0s autopkgtest [21:48:30]: starting date and time: 2024-03-13 21:48:30+0000 0s autopkgtest [21:48:30]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [21:48:30]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ahgcs8m3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:hdf5,src:openmpi,src:openssl,src:pmix --apt-upgrade python-h5netcdf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.10.0-1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu2 openmpi/4.1.6-5.1ubuntu3 openssl/3.0.13-0ubuntu1 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-9.secgroup --name adt-noble-arm64-python-h5netcdf-20240313-214830-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 84s autopkgtest [21:49:54]: testbed dpkg architecture: arm64 85s autopkgtest [21:49:55]: testbed apt version: 2.7.12 85s autopkgtest [21:49:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 85s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 85s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [450 kB] 86s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2818 kB] 86s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [42.3 kB] 86s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 86s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [603 kB] 86s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 86s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 86s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 86s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3218 kB] 86s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 86s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [42.3 kB] 86s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 88s Fetched 7327 kB in 2s (4015 kB/s) 89s Reading package lists... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s Calculating upgrade... 92s The following packages will be REMOVED: 92s libssl3 92s The following NEW packages will be installed: 92s libssl3t64 92s The following packages will be upgraded: 92s console-setup console-setup-linux keyboard-configuration openssl 92s 4 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 92s Need to get 4955 kB of archives. 92s After this operation, 74.8 kB of additional disk space will be used. 92s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 93s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 93s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 console-setup-linux all 1.226ubuntu1 [1880 kB] 93s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 console-setup all 1.226ubuntu1 [110 kB] 93s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 keyboard-configuration all 1.226ubuntu1 [212 kB] 93s Preconfiguring packages ... 94s Fetched 4955 kB in 1s (6296 kB/s) 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74759 files and directories currently installed.) 94s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 94s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 94s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 94s wget depends on libssl3 (>= 3.0.0). 94s u-boot-tools depends on libssl3 (>= 3.0.0). 94s tnftp depends on libssl3 (>= 3.0.0). 94s tcpdump depends on libssl3 (>= 3.0.0). 94s systemd-resolved depends on libssl3 (>= 3.0.0). 94s systemd depends on libssl3 (>= 3.0.0). 94s sudo depends on libssl3 (>= 3.0.0). 94s sbsigntool depends on libssl3 (>= 3.0.0). 94s rsync depends on libssl3 (>= 3.0.0). 94s python3-cryptography depends on libssl3 (>= 3.0.0). 94s openssh-server depends on libssl3 (>= 3.0.10). 94s openssh-client depends on libssl3 (>= 3.0.10). 94s mtd-utils depends on libssl3 (>= 3.0.0). 94s mokutil depends on libssl3 (>= 3.0.0). 94s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 94s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 94s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 94s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 94s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 94s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 94s libnvme1 depends on libssl3 (>= 3.0.0). 94s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 94s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 94s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 94s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 94s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 94s kmod depends on libssl3 (>= 3.0.0). 94s dhcpcd-base depends on libssl3 (>= 3.0.0). 94s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 94s 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74759 files and directories currently installed.) 94s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 94s Selecting previously unselected package libssl3t64:arm64. