0s autopkgtest [21:28:18]: starting date and time: 2024-03-23 21:28:18+0000 0s autopkgtest [21:28:18]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [21:28:18]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qqmzj9bt/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sphinx --apt-upgrade python-ase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-15.secgroup --name adt-noble-arm64-python-ase-20240323-212818-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 146s autopkgtest [21:30:44]: testbed dpkg architecture: arm64 146s autopkgtest [21:30:44]: testbed apt version: 2.7.12 146s autopkgtest [21:30:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup 147s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 147s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3975 kB] 148s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 148s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 148s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 148s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [668 kB] 148s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 148s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 148s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 148s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4401 kB] 148s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 148s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [69.8 kB] 148s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 150s Fetched 9834 kB in 2s (5414 kB/s) 150s Reading package lists... 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 156s Calculating upgrade... 158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 161s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 162s sh: Attempting to set up Debian/Ubuntu apt sources automatically 162s sh: Distribution appears to be Ubuntu 163s Reading package lists... 163s Building dependency tree... 163s Reading state information... 164s eatmydata is already the newest version (131-1). 164s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s dbus is already the newest version (1.14.10-4ubuntu1). 165s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 166s Reading package lists... 166s Building dependency tree... 166s Reading state information... 167s rng-tools-debian is already the newest version (2.4). 167s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 168s The following packages will be REMOVED: 168s cloud-init* python3-configobj* python3-debconf* 168s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 168s After this operation, 3256 kB disk space will be freed. 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74819 files and directories currently installed.) 168s Removing cloud-init (24.1.2-0ubuntu1) ... 169s Removing python3-configobj (5.0.8-3) ... 169s Removing python3-debconf (1.5.86) ... 169s Processing triggers for man-db (2.12.0-3) ... 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74430 files and directories currently installed.) 170s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 171s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 171s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 171s invoke-rc.d: policy-rc.d denied execution of try-restart. 171s Reading package lists... 171s Building dependency tree... 171s Reading state information... 172s linux-generic is already the newest version (6.8.0-11.11+1). 172s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 173s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 173s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 175s Reading package lists... 175s Reading package lists... 176s Building dependency tree... 176s Reading state information... 176s Calculating upgrade... 177s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 177s Reading package lists... 177s Building dependency tree... 177s Reading state information... 178s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 178s autopkgtest [21:31:16]: rebooting testbed after setup commands that affected boot 211s autopkgtest [21:31:49]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 213s autopkgtest [21:31:51]: @@@@@@@@@@@@@@@@@@@@ apt-source python-ase 217s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-ase 3.22.1-4 (dsc) [2586 B] 217s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-ase 3.22.1-4 (tar) [2837 kB] 217s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-ase 3.22.1-4 (diff) [15.4 kB] 218s gpgv: Signature made Sun Jan 7 11:26:42 2024 UTC 218s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 218s gpgv: Can't check signature: No public key 218s dpkg-source: warning: cannot verify inline signature for ./python-ase_3.22.1-4.dsc: no acceptable signature found 218s dpkg-source: warning: diff 'src/debian/patches/2629.patch' patches file src/ase/optimize/test/systems.py more than once 218s autopkgtest [21:31:56]: testing package python-ase version 3.22.1-4 218s autopkgtest [21:31:56]: build not needed 219s autopkgtest [21:31:57]: test command1: preparing testbed 228s Reading package lists... 228s Building dependency tree... 228s Reading state information... 228s Starting pkgProblemResolver with broken count: 0 228s Starting 2 pkgProblemResolver with broken count: 0 228s Done 229s The following additional packages will be installed: 229s ase blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 229s fonts-font-awesome fonts-glyphicons-halflings fonts-lyx libaec0 libblas3 229s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 229s libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libimagequant0 libjbig0 229s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui 229s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libnetcdf19 libopenjp2-7 229s libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0 229s libsharpyuv0 libsymspg2 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 229s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 229s python-matplotlib-data python3-all python3-appdirs python3-ase 229s python3-brotli python3-cftime python3-contourpy python3-cycler 229s python3-dateutil python3-decorator python3-distutils python3-fonttools 229s python3-fs python3-iniconfig python3-kiwisolver python3-lib2to3 python3-lxml 229s python3-lz4 python3-matplotlib python3-mpmath python3-netcdf4 python3-numpy 229s python3-packaging python3-pil python3-pil.imagetk python3-pluggy 229s python3-pycodcif python3-pytest python3-pytest-mock python3-scipy 229s python3-spglib python3-sympy python3-tk python3-ufolib2 python3-unicodedata2 229s python3.11 python3.11-minimal tk8.6-blt2.5 unicode-data x11-common 229s Suggested packages: 229s python-ase-doc blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 229s python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg 229s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 229s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 229s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 229s python3-gmpy2 gcc gfortran python3-dev python-pil-doc python-pytest-mock-doc 229s python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 229s python3.11-venv python3.11-doc binfmt-support 229s Recommended packages: 229s javascript-common