0s autopkgtest [21:47:52]: starting date and time: 2024-03-13 21:47:52+0000 0s autopkgtest [21:47:52]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [21:47:52]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8me_2iut/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:hdf5,src:openmpi,src:openssl,src:pmix --apt-upgrade python-cooler --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.10.0-1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu2 openmpi/4.1.6-5.1ubuntu3 openssl/3.0.13-0ubuntu1 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-arm64-8.secgroup --name adt-noble-arm64-python-cooler-20240313-214751-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 120s autopkgtest [21:49:52]: testbed dpkg architecture: arm64 120s autopkgtest [21:49:52]: testbed apt version: 2.7.12 120s autopkgtest [21:49:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 121s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 121s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [42.3 kB] 121s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 121s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2818 kB] 122s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [450 kB] 122s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [603 kB] 122s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 122s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 122s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 122s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3218 kB] 122s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 122s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [42.3 kB] 122s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 127s Fetched 7327 kB in 2s (3303 kB/s) 127s Reading package lists... 128s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 129s Reading package lists... 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 141s Calculating upgrade... 142s The following packages will be REMOVED: 142s libssl3 142s The following NEW packages will be installed: 142s libssl3t64 142s The following packages will be upgraded: 142s console-setup console-setup-linux keyboard-configuration openssl 142s 4 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 142s Need to get 4955 kB of archives. 142s After this operation, 74.8 kB of additional disk space will be used. 142s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 142s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 142s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 console-setup-linux all 1.226ubuntu1 [1880 kB] 142s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 console-setup all 1.226ubuntu1 [110 kB] 142s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 keyboard-configuration all 1.226ubuntu1 [212 kB] 143s Preconfiguring packages ... 144s Fetched 4955 kB in 1s (6225 kB/s) 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75867 files and directories currently installed.) 144s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 144s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 144s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 144s wget depends on libssl3 (>= 3.0.0). 144s u-boot-tools depends on libssl3 (>= 3.0.0). 144s tnftp depends on libssl3 (>= 3.0.0). 144s tcpdump depends on libssl3 (>= 3.0.0). 144s systemd-resolved depends on libssl3 (>= 3.0.0). 144s systemd depends on libssl3 (>= 3.0.0). 144s sudo depends on libssl3 (>= 3.0.0). 144s sbsigntool depends on libssl3 (>= 3.0.0). 144s rsync depends on libssl3 (>= 3.0.0). 144s python3-cryptography depends on libssl3 (>= 3.0.0). 144s openssh-server depends on libssl3 (>= 3.0.10). 144s openssh-client depends on libssl3 (>= 3.0.10). 144s mtd-utils depends on libssl3 (>= 3.0.0). 144s mokutil depends on libssl3 (>= 3.0.0). 144s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 144s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 144s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 144s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 144s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 144s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 144s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 144s libnvme1 depends on libssl3 (>= 3.0.0). 144s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 144s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 144s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 144s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 144s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 144s kmod depends on libssl3 (>= 3.0.0). 144s dhcpcd-base depends on libssl3 (>= 3.0.0). 144s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 144s 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75867 files and directories currently installed.) 144s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 144s Selecting previously unselected package libssl3t64:arm64. 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75856 files and directories currently installed.) 