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74748 files and directories currently installed.) 95s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 95s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 95s Preparing to unpack .../console-setup-linux_1.226ubuntu1_all.deb ... 95s Unpacking console-setup-linux (1.226ubuntu1) over (1.223ubuntu2) ... 95s Preparing to unpack .../console-setup_1.226ubuntu1_all.deb ... 95s Unpacking console-setup (1.226ubuntu1) over (1.223ubuntu2) ... 95s Preparing to unpack .../keyboard-configuration_1.226ubuntu1_all.deb ... 95s Unpacking keyboard-configuration (1.226ubuntu1) over (1.223ubuntu2) ... 95s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 95s Setting up keyboard-configuration (1.226ubuntu1) ... 96s Your console font configuration will be updated the next time your system 96s boots. If you want to update it now, run 'setupcon' from a virtual console. 96s update-initramfs: deferring update (trigger activated) 96s Setting up openssl (3.0.13-0ubuntu1) ... 96s Setting up console-setup-linux (1.226ubuntu1) ... 97s Setting up console-setup (1.226ubuntu1) ... 98s update-initramfs: deferring update (trigger activated) 98s Processing triggers for man-db (2.12.0-3) ... 99s Processing triggers for libc-bin (2.39-0ubuntu2) ... 99s Processing triggers for initramfs-tools (0.142ubuntu20) ... 99s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 99s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 115s System running in EFI mode, skipping. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 118s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 118s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 118s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 119s Reading package lists... 119s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Calculating upgrade... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [21:50:33]: rebooting testbed after setup commands that affected boot 363s autopkgtest [21:54:33]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 365s autopkgtest [21:54:35]: @@@@@@@@@@@@@@@@@@@@ apt-source python-h5netcdf 368s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-h5netcdf 1.3.0-1 (dsc) [2405 B] 368s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-h5netcdf 1.3.0-1 (tar) [57.8 kB] 368s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-h5netcdf 1.3.0-1 (diff) [4476 B] 369s gpgv: Signature made Thu Nov 30 11:03:50 2023 UTC 369s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 369s gpgv: Can't check signature: No public key 369s dpkg-source: warning: cannot verify inline signature for ./python-h5netcdf_1.3.0-1.dsc: no acceptable signature found 369s autopkgtest [21:54:39]: testing package python-h5netcdf version 1.3.0-1 369s autopkgtest [21:54:39]: build not needed 369s autopkgtest [21:54:39]: test command1: preparing testbed 381s Reading package lists... 382s Building dependency tree... 382s Reading state information... 382s Starting pkgProblemResolver with broken count: 0 382s Starting 2 pkgProblemResolver with broken count: 0 382s Done 383s The following additional packages will be installed: 383s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 383s libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 libnetcdf19 383s libpython3.11-minimal libpython3.11-stdlib libsz2 python-h5netcdf-doc 383s python3-all python3-cftime python3-distutils python3-h5netcdf python3-h5py 383s python3-h5py-serial python3-iniconfig python3-lib2to3 python3-netcdf4 383s python3-numpy python3-packaging python3-pluggy python3-pytest python3.11 383s python3.11-minimal 383s Suggested packages: 383s python-h5py-doc gcc gfortran python3-dev python3.11-venv python3.11-doc 383s binfmt-support 383s Recommended packages: 383s javascript-common 383s The following NEW packages will be installed: 383s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 383s libhdf5-hl-100t64 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 383s liblzf1 libnetcdf19 libpython3.11-minimal libpython3.11-stdlib libsz2 383s python-h5netcdf-doc python3-all python3-cftime python3-distutils 383s python3-h5netcdf python3-h5py python3-h5py-serial python3-iniconfig 383s python3-lib2to3 python3-netcdf4 python3-numpy python3-packaging 383s python3-pluggy python3-pytest python3.11 python3.11-minimal 383s 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. 383s Need to get 19.2 MB/19.2 MB of archives. 