2s autopkgtest [22:19:13]: starting date and time: 2024-03-23 22:19:13+0000 2s autopkgtest [22:19:13]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 2s autopkgtest [22:19:13]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qo22y43m/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sphinx --apt-upgrade python-cai --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-arm64-45.secgroup --name adt-noble-arm64-python-cai-20240323-221911-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 201s autopkgtest [22:22:32]: testbed dpkg architecture: arm64 201s autopkgtest [22:22:32]: testbed apt version: 2.7.12 201s autopkgtest [22:22:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 202s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 202s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 202s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4028 kB] 203s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 203s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 203s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [669 kB] 203s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 203s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 203s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 203s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4349 kB] 203s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 203s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [69.8 kB] 203s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 205s Fetched 9835 kB in 2s (5735 kB/s) 205s Reading package lists... 208s Reading package lists... 208s Building dependency tree... 208s Reading state information... 209s Calculating upgrade... 209s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 209s Reading package lists... 209s Building dependency tree... 209s Reading state information... 209s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 210s sh: Attempting to set up Debian/Ubuntu apt sources automatically 210s sh: Distribution appears to be Ubuntu 211s Reading package lists... 211s Building dependency tree... 211s Reading state information... 211s eatmydata is already the newest version (131-1). 211s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 211s Reading package lists... 212s Building dependency tree... 212s Reading state information... 212s dbus is already the newest version (1.14.10-4ubuntu1). 212s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 212s Reading package lists... 212s Building dependency tree... 212s Reading state information... 213s rng-tools-debian is already the newest version (2.4). 213s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 213s Reading package lists... 213s Building dependency tree... 213s Reading state information... 214s The following packages will be REMOVED: 214s cloud-init* python3-configobj* python3-debconf* 214s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 214s After this operation, 3256 kB disk space will be freed. 214s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 214s Removing cloud-init (24.1.2-0ubuntu1) ... 214s Removing python3-configobj (5.0.8-3) ... 214s Removing python3-debconf (1.5.86) ... 214s Processing triggers for man-db (2.12.0-3) ... 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75522 files and directories currently installed.) 215s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 215s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 215s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 215s invoke-rc.d: policy-rc.d denied execution of try-restart. 215s Reading package lists... 216s Building dependency tree... 216s Reading state information... 216s linux-generic is already the newest version (6.8.0-11.11+1). 216s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 217s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 217s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 217s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 218s Reading package lists... 218s Reading package lists... 219s Building dependency tree... 219s Reading state information... 219s Calculating upgrade... 219s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 219s Reading package lists... 219s Building dependency tree... 219s Reading state information... 220s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 220s autopkgtest [22:22:51]: rebooting testbed after setup commands that affected boot 372s autopkgtest [22:25:23]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 375s autopkgtest [22:25:26]: @@@@@@@@@@@@@@@@@@@@ apt-source python-cai 377s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-cai 1.0.2-4 (dsc) [2306 B] 377s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-cai 1.0.2-4 (tar) [1379 kB] 377s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-cai 1.0.2-4 (diff) [3336 B] 377s gpgv: Signature made Sat Oct 22 10:31:56 2022 UTC 377s gpgv: using RSA key B23862C415D6565A4E86CBD7579C160D4C9E23E8 377s gpgv: Can't check signature: No public key 377s dpkg-source: warning: cannot verify inline signature for ./python-cai_1.0.2-4.dsc: no acceptable signature found 377s autopkgtest [22:25:28]: testing package python-cai version 1.0.2-4 377s autopkgtest [22:25:28]: build not needed 378s autopkgtest [22:25:29]: test command1: preparing testbed 386s Reading package lists... 386s Building dependency tree... 386s Reading state information... 387s Starting pkgProblemResolver with broken count: 0 387s Starting 2 pkgProblemResolver with broken count: 0 387s Done 387s The following additional packages will be installed: 387s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 387s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 387s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 387s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore 387s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 387s libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 387s libxcb-render0 libxcb-shm0 libxrender1 python-cai-doc python3-biopython 387s python3-cai python3-cairo python3-click python3-colorama python3-decorator 387s python3-freetype python3-iniconfig python3-numpy python3-packaging 387s python3-pil python3-pluggy python3-pytest python3-reportlab 387s python3-rlpycairo python3-scipy sgml-base w3c-sgml-lib x11-common 387s xfonts-encodings xfonts-utils xml-core 387s Suggested packages: 387s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 387s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 387s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 387s python3-rdflib python3-psycopg2 raxml samtools t-coffee wise gcc gfortran 387s python3-dev python-pil-doc pdf-viewer python3-egenix-mxtexttools 387s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc sgml-base-doc 387s