144s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 144s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 144s Preparing to unpack .../console-setup-linux_1.226ubuntu1_all.deb ... 144s Unpacking console-setup-linux (1.226ubuntu1) over (1.223ubuntu2) ... 145s Preparing to unpack .../console-setup_1.226ubuntu1_all.deb ... 145s Unpacking console-setup (1.226ubuntu1) over (1.223ubuntu2) ... 145s Preparing to unpack .../keyboard-configuration_1.226ubuntu1_all.deb ... 145s Unpacking keyboard-configuration (1.226ubuntu1) over (1.223ubuntu2) ... 145s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 145s Setting up keyboard-configuration (1.226ubuntu1) ... 146s Your console font configuration will be updated the next time your system 146s boots. If you want to update it now, run 'setupcon' from a virtual console. 146s update-initramfs: deferring update (trigger activated) 146s Setting up openssl (3.0.13-0ubuntu1) ... 147s Setting up console-setup-linux (1.226ubuntu1) ... 150s Setting up console-setup (1.226ubuntu1) ... 151s update-initramfs: deferring update (trigger activated) 151s Processing triggers for man-db (2.12.0-3) ... 152s Processing triggers for libc-bin (2.39-0ubuntu2) ... 152s Processing triggers for initramfs-tools (0.142ubuntu20) ... 152s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 152s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 172s System running in EFI mode, skipping. 172s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 172s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 172s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 172s Reading package lists... 173s Building dependency tree... 173s Reading state information... 174s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 174s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 174s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 174s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 175s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 175s Hit:5 http://ftpmaster.internal/ubuntu noble-backports InRelease 183s Reading package lists... 183s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 183s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 183s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (universe/binary-arm64/PReading package lists...ackages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 183s 183s Building dependency tree... 183s Reading state information... 184s Calculating upgrade... 185s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 186s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 186s autopkgtest [21:50:58]: rebooting testbed after setup commands that affected boot 341s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 349s autopkgtest [21:53:41]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 352s autopkgtest [21:53:44]: @@@@@@@@@@@@@@@@@@@@ apt-source python-cooler 357s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-cooler 0.9.3-1 (dsc) [2825 B] 357s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-cooler 0.9.3-1 (tar) [11.4 MB] 357s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-cooler 0.9.3-1 (diff) [7460 B] 357s gpgv: Signature made Sun Feb 4 19:13:06 2024 UTC 357s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 357s gpgv: issuer "tillea@rki.de" 357s gpgv: Can't check signature: No public key 357s dpkg-source: warning: cannot verify inline signature for ./python-cooler_0.9.3-1.dsc: no acceptable signature found 358s autopkgtest [21:53:50]: testing package python-cooler version 0.9.3-1 358s autopkgtest [21:53:50]: build not needed 400s autopkgtest [21:54:32]: test run-unit-test: preparing testbed 403s Reading package lists... 404s Building dependency tree... 404s Reading state information... 404s Starting pkgProblemResolver with broken count: 0 405s Starting 2 pkgProblemResolver with broken count: 0 405s Done 406s The following additional packages will be installed: 406s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 406s fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0 libfontconfig1 406s libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 406s libhdf5-103-1t64 libhdf5-hl-100t64 libhts3 libhtscodecs2 libimagequant0 406s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 406s liblzf1 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libsz2 libtiff6 406s libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 406s python3-asciitree python3-biopython python3-cairo python3-click 406s python3-cloudpickle python3-colorama python3-cooler python3-cooler-examples 406s python3-cytoolz python3-dask python3-dateutil python3-decorator python3-dill 406s python3-freetype python3-fsspec python3-h5py python3-h5py-serial 406s python3-importlib-metadata python3-iniconfig python3-locket python3-mock 406s python3-more-itertools python3-multiprocess python3-numpy python3-packaging 406s python3-pairix python3-pandas python3-pandas-lib python3-partd python3-pil 406s python3-pluggy python3-pyfaidx python3-pysam python3-pytest 406s python3-reportlab python3-rlpycairo python3-scipy python3-simplejson 406s python3-toolz python3-zipp sgml-base