python3-bs4 python3-cssselect python3-html5lib 229s python3-olefile g++ | c++-compiler isympy-common 229s The following NEW packages will be installed: 229s ase autopkgtest-satdep blt fontconfig-config fonts-dejavu-core 229s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-lyx 229s libaec0 libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 229s libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libimagequant0 229s libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery 229s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libnetcdf19 229s libopenjp2-7 libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 229s libraqm0 libsharpyuv0 libsymspg2 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 229s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 229s python-matplotlib-data python3-all python3-appdirs python3-ase 229s python3-brotli python3-cftime python3-contourpy python3-cycler 229s python3-dateutil python3-decorator python3-distutils python3-fonttools 229s python3-fs python3-iniconfig python3-kiwisolver python3-lib2to3 python3-lxml 229s python3-lz4 python3-matplotlib python3-mpmath python3-netcdf4 python3-numpy 229s python3-packaging python3-pil python3-pil.imagetk python3-pluggy 229s python3-pycodcif python3-pytest python3-pytest-mock python3-scipy 229s python3-spglib python3-sympy python3-tk python3-ufolib2 python3-unicodedata2 229s python3.11 python3.11-minimal tk8.6-blt2.5 unicode-data x11-common 229s 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. 229s Need to get 73.4 MB/73.4 MB of archives. 229s After this operation, 339 MB of additional disk space will be used. 229s Get:1 /tmp/autopkgtest.lqdLcA/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [744 B] 229s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB] 230s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB] 230s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB] 230s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB] 230s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 230s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 230s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 230s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 230s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 230s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 230s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 230s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 230s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 230s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 230s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB] 230s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6 [18.6 MB] 230s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 libsymspg2 arm64 2.2.0-3 [207 kB] 230s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-spglib arm64 2.2.0-3 [27.7 kB] 230s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 230s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 230s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lyx all 2.4.0~RC3-1 [170 kB] 230s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 230s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB] 231s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 231s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libimagequant0 arm64 2.18.0-1 [37.0 kB] 231s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 231s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 231s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 231s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 231s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 231s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 231s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1 [14.4 kB] 231s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 231s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 231s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 231s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 231s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 231s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 231s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB] 231s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB] 231s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pil arm64 10.2.0-1 [477 kB] 231s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 231s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 231s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 231s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 231s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 231s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 231s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 231s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB] 231s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [618 kB] 231s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 blt arm64 2.5.3+dfsg-7 [4826 B] 231s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 python3-tk arm64 3.11.5-1 [112 kB] 231s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pil.imagetk arm64 10.2.0-1 [9708 B] 231s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-contourpy arm64 1.0.7-1build2 [244 kB] 231s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cycler all 0.11.0-2 [8202 B] 231s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-brotli arm64 1.1.0-2 [345 kB] 231s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 231s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mpmath all 1.2.1-3 [421 kB] 231s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sympy all 1.12-7 [3966 kB] 231s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 231s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fs all 2.4.16-3 [91.1 kB] 231s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxslt1.1 arm64 1.1.39-0exp1 [166 kB] 231s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lxml arm64 5.1.0-1 [2042 kB] 231s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build2 [28.4 kB] 231s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1 [362 kB] 231s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB] 231s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB] 231s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B] 231s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 231s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fonttools arm64 4.46.0-1 [1625 kB] 231s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-kiwisolver arm64 1.4.4-2 [48.5 kB] 231s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 231s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB] 231s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-matplotlib arm64 3.6.3-1ubuntu3 [7291 kB] 232s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ase all 3.22.1-4 [1405 kB] 232s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 ase all 3.22.1-4 [31.3 kB] 232s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 232s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 232s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 232s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 232s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 232s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cftime arm64 1.6.3-1build1 [323 kB] 232s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 232s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-netcdf4 arm64 1.6.5-1build1 [803 kB] 232s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB] 232s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pycodcif arm64 3.8.1+dfsg-1build1 [76.4 kB] 232s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB] 232s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-mock all 3.12.0-1.1 [11.3 kB] 233s Fetched 73.4 MB in 3s (26.5 MB/s) 233s Selecting previously unselected package libpython3.11-minimal:arm64. 