debhelper 387s Recommended packages: 387s javascript-common python-biopython-doc ncbi-blast+ python3-olefile g++ 387s | c++-compiler 387s The following NEW packages will be installed: 387s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-extra 387s fonts-dejavu-mono fonts-urw-base35 libblas3 libcairo2 libdeflate0 387s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 387s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 387s libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 387s libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 387s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 387s python-cai-doc python3-biopython python3-cai python3-cairo python3-click 387s python3-colorama python3-decorator python3-freetype python3-iniconfig 387s python3-numpy python3-packaging python3-pil python3-pluggy python3-pytest 387s python3-reportlab python3-rlpycairo python3-scipy sgml-base w3c-sgml-lib 387s x11-common xfonts-encodings xfonts-utils xml-core 387s 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. 387s Need to get 48.3 MB/48.3 MB of archives. 387s After this operation, 196 MB of additional disk space will be used. 387s Get:1 /tmp/autopkgtest.5sO6CU/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 388s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 sgml-base all 1.31 [11.4 kB] 388s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 388s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 388s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfontenc1 arm64 1:1.1.8-1 [13.9 kB] 388s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 388s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 388s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-utils arm64 1:7.7+6build2 [93.6 kB] 388s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 389s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 389s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-extra all 2.37-8 [1947 kB] 389s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 389s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 389s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 389s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 389s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 389s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 389s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 389s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 389s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 389s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 389s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 389s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 389s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libimagequant0 arm64 2.18.0-1 [37.0 kB] 389s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 389s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 389s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 389s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 389s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-4 [149 kB] 389s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 389s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB] 389s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 389s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 389s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1 [14.4 kB] 389s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 389s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 389s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 389s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 389s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB] 389s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB] 389s Get:41 http://ftpmaster.internal/ubuntu noble/universe arm64 python-cai-doc all 1.0.2-4 [25.7 kB] 389s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 389s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 389s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pil arm64 10.2.0-1 [477 kB] 389s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 python3-cairo arm64 1.25.1-2 [153 kB] 389s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-freetype all 2.4.0-1 [83.1 kB] 389s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 389s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-reportlab all 4.1.0-1 [683 kB] 389s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 xml-core all 0.19 [20.3 kB] 389s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 389s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-biopython arm64 1.81+dfsg-3 [1664 kB] 389s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 389s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 python3-click all 8.1.6-1 [79.0 kB] 389s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 389s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6 [18.6 MB] 390s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cai all 1.0.2-4 [8300 B] 390s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 390s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 390s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB] 390s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB] 390s Fetched 48.3 MB in 2s (22.3 MB/s) 390s Selecting previously unselected package sgml-base. 390s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75467 files and directories currently installed.) 390s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 390s Unpacking sgml-base (1.31) ... 390s Selecting previously unselected package fonts-dejavu-mono. 390s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 390s Unpacking fonts-dejavu-mono (2.37-8) ... 390s Selecting previously unselected package fonts-dejavu-core. 390s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 390s Unpacking fonts-dejavu-core (2.37-8) ... 390s Selecting previously unselected package libfontenc1:arm64. 390s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1_arm64.deb ... 390s Unpacking libfontenc1:arm64 (1:1.1.8-1) ... 390s Selecting previously unselected package x11-common. 390s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu2_all.deb ... 390s Unpacking x11-common (1:7.7+23ubuntu2) ... 390s Selecting previously unselected package xfonts-encodings. 390s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 390s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 390s Selecting previously unselected package xfonts-utils. 390s Preparing to unpack .../06-xfonts-utils_1%3a7.7+6build2_arm64.deb ... 390s Unpacking xfonts-utils (1:7.7+6build2) ... 390s Selecting previously unselected package fonts-urw-base35. 390s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ... 390s Unpacking fonts-urw-base35 (20200910-8) ... 390s Selecting previously unselected package fontconfig-config. 