w3c-sgml-lib x11-common 406s xfonts-encodings xfonts-utils xml-core 406s Suggested packages: 406s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 406s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 406s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 406s python3-rdflib python3-psycopg2 raxml samtools t-coffee wise python3-pip 406s ipython python-dask-doc python3-blosc python3-boto python3-distributed 406s python3-graphviz python3-psutil python3-skimage python3-sklearn 406s python3-sqlalchemy python3-tables python3-objgraph python-fsspec-doc 406s python-h5py-doc python-mock-doc gcc gfortran python3-dev python-pandas-doc 406s python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools 406s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python-toolz-doc 406s sgml-base-doc debhelper 406s Recommended packages: 406s python-biopython-doc ncbi-blast+ git python3-distributed python3-dropbox 406s python3-fusepy python3-libarchive-c python3-paramiko python3-pygit2 406s python3-matplotlib python3-bottleneck python3-numexpr python3-odf 406s python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables 406s python3-blosc python3-zmq python3-olefile g++ | c++-compiler 406s The following NEW packages will be installed: 406s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-extra 406s fonts-dejavu-mono fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0 406s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 406s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhts3 libhtscodecs2 406s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblbfgsb0 406s liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 406s libsz2 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 406s libxcb-shm0 libxrender1 python3-asciitree python3-biopython python3-cairo 406s python3-click python3-cloudpickle python3-colorama python3-cooler 406s python3-cooler-examples python3-cytoolz python3-dask python3-dateutil 406s python3-decorator python3-dill python3-freetype python3-fsspec python3-h5py 406s python3-h5py-serial python3-importlib-metadata python3-iniconfig 406s python3-locket python3-mock python3-more-itertools python3-multiprocess 406s python3-numpy python3-packaging python3-pairix python3-pandas 406s python3-pandas-lib python3-partd python3-pil python3-pluggy python3-pyfaidx 406s python3-pysam python3-pytest python3-reportlab python3-rlpycairo 406s python3-scipy python3-simplejson python3-toolz python3-zipp sgml-base 406s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 406s 0 upgraded, 87 newly installed, 0 to remove and 0 not upgraded. 406s Need to get 77.2 MB/77.2 MB of archives. 406s After this operation, 328 MB of additional disk space will be used. 406s Get:1 /tmp/autopkgtest.k3KQxe/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B] 406s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 sgml-base all 1.31 [11.4 kB] 406s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 407s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 407s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfontenc1 arm64 1:1.1.4-1build3 [14.1 kB] 407s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 407s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 407s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-utils arm64 1:7.7+6build2 [93.6 kB] 407s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 409s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 409s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-extra all 2.37-8 [1947 kB] 410s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 410s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 410s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 410s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 410s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 410s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 410s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 410s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 410s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 410s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 410s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 410s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 410s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 410s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 410s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu2 [1192 kB] 410s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu2 [55.8 kB] 410s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 410s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 410s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libimagequant0 arm64 2.18.0-1 [37.0 kB] 410s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 411s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 411s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 411s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB] 411s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 411s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 411s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 