233s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74375 files and directories currently installed.) 233s Preparing to unpack .../00-libpython3.11-minimal_3.11.8-1_arm64.deb ... 233s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... 233s Selecting previously unselected package python3.11-minimal. 233s Preparing to unpack .../01-python3.11-minimal_3.11.8-1_arm64.deb ... 233s Unpacking python3.11-minimal (3.11.8-1) ... 233s Selecting previously unselected package libpython3.11-stdlib:arm64. 233s 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liblcms2-2:arm64 (2.14-2) ... 240s Setting up python3-iniconfig (1.1.1-2) ... 240s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 240s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 240s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 240s Setting up python3-lz4 (4.0.2+dfsg-1build2) ... 240s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 240s Setting up python3-unicodedata2 (15.1.0+ds-1) ... 240s Setting up fonts-lyx (2.4.0~RC3-1) ... 240s Setting up x11-common (1:7.7+23ubuntu2) ... 240s Setting up libdeflate0:arm64 (1.19-1) ... 240s Setting up libqhull-r8.0:arm64 (2020.2-6) ... 240s Setting up python3-pycodcif (3.8.1+dfsg-1build1) ... 241s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 241s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 241s Setting up libaec0:arm64 (1.1.2-1) ... 241s Setting up unicode-data (15.1.0-1) ... 241s Setting up libsymspg2:arm64 (2.2.0-3) ... 241s Setting up python3-decorator (5.1.1-5) ... 241s Setting up libblas3:arm64 (3.12.0-3) ... 241s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 241s Setting up python3-packaging (23.2-1) ... 241s Setting up python3-brotli (1.1.0-2) ... 241s Setting up python3-cycler (0.11.0-2) ... 241s Setting up libimagequant0:arm64 (2.18.0-1) ... 241s Setting up fonts-dejavu-mono (2.37-8) ... 241s Setting up python3-kiwisolver (1.4.4-2) ... 241s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 241s Setting up fonts-dejavu-core (2.37-8) ... 241s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 241s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 241s Setting up python3-pluggy (1.4.0-1) ... 241s Setting up libwebp7:arm64 (1.3.2-0.4) ... 241s Setting up libxslt1.1:arm64 (1.1.39-0exp1) ... 241s Setting up libopenjp2-7:arm64 (2.5.0-2) ... 241s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 241s Setting up python3-dateutil (2.8.2-3) ... 241s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... 241s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 241s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 241s Setting up python3-mpmath (1.2.1-3) ... 242s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ... 242s Setting up libwebpmux3:arm64 (1.3.2-0.4) ... 242s Setting up python3-lib2to3 (3.11.5-1) ... 243s Setting up python3-appdirs (1.4.4-4) ... 243s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 243s Setting up libsz2:arm64 (1.1.2-1) ... 243s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 243s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 243s Setting up python3-distutils (3.11.5-1) ... 243s python3.12: can't get files for byte-compilation 243s Setting up python3.11-minimal (3.11.8-1) ... 244s Setting up python3-sympy (1.12-7) ... 250s Setting up liblapack3:arm64 (3.12.0-3) ... 250s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 250s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 250s Setting up python3-pytest (7.4.4-1) ... 250s Setting up libwebpdemux2:arm64 (1.3.2-0.4) ... 250s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... 250s Setting up python3-all (3.12.1-0ubuntu2) ... 250s Setting up python3-fs (2.4.16-3) ... 251s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 251s Setting up libraqm0:arm64 (0.10.1-1) ... 251s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 251s Setting up python3-pytest-mock (3.12.0-1.1) ... 251s Setting up python3-lxml:arm64 (5.1.0-1) ... 251s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 251s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 251s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ... 251s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 251s Setting up python3.11 (3.11.8-1) ... 252s Setting up libxft2:arm64 (2.3.6-1) ... 252s Setting up libtk8.6:arm64 (8.6.14-1) ... 252s Setting up python3-pil:arm64 (10.2.0-1) ... 252s Setting up python3-numpy (1:1.24.2-2) ... 254s Setting up libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 254s Setting up python3-contourpy (1.0.7-1build2) ... 254s Setting up python3-spglib (2.2.0-3) ... 254s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... 254s Setting up python3-scipy (1.11.4-6) ... 257s Setting up blt (2.5.3+dfsg-7) ... 257s Setting up python3-tk:arm64 (3.11.5-1) ... 258s Setting up python3-pil.imagetk:arm64 (10.2.0-1) ... 258s Setting up python3-cftime (1.6.3-1build1) ... 258s Setting up python3-netcdf4 (1.6.5-1build1) ... 258s Setting up python3-fonttools (4.46.0-1) ... 258s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 258s Setting up python3-matplotlib (3.6.3-1ubuntu3) ... 260s Setting up python3-ase (3.22.1-4) ... 261s Setting up ase (3.22.1-4) ... 261s Setting up autopkgtest-satdep (0) ... 261s Processing triggers for libc-bin (2.39-0ubuntu6) ... 261s Processing triggers for systemd (255.2-3ubuntu2) ... 262s Processing triggers for man-db (2.12.0-3) ... 268s (Reading database ... 83877 files and directories currently installed.) 268s Removing autopkgtest-satdep (0) ... 269s autopkgtest [21:32:47]: test command1: for py in $(py3versions -d); do cd "$AUTOPKGTEST_TMP"; $py -m ase test; done 269s autopkgtest [21:32:47]: test command1: [----------------------- 270s About to run pytest with these parameters: 270s -v 271s ============================= test session starts ============================== 271s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3.12 271s 271s Libraries 271s ========= 271s 271s ase-3.22.1 /usr/lib/python3/dist-packages/ase 271s numpy-1.24.2 /usr/lib/python3/dist-packages/numpy 271s scipy-1.11.4 /usr/lib/python3/dist-packages/scipy 271s matplotlib-3.6.3 /usr/lib/python3/dist-packages/matplotlib 271s spglib-2.2.0 /usr/lib/python3/dist-packages/spglib 271s ase_ext not installed 271s flask not installed 271s psycopg2 not installed 271s pyamg not installed 271s 271s 271s Calculators 271s =========== 271s Config: No configuration file specified 271s Datafiles: ase-datafiles package not installed 271s 271s [ ] abinit not installed 271s [ ] aims not installed 271s [ ] asap not installed 271s [ ] castep not installed 271s [ ] cp2k not installed 271s [ ] dftb not installed 271s [ ] dftd3 not installed 271s [ ] elk not installed 271s [ ] espresso not installed 271s [ ] exciting not installed 271s [ ] gpaw not installed 271s [ ] gromacs not installed 271s [ ] lammpslib not installed 271s [ ] lammpsrun not installed 271s [ ] nwchem not installed 271s [ ] octopus not installed 271s [ ] openmx not installed 271s [ ] siesta not installed 271s [ ] vasp not installed 271s 271s * Use --calculators option to select calculators. 