383s After this operation, 81.1 MB of additional disk space will be used. 383s Get:1 /tmp/autopkgtest.bd562u/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [740 B] 383s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB] 384s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB] 384s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB] 384s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB] 384s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 384s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 384s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 384s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 384s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu2 [1192 kB] 384s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu2 [55.8 kB] 384s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 384s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 384s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-4 [149 kB] 384s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 384s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 384s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 384s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 python-h5netcdf-doc all 1.3.0-1 [1343 kB] 384s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB] 384s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB] 384s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B] 384s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 384s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cftime arm64 1.6.3-1build1 [323 kB] 384s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu2 [887 kB] 384s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-h5py all 3.10.0-1ubuntu2 [7980 B] 384s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 384s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5netcdf all 1.3.0-1 [41.4 kB] 384s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 384s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-netcdf4 arm64 1.6.5-1build1 [803 kB] 384s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB] 384s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB] 388s Fetched 19.2 MB in 2s (12.7 MB/s) 389s Selecting previously unselected package libpython3.11-minimal:arm64. 390s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 390s Preparing to unpack .../00-libpython3.11-minimal_3.11.8-1_arm64.deb ... 390s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... 390s Selecting previously unselected package python3.11-minimal. 390s Preparing to unpack .../01-python3.11-minimal_3.11.8-1_arm64.deb ... 390s Unpacking python3.11-minimal (3.11.8-1) ... 390s Selecting previously unselected package libpython3.11-stdlib:arm64. 391s Preparing to unpack .../02-libpython3.11-stdlib_3.11.8-1_arm64.deb ... 391s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ... 391s Selecting previously unselected package python3.11. 391s Preparing to unpack .../03-python3.11_3.11.8-1_arm64.deb ... 391s Unpacking python3.11 (3.11.8-1) ... 391s Selecting previously unselected package libaec0:arm64. 391s Preparing to unpack .../04-libaec0_1.1.2-1_arm64.deb ... 391s Unpacking libaec0:arm64 (1.1.2-1) ... 391s Selecting previously unselected package libblas3:arm64. 391s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ... 391s Unpacking libblas3:arm64 (3.12.0-3) ... 391s Selecting previously unselected package libgfortran5:arm64. 391s Preparing to unpack .../06-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 391s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 391s Selecting previously unselected package libsz2:arm64. 391s Preparing to unpack .../07-libsz2_1.1.2-1_arm64.deb ... 391s Unpacking libsz2:arm64 (1.1.2-1) ... 391s Selecting previously unselected package libhdf5-103-1t64:arm64. 391s Preparing to unpack .../08-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu2_arm64.deb ... 391s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu2) ... 392s Selecting previously unselected package libhdf5-hl-100t64:arm64. 392s Preparing to unpack .../09-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu2_arm64.deb ... 392s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu2) ... 392s Selecting previously unselected package libjs-jquery. 392s Preparing to unpack .../10-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 392s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 392s Selecting previously unselected package libjs-underscore. 392s Preparing to unpack .../11-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 392s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 392s Selecting previously unselected package libjs-sphinxdoc. 392s Preparing to unpack .../12-libjs-sphinxdoc_7.2.6-4_all.deb ... 392s Unpacking libjs-sphinxdoc (7.2.6-4) ... 392s Selecting previously unselected package liblapack3:arm64. 392s Preparing to unpack .../13-liblapack3_3.12.0-3_arm64.deb ... 392s Unpacking liblapack3:arm64 (3.12.0-3) ... 392s Selecting previously unselected package liblzf1:arm64. 