411s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1 [14.4 kB] 411s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 411s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 411s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 411s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 411s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB] 411s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB] 411s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-asciitree all 0.3.3-4 [5644 B] 411s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 412s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 412s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pil arm64 10.2.0-1 [477 kB] 412s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 python3-cairo arm64 1.25.1-2 [153 kB] 412s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-freetype all 2.4.0-1 [83.1 kB] 412s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 412s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-reportlab all 4.1.0-1 [683 kB] 412s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 xml-core all 0.19 [20.3 kB] 413s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 413s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-biopython arm64 1.81+dfsg-3 [1664 kB] 413s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 413s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 python3-more-itertools all 10.2.0-1 [52.9 kB] 413s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 python3-zipp all 1.0.0-6 [6090 B] 413s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 python3-importlib-metadata all 4.12.0-1 [17.8 kB] 413s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 python3-click all 8.1.6-1 [79.0 kB] 413s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cloudpickle all 3.0.0-1 [21.4 kB] 413s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-toolz all 0.12.0-2 [52.7 kB] 413s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cytoolz arm64 0.12.2-1 [580 kB] 413s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu2 [887 kB] 413s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-h5py all 3.10.0-1ubuntu2 [7980 B] 413s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-dill all 0.3.8-1 [83.0 kB] 413s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-multiprocess all 0.70.16-2 [105 kB] 413s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB] 413s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-4ubuntu2 [7669 kB] 415s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 416s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pyfaidx all 0.8.1.1-1 [29.6 kB] 416s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 416s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6 [18.6 MB] 424s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 python3-simplejson arm64 3.19.2-1build1 [61.4 kB] 424s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pysam arm64 0.22.0+ds-1 [4399 kB] 426s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pairix arm64 0.3.7-7 [48.0 kB] 426s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cooler arm64 0.9.3-1 [78.7 kB] 426s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cooler-examples all 0.9.3-1 [9226 kB] 429s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fsspec all 2023.10.0-1 [111 kB] 429s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 429s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-locket all 1.0.0-2 [5872 B] 429s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-partd all 1.4.1-1 [17.7 kB] 429s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-dask all 2023.12.1+dfsg-2 [1124 kB] 430s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 430s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB] 430s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB] 430s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mock all 5.1.0-1 [64.1 kB] 431s Fetched 77.2 MB in 24s (3269 kB/s) 431s Selecting previously unselected package sgml-base. 431s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 431s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 431s Unpacking sgml-base (1.31) ... 431s Selecting previously unselected package fonts-dejavu-mono. 431s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 431s Unpacking fonts-dejavu-mono (2.37-8) ... 431s Selecting previously unselected package fonts-dejavu-core. 431s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 431s Unpacking fonts-dejavu-core (2.37-8) ... 431s Selecting previously unselected package libfontenc1:arm64. 431s Preparing to unpack .../03-libfontenc1_1%3a1.1.4-1build3_arm64.deb ... 431s Unpacking libfontenc1:arm64 (1:1.1.4-1build3) ... 431s Selecting previously unselected package x11-common. 431s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu2_all.deb ... 431s Unpacking x11-common (1:7.7+23ubuntu2) ... 431s Selecting previously unselected package xfonts-encodings. 431s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 431s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 431s Selecting previously unselected package xfonts-utils. 