271s 271s * See "ase test --help-calculators" on how to configure calculators. 271s 271s * This listing only includes external calculators known by the test 271s system. Others are "configured" by setting an environment variable 271s like "ASE_xxx_COMMAND" in order to allow tests to run. Please see 271s the documentation of that individual calculator. 271s 271s 271s rootdir: /usr/lib/python3/dist-packages/ase/test 271s configfile: pytest.ini 271s plugins: mock-3.12.0 278s collecting ... collected 1963 items 278s 278s test_analysis.py::test_analysis PASSED [ 0%] 278s test_bader.py::test_bader PASSED [ 0%] 278s test_bandgap.py::test_bandgap PASSED [ 0%] 278s test_bandpath_kpts_axis.py::test_bandpath_kpts_axis PASSED [ 0%] 280s test_basin.py::test_basin PASSED [ 0%] 280s test_calc_outputs_big.py::test_properties_big PASSED [ 0%] 280s test_calc_properties.py::test_print_props[natoms] PASSED [ 0%] 280s test_calc_properties.py::test_print_props[energy] PASSED [ 0%] 280s test_calc_properties.py::test_print_props[energies] PASSED [ 0%] 280s test_calc_properties.py::test_print_props[free_energy] PASSED [ 0%] 280s test_calc_properties.py::test_print_props[forces] PASSED [ 0%] 281s test_calc_properties.py::test_print_props[stress] PASSED [ 0%] 281s 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bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[ORCC] PASSED [ 33%] 302s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[HEX] PASSED [ 33%] 302s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[RHL1] PASSED [ 33%] 303s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[RHL2] PASSED [ 33%] 303s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[MCL] PASSED [ 33%] 303s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[MCLC1] PASSED [ 33%] 303s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[MCLC3] PASSED [ 33%] 303s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[MCLC5] PASSED [ 33%] 303s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[TRI1a] PASSED [ 33%] 303s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[TRI1b] PASSED [ 33%] 303s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[TRI2a] PASSED [ 34%] 304s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[TRI2b] PASSED [ 34%] 304s bandstructure/test_bandstructure_transform_mcl.py::test_bandstructure_transform_mcl PASSED [ 34%] 304s bandstructure/test_resolve_custom_kpoints.py::test_str PASSED [ 34%] 304s bandstructure/test_resolve_custom_kpoints.py::test_recognize_points_from_coords PASSED [ 34%] 304s bandstructure/test_resolve_custom_kpoints.py::test_autolabel_points_from_coords[kptcoords0] PASSED [ 34%] 304s bandstructure/test_resolve_custom_kpoints.py::test_autolabel_points_from_coords[kptcoords1] PASSED [ 34%] 304s bandstructure/test_resolve_custom_kpoints.py::test_bad_shape PASSED [ 34%] 304s bravais/test_2d_cell_pbc.py::test_bravais_2d_cell_pbc PASSED [ 34%] 304s bravais/test_classification_engine.py::test_generate_niggli_table[FCC-1] PASSED [ 34%] 304s 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calculator/test_al.py::test_al_old[aims] SKIPPED (use --calculators=...) [ 37%] 306s calculator/test_bond_polarizability.py::test_CC_bond PASSED [ 37%] 306s calculator/test_bond_polarizability.py::test_symmetry PASSED [ 37%] 306s calculator/test_bond_polarizability.py::test_2to3 PASSED [ 37%] 306s calculator/test_calculator.py::test_directory_and_label PASSED [ 37%] 306s calculator/test_calculator.py::test_deprecated_get_spin_polarized PASSED [ 37%] 306s calculator/test_ch4_energy.py::test_ch4[gamess_us] SKIPPED (use --ca...) [ 37%] 306s calculator/test_ch4_energy.py::test_ch4[gaussian] SKIPPED (use --cal...) [ 37%] 306s calculator/test_ch4_energy.py::test_ch4_reaction[siesta] SKIPPED (No...) [ 37%] 306s calculator/test_ch4_energy.py::test_ch4_reaction[openmx] SKIPPED (No...) [ 37%] 306s calculator/test_ch4_energy.py::test_ch4_reaction[octopus] SKIPPED (N...) [ 37%] 306s calculator/test_ch4_energy.py::test_ch4_reaction[nwchem] SKIPPED (No...) [ 37%] 306s calculator/test_ch4_energy.py::test_ch4_reaction[gpaw] SKIPPED (Not ...) 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[ 39%] 306s calculator/test_h2.py::test_h2dft[cp2k] SKIPPED (Not installed: cp2k) [ 39%] 306s calculator/test_h2_bond_force.py::test_h2_bond[siesta] SKIPPED (Not ...) [ 39%] 306s calculator/test_h2_bond_force.py::test_h2_bond[nwchem] SKIPPED (Not ...) [ 39%] 306s calculator/test_h2_bond_force.py::test_h2_bond[gpaw] SKIPPED (Not in...) [ 39%] 306s calculator/test_h2_bond_force.py::test_h2_bond[espresso] SKIPPED (No...) [ 39%] 306s calculator/test_h2_bond_force.py::test_h2_bond[cp2k] SKIPPED (Not in...) [ 39%] 307s calculator/test_h2_bond_force.py::test_h2_bond[abinit] SKIPPED (Not ...) [ 39%] 307s calculator/test_h2morse.py::test_gs_minimum PASSED [ 39%] 307s calculator/test_h2morse.py::test_gs_io_overlap PASSED [ 39%] 307s calculator/test_h2morse.py::test_excited_state PASSED [ 39%] 307s calculator/test_h2morse.py::test_excited_io PASSED [ 39%] 307s calculator/test_h2morse.py::test_traditional PASSED [ 39%] 307s calculator/test_lj.py::test_minimum_energy PASSED [ 39%] 307s calculator/test_lj.py::test_minimum_forces PASSED [ 39%] 307s calculator/test_lj.py::test_system_changes PASSED [ 39%] 307s calculator/test_lj.py::test_finite_difference PASSED [ 39%] 307s calculator/test_lj.py::test_bulk_energies PASSED [ 39%] 307s calculator/test_lj.py::test_bulk_forces PASSED [ 39%] 307s calculator/test_lj.py::test_bulk_stress PASSED [ 39%] 307s calculator/test_mopac.py::test_mopac SKIPPED (use --calculators=mopa...) 