392s Preparing to unpack .../14-liblzf1_3.6-4_arm64.deb ... 392s Unpacking liblzf1:arm64 (3.6-4) ... 392s Selecting previously unselected package libnetcdf19:arm64. 392s Preparing to unpack .../15-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 392s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 392s Selecting previously unselected package python-h5netcdf-doc. 392s Preparing to unpack .../16-python-h5netcdf-doc_1.3.0-1_all.deb ... 392s Unpacking python-h5netcdf-doc (1.3.0-1) ... 392s Selecting previously unselected package python3-lib2to3. 392s Preparing to unpack .../17-python3-lib2to3_3.11.5-1_all.deb ... 392s Unpacking python3-lib2to3 (3.11.5-1) ... 392s Selecting previously unselected package python3-distutils. 392s Preparing to unpack .../18-python3-distutils_3.11.5-1_all.deb ... 392s Unpacking python3-distutils (3.11.5-1) ... 392s Selecting previously unselected package python3-all. 392s Preparing to unpack .../19-python3-all_3.12.1-0ubuntu2_arm64.deb ... 392s Unpacking python3-all (3.12.1-0ubuntu2) ... 392s Selecting previously unselected package python3-numpy. 392s Preparing to unpack .../20-python3-numpy_1%3a1.24.2-2_arm64.deb ... 392s Unpacking python3-numpy (1:1.24.2-2) ... 393s Selecting previously unselected package python3-cftime. 393s Preparing to unpack .../21-python3-cftime_1.6.3-1build1_arm64.deb ... 393s Unpacking python3-cftime (1.6.3-1build1) ... 393s Selecting previously unselected package python3-h5py-serial. 393s Preparing to unpack .../22-python3-h5py-serial_3.10.0-1ubuntu2_arm64.deb ... 393s Unpacking python3-h5py-serial (3.10.0-1ubuntu2) ... 393s Selecting previously unselected package python3-h5py. 393s Preparing to unpack .../23-python3-h5py_3.10.0-1ubuntu2_all.deb ... 393s Unpacking python3-h5py (3.10.0-1ubuntu2) ... 393s Selecting previously unselected package python3-packaging. 393s Preparing to unpack .../24-python3-packaging_23.2-1_all.deb ... 393s Unpacking python3-packaging (23.2-1) ... 393s Selecting previously unselected package python3-h5netcdf. 393s Preparing to unpack .../25-python3-h5netcdf_1.3.0-1_all.deb ... 393s Unpacking python3-h5netcdf (1.3.0-1) ... 393s Selecting previously unselected package python3-iniconfig. 393s Preparing to unpack .../26-python3-iniconfig_1.1.1-2_all.deb ... 393s Unpacking python3-iniconfig (1.1.1-2) ... 393s Selecting previously unselected package python3-netcdf4. 393s Preparing to unpack .../27-python3-netcdf4_1.6.5-1build1_arm64.deb ... 393s Unpacking python3-netcdf4 (1.6.5-1build1) ... 393s Selecting previously unselected package python3-pluggy. 393s Preparing to unpack .../28-python3-pluggy_1.4.0-1_all.deb ... 393s Unpacking python3-pluggy (1.4.0-1) ... 393s Selecting previously unselected package python3-pytest. 393s Preparing to unpack .../29-python3-pytest_7.4.4-1_all.deb ... 393s Unpacking python3-pytest (7.4.4-1) ... 393s Selecting previously unselected package autopkgtest-satdep. 393s Preparing to unpack .../30-1-autopkgtest-satdep.deb ... 393s Unpacking autopkgtest-satdep (0) ... 393s Setting up python3-iniconfig (1.1.1-2) ... 394s Setting up libaec0:arm64 (1.1.2-1) ... 394s Setting up libblas3:arm64 (3.12.0-3) ... 394s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 394s Setting up python3-packaging (23.2-1) ... 394s Setting up liblzf1:arm64 (3.6-4) ... 394s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 394s Setting up python3-pluggy (1.4.0-1) ... 394s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... 394s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 394s Setting up python3-lib2to3 (3.11.5-1) ... 395s Setting up libsz2:arm64 (1.1.2-1) ... 395s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 395s Setting up python3-distutils (3.11.5-1) ... 395s python3.12: can't get files for byte-compilation 395s Setting up python3.11-minimal (3.11.8-1) ... 395s Setting up liblapack3:arm64 (3.12.0-3) ... 395s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 395s Setting up python3-pytest (7.4.4-1) ... 396s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... 396s Setting up python3-all (3.12.1-0ubuntu2) ... 396s Setting up libjs-sphinxdoc (7.2.6-4) ... 396s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu2) ... 396s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu2) ... 396s Setting up python3.11 (3.11.8-1) ... 396s Setting up python-h5netcdf-doc (1.3.0-1) ... 396s Setting up python3-numpy (1:1.24.2-2) ... 398s Setting up libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 398s Setting up python3-h5py-serial (3.10.0-1ubuntu2) ... 398s Setting up python3-h5py (3.10.0-1ubuntu2) ... 399s Setting up python3-cftime (1.6.3-1build1) ... 399s Setting up python3-netcdf4 (1.6.5-1build1) ... 