432s Preparing to unpack .../06-xfonts-utils_1%3a7.7+6build2_arm64.deb ... 432s Unpacking xfonts-utils (1:7.7+6build2) ... 432s Selecting previously unselected package fonts-urw-base35. 432s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ... 432s Unpacking fonts-urw-base35 (20200910-8) ... 432s Selecting previously unselected package fontconfig-config. 432s Preparing to unpack .../08-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 432s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 432s Selecting previously unselected package fonts-dejavu-extra. 432s Preparing to unpack .../09-fonts-dejavu-extra_2.37-8_all.deb ... 432s Unpacking fonts-dejavu-extra (2.37-8) ... 432s Selecting previously unselected package libaec0:arm64. 432s Preparing to unpack .../10-libaec0_1.1.2-1_arm64.deb ... 432s Unpacking libaec0:arm64 (1.1.2-1) ... 433s Selecting previously unselected package libblas3:arm64. 433s Preparing to unpack .../11-libblas3_3.12.0-3_arm64.deb ... 433s Unpacking libblas3:arm64 (3.12.0-3) ... 433s Selecting previously unselected package libfontconfig1:arm64. 433s Preparing to unpack .../12-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 433s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 433s Selecting previously unselected package libpixman-1-0:arm64. 433s Preparing to unpack .../13-libpixman-1-0_0.42.2-1_arm64.deb ... 433s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 433s Selecting previously unselected package libxcb-render0:arm64. 433s Preparing to unpack .../14-libxcb-render0_1.15-1_arm64.deb ... 433s Unpacking libxcb-render0:arm64 (1.15-1) ... 433s Selecting previously unselected package libxcb-shm0:arm64. 433s Preparing to unpack .../15-libxcb-shm0_1.15-1_arm64.deb ... 433s Unpacking libxcb-shm0:arm64 (1.15-1) ... 433s Selecting previously unselected package libxrender1:arm64. 433s Preparing to unpack .../16-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 433s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 433s Selecting previously unselected package libcairo2:arm64. 433s Preparing to unpack .../17-libcairo2_1.18.0-1_arm64.deb ... 433s Unpacking libcairo2:arm64 (1.18.0-1) ... 433s Selecting previously unselected package libdeflate0:arm64. 433s Preparing to unpack .../18-libdeflate0_1.19-1_arm64.deb ... 433s Unpacking libdeflate0:arm64 (1.19-1) ... 433s Selecting previously unselected package libgfortran5:arm64. 433s Preparing to unpack .../19-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 433s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 433s Selecting previously unselected package libgomp1:arm64. 433s Preparing to unpack .../20-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 433s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 433s Selecting previously unselected package libgraphite2-3:arm64. 433s Preparing to unpack .../21-libgraphite2-3_1.3.14-2_arm64.deb ... 433s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 433s Selecting previously unselected package libharfbuzz0b:arm64. 433s Preparing to unpack .../22-libharfbuzz0b_8.3.0-2_arm64.deb ... 433s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 433s Selecting previously unselected package libsz2:arm64. 433s Preparing to unpack .../23-libsz2_1.1.2-1_arm64.deb ... 433s Unpacking libsz2:arm64 (1.1.2-1) ... 433s Selecting previously unselected package libhdf5-103-1t64:arm64. 433s Preparing to unpack .../24-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu2_arm64.deb ... 433s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu2) ... 433s Selecting previously unselected package libhdf5-hl-100t64:arm64. 433s Preparing to unpack .../25-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu2_arm64.deb ... 433s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu2) ... 433s Selecting previously unselected package libhtscodecs2:arm64. 433s Preparing to unpack .../26-libhtscodecs2_1.6.0-1_arm64.deb ... 433s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 433s Selecting previously unselected package libhts3:arm64. 433s Preparing to unpack .../27-libhts3_1.18+ds-1_arm64.deb ... 433s Unpacking libhts3:arm64 (1.18+ds-1) ... 434s Selecting previously unselected package libimagequant0:arm64. 434s Preparing to unpack .../28-libimagequant0_2.18.0-1_arm64.deb ... 434s Unpacking libimagequant0:arm64 (2.18.0-1) ... 434s Selecting previously unselected package libjpeg-turbo8:arm64. 434s Preparing to unpack .../29-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 434s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 434s Selecting previously unselected package libjpeg8:arm64. 434s Preparing to unpack .../30-libjpeg8_8c-2ubuntu11_arm64.deb ... 434s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 434s Selecting previously unselected package liblapack3:arm64. 434s Preparing to unpack .../31-liblapack3_3.12.0-3_arm64.deb ... 434s Unpacking liblapack3:arm64 (3.12.0-3) ... 434s Selecting previously unselected package liblbfgsb0:arm64. 434s Preparing to unpack .../32-liblbfgsb0_3.0+dfsg.4-1_arm64.deb ... 