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fio/test_ioformats.py::test_ioformat[dmol-car] PASSED [ 68%] 365s fio/test_ioformats.py::test_ioformat[dmol-incoor] PASSED [ 68%] 365s fio/test_ioformats.py::test_ioformat[elk] PASSED [ 68%] 365s fio/test_ioformats.py::test_ioformat[elk-in] PASSED [ 68%] 365s fio/test_ioformats.py::test_ioformat[eon] PASSED [ 68%] 365s fio/test_ioformats.py::test_ioformat[eps] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[espresso-in] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[espresso-out] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[exciting] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[extxyz] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[findsym] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[gamess-us-out] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[gamess-us-in] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[gamess-us-punch] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[gaussian-in] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[gaussian-out] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[acemolecule-out] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[acemolecule-input] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[gen] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[gif] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[gpaw-out] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[gpumd] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[gpw] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[gromacs] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[gromos] PASSED [ 69%] 365s fio/test_ioformats.py::test_ioformat[html] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[json] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[jsv] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[lammps-dump-text] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[lammps-dump-binary] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[lammps-data] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[magres] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[mol] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[mp4] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[mustem] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[mysql] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[netcdftrajectory] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[nomad-json] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[nwchem-in] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[nwchem-out] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[octopus-in] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[proteindatabank] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[png] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[postgresql] PASSED [ 70%] 365s fio/test_ioformats.py::test_ioformat[pov] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[prismatic] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[py] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[sys] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[qbox] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[res] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[rmc6f] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[sdf] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[siesta-xv] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[struct] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[struct_out] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[traj] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[turbomole] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[turbomole-gradient] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[v-sim] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[vasp] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[vasp-out] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[vasp-xdatcar] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[vasp-xml] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[vti] PASSED [ 71%] 365s fio/test_ioformats.py::test_ioformat[vtu] PASSED [ 72%] 365s fio/test_ioformats.py::test_ioformat[wout] PASSED [ 72%] 365s fio/test_ioformats.py::test_ioformat[x3d] PASSED [ 72%] 365s fio/test_ioformats.py::test_ioformat[xsd] PASSED [ 72%] 365s fio/test_ioformats.py::test_ioformat[xsf] PASSED [ 72%] 365s fio/test_ioformats.py::test_ioformat[xtd] PASSED [ 72%] 365s fio/test_ioformats.py::test_ioformat[xyz] PASSED [ 72%] 365s fio/test_iread_path.py::test_iread_path PASSED [ 72%] 365s fio/test_json_arrays.py::test_json_arrays PASSED [ 72%] 365s fio/test_jsonio.py::test_jsonio PASSED [ 72%] 365s fio/test_jsonio.py::test_dict_with_int_key PASSED [ 72%] 365s fio/test_jsonio_atoms.py::test_jsonio_atoms PASSED [ 72%] 365s fio/test_lammpsdump.py::test_recognize_lammpsdump[ITEM: TIMESTEP] PASSED [ 72%] 365s fio/test_lammpsdump.py::test_recognize_lammpsdump[anything\nITEM: TIMESTEP\nanything] PASSED [ 72%] 365s fio/test_lammpsdump.py::test_lammpsdump_order PASSED [ 72%] 365s fio/test_lammpsdump.py::test_lammpsdump_element PASSED [ 72%] 365s fio/test_lammpsdump.py::test_lammpsdump_errors PASSED [ 72%] 365s fio/test_lammpsdump.py::test_lammpsdump_position_reading[xs ys zs-True] PASSED [ 72%] 365s fio/test_lammpsdump.py::test_lammpsdump_position_reading[xsu ysu zsu-True] PASSED [ 72%] 365s fio/test_lammpsdump.py::test_lammpsdump_position_reading[x y z-False] PASSED [ 73%] 365s fio/test_lammpsdump.py::test_lammpsdump_position_reading[xu yu zu-False] PASSED [ 73%] 365s fio/test_lammpsdump.py::test_lammpsdump_bounds[pp pp pp-expected0] PASSED [ 73%] 365s fio/test_lammpsdump.py::test_lammpsdump_bounds[ss mm ff-expected1] PASSED [ 73%] 365s fio/test_lammpsdump.py::test_lammpsdump_bounds[fs sm mf-expected2] PASSED [ 73%] 365s fio/test_lammpsdump.py::test_lammpsdump_bounds[sf ms ff-expected3] PASSED [ 73%] 365s fio/test_lammpsdump.py::test_lammpsdump_bounds[pp ms ff-expected4] PASSED [ 73%] 365s fio/test_lammpsdump.py::test_lammpsdump_bounds[ff pp ff-expected5] PASSED [ 73%] 365s fio/test_lammpsdump.py::test_lammpsdump_bounds[ff mm pp-expected6] PASSED [ 73%] 365s fio/test_lammpsdump.py::test_lammpsdump_bounds[pp ff pp-expected7] PASSED [ 73%] 365s fio/test_magmom.py::test_magmom PASSED [ 73%] 365s fio/test_magres.py::test_magres PASSED [ 73%] 365s fio/test_match_magic.py::test_match_magic PASSED [ 73%] 365s fio/test_mustem.py::test_mustem_several_elements PASSED [ 73%] 365s fio/test_mustem.py::test_mustem_single_elements PASSED [ 73%] 366s fio/test_netcdftrajectory.py::test_netcdftrajectory PASSED [ 73%] 366s fio/test_netcdftrajectory.py::test_netcdf_with_variable_atomic_numbers PASSED [ 73%] 366s fio/test_netcdftrajectory.py::test_netcdf_with_nonconsecutive_index PASSED [ 73%] 366s fio/test_netcdftrajectory.py::test_types_to_numbers_argument PASSED [ 73%] 366s fio/test_nomad.py::test_nomad PASSED [ 73%] 366s fio/test_nwchem.py::test_nwchem PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[abinit-in] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[abinit-out] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[acemolecule-input] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[acemolecule-out] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[aims] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[aims-output] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[bundletrajectory] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[castep-castep] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[castep-cell] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[castep-geom] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[castep-md] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[castep-phonon] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[cfg] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[cif] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[cmdft] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[cml] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[cp2k-dcd] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[cp2k-restart] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[crystal] PASSED [ 74%] 366s