0s autopkgtest [21:46:48]: starting date and time: 2024-03-13 21:46:48+0000
  0s autopkgtest [21:46:48]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [21:46:48]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3edu120t/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:hdf5,src:openmpi,src:openssl,src:pmix --apt-upgrade pynwb --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.10.0-1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu2 openmpi/4.1.6-5.1ubuntu3 openssl/3.0.13-0ubuntu1 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-19.secgroup --name adt-noble-arm64-pynwb-20240313-214647-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 79s autopkgtest [21:48:07]: testbed dpkg architecture: arm64
 80s autopkgtest [21:48:08]: testbed apt version: 2.7.12
 80s autopkgtest [21:48:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 80s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 81s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [42.3 kB]
 81s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [450 kB]
 81s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B]
 81s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2818 kB]
 81s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [603 kB]
 81s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
 81s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB]
 81s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
 81s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3218 kB]
 81s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
 81s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [42.3 kB]
 81s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
 83s Fetched 7327 kB in 2s (4810 kB/s)
 83s Reading package lists...
 86s Reading package lists...
 86s Building dependency tree...
 86s Reading state information...
 86s Calculating upgrade...
 87s The following packages will be REMOVED:
 87s   libssl3
 87s The following NEW packages will be installed:
 87s   libssl3t64
 87s The following packages will be upgraded:
 87s   console-setup console-setup-linux keyboard-configuration openssl
 87s 4 upgraded, 1 newly installed, 1 to remove and 0 not upgraded.
 87s Need to get 4955 kB of archives.
 87s After this operation, 74.8 kB of additional disk space will be used.
 87s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
 88s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
 88s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 console-setup-linux all 1.226ubuntu1 [1880 kB]
 88s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 console-setup all 1.226ubuntu1 [110 kB]
 88s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 keyboard-configuration all 1.226ubuntu1 [212 kB]
 89s Preconfiguring packages ...
 90s Fetched 4955 kB in 1s (6048 kB/s)
 90s (Reading database ... 
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(Reading database ... 74759 files and directories currently installed.)
 90s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
 90s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
 91s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
 91s  wget depends on libssl3 (>= 3.0.0).
 91s  u-boot-tools depends on libssl3 (>= 3.0.0).
 91s  tnftp depends on libssl3 (>= 3.0.0).
 91s  tcpdump depends on libssl3 (>= 3.0.0).
 91s  systemd-resolved depends on libssl3 (>= 3.0.0).
 91s  systemd depends on libssl3 (>= 3.0.0).
 91s  sudo depends on libssl3 (>= 3.0.0).
 91s  sbsigntool depends on libssl3 (>= 3.0.0).
 91s  rsync depends on libssl3 (>= 3.0.0).
 91s  python3-cryptography depends on libssl3 (>= 3.0.0).
 91s  openssh-server depends on libssl3 (>= 3.0.10).
 91s  openssh-client depends on libssl3 (>= 3.0.10).
 91s  mtd-utils depends on libssl3 (>= 3.0.0).
 91s  mokutil depends on libssl3 (>= 3.0.0).
 91s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
 91s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
 91s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
 91s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
 91s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
 91s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
 91s  libnvme1 depends on libssl3 (>= 3.0.0).
 91s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
 91s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
 91s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
 91s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
 91s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
 91s  kmod depends on libssl3 (>= 3.0.0).
 91s  dhcpcd-base depends on libssl3 (>= 3.0.0).
 91s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
 91s 
 91s (Reading database ... 
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(Reading database ... 74759 files and directories currently installed.)
 91s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
 91s Selecting previously unselected package libssl3t64:arm64.
 91s (Reading database ... 
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(Reading database ... 74748 files and directories currently installed.)
 91s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
 91s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
 91s Preparing to unpack .../console-setup-linux_1.226ubuntu1_all.deb ...
 91s Unpacking console-setup-linux (1.226ubuntu1) over (1.223ubuntu2) ...
 91s Preparing to unpack .../console-setup_1.226ubuntu1_all.deb ...
 91s Unpacking console-setup (1.226ubuntu1) over (1.223ubuntu2) ...
 91s Preparing to unpack .../keyboard-configuration_1.226ubuntu1_all.deb ...
 91s Unpacking keyboard-configuration (1.226ubuntu1) over (1.223ubuntu2) ...
 91s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
 91s Setting up keyboard-configuration (1.226ubuntu1) ...
 92s Your console font configuration will be updated the next time your system
 92s boots. If you want to update it now, run 'setupcon' from a virtual console.