434s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1) ... 434s Selecting previously unselected package liblcms2-2:arm64. 434s Preparing to unpack .../33-liblcms2-2_2.14-2_arm64.deb ... 434s Unpacking liblcms2-2:arm64 (2.14-2) ... 434s Selecting previously unselected package liblerc4:arm64. 434s Preparing to unpack .../34-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 434s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 434s Selecting previously unselected package liblzf1:arm64. 434s Preparing to unpack .../35-liblzf1_3.6-4_arm64.deb ... 434s Unpacking liblzf1:arm64 (3.6-4) ... 434s Selecting previously unselected package libraqm0:arm64. 434s Preparing to unpack .../36-libraqm0_0.10.1-1_arm64.deb ... 434s Unpacking libraqm0:arm64 (0.10.1-1) ... 434s Selecting previously unselected package libsharpyuv0:arm64. 434s Preparing to unpack .../37-libsharpyuv0_1.3.2-0.4_arm64.deb ... 434s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 434s Selecting previously unselected package libjbig0:arm64. 434s Preparing to unpack .../38-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 434s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 434s Selecting previously unselected package libwebp7:arm64. 434s Preparing to unpack .../39-libwebp7_1.3.2-0.4_arm64.deb ... 434s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 434s Selecting previously unselected package libtiff6:arm64. 434s Preparing to unpack .../40-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 434s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 434s Selecting previously unselected package libwebpdemux2:arm64. 434s Preparing to unpack .../41-libwebpdemux2_1.3.2-0.4_arm64.deb ... 434s Unpacking libwebpdemux2:arm64 (1.3.2-0.4) ... 434s Selecting previously unselected package libwebpmux3:arm64. 434s Preparing to unpack .../42-libwebpmux3_1.3.2-0.4_arm64.deb ... 434s Unpacking libwebpmux3:arm64 (1.3.2-0.4) ... 434s Selecting previously unselected package python3-asciitree. 434s Preparing to unpack .../43-python3-asciitree_0.3.3-4_all.deb ... 434s Unpacking python3-asciitree (0.3.3-4) ... 434s Selecting previously unselected package python3-numpy. 434s Preparing to unpack .../44-python3-numpy_1%3a1.24.2-2_arm64.deb ... 434s Unpacking python3-numpy (1:1.24.2-2) ... 435s Selecting previously unselected package libopenjp2-7:arm64. 435s Preparing to unpack .../45-libopenjp2-7_2.5.0-2_arm64.deb ... 435s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 435s Selecting previously unselected package python3-pil:arm64. 435s Preparing to unpack .../46-python3-pil_10.2.0-1_arm64.deb ... 435s Unpacking python3-pil:arm64 (10.2.0-1) ... 435s Selecting previously unselected package python3-cairo. 435s Preparing to unpack .../47-python3-cairo_1.25.1-2_arm64.deb ... 435s Unpacking python3-cairo (1.25.1-2) ... 435s Selecting previously unselected package python3-freetype. 435s Preparing to unpack .../48-python3-freetype_2.4.0-1_all.deb ... 435s Unpacking python3-freetype (2.4.0-1) ... 435s Selecting previously unselected package python3-rlpycairo. 435s Preparing to unpack .../49-python3-rlpycairo_0.3.0-3_all.deb ... 435s Unpacking python3-rlpycairo (0.3.0-3) ... 435s Selecting previously unselected package python3-reportlab. 435s Preparing to unpack .../50-python3-reportlab_4.1.0-1_all.deb ... 435s Unpacking python3-reportlab (4.1.0-1) ... 435s Selecting previously unselected package xml-core. 435s Preparing to 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(libblas.so.3-aarch64-linux-gnu) in auto mode 446s Setting up python3-packaging (23.2-1) ... 446s Setting up python3-dill (0.3.8-1) ... 447s Setting up liblzf1:arm64 (3.6-4) ... 447s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 447s Setting up libimagequant0:arm64 (2.18.0-1) ... 447s Setting up fonts-dejavu-mono (2.37-8) ... 447s Setting up fonts-dejavu-core (2.37-8) ... 447s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 447s Setting up python3-asciitree (0.3.3-4) ... 447s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 447s Setting up python3-pluggy (1.4.0-1) ... 447s Setting up python3-cooler-examples (0.9.3-1) ... 447s Setting up libwebp7:arm64 (1.3.2-0.4) ... 448s Setting up fonts-dejavu-extra (2.37-8) ... 448s Setting up libopenjp2-7:arm64 (2.5.0-2) ... 448s Setting up python3-toolz (0.12.0-2) ... 448s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 448s Setting up python3-dateutil (2.8.2-3) ... 448s Setting up sgml-base (1.31) ... 448s Setting up 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454s Setting up python3-numpy (1:1.24.2-2) ... 458s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 458s Setting up xml-core (0.19) ... 459s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 459s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu2) ... 459s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ... 459s Setting up python3-pyfaidx (0.8.1.1-1) ... 459s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu2) ... 459s Setting up python3-scipy (1.11.4-6) ... 