fio/test_oi.py::test_ioformat[cube] PASSED [ 75%] 366s fio/test_oi.py::test_ioformat[dacapo-text] PASSED [ 75%] 366s fio/test_oi.py::test_ioformat[db] PASSED [ 75%] 366s fio/test_oi.py::test_ioformat[dlp-history] PASSED [ 75%] 366s fio/test_oi.py::test_ioformat[dlp4] PASSED [ 75%] 366s fio/test_oi.py::test_ioformat[elk] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[elk-in] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[eps] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[espresso-in] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[espresso-out] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[exciting] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[extxyz] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[findsym] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[gamess-us-in] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[gamess-us-out] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[gamess-us-punch] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[gaussian-in] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[gaussian-out] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[gen] PASSED [ 75%] 367s fio/test_oi.py::test_ioformat[gpaw-out] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[gpumd] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[gpw] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[gromacs] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[gromos] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[html] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[json] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[jsv] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[lammps-dump-binary] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[lammps-dump-text] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[magres] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[mol] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[netcdftrajectory] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[nomad-json] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[nwchem-in] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[nwchem-out] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[octopus-in] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[png] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[pov] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[proteindatabank] PASSED [ 76%] 367s fio/test_oi.py::test_ioformat[py] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[qbox] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[res] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[rmc6f] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[sdf] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[siesta-xv] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[struct] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[struct_out] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[sys] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[traj] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[turbomole] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[turbomole-gradient] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[vasp] PASSED [ 77%] 367s fio/test_oi.py::test_ioformat[vasp-out] PASSED [ 77%] 368s fio/test_oi.py::test_ioformat[vasp-xdatcar] PASSED [ 77%] 368s fio/test_oi.py::test_ioformat[vasp-xml] PASSED [ 77%] 368s fio/test_oi.py::test_ioformat[wout] PASSED [ 77%] 368s fio/test_oi.py::test_ioformat[x3d] PASSED [ 77%] 368s fio/test_oi.py::test_ioformat[xsd] PASSED [ 77%] 368s fio/test_oi.py::test_ioformat[xsf] PASSED [ 77%] 368s fio/test_oi.py::test_ioformat[xtd] PASSED [ 78%] 368s fio/test_oi.py::test_ioformat[xyz] PASSED [ 78%] 368s fio/test_oldtraj.py::test_oldtraj PASSED [ 78%] 368s fio/test_openmx.py::test_openmx_out PASSED [ 78%] 368s fio/test_openmx.py::test_openmx_read_eigenvalues PASSED [ 78%] 368s fio/test_opls.py::test_opls_write_lammps PASSED [ 78%] 368s fio/test_parallel.py::test_parallel PASSED [ 78%] 368s fio/test_pdb_cell_io.py::test_pdb_cell_io PASSED [ 78%] 368s fio/test_pdb_extra.py::test_pdb_read PASSED [ 78%] 368s fio/test_pdb_extra.py::test_pdb_read_with_arrays PASSED [ 78%] 368s fio/test_pickle_bundle_trajectory.py::test_raises PASSED [ 78%] 368s fio/test_pickle_bundle_trajectory.py::test_write_read_pickle PASSED [ 78%] 368s fio/test_pickle_bundle_trajectory.py::test_write_read_bundle XFAIL (...) [ 78%] 368s fio/test_pickle_bundle_trajectory.py::test_append_pickle PASSED [ 78%] 368s fio/test_pickle_bundle_trajectory.py::test_append_bundle XFAIL (same...) [ 78%] 368s fio/test_pickle_bundle_trajectory.py::test_old_trajectory_conversion_utility PASSED [ 78%] 369s fio/test_pickle_bundle_trajectory.py::test_bundletrajectory_info PASSED [ 78%] 369s fio/test_povray.py::test_povray_io SKIPPED (povray not installed) [ 78%] 369s fio/test_povray.py::test_povray_highorder SKIPPED (povray not installed) [ 78%] 369s fio/test_povray.py::test_deprecated PASSED [ 79%] 369s fio/test_prismatic.py::test_write_read_cycle_xyz_prismatic PASSED [ 79%] 369s fio/test_prismatic.py::test_write_error PASSED [ 79%] 369s fio/test_pycodcif_read.py::test_pycodcif PASSED [ 79%] 369s fio/test_qbox.py::test_read_output PASSED [ 79%] 369s fio/test_qbox.py::test_format PASSED [ 79%] 369s fio/test_readwrite_errors.py::test_readwrite_errors PASSED [ 79%] 369s fio/test_readwrite_errors.py::test_parse_filename_with_at_in_ext PASSED [ 79%] 369s fio/test_readwrite_errors.py::test_parse_filename_with_at_in_path PASSED [ 79%] 369s 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precon/test_precon_assembly.py::test_assembly_fixed_atoms[C1] PASSED [ 91%] 463s precon/test_precon_assembly.py::test_assembly_fixed_atoms[Exp] PASSED [ 91%] 463s precon/test_precon_assembly.py::test_assembly_fixed_atoms[Pfrommer] PASSED [ 91%] 463s precon/test_precon_assembly.py::test_assembly_fixed_atoms[FF] PASSED [ 91%] 463s precon/test_precon_assembly.py::test_assembly_fixed_atoms[Exp_FF] PASSED [ 91%] 463s precon/test_precon_assembly.py::test_apply_atoms[None] PASSED [ 91%] 463s precon/test_precon_assembly.py::test_apply_atoms[C1] PASSED [ 91%] 463s precon/test_precon_assembly.py::test_apply_atoms[Exp] PASSED [ 92%] 463s precon/test_precon_assembly.py::test_apply_atoms[Pfrommer] PASSED [ 92%] 463s precon/test_precon_assembly.py::test_apply_atoms[FF] PASSED [ 92%] 463s precon/test_precon_assembly.py::test_apply_atoms[Exp_FF] PASSED [ 92%] 463s precon/test_precon_assembly.py::test_apply_fixed_atoms[None] PASSED [ 92%] 463s precon/test_precon_assembly.py::test_apply_fixed_atoms[C1] PASSED [ 92%] 463s precon/test_precon_assembly.py::test_apply_fixed_atoms[Exp] PASSED [ 92%] 464s precon/test_precon_assembly.py::test_apply_fixed_atoms[Pfrommer] PASSED [ 92%] 464s precon/test_precon_assembly.py::test_apply_fixed_atoms[FF] PASSED [ 92%] 464s precon/test_precon_assembly.py::test_apply_fixed_atoms[Exp_FF] PASSED [ 92%] 464s precon/test_smallcell.py::test_precon_warn PASSED [ 92%] 464s precon/test_smallcell.py::test_precon_nowarn PASSED [ 92%] 465s precon/test_unitcellfilter.py::test_precon PASSED [ 92%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_sequence[0] PASSED [ 