 92s update-initramfs: deferring update (trigger activated)
 92s Setting up openssl (3.0.13-0ubuntu1) ...
 92s Setting up console-setup-linux (1.226ubuntu1) ...
 94s Setting up console-setup (1.226ubuntu1) ...
 95s update-initramfs: deferring update (trigger activated)
 95s Processing triggers for man-db (2.12.0-3) ...
 95s Processing triggers for libc-bin (2.39-0ubuntu2) ...
 95s Processing triggers for initramfs-tools (0.142ubuntu20) ...
 95s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic
 95s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
115s System running in EFI mode, skipping.
115s Reading package lists...
116s Building dependency tree...
116s Reading state information...
116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
117s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
117s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
117s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
117s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
119s Reading package lists...
119s Reading package lists...
119s Building dependency tree...
119s Reading state information...
120s Calculating upgrade...
120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
120s Reading package lists...
120s Building dependency tree...
120s Reading state information...
121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
121s autopkgtest [21:48:49]: rebooting testbed after setup commands that affected boot
336s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
344s autopkgtest [21:52:32]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
348s autopkgtest [21:52:36]: @@@@@@@@@@@@@@@@@@@@ apt-source pynwb
350s Get:1 http://ftpmaster.internal/ubuntu noble/universe pynwb 2.5.0-1 (dsc) [2156 B]
350s Get:2 http://ftpmaster.internal/ubuntu noble/universe pynwb 2.5.0-1 (tar) [621 kB]
350s Get:3 http://ftpmaster.internal/ubuntu noble/universe pynwb 2.5.0-1 (diff) [6328 B]
351s gpgv: Signature made Fri Dec 22 15:42:20 2023 UTC
351s gpgv:                using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA
351s gpgv: Can't check signature: No public key
351s dpkg-source: warning: cannot verify inline signature for ./pynwb_2.5.0-1.dsc: no acceptable signature found
351s autopkgtest [21:52:39]: testing package pynwb version 2.5.0-1
351s autopkgtest [21:52:39]: build not needed
352s autopkgtest [21:52:40]: test autodep8-python3: preparing testbed
358s Reading package lists...
358s Building dependency tree...
358s Reading state information...
358s Starting pkgProblemResolver with broken count: 0
358s Starting 2 pkgProblemResolver with broken count: 0
358s Done
360s The following additional packages will be installed:
360s   libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3
360s   liblbfgsb0 liblzf1 libpython3.11-minimal libpython3.11-stdlib libsz2
360s   python3-all python3-dateutil python3-decorator python3-distutils
360s   python3-h5py python3-h5py-serial python3-hdmf python3-lib2to3 python3-numpy
360s   python3-pandas python3-pandas-lib python3-pynwb python3-ruamel.yaml
360s   python3-ruamel.yaml.clib python3-scipy python3.11 python3.11-minimal
360s Suggested packages:
360s   python-h5py-doc gcc gfortran python3-dev python3-pytest python-pandas-doc
360s   python3-statsmodels python-scipy-doc python3.11-venv python3.11-doc
360s   binfmt-support
360s Recommended packages:
360s   python3-matplotlib python3-bottleneck python3-numexpr python3-odf
360s   python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables
360s   g++ | c++-compiler python3-pil
360s The following NEW packages will be installed:
360s   autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64
360s   libhdf5-hl-100t64 liblapack3 liblbfgsb0 liblzf1 libpython3.11-minimal
360s   libpython3.11-stdlib libsz2 python3-all python3-dateutil python3-decorator
360s   python3-distutils python3-h5py python3-h5py-serial python3-hdmf
360s   python3-lib2to3 python3-numpy python3-pandas python3-pandas-lib
360s   python3-pynwb python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy
360s   python3.11 python3.11-minimal
361s 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded.
361s Need to get 45.3 MB/45.3 MB of archives.
361s After this operation, 229 MB of additional disk space will be used.
361s Get:1 /tmp/autopkgtest.CfTnAA/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B]
361s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB]
362s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB]
363s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB]
363s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB]
363s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB]
363s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
363s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
363s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B]
363s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu2 [1192 kB]
363s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu2 [55.8 kB]
363s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
364s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB]
364s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 liblzf1 arm64 3.6-4 [7426 B]
364s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB]
364s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB]
364s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B]
364s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB]
364s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
364s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB]
364s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu2 [887 kB]
364s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-h5py all 3.10.0-1ubuntu2 [7980 B]
364s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-4ubuntu2 [7669 kB]
365s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB]
365s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6 [18.6 MB]
366s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ruamel.yaml.clib arm64 0.2.8-1 [187 kB]
366s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ruamel.yaml all 0.17.21-1 [86.6 kB]
366s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-hdmf all 3.11.0-2 [270 kB]
366s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pynwb all 2.5.0-1 [109 kB]
367s Fetched 45.3 MB in 6s (8196 kB/s)
367s Selecting previously unselected package libpython3.11-minimal:arm64.