399s Setting up python3-h5netcdf (1.3.0-1) ... 399s Setting up autopkgtest-satdep (0) ... 399s Processing triggers for systemd (255.2-3ubuntu2) ... 399s Processing triggers for man-db (2.12.0-3) ... 399s Processing triggers for libc-bin (2.39-0ubuntu2) ... 404s (Reading database ... 77230 files and directories currently installed.) 404s Removing autopkgtest-satdep (0) ... 404s autopkgtest [21:55:14]: test command1: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests ; done 404s autopkgtest [21:55:14]: test command1: [----------------------- 405s Testing with python3.12: 405s ============================= test session starts ============================== 405s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3.12 405s cachedir: .pytest_cache 405s rootdir: /tmp/autopkgtest.bd562u/autopkgtest_tmp/tests 405s configfile: pytest.ini 406s collecting ... collected 101 items 406s 406s tests/test_h5netcdf.py::test_write_legacyapi_read_netCDF4 PASSED [ 0%] 406s tests/test_h5netcdf.py::test_roundtrip_h5netcdf_legacyapi PASSED [ 1%] 406s tests/test_h5netcdf.py::test_write_netCDF4_read_legacyapi PASSED [ 2%] 406s tests/test_h5netcdf.py::test_write_h5netcdf_read_legacyapi PASSED [ 3%] 406s tests/test_h5netcdf.py::test_write_h5netcdf_read_netCDF4 PASSED [ 4%] 406s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-True] PASSED [ 5%] 406s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-False] PASSED [ 6%] 406s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5:/testfile-True] SKIPPED [ 7%] 406s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5:/testfile-False] SKIPPED [ 8%] 406s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[True] PASSED [ 9%] 407s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[False] PASSED [ 10%] 407s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[True] PASSED [ 11%] 407s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[False] PASSED [ 12%] 407s tests/test_h5netcdf.py::test_fileobj[True] PASSED [ 13%] 407s tests/test_h5netcdf.py::test_fileobj[False] PASSED [ 14%] 407s tests/test_h5netcdf.py::test_repr[testfile.nc] PASSED [ 15%] 407s tests/test_h5netcdf.py::test_repr[hdf5:/testfile] SKIPPED (h5pyd pac...) [ 16%] 407s tests/test_h5netcdf.py::test_attrs_api[testfile.nc] PASSED [ 17%] 407s tests/test_h5netcdf.py::test_attrs_api[hdf5:/testfile] SKIPPED (h5py...) [ 18%] 407s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[testfile.nc] PASSED [ 19%] 407s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[hdf5:/testfile] SKIPPED [ 20%] 407s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[testfile.nc] PASSED [ 21%] 407s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[hdf5:/testfile] SKIPPED [ 22%] 407s tests/test_h5netcdf.py::test_error_handling[testfile.nc] PASSED [ 23%] 407s tests/test_h5netcdf.py::test_error_handling[hdf5:/testfile] SKIPPED [ 24%] 407s tests/test_h5netcdf.py::test_decode_string_error[testfile.nc] PASSED [ 25%] 407s tests/test_h5netcdf.py::test_decode_string_error[hdf5:/testfile] SKIPPED [ 26%] 407s tests/test_h5netcdf.py::test_invalid_netcdf4[testfile.nc] PASSED [ 27%] 407s tests/test_h5netcdf.py::test_invalid_netcdf4[hdf5:/testfile] SKIPPED [ 28%] 407s tests/test_h5netcdf.py::test_fake_phony_dims[testfile.nc] PASSED [ 29%] 407s tests/test_h5netcdf.py::test_fake_phony_dims[hdf5:/testfile] SKIPPED [ 30%] 407s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[testfile.nc] PASSED [ 31%] 407s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[hdf5:/testfile] SKIPPED [ 32%] 407s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[testfile.nc] PASSED [ 33%] 407s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[hdf5:/testfile] SKIPPED [ 34%] 407s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[testfile.nc] PASSED [ 35%] 407s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[hdf5:/testfile] SKIPPED [ 36%] 407s tests/test_h5netcdf.py::test_Netcdf4Dimid PASSED [ 37%] 407s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[True] PASSED [ 38%] 407s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[False] PASSED [ 39%] 407s tests/test_h5netcdf.py::test_nc_properties_new[testfile.nc] PASSED [ 40%] 407s tests/test_h5netcdf.py::test_nc_properties_new[hdf5:/testfile] SKIPPED [ 41%] 407s tests/test_h5netcdf.py::test_failed_read_open_and_clean_delete PASSED [ 42%] 407s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[testfile.nc] PASSED [ 43%] 407s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[hdf5:/testfile] SKIPPED [ 44%] 407s tests/test_h5netcdf.py::test_invalid_netcdf_error[testfile.nc] PASSED [ 45%] 407s tests/test_h5netcdf.py::test_invalid_netcdf_error[hdf5:/testfile] SKIPPED [ 46%] 407s