465s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ... 465s Setting up python3-h5py-serial (3.10.0-1ubuntu2) ... 466s Setting up fonts-urw-base35 (20200910-8) ... 466s Setting up libcairo2:arm64 (1.18.0-1) ... 466s Setting up python3-pil:arm64 (10.2.0-1) ... 467s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 476s Setting up python3-h5py (3.10.0-1ubuntu2) ... 476s Setting up python3-cairo (1.25.1-2) ... 477s Setting up python3-rlpycairo (0.3.0-3) ... 477s Setting up python3-reportlab (4.1.0-1) ... 478s Processing triggers for libc-bin (2.39-0ubuntu2) ... 479s Processing triggers for man-db (2.12.0-3) ... 480s Processing triggers for sgml-base (1.31) ... 480s Setting up w3c-sgml-lib (1.3-3) ... 540s Setting up python3-biopython (1.81+dfsg-3) ... 542s Setting up python3-cooler (0.9.3-1) ... 542s Setting up autopkgtest-satdep (0) ... 552s (Reading database ... 83978 files and directories currently installed.) 552s Removing autopkgtest-satdep (0) ... 552s autopkgtest [21:57:04]: test run-unit-test: [----------------------- 553s + cp -a /usr/share/doc/python3-cooler/tests.tar.xz /tmp/autopkgtest.k3KQxe/autopkgtest_tmp 553s + cd /tmp/autopkgtest.k3KQxe/autopkgtest_tmp 553s + tar xaf tests.tar.xz 553s + pytest-3 556s ============================= test session starts ============================== 556s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 556s rootdir: /tmp/autopkgtest.k3KQxe/autopkgtest_tmp 556s collected 136 items 556s 556s tests/test_api.py .......... [ 7%] 559s tests/test_balance.py .... [ 10%] 559s tests/test_cli.py .s..s..... [ 17%] 561s tests/test_cli_export.py ..s [ 19%] 561s tests/test_cli_fileops.py .... [ 22%] 569s tests/test_cli_ingest.py ........... [ 30%] 573s tests/test_cli_ops.py .... [ 33%] 574s tests/test_core.py ........... [ 41%] 583s tests/test_create.py .s....... [ 48%] 616s tests/test_create_ingest.py ............... [ 59%] 617s tests/test_create_sanitize.py ........ [ 65%] 617s tests/test_fileops.py ........s.. [ 73%] 617s tests/test_parallel.py ... [ 75%] 626s tests/test_reduce.py .......... [ 83%] 627s tests/test_util.py .........s............. [100%] 627s 627s =============================== warnings summary =============================== 627s ../../../usr/lib/python3/dist-packages/dateutil/tz/tz.py:37 627s /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). 627s EPOCH = datetime.datetime.utcfromtimestamp(0) 627s 627s tests/test_api.py::test_bintable_many_contigs 627s /tmp/autopkgtest.k3KQxe/autopkgtest_tmp/tests/test_api.py:44: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead 627s assert pd.api.types.is_categorical_dtype(bins["chrom"].dtype) 627s 627s tests/test_api.py::test_bintable_many_contigs 627s /tmp/autopkgtest.k3KQxe/autopkgtest_tmp/tests/test_api.py:47: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead 627s assert pd.api.types.is_categorical_dtype(bins["chrom"].dtype) 627s 627s tests/test_api.py::test_bintable_many_contigs 627s /tmp/autopkgtest.k3KQxe/autopkgtest_tmp/tests/test_api.py:51: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead 627s assert pd.api.types.is_categorical_dtype(chroms.dtype) 627s 627s tests/test_balance.py::test_balancing_other_options[/tmp/autopkgtest.k3KQxe/autopkgtest_tmp/tests/data/toy.symm.upper.2.cool-0.01] 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s /usr/lib/python3/dist-packages/cooler/balance.py:112: RuntimeWarning: Mean of empty slice. 627s scale = nzmarg.mean() 627s 627s tests/test_balance.py::test_balancing_other_options[/tmp/autopkgtest.k3KQxe/autopkgtest_tmp/tests/data/toy.symm.upper.2.cool-0.01] 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s /usr/lib/python3/dist-packages/numpy/core/_methods.py:192: RuntimeWarning: invalid value encountered in scalar divide 627s ret = ret.dtype.type(ret / rcount) 627s 627s tests/test_cli.py::test_makebins 627s /usr/lib/python3/dist-packages/cooler/cli/makebins.py:55: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. 627s bins["id"] = bins.groupby("chrom").cumcount() 627s 627s tests/test_cli_export.py: 1 warning 627s tests/test_create.py: 1 warning 627s tests/test_reduce.py: 15 warnings 627s /usr/lib/python3/dist-packages/cooler/create/_create.py:555: UserWarning: Creating a non-symmetric matrix, but `triucheck` was set to True. Changing to False. 627s warnings.warn( 627s 627s tests/test_cli_ingest.py: 14 warnings 627s tests/test_cli_ops.py: 6 warnings 627s tests/test_create_ingest.py: 31 warnings 627s tests/test_create_sanitize.py: 18 warnings 627s tests/test_reduce.py: 26 warnings 627s tests/test_util.py: 2 warnings 627s /usr/lib/python3/dist-packages/cooler/util.py:730: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead 627s is_cat = pd.api.types.is_categorical_dtype(bins["chrom"]) 627s 627s tests/test_cli_ingest.py: 14 warnings 627s tests/test_cli_ops.py: 6 warnings 627s tests/test_create_ingest.py: 31 warnings 627s tests/test_create_sanitize.py: 18 warnings 627s tests/test_reduce.py: 26 warnings 627s tests/test_util.py: 1 warning 627s /usr/lib/python3/dist-packages/cooler/util.py:771: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. 