367s (Reading database ... 
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(Reading database ... 74761 files and directories currently installed.)
367s Preparing to unpack .../00-libpython3.11-minimal_3.11.8-1_arm64.deb ...
367s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ...
367s Selecting previously unselected package python3.11-minimal.
367s Preparing to unpack .../01-python3.11-minimal_3.11.8-1_arm64.deb ...
367s Unpacking python3.11-minimal (3.11.8-1) ...
367s Selecting previously unselected package libpython3.11-stdlib:arm64.
367s Preparing to unpack .../02-libpython3.11-stdlib_3.11.8-1_arm64.deb ...
367s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ...
367s Selecting previously unselected package python3.11.
367s Preparing to unpack .../03-python3.11_3.11.8-1_arm64.deb ...
367s Unpacking python3.11 (3.11.8-1) ...
367s Selecting previously unselected package libaec0:arm64.
367s Preparing to unpack .../04-libaec0_1.1.2-1_arm64.deb ...
367s Unpacking libaec0:arm64 (1.1.2-1) ...
367s Selecting previously unselected package libblas3:arm64.
367s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ...
367s Unpacking libblas3:arm64 (3.12.0-3) ...
368s Selecting previously unselected package libgfortran5:arm64.
368s Preparing to unpack .../06-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
368s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
368s Selecting previously unselected package libsz2:arm64.
368s Preparing to unpack .../07-libsz2_1.1.2-1_arm64.deb ...
368s Unpacking libsz2:arm64 (1.1.2-1) ...
368s Selecting previously unselected package libhdf5-103-1t64:arm64.
368s Preparing to unpack .../08-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu2_arm64.deb ...
368s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu2) ...
368s Selecting previously unselected package libhdf5-hl-100t64:arm64.
368s Preparing to unpack .../09-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu2_arm64.deb ...
368s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu2) ...
368s Selecting previously unselected package liblapack3:arm64.
368s Preparing to unpack .../10-liblapack3_3.12.0-3_arm64.deb ...
368s Unpacking liblapack3:arm64 (3.12.0-3) ...
368s Selecting previously unselected package liblbfgsb0:arm64.
368s Preparing to unpack .../11-liblbfgsb0_3.0+dfsg.4-1_arm64.deb ...
368s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1) ...
368s Selecting previously unselected package liblzf1:arm64.
368s Preparing to unpack .../12-liblzf1_3.6-4_arm64.deb ...
368s Unpacking liblzf1:arm64 (3.6-4) ...
368s Selecting previously unselected package python3-lib2to3.
368s Preparing to unpack .../13-python3-lib2to3_3.11.5-1_all.deb ...
368s Unpacking python3-lib2to3 (3.11.5-1) ...
369s Selecting previously unselected package python3-distutils.
369s Preparing to unpack .../14-python3-distutils_3.11.5-1_all.deb ...
369s Unpacking python3-distutils (3.11.5-1) ...
369s Selecting previously unselected package python3-all.
369s Preparing to unpack .../15-python3-all_3.12.1-0ubuntu2_arm64.deb ...
369s Unpacking python3-all (3.12.1-0ubuntu2) ...
369s Selecting previously unselected package python3-dateutil.
369s Preparing to unpack .../16-python3-dateutil_2.8.2-3_all.deb ...
369s Unpacking python3-dateutil (2.8.2-3) ...
369s Selecting previously unselected package python3-decorator.
369s Preparing to unpack .../17-python3-decorator_5.1.1-5_all.deb ...
369s Unpacking python3-decorator (5.1.1-5) ...
369s Selecting previously unselected package python3-numpy.
369s Preparing to unpack .../18-python3-numpy_1%3a1.24.2-2_arm64.deb ...
369s Unpacking python3-numpy (1:1.24.2-2) ...
369s Selecting previously unselected package python3-h5py-serial.
369s Preparing to unpack .../19-python3-h5py-serial_3.10.0-1ubuntu2_arm64.deb ...
369s Unpacking python3-h5py-serial (3.10.0-1ubuntu2) ...
369s Selecting previously unselected package python3-h5py.
369s Preparing to unpack .../20-python3-h5py_3.10.0-1ubuntu2_all.deb ...
