_handling[testfile.nc] PASSED [ 23%] 909s tests/test_h5netcdf.py::test_error_handling[hdf5:/testfile] SKIPPED [ 24%] 909s tests/test_h5netcdf.py::test_decode_string_error[testfile.nc] PASSED [ 25%] 909s tests/test_h5netcdf.py::test_decode_string_error[hdf5:/testfile] SKIPPED [ 26%] 909s tests/test_h5netcdf.py::test_invalid_netcdf4[testfile.nc] PASSED [ 27%] 909s tests/test_h5netcdf.py::test_invalid_netcdf4[hdf5:/testfile] SKIPPED [ 28%] 910s tests/test_h5netcdf.py::test_fake_phony_dims[testfile.nc] PASSED [ 29%] 910s tests/test_h5netcdf.py::test_fake_phony_dims[hdf5:/testfile] SKIPPED [ 30%] 910s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[testfile.nc] PASSED [ 31%] 910s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[hdf5:/testfile] SKIPPED [ 32%] 910s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[testfile.nc] PASSED [ 33%] 910s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[hdf5:/testfile] SKIPPED [ 34%] 910s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[testfile.nc] PASSED [ 35%] 910s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[hdf5:/testfile] SKIPPED [ 36%] 910s tests/test_h5netcdf.py::test_Netcdf4Dimid PASSED [ 37%] 910s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[True] PASSED [ 38%] 910s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[False] PASSED [ 39%] 910s tests/test_h5netcdf.py::test_nc_properties_new[testfile.nc] PASSED [ 40%] 910s tests/test_h5netcdf.py::test_nc_properties_new[hdf5:/testfile] SKIPPED [ 41%] 911s tests/test_h5netcdf.py::test_failed_read_open_and_clean_delete PASSED [ 42%] 911s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[testfile.nc] PASSED [ 43%] 911s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[hdf5:/testfile] SKIPPED [ 44%] 911s tests/test_h5netcdf.py::test_invalid_netcdf_error[testfile.nc] PASSED [ 45%] 911s tests/test_h5netcdf.py::test_invalid_netcdf_error[hdf5:/testfile] SKIPPED [ 46%] 911s tests/test_h5netcdf.py::test_invalid_netcdf_okay[testfile.nc] PASSED [ 47%] 911s tests/test_h5netcdf.py::test_invalid_netcdf_okay[hdf5:/testfile] SKIPPED [ 48%] 912s tests/test_h5netcdf.py::test_invalid_netcdf_overwrite_valid PASSED [ 49%] 912s tests/test_h5netcdf.py::test_reopen_file_different_dimension_sizes PASSED [ 50%] 912s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[testfile.nc] PASSED [ 51%] 912s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[hdf5:/testfile] SKIPPED [ 52%] 912s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[testfile.nc] PASSED [ 53%] 912s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[hdf5:/testfile] SKIPPED [ 54%] 912s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[testfile.nc] PASSED [ 55%] 912s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[hdf5:/testfile] SKIPPED [ 56%] 913s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[testfile.nc] PASSED [ 57%] 913s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[hdf5:/testfile] SKIPPED [ 58%] 913s tests/test_h5netcdf.py::test_c_api_can_read_unlimited_dimensions PASSED [ 59%] 913s tests/test_h5netcdf.py::test_reading_unlimited_dimensions_created_with_c_api PASSED [ 60%] 913s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[testfile.nc] PASSED [ 61%] 913s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[hdf5:/testfile] SKIPPED [ 62%] 913s tests/test_h5netcdf.py::test_reading_special_datatype_created_with_c_api PASSED [ 63%] 914s tests/test_h5netcdf.py::test_nc4_non_coord PASSED [ 64%] 914s tests/test_h5netcdf.py::test_overwrite_existing_file PASSED [ 65%] 914s tests/test_h5netcdf.py::test_scales_on_append PASSED [ 66%] 914s tests/test_h5netcdf.py::test_create_attach_scales_netcdf4 PASSED [ 67%] 914s tests/test_h5netcdf.py::test_create_attach_scales_legacyapi PASSED [ 68%] 915s tests/test_h5netcdf.py::test_detach_scale PASSED [ 69%] 915s tests/test_h5netcdf.py::test_is_scale PASSED [ 70%] 915s tests/test_h5netcdf.py::test_get_dim_scale_refs PASSED [ 71%] 915s tests/test_h5netcdf.py::test_dimensions[read_write_matrix0] PASSED [ 72%] 916s tests/test_h5netcdf.py::test_dimensions[read_write_matrix1] PASSED [ 73%] 917s tests/test_h5netcdf.py::test_dimensions[read_write_matrix2] PASSED [ 74%] 918s tests/test_h5netcdf.py::test_dimensions[read_write_matrix3] PASSED [ 75%] 918s tests/test_h5netcdf.py::test_dimensions[read_write_matrix4] PASSED [ 76%] 919s tests/test_h5netcdf.py::test_dimensions[read_write_matrix5] PASSED [ 77%] 919s tests/test_h5netcdf.py::test_dimensions[read_write_matrix6] PASSED [ 78%] 921s tests/test_h5netcdf.py::test_dimensions[read_write_matrix7] PASSED [ 79%] 923s tests/test_h5netcdf.py::test_dimensions[read_write_matrix8] PASSED [ 80%] 923s tests/test_h5netcdf.py::test_no_circular_references PASSED [ 81%] 925s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[netCDF4] PASSED [ 82%] 927s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[h5netcdf.legacyapi] PASSED [ 83%] 927s tests/test_h5netcdf.py::test_creation_with_h5netcdf_edit_with_netcdf4 PASSED [ 84%] 928s tests/test_h5netcdf.py::test_track_order_specification PASSED [ 85%] 928s tests/test_h5netcdf.py::test_more_than_7_attr_creation PASSED [ 86%] 928s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[False] PASSED [ 87%] 928s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[True] PASSED [ 88%] 928s tests/test_h5netcdf.py::test_group_names PASSED [ 89%] 928s tests/test_h5netcdf.py::test_legacyapi_endianess PASSED [ 90%] 929s tests/test_h5netcdf.py::test_bool_slicing_length_one_dim PASSED [ 91%] 929s tests/test_h5netcdf.py::test_fancy_indexing PASSED [ 92%] 930s tests/test_h5netcdf.py::test_h5py_chunking PASSED [ 93%] 930s tests/test_h5netcdf.py::test_h5netcdf_chunking PASSED [ 94%] 930s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error PASSED [ 95%] 931s tests/test_h5netcdf.py::test_dimensions_in_parent_groups PASSED [ 96%] 931s tests/test_h5netcdf.py::test_array_attributes PASSED [ 97%] 932s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[True] PASSED [ 98%] 932s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[False] PASSED [ 99%] 970s tests/test_h5netcdf.py::test_ros3 PASSED [100%] 970s 970s ================== 79 passed, 22 skipped in 77.69s (0:01:17) =================== 972s autopkgtest [01:05:40]: test command1: -----------------------] 973s command1 PASS 973s autopkgtest [01:05:41]: test command1: - - - - - - - - - - results - - - - - - - - - - 974s autopkgtest [01:05:42]: @@@@@@@@@@@@@@@@@@@@ summary 974s command1 PASS 994s Creating nova instance adt-noble-arm64-python-h5netcdf-20240324-004928-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240322.img (UUID 30e11504-94c3-4021-bd9a-a4301970c682)...