627s self._bins_grouped = bins.groupby("chrom", sort=False) 627s 627s tests/test_cli_ingest.py: 14 warnings 627s tests/test_cli_ops.py: 6 warnings 627s tests/test_create_ingest.py: 31 warnings 627s tests/test_create_sanitize.py: 18 warnings 627s tests/test_reduce.py: 26 warnings 627s tests/test_util.py: 2 warnings 627s /usr/lib/python3/dist-packages/cooler/util.py:395: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. 627s for _chrom, group in bins.groupby("chrom"): 627s 627s tests/test_cli_ingest.py: 115 warnings 627s tests/test_create_ingest.py: 56 warnings 627s tests/test_create_sanitize.py: 9 warnings 627s /usr/lib/python3/dist-packages/cooler/create/_ingest.py:133: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 627s chromsizes1 = gs.chromsizes[chrom1_ids].values 627s 627s tests/test_cli_ingest.py: 115 warnings 627s tests/test_create_ingest.py: 56 warnings 627s tests/test_create_sanitize.py: 9 warnings 627s /usr/lib/python3/dist-packages/cooler/create/_ingest.py:134: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 627s chromsizes2 = gs.chromsizes[chrom2_ids].values 627s 627s tests/test_cli_ops.py: 6 warnings 627s tests/test_reduce.py: 26 warnings 627s /usr/lib/python3/dist-packages/cooler/reduce.py:548: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. 627s return old_bins.groupby("chrom").apply(_each).reset_index(drop=True) 627s 627s tests/test_cli_ops.py::test_zoomify 627s /usr/lib/python3/dist-packages/cooler/cli/zoomify.py:198: UserWarning: Map is already < 256 x 256. Provide resolutions explicitly if you want to coarsen more. 627s warnings.warn( 627s 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_cli_ops.py::test_zoomify 627s tests/test_reduce.py::test_zoomify 627s tests/test_reduce.py::test_zoomify 627s tests/test_reduce.py::test_zoomify 627s /usr/lib/python3/dist-packages/cooler/reduce.py:792: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. 627s n_bins_longest_chrom[base_binsize] = clr.bins()[:].groupby("chrom").size().max() 627s 627s tests/test_cli_ops.py::test_balance 627s tests/test_cli_ops.py::test_balance 627s tests/test_cli_ops.py::test_balance 627s /usr/lib/python3/dist-packages/cooler/balance.py:108: ConvergenceWarning: Iteration limit reached without convergence. 627s warnings.warn( 627s 627s tests/test_cli_ops.py::test_balance 627s /usr/lib/python3/dist-packages/cooler/cli/balance.py:183: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. 627s bins_grouped = clr.bins()[:].groupby('chrom') 627s 627s tests/test_core.py: 6 warnings 627s tests/test_create.py: 29 warnings 627s /usr/lib/python3/dist-packages/cooler/core/_tableops.py:120: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead 627s elif is_categorical_dtype(data): 627s 627s tests/test_core.py::test_put 627s /tmp/autopkgtest.k3KQxe/autopkgtest_tmp/tests/test_core.py:94: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead 627s assert pd.api.types.is_categorical_dtype(out['chrom_enum'].dtype) 627s 627s tests/test_core.py::test_put 627s /tmp/autopkgtest.k3KQxe/autopkgtest_tmp/tests/test_core.py:104: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead 627s assert not pd.api.types.is_categorical_dtype(out['chrom_string'].dtype) 627s 627s tests/test_create.py::test_rename_chroms 627s tests/test_create.py::test_many_contigs 627s /usr/lib/python3/dist-packages/cooler/create/_create.py:349: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead 627s if is_categorical_dtype(bins["chrom"]): 627s 627s tests/test_create_ingest.py: 8 warnings 627s tests/test_reduce.py: 6 warnings 627s /usr/lib/python3/dist-packages/multiprocess/popen_fork.py:66: DeprecationWarning: This process (pid=4097) is multi-threaded, use of fork() may lead to deadlocks in the child. 627s self.pid = os.fork() 627s 627s tests/test_reduce.py::test_merge2 627s /usr/lib/python3/dist-packages/cooler/reduce.py:139: UserWarning: Some merge passes will use more than 3 pixels 627s warnings.warn(f"Some merge passes will use more than {self.maxbuf} pixels") 627s 627s tests/test_util.py::test_bedslice 627s /tmp/autopkgtest.k3KQxe/autopkgtest_tmp/tests/test_util.py:234: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. 627s grouped = bins.groupby('chrom') 627s 627s tests/test_util.py::test_check_bins 627s /tmp/autopkgtest.k3KQxe/autopkgtest_tmp/tests/test_util.py:312: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead 627s assert pd.api.types.is_categorical_dtype(bins["chrom"]) 627s 627s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 627s =========== 130 passed, 6 skipped, 787 warnings in 72.93s (0:01:12) ============ 628s autopkgtest [21:58:20]: test run-unit-test: -----------------------] 629s autopkgtest [21:58:21]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 629s run-unit-test PASS 629s autopkgtest [21:58:21]: @@@@@@@@@@@@@@@@@@@@ summary 629s run-unit-test PASS 643s Creating nova instance adt-noble-arm64-python-cooler-20240313-214751-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240313.img (UUID a0e860fd-0684-417f-821d-d8092ab02621)...