369s Unpacking python3-h5py (3.10.0-1ubuntu2) ...
369s Selecting previously unselected package python3-pandas-lib:arm64.
369s Preparing to unpack .../21-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_arm64.deb ...
369s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ...
369s Selecting previously unselected package python3-pandas.
369s Preparing to unpack .../22-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ...
369s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ...
370s Selecting previously unselected package python3-scipy.
370s Preparing to unpack .../23-python3-scipy_1.11.4-6_arm64.deb ...
370s Unpacking python3-scipy (1.11.4-6) ...
370s Selecting previously unselected package python3-ruamel.yaml.clib:arm64.
370s Preparing to unpack .../24-python3-ruamel.yaml.clib_0.2.8-1_arm64.deb ...
370s Unpacking python3-ruamel.yaml.clib:arm64 (0.2.8-1) ...
370s Selecting previously unselected package python3-ruamel.yaml.
370s Preparing to unpack .../25-python3-ruamel.yaml_0.17.21-1_all.deb ...
370s Unpacking python3-ruamel.yaml (0.17.21-1) ...
370s Selecting previously unselected package python3-hdmf.
370s Preparing to unpack .../26-python3-hdmf_3.11.0-2_all.deb ...
370s Unpacking python3-hdmf (3.11.0-2) ...
370s Selecting previously unselected package python3-pynwb.
370s Preparing to unpack .../27-python3-pynwb_2.5.0-1_all.deb ...
370s Unpacking python3-pynwb (2.5.0-1) ...
370s Selecting previously unselected package autopkgtest-satdep.
371s Preparing to unpack .../28-1-autopkgtest-satdep.deb ...
371s Unpacking autopkgtest-satdep (0) ...
371s Setting up python3-ruamel.yaml.clib:arm64 (0.2.8-1) ...
371s Setting up libaec0:arm64 (1.1.2-1) ...
371s Setting up python3-decorator (5.1.1-5) ...
371s Setting up libblas3:arm64 (3.12.0-3) ...
371s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
371s Setting up liblzf1:arm64 (3.6-4) ...
371s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
371s Setting up python3-ruamel.yaml (0.17.21-1) ...
371s Setting up python3-dateutil (2.8.2-3) ...
371s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ...
371s Setting up python3-lib2to3 (3.11.5-1) ...
372s Setting up libsz2:arm64 (1.1.2-1) ...
372s Setting up python3-distutils (3.11.5-1) ...
372s python3.12: can't get files for byte-compilation
372s Setting up python3.11-minimal (3.11.8-1) ...
372s Setting up liblapack3:arm64 (3.12.0-3) ...
372s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
372s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ...
372s Setting up python3-all (3.12.1-0ubuntu2) ...
372s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu2) ...
372s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ...
372s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu2) ...
372s Setting up python3.11 (3.11.8-1) ...
373s Setting up python3-numpy (1:1.24.2-2) ...
375s Setting up python3-scipy (1.11.4-6) ...
378s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ...
378s Setting up python3-h5py-serial (3.10.0-1ubuntu2) ...
378s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ...
383s Setting up python3-h5py (3.10.0-1ubuntu2) ...
383s Setting up python3-hdmf (3.11.0-2) ...
383s /usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/conf.py:220: SyntaxWarning: invalid escape sequence '\s'
383s   """
383s Setting up python3-pynwb (2.5.0-1) ...
383s Setting up autopkgtest-satdep (0) ...
383s Processing triggers for systemd (255.2-3ubuntu2) ...
383s Processing triggers for man-db (2.12.0-3) ...
384s Processing triggers for libc-bin (2.39-0ubuntu2) ...
389s (Reading database ... 80366 files and directories currently installed.)
389s Removing autopkgtest-satdep (0) ...
390s autopkgtest [21:53:18]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pynwb; print(pynwb)" ; done
390s autopkgtest [21:53:18]: test autodep8-python3: [-----------------------
391s Testing with python3.12:
393s <module 'pynwb' from '/usr/lib/python3/dist-packages/pynwb/__init__.py'>
393s autopkgtest [21:53:21]: test autodep8-python3: -----------------------]
394s autopkgtest [21:53:22]: test autodep8-python3:  - - - - - - - - - - results - - - - - - - - - -
394s autodep8-python3     PASS (superficial)
394s autopkgtest [21:53:22]: @@@@@@@@@@@@@@@@@@@@ summary
394s autodep8-python3     PASS (superficial)
407s Creating nova instance adt-noble-arm64-pynwb-20240313-214647-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240313.img (UUID 363cdc04-8630-403e-ac93-f1c7b1a75157)...