92%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_sequence[1] PASSED [ 92%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_sequence[3] PASSED [ 92%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_plot[1] PASSED [ 92%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_plot[5] PASSED [ 92%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_plot[None] PASSED [ 92%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_slicing PASSED [ 92%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_collection_equality PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[True] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[1] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[0.5] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[string] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[rawdos] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_addition PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_sample[options0] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_sample[options1] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_sample_grid[options0] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_sample_grid[options1] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_sample_empty PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_from_data[x0-weights0-bad_info0] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_from_data[x1-weights1-bad_info1] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_sum_all[collection_data0-collection_info0-expected0] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_sum_all[collection_data1-collection_info1-expected1] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_sum_all[collection_data2-collection_info2-expected2] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_sum_empty PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_total[collection_data0-collection_info0] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_total[collection_data1-collection_info1] PASSED [ 93%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_total[collection_data2-collection_info2] PASSED [ 94%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_select[select_info0-select_query0-select_result0-select_not_result0-sum_by_result0] PASSED [ 94%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_select[select_info1-select_query1-select_result1-None-sum_by_result1] PASSED [ 94%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_select[select_info2-select_query2-None-select_not_result2-sum_by_result2] PASSED [ 94%] 465s spectrum/test_doscollection.py::TestDOSCollection::test_select[select_info3-select_query3-select_result3-select_not_result3-sum_by_result3] PASSED [ 94%] 465s spectrum/test_doscollection.py::TestRawDOSCollection::test_init PASSED [ 94%] 465s spectrum/test_doscollection.py::TestGridDOSCollection::test_init_errors PASSED [ 94%] 465s spectrum/test_doscollection.py::TestGridDOSCollection::test_select PASSED [ 94%] 465s spectrum/test_doscollection.py::TestGridDOSCollection::test_sequence PASSED [ 94%] 465s spectrum/test_doscollection.py::TestGridDOSCollection::test_slicing PASSED [ 94%] 465s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x0-weights0-info0-None] PASSED [ 94%] 465s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x1-weights1-info1-None] PASSED [ 94%] 465s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x2-weights2-None-IndexError] PASSED [ 94%] 465s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x3-weights3-None-IndexError] PASSED [ 94%] 465s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x4-weights4-None-IndexError] PASSED [ 94%] 465s spectrum/test_doscollection.py::TestGridDOSCollection::test_plot_no_resample PASSED [ 94%] 465s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[None-expected0] PASSED [ 94%] 465s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[info1-expected1] PASSED [ 94%] 465s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[info2-expected2] PASSED [ 94%] 466s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[notadict-TypeError] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[False-TypeError] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info0-] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info1-key1: value1] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info2-key1: value1; key2: value2] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info3-xyz] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info4-xyz] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_init PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_access PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_copy PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_equality_wrongtype[True] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_equality_wrongtype[1] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_equality_wrongtype[0.5] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_equality_wrongtype[string] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_10-data_20-True] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_11-data_21-False] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_12-data_22-False] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_13-data_23-False] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_14-data_24-False] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_15-data_25-False] PASSED [ 95%] 466s spectrum/test_dosdata.py::TestRawDosData::test_addition PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data0-args0-result0] PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data1-args1-result1] PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data2-args2-result2] PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data3-args3-result3] PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data4-args4-result4] PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_sampling_error PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_sample_grid PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_plot[1] PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_plot[5] PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_plot[None] PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_plot_deltas[1] PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_plot_deltas[5] PASSED [ 96%] 466s spectrum/test_dosdata.py::TestRawDosData::test_plot_deltas[None] PASSED [ 96%] 466s spectrum/test_dosdata.py::TestGridDosData::test_init PASSED [ 96%] 466s spectrum/test_dosdata.py::TestGridDosData::test_access PASSED [ 96%] 466s spectrum/test_dosdata.py::TestGridDosData::test_copy PASSED [ 96%] 466s spectrum/test_dosdata.py::TestGridDosData::test_addition PASSED [ 96%] 466s spectrum/test_dosdata.py::TestGridDosData::test_check_spacing PASSED [ 96%] 466s spectrum/test_dosdata.py::TestGridDosData::test_resampling_consistency PASSED [ 96%] 466s spectrum/test_dosdata.py::TestGridDosData::test_plot[1] PASSED [ 97%] 466s spectrum/test_dosdata.py::TestGridDosData::test_plot[5] PASSED [ 97%] 466s spectrum/test_dosdata.py::TestGridDosData::test_plot[None] PASSED [ 97%] 466s spectrum/test_dosdata.py::TestGridDosData::test_plot_broad_dos PASSED [ 97%] 466s