390s Preparing to unpack .../08-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 391s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 391s Selecting previously unselected package fonts-dejavu-extra. 391s Preparing to unpack .../09-fonts-dejavu-extra_2.37-8_all.deb ... 391s Unpacking fonts-dejavu-extra (2.37-8) ... 391s Selecting previously unselected package libblas3:arm64. 391s Preparing to unpack .../10-libblas3_3.12.0-3_arm64.deb ... 391s Unpacking libblas3:arm64 (3.12.0-3) ... 391s Selecting previously unselected package libfontconfig1:arm64. 391s Preparing to unpack .../11-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 391s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 391s Selecting previously unselected package libpixman-1-0:arm64. 391s Preparing to unpack .../12-libpixman-1-0_0.42.2-1_arm64.deb ... 391s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 391s Selecting previously unselected package libxcb-render0:arm64. 391s Preparing to unpack .../13-libxcb-render0_1.15-1_arm64.deb ... 391s Unpacking libxcb-render0:arm64 (1.15-1) ... 391s Selecting previously unselected package libxcb-shm0:arm64. 391s Preparing to unpack .../14-libxcb-shm0_1.15-1_arm64.deb ... 391s Unpacking libxcb-shm0:arm64 (1.15-1) ... 391s Selecting previously unselected package libxrender1:arm64. 391s Preparing to unpack .../15-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 391s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 391s Selecting previously unselected package libcairo2:arm64. 391s Preparing to unpack .../16-libcairo2_1.18.0-1_arm64.deb ... 391s Unpacking libcairo2:arm64 (1.18.0-1) ... 391s Selecting previously unselected package libdeflate0:arm64. 391s Preparing to unpack .../17-libdeflate0_1.19-1_arm64.deb ... 391s Unpacking libdeflate0:arm64 (1.19-1) ... 391s Selecting previously unselected package libgfortran5:arm64. 391s Preparing to unpack .../18-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 391s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 391s Selecting previously unselected package libgomp1:arm64. 391s Preparing to unpack .../19-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 391s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 391s Selecting previously unselected package libgraphite2-3:arm64. 391s Preparing to unpack .../20-libgraphite2-3_1.3.14-2_arm64.deb ... 391s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 391s Selecting previously unselected package libharfbuzz0b:arm64. 391s Preparing to unpack .../21-libharfbuzz0b_8.3.0-2_arm64.deb ... 391s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 391s Selecting previously unselected package libimagequant0:arm64. 391s Preparing to unpack .../22-libimagequant0_2.18.0-1_arm64.deb ... 391s Unpacking libimagequant0:arm64 (2.18.0-1) ... 391s Selecting previously unselected package libjpeg-turbo8:arm64. 391s Preparing to unpack .../23-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 391s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 391s Selecting previously unselected package libjpeg8:arm64. 391s Preparing to unpack .../24-libjpeg8_8c-2ubuntu11_arm64.deb ... 391s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 391s Selecting previously unselected package libjs-jquery. 391s Preparing to unpack .../25-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 391s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 391s Selecting previously unselected package libjs-underscore. 391s Preparing to unpack .../26-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 391s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 391s Selecting previously unselected package libjs-sphinxdoc. 391s Preparing to unpack .../27-libjs-sphinxdoc_7.2.6-4_all.deb ... 391s Unpacking libjs-sphinxdoc (7.2.6-4) ... 391s Selecting previously unselected package liblapack3:arm64. 391s Preparing to unpack .../28-liblapack3_3.12.0-3_arm64.deb ... 391s Unpacking liblapack3:arm64 (3.12.0-3) ... 391s Selecting previously unselected package liblbfgsb0:arm64. 391s Preparing to unpack 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up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 397s Setting up xml-core (0.19) ... 397s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 397s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ... 397s Setting up python3-scipy (1.11.4-6) ... 400s Setting up python-cai-doc (1.0.2-4) ... 400s Setting up fonts-urw-base35 (20200910-8) ... 400s Setting up libcairo2:arm64 (1.18.0-1) ... 400s Setting up python3-pil:arm64 (10.2.0-1) ... 400s Setting up python3-cairo (1.25.1-2) ... 400s Setting up python3-rlpycairo (0.3.0-3) ... 400s Setting up python3-reportlab (4.1.0-1) ... 401s Processing triggers for libc-bin (2.39-0ubuntu6) ... 401s Processing triggers for man-db (2.12.0-3) ... 401s Processing triggers for sgml-base (1.31) ... 402s Setting up w3c-sgml-lib (1.3-3) ... 424s Setting up python3-biopython (1.81+dfsg-3) ... 425s Setting up python3-cai (1.0.2-4) ... 425s Setting up autopkgtest-satdep (0) ... 429s (Reading database ... 80522 files and directories currently installed.) 429s Removing autopkgtest-satdep (0) ... 429s autopkgtest [22:26:20]: test command1: pytest-3 429s autopkgtest [22:26:20]: test command1: [----------------------- 430s ============================= test session starts ============================== 430s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 430s rootdir: /tmp/autopkgtest.5sO6CU/build.SUR/src 430s collected 15 items 430s 430s tests/test_cai.py ..... [ 33%] 430s tests/test_relative_adaptiveness.py .... [ 60%] 430s tests/test_rscu.py ...... [100%] 430s 430s =============================== warnings summary =============================== 430s tests/test_cai.py::test_only_non_synonymous 430s /usr/lib/python3/dist-packages/numpy/lib/function_base.py:518: RuntimeWarning: Mean of empty slice. 430s avg = a.mean(axis, **keepdims_kw) 430s 430s tests/test_cai.py::test_only_non_synonymous 430s /usr/lib/python3/dist-packages/numpy/core/_methods.py:192: RuntimeWarning: invalid value encountered in scalar divide 430s ret = ret.dtype.type(ret / rcount) 430s 430s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 430s ======================== 15 passed, 2 warnings in 0.56s ======================== 431s autopkgtest [22:26:22]: test command1: -----------------------] 431s command1 PASS 431s autopkgtest [22:26:22]: test command1: - - - - - - - - - - results - - - - - - - - - - 432s autopkgtest [22:26:23]: @@@@@@@@@@@@@@@@@@@@ summary 432s command1 PASS 445s Creating nova instance adt-noble-arm64-python-cai-20240323-221911-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240323.img (UUID 5063c5cd-2683-4ea1-9e65-62351adfb1a7)...