tests/test_h5netcdf.py::test_invalid_netcdf_okay[testfile.nc] PASSED [ 47%] 407s tests/test_h5netcdf.py::test_invalid_netcdf_okay[hdf5:/testfile] SKIPPED [ 48%] 407s tests/test_h5netcdf.py::test_invalid_netcdf_overwrite_valid PASSED [ 49%] 407s tests/test_h5netcdf.py::test_reopen_file_different_dimension_sizes PASSED [ 50%] 407s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[testfile.nc] PASSED [ 51%] 407s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[hdf5:/testfile] SKIPPED [ 52%] 407s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[testfile.nc] PASSED [ 53%] 407s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[hdf5:/testfile] SKIPPED [ 54%] 407s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[testfile.nc] PASSED [ 55%] 407s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[hdf5:/testfile] SKIPPED [ 56%] 407s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[testfile.nc] PASSED [ 57%] 407s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[hdf5:/testfile] SKIPPED [ 58%] 407s tests/test_h5netcdf.py::test_c_api_can_read_unlimited_dimensions PASSED [ 59%] 407s tests/test_h5netcdf.py::test_reading_unlimited_dimensions_created_with_c_api PASSED [ 60%] 407s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[testfile.nc] PASSED [ 61%] 407s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[hdf5:/testfile] SKIPPED [ 62%] 407s tests/test_h5netcdf.py::test_reading_special_datatype_created_with_c_api PASSED [ 63%] 407s tests/test_h5netcdf.py::test_nc4_non_coord PASSED [ 64%] 407s tests/test_h5netcdf.py::test_overwrite_existing_file PASSED [ 65%] 407s tests/test_h5netcdf.py::test_scales_on_append PASSED [ 66%] 407s tests/test_h5netcdf.py::test_create_attach_scales_netcdf4 PASSED [ 67%] 407s tests/test_h5netcdf.py::test_create_attach_scales_legacyapi PASSED [ 68%] 407s tests/test_h5netcdf.py::test_detach_scale PASSED [ 69%] 407s tests/test_h5netcdf.py::test_is_scale PASSED [ 70%] 407s tests/test_h5netcdf.py::test_get_dim_scale_refs PASSED [ 71%] 407s tests/test_h5netcdf.py::test_dimensions[read_write_matrix0] PASSED [ 72%] 407s tests/test_h5netcdf.py::test_dimensions[read_write_matrix1] PASSED [ 73%] 407s tests/test_h5netcdf.py::test_dimensions[read_write_matrix2] PASSED [ 74%] 407s tests/test_h5netcdf.py::test_dimensions[read_write_matrix3] PASSED [ 75%] 407s tests/test_h5netcdf.py::test_dimensions[read_write_matrix4] PASSED [ 76%] 407s tests/test_h5netcdf.py::test_dimensions[read_write_matrix5] PASSED [ 77%] 407s tests/test_h5netcdf.py::test_dimensions[read_write_matrix6] PASSED [ 78%] 408s tests/test_h5netcdf.py::test_dimensions[read_write_matrix7] PASSED [ 79%] 408s tests/test_h5netcdf.py::test_dimensions[read_write_matrix8] PASSED [ 80%] 408s tests/test_h5netcdf.py::test_no_circular_references PASSED [ 81%] 408s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[netCDF4] PASSED [ 82%] 408s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[h5netcdf.legacyapi] PASSED [ 83%] 408s tests/test_h5netcdf.py::test_creation_with_h5netcdf_edit_with_netcdf4 PASSED [ 84%] 408s tests/test_h5netcdf.py::test_track_order_specification PASSED [ 85%] 408s tests/test_h5netcdf.py::test_more_than_7_attr_creation PASSED [ 86%] 408s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[False] PASSED [ 87%] 408s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[True] PASSED [ 88%] 408s tests/test_h5netcdf.py::test_group_names PASSED [ 89%] 408s tests/test_h5netcdf.py::test_legacyapi_endianess PASSED [ 90%] 408s tests/test_h5netcdf.py::test_bool_slicing_length_one_dim PASSED [ 91%] 408s tests/test_h5netcdf.py::test_fancy_indexing PASSED [ 92%] 408s tests/test_h5netcdf.py::test_h5py_chunking PASSED [ 93%] 408s tests/test_h5netcdf.py::test_h5netcdf_chunking PASSED [ 94%] 408s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error PASSED [ 95%] 408s tests/test_h5netcdf.py::test_dimensions_in_parent_groups PASSED [ 96%] 408s tests/test_h5netcdf.py::test_array_attributes PASSED [ 97%] 408s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[True] PASSED [ 98%] 408s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[False] PASSED [ 99%] 444s tests/test_h5netcdf.py::test_ros3 PASSED [100%] 444s 444s ======================= 79 passed, 22 skipped in 39.00s ======================== 445s autopkgtest [21:55:55]: test command1: -----------------------] 445s autopkgtest [21:55:55]: test command1: - - - - - - - - - - results - - - - - - - - - - 445s command1 PASS 446s autopkgtest [21:55:56]: @@@@@@@@@@@@@@@@@@@@ summary 446s command1 PASS 464s Creating nova instance adt-noble-arm64-python-h5netcdf-20240313-214830-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240313.img (UUID 363cdc04-8630-403e-ac93-f1c7b1a75157)...