spectrum/test_dosdata.py::TestGridDosData::test_smearing_args_interpreter[inputs0-expected0] PASSED [ 97%] 466s spectrum/test_dosdata.py::TestGridDosData::test_smearing_args_interpreter[inputs1-expected1] PASSED [ 97%] 466s spectrum/test_dosdata.py::TestGridDosData::test_smearing_args_interpreter[inputs2-expected2] PASSED [ 97%] 466s spectrum/test_dosdata.py::TestGridDosData::test_smearing_args_interpreter[inputs3-expected3] PASSED [ 97%] 466s spectrum/test_dosdata.py::TestMultiDosData::test_addition PASSED [ 97%] 466s standardization/test_properties.py::test_calc_properties PASSED [ 97%] 467s transport/test_transport_calculator.py::test_transport_calculator PASSED [ 97%] 467s vibrations/test_albrecht.py::test_one_state PASSED [ 97%] 467s vibrations/test_albrecht.py::test_all_states PASSED [ 97%] 467s vibrations/test_albrecht.py::test_multiples PASSED [ 97%] 468s vibrations/test_albrecht.py::test_summary PASSED [ 97%] 468s vibrations/test_bond_polarizability_raman.py::test_bulk PASSED [ 97%] 468s vibrations/test_bond_polarizability_raman.py::test_bulk_kpts PASSED [ 97%] 468s vibrations/test_bond_polarizability_raman.py::test_c3 PASSED [ 97%] 468s vibrations/test_combine.py::test_combine PASSED [ 97%] 469s vibrations/test_folding.py::test_folding PASSED [ 98%] 469s vibrations/test_franck_condon.py::test_franck_condon PASSED [ 98%] 469s vibrations/test_franck_condon.py::test_ch4_all PASSED [ 98%] 469s vibrations/test_franck_condon.py::test_ch4_minfreq PASSED [ 98%] 469s vibrations/test_pickle2json.py::test_pickle2json PASSED [ 98%] 469s vibrations/test_placzek.py::test_summary PASSED [ 98%] 469s vibrations/test_placzek.py::test_names PASSED [ 98%] 469s vibrations/test_placzek.py::test_overlap PASSED [ 98%] 469s vibrations/test_placzek.py::test_compare_placzek_implementation_intensities PASSED [ 98%] 469s vibrations/test_profeta_albrecht.py::test_compare_placzek_albrecht_intensities PASSED [ 98%] 469s vibrations/test_vib.py::TestHarmonicVibrations::test_harmonic_vibrations PASSED [ 98%] 469s vibrations/test_vib.py::TestHarmonicVibrations::test_consistency_with_vibrationsdata PASSED [ 98%] 469s vibrations/test_vib.py::TestHarmonicVibrations::test_json_manipulation PASSED [ 98%] 469s vibrations/test_vib.py::TestHarmonicVibrations::test_vibrations_methods PASSED [ 98%] 469s vibrations/test_vib.py::TestHarmonicVibrations::test_vibrations_restart_dir PASSED [ 98%] 469s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask0-expected_indices0] PASSED [ 98%] 469s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask1-expected_indices1] PASSED [ 98%] 469s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask2-expected_indices2] PASSED [ 98%] 469s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask3-expected_indices3] PASSED [ 98%] 469s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask4-expected_indices4] PASSED [ 98%] 469s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask5-expected_indices5] PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_tabulate_energies PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_get_jmol_images[kwargs0-expected0] PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_init PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_energies_and_modes PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_imaginary_energies PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_zero_mass PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_new_mass PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_fixed_atoms PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_dos PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_pdos PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_todict PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_dict_roundtrip PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_dict_indices[indices0-expected_mask0] PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_dict_indices[None-expected_mask1] PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_jmol_roundtrip PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_bad_hessian PASSED [ 99%] 469s vibrations/test_vib.py::TestVibrationsData::test_bad_hessian2d PASSED [ 99%] 469s vibrations/test_vib.py::TestSlab::test_vibration_on_surface PASSED [ 99%] 470s vibrations/test_vibrations_example.py::test_vibrations_example PASSED [100%] 470s 470s =============================== warnings summary =============================== 470s :488 470s :488: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject 470s 470s test_doctests.py::test_doctest[ase.phasediagram] 470s test_pourbaix.py::test_pourbaix 470s /usr/lib/python3/dist-packages/ase/phasediagram.py:253: OptimizeWarning: Unrecognized options detected: {'lstsq': True}. These will be passed to HiGHS verbatim. 470s result = linprog(c=energies, 470s 470s test_forcecurve.py::test_forcecurve 470s /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). 470s EPOCH = datetime.datetime.utcfromtimestamp(0) 470s 470s test_parsemath.py: 109 warnings 470s constraints/test_parameteric_constr.py: 66 warnings 470s fio/test_aims_io.py: 66 warnings 470s /usr/lib/python3/dist-packages/ase/utils/parsemath.py:146: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead 470s if isinstance(node, ast.Num): # 470s 470s test_parsemath.py: 50 warnings 470s constraints/test_parameteric_constr.py: 64 warnings 470s fio/test_aims_io.py: 45 warnings 470s /usr/lib/python3/dist-packages/ase/utils/parsemath.py:147: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead 470s return node.n 470s 470s calculator/abinit/test_main.py::test_au[abinit-fhi] 470s /usr/lib/python3.12/pathlib.py:357: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 470s def __init__(self, *args): 470s Enable tracemalloc to get traceback where the object was allocated. 470s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 470s 470s forcefields/test_tipnp.py::test_tipnp 470s /usr/lib/python3/dist-packages/numpy/core/arrayprint.py:989: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 470s int_part, frac_part = zip(*(s.split('.') for s in strs)) 470s Enable tracemalloc to get traceback where the object was allocated. 470s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 470s 470s gui/test_run.py::test_settings 470s /usr/lib/python3/dist-packages/pluggy/_manager.py:514: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='w' encoding='UTF-8'> 470s plugins_to_remove = {plug for plug in remove_plugins if hasattr(plug, name)} 470s Enable tracemalloc to get traceback where the object was allocated. 470s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 470s 470s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 470s = 1659 passed, 300 skipped, 2 xfailed, 2 xpassed, 407 warnings in 199.39s (0:03:19) = 473s autopkgtest [21:36:11]: test command1: -----------------------] 473s command1 PASS 473s autopkgtest [21:36:11]: test command1: - - - - - - - - - - results - - - - - - - - - - 474s autopkgtest [21:36:12]: @@@@@@@@@@@@@@@@@@@@ summary 474s command1 PASS 486s Creating nova instance adt-noble-arm64-python-ase-20240323-212818-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240323.img (UUID 375bc181